Query 046034
Match_columns 64
No_of_seqs 104 out of 576
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvl_A NIFU-like protein; prot 99.4 1.2E-13 4.2E-18 88.9 5.6 47 2-48 82-128 (129)
2 4eb5_C NIFU protein (NIFU-1); 99.4 3.6E-13 1.2E-17 89.6 6.2 49 2-50 76-125 (153)
3 2z7e_A ISCU protein, NIFU-like 99.2 5.9E-12 2E-16 83.8 3.0 48 2-49 81-129 (157)
4 1su0_B NIFU like protein ISCU; 98.0 6.3E-07 2.2E-11 59.2 -1.0 24 21-44 121-144 (159)
5 1xjs_A NIFU-like protein; SR17 97.9 2.9E-07 9.9E-12 60.0 -3.6 23 21-43 122-144 (147)
6 2qq4_A Iron-sulfur cluster bio 97.8 6.4E-06 2.2E-10 53.1 1.8 39 2-40 82-138 (138)
7 2lfw_A PHYR sigma-like domain; 43.1 34 0.0012 20.5 3.8 33 7-45 108-140 (157)
8 2o8x_A Probable RNA polymerase 40.6 37 0.0013 17.2 3.3 20 7-26 30-49 (70)
9 2r9g_A AAA ATPase, central reg 36.0 47 0.0016 22.7 4.0 44 2-45 64-121 (204)
10 3hug_A RNA polymerase sigma fa 35.7 48 0.0016 18.2 3.4 20 7-26 52-71 (92)
11 3mzy_A RNA polymerase sigma-H 35.6 50 0.0017 18.9 3.6 20 7-26 123-142 (164)
12 3ojy_B Complement component C8 35.2 33 0.0011 25.7 3.4 29 20-48 420-448 (537)
13 2p7v_B Sigma-70, RNA polymeras 33.0 20 0.00069 18.7 1.4 18 8-25 25-42 (68)
14 1j9i_A GPNU1 DBD;, terminase s 32.6 12 0.00039 20.1 0.4 13 9-21 3-15 (68)
15 1ich_A TNF-1, tumor necrosis f 31.6 72 0.0025 19.7 4.0 42 9-50 26-72 (112)
16 2wya_A Hydroxymethylglutaryl-C 31.4 42 0.0015 24.1 3.3 35 9-43 20-70 (460)
17 1ku3_A Sigma factor SIGA; heli 31.3 22 0.00076 18.8 1.4 20 7-26 29-48 (73)
18 2l32_A Small archaeal modifier 31.0 27 0.00092 19.5 1.8 18 8-25 20-37 (74)
19 2f82_A HMG-COA synthase; HMGS1 30.8 39 0.0013 24.3 3.1 18 25-42 50-67 (450)
20 2if6_A Hypothetical protein YI 30.8 30 0.001 21.9 2.2 18 21-38 106-123 (186)
21 1t92_A General secretion pathw 29.5 64 0.0022 19.8 3.5 26 30-55 14-39 (116)
22 2ga1_A Protein of unknown func 29.0 59 0.002 19.7 3.2 39 7-45 63-102 (106)
23 2lfc_A Fumarate reductase, fla 28.4 77 0.0026 19.5 3.8 25 10-44 97-121 (160)
24 2k9i_A Plasmid PRN1, complete 28.2 59 0.002 16.1 2.8 16 33-48 37-52 (55)
25 1or7_A Sigma-24, RNA polymeras 28.1 77 0.0026 18.8 3.7 19 7-25 155-173 (194)
26 1dw9_A Cyanate lyase; cyanate 26.3 24 0.00082 23.1 1.1 27 5-31 23-49 (156)
27 3gn9_A Type II secretory pathw 25.8 1.2E+02 0.0041 18.6 4.6 33 24-56 10-42 (115)
28 2r1j_L Repressor protein C2; p 25.5 39 0.0013 16.7 1.7 19 5-23 15-33 (68)
29 2heo_A Z-DNA binding protein 1 25.2 19 0.00065 19.4 0.4 16 8-23 25-40 (67)
30 1tc3_C Protein (TC3 transposas 25.1 36 0.0012 15.5 1.4 14 8-21 21-34 (51)
31 2xi8_A Putative transcription 24.2 42 0.0014 16.5 1.7 19 5-23 11-29 (66)
32 1rp3_A RNA polymerase sigma fa 24.2 97 0.0033 18.8 3.7 19 7-25 202-220 (239)
33 1qbj_A Protein (double-strande 24.1 1E+02 0.0036 17.3 3.7 28 8-45 27-54 (81)
34 1tty_A Sigma-A, RNA polymerase 24.0 35 0.0012 18.8 1.4 19 8-26 38-56 (87)
35 1y7y_A C.AHDI; helix-turn-heli 23.2 45 0.0015 16.8 1.7 19 5-23 23-41 (74)
36 2kep_A General secretion pathw 23.2 64 0.0022 19.5 2.6 28 28-55 12-39 (110)
37 3bs3_A Putative DNA-binding pr 23.1 45 0.0015 16.9 1.7 19 5-23 20-38 (76)
38 3omt_A Uncharacterized protein 22.4 51 0.0017 16.9 1.8 20 5-24 18-37 (73)
39 1zug_A Phage 434 CRO protein; 22.4 47 0.0016 16.6 1.7 17 5-21 13-29 (71)
40 1r69_A Repressor protein CI; g 22.2 48 0.0016 16.4 1.7 17 5-21 11-27 (69)
41 2jpc_A SSRB; DNA binding prote 22.1 84 0.0029 15.5 4.4 19 6-24 11-29 (61)
42 3oq9_A Tumor necrosis factor r 21.8 62 0.0021 18.9 2.3 39 11-49 15-58 (86)
43 2x48_A CAG38821; archeal virus 21.6 43 0.0015 16.5 1.4 18 7-24 30-47 (55)
44 3t72_q RNA polymerase sigma fa 21.4 1.1E+02 0.0039 17.7 3.4 19 8-26 39-57 (99)
45 2of5_A Death domain-containing 21.3 1.1E+02 0.0038 18.4 3.5 41 7-47 34-79 (114)
46 3h78_A PQS biosynthetic enzyme 21.3 44 0.0015 23.2 1.8 34 9-42 51-89 (359)
47 2cpg_A REPA protein, transcrip 21.2 58 0.002 15.6 1.8 14 33-46 30-43 (45)
48 3fmy_A HTH-type transcriptiona 21.2 77 0.0026 16.6 2.5 20 5-24 21-40 (73)
49 2w7n_A TRFB transcriptional re 20.7 1.4E+02 0.0049 17.7 3.8 32 7-44 33-64 (101)
50 2o71_A Death domain-containing 20.3 1.5E+02 0.0052 17.8 4.1 42 7-48 34-80 (115)
51 2b5a_A C.BCLI; helix-turn-heli 20.1 57 0.0019 16.6 1.7 19 5-23 20-38 (77)
No 1
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=99.44 E-value=1.2e-13 Score=88.87 Aligned_cols=47 Identities=49% Similarity=0.735 Sum_probs=43.8
Q ss_pred hhHHhhcCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhCC
Q 046034 2 ANLRNLSGLSKEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKHTK 48 (64)
Q Consensus 2 ~~~EA~~I~~~dI~e~LgLP~~K~HCA~LA~~ALk~AI~dY~~k~~~ 48 (64)
.++||+.|++++|.+.|||||.|+||++|+.+||+.||.+|+.|+..
T Consensus 82 t~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k~~~ 128 (129)
T 3lvl_A 82 SLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREA 128 (129)
T ss_dssp CHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred cHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999999999999999999999998653
No 2
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=99.41 E-value=3.6e-13 Score=89.65 Aligned_cols=49 Identities=37% Similarity=0.493 Sum_probs=45.5
Q ss_pred hhHHhhcCCHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHhhCCCc
Q 046034 2 ANLRNLSGLSKEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKHTKSS 50 (64)
Q Consensus 2 ~~~EA~~I~~~dI~e~L-gLP~~K~HCA~LA~~ALk~AI~dY~~k~~~~~ 50 (64)
.++||+.|++++|+++| ||||.|+|||+|+.+||+.||.+|+.+++...
T Consensus 76 tleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~ 125 (153)
T 4eb5_C 76 TIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKID 125 (153)
T ss_dssp BHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999 89999999999999999999999999986543
No 3
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=99.20 E-value=5.9e-12 Score=83.81 Aligned_cols=48 Identities=33% Similarity=0.531 Sum_probs=44.6
Q ss_pred hhHHhhcCCHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 046034 2 ANLRNLSGLSKEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKHTKS 49 (64)
Q Consensus 2 ~~~EA~~I~~~dI~e~L-gLP~~K~HCA~LA~~ALk~AI~dY~~k~~~~ 49 (64)
.++||+.|++++|.+.| +|||.|+|||+|+.+||+.||.+|+.+++..
T Consensus 81 t~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~~~ 129 (157)
T 2z7e_A 81 PIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRV 129 (157)
T ss_dssp BHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTCH
T ss_pred cHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcCCc
Confidence 57899999999999999 7999999999999999999999999887653
No 4
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=97.96 E-value=6.3e-07 Score=59.24 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 046034 21 PPVKLHCSMLAEDAIKAAVKDYEA 44 (64)
Q Consensus 21 P~~K~HCA~LA~~ALk~AI~dY~~ 44 (64)
+|.|+||++|+.+||+.||.++-.
T Consensus 121 ~p~R~~Ca~La~~Al~~Al~~~~~ 144 (159)
T 1su0_B 121 FPQRIKCSTLAWNALKEAIKRSAN 144 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC---
T ss_pred CcchhHHHHHHHHHHHHHHHhhcc
Confidence 489999999999999999988533
No 5
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=97.89 E-value=2.9e-07 Score=60.04 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 046034 21 PPVKLHCSMLAEDAIKAAVKDYE 43 (64)
Q Consensus 21 P~~K~HCA~LA~~ALk~AI~dY~ 43 (64)
+|.|+||++|+.+||+.||.+|.
T Consensus 122 ~p~R~~Ca~La~~Al~~Al~~~e 144 (147)
T 1xjs_A 122 FPARIKCATLSWKALEKGVAKEE 144 (147)
T ss_dssp STTTHHHHHHHHHHHHHHSCSTT
T ss_pred CcchhHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999997764
No 6
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=97.81 E-value=6.4e-06 Score=53.06 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.5
Q ss_pred hhHHhhcCCHHHH---------------HHhc-CC--CCchhHHHHHHHHHHHHHHH
Q 046034 2 ANLRNLSGLSKEI---------------AKHL-SL--PPVKLHCSMLAEDAIKAAVK 40 (64)
Q Consensus 2 ~~~EA~~I~~~dI---------------~e~L-gL--P~~K~HCA~LA~~ALk~AI~ 40 (64)
.++||+.|++..+ ++.| |+ +|.|+||++|+.+||+.||.
T Consensus 82 t~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~ 138 (138)
T 2qq4_A 82 KVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEALR 138 (138)
T ss_dssp BHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHHHhC
Confidence 4677888776542 2233 43 47899999999999999983
No 7
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=43.12 E-value=34 Score=20.49 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=21.9
Q ss_pred hcCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046034 7 LSGLSKEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 45 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~HCA~LA~~ALk~AI~dY~~k 45 (64)
.+++.++|++.||+|+.-+ ..-|++|...-+..
T Consensus 108 ~g~s~~EIA~~lgis~~tV------~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEV------ETLVTEALAEIEKQ 140 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHH------HHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHH------HHHHHHHHHHHHHH
Confidence 3678999999999996543 24455555554443
No 8
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=40.56 E-value=37 Score=17.20 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=15.3
Q ss_pred hcCCHHHHHHhcCCCCchhH
Q 046034 7 LSGLSKEIAKHLSLPPVKLH 26 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~H 26 (64)
...+.++|++.||+++..+.
T Consensus 30 ~g~s~~eIA~~lgis~~tv~ 49 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIR 49 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHH
Confidence 46788999999998865543
No 9
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.98 E-value=47 Score=22.69 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=28.9
Q ss_pred hhHHhhcC--CHHHHHHhcCCCCchhHHHHHH------------HHHHHHHHHHHHHh
Q 046034 2 ANLRNLSG--LSKEIAKHLSLPPVKLHCSMLA------------EDAIKAAVKDYEAK 45 (64)
Q Consensus 2 ~~~EA~~I--~~~dI~e~LgLP~~K~HCA~LA------------~~ALk~AI~dY~~k 45 (64)
|+.+|+.+ +.-+.++.+|+|+-++.-+.-+ ..|+..|+.+.+..
T Consensus 64 AdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKSNs~y~A~~~A~~~v~~~ 121 (204)
T 2r9g_A 64 GNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKSNSAYMALDAALADIREG 121 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhc
Confidence 34444443 3456678889999999765443 47777787777654
No 10
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=35.74 E-value=48 Score=18.23 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=15.7
Q ss_pred hcCCHHHHHHhcCCCCchhH
Q 046034 7 LSGLSKEIAKHLSLPPVKLH 26 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~H 26 (64)
..++.++|++.||+++..++
T Consensus 52 ~g~s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVK 71 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHH
Confidence 46789999999998865544
No 11
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=35.57 E-value=50 Score=18.87 Aligned_cols=20 Identities=25% Similarity=0.057 Sum_probs=16.4
Q ss_pred hcCCHHHHHHhcCCCCchhH
Q 046034 7 LSGLSKEIAKHLSLPPVKLH 26 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~H 26 (64)
.+++.++|++.||+++..+.
T Consensus 123 ~g~s~~EIA~~lgis~~tV~ 142 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSID 142 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHH
Confidence 46789999999999976654
No 12
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=35.17 E-value=33 Score=25.68 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhCC
Q 046034 20 LPPVKLHCSMLAEDAIKAAVKDYEAKHTK 48 (64)
Q Consensus 20 LP~~K~HCA~LA~~ALk~AI~dY~~k~~~ 48 (64)
||+..+.|+..-...|++||.+|..+...
T Consensus 420 v~~~~ip~~~~kr~nL~~Ai~~Yl~e~~~ 448 (537)
T 3ojy_B 420 VTATDFAYSSTVRQNMKQALEEFQKEVSS 448 (537)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHTCG
T ss_pred cCcccCCchHHHHHHHHHHHHHHHHHhCc
Confidence 46778888888889999999999988653
No 13
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.00 E-value=20 Score=18.72 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=15.1
Q ss_pred cCCHHHHHHhcCCCCchh
Q 046034 8 SGLSKEIAKHLSLPPVKL 25 (64)
Q Consensus 8 ~I~~~dI~e~LgLP~~K~ 25 (64)
..+.++|++.||+++..+
T Consensus 25 g~s~~eIA~~lgis~~tV 42 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERI 42 (68)
T ss_dssp CCCHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 689999999999986654
No 14
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.59 E-value=12 Score=20.08 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=6.8
Q ss_pred CCHHHHHHhcCCC
Q 046034 9 GLSKEIAKHLSLP 21 (64)
Q Consensus 9 I~~~dI~e~LgLP 21 (64)
++.++++++||++
T Consensus 3 lt~~e~a~~LgvS 15 (68)
T 1j9i_A 3 VNKKQLADIFGAS 15 (68)
T ss_dssp EEHHHHHHHTTCC
T ss_pred cCHHHHHHHHCcC
Confidence 4455555555554
No 15
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=31.57 E-value=72 Score=19.65 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCHHHHHHhcCCCCchhHHHHHH-----HHHHHHHHHHHHHhhCCCc
Q 046034 9 GLSKEIAKHLSLPPVKLHCSMLA-----EDAIKAAVKDYEAKHTKSS 50 (64)
Q Consensus 9 I~~~dI~e~LgLP~~K~HCA~LA-----~~ALk~AI~dY~~k~~~~~ 50 (64)
=..+.++..|||++.++..+..- .+....-+..|+.+.+..+
T Consensus 26 ~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~ 72 (112)
T 1ich_A 26 LRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRRE 72 (112)
T ss_dssp TTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCC
Confidence 37889999999999999988753 3667777888888876443
No 16
>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens}
Probab=31.36 E-value=42 Score=24.12 Aligned_cols=35 Identities=6% Similarity=0.015 Sum_probs=25.7
Q ss_pred CCHHHHHHhcCCCCc----------------hhHHHHHHHHHHHHHHHHHH
Q 046034 9 GLSKEIAKHLSLPPV----------------KLHCSMLAEDAIKAAVKDYE 43 (64)
Q Consensus 9 I~~~dI~e~LgLP~~----------------K~HCA~LA~~ALk~AI~dY~ 43 (64)
++++|+.++.|.+++ .-..+.||..|.+.||.++-
T Consensus 20 v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a~ 70 (460)
T 2wya_A 20 VDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQ 70 (460)
T ss_dssp EEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 567777776655443 33568899999999999874
No 17
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.31 E-value=22 Score=18.81 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=16.1
Q ss_pred hcCCHHHHHHhcCCCCchhH
Q 046034 7 LSGLSKEIAKHLSLPPVKLH 26 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~H 26 (64)
...+.++|++.||+++..+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~ 48 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIR 48 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHH
Confidence 36899999999999976654
No 18
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=31.00 E-value=27 Score=19.54 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.9
Q ss_pred cCCHHHHHHhcCCCCchh
Q 046034 8 SGLSKEIAKHLSLPPVKL 25 (64)
Q Consensus 8 ~I~~~dI~e~LgLP~~K~ 25 (64)
..|-.|+++.||||+..+
T Consensus 20 g~Tv~dLL~~Lgl~~~~V 37 (74)
T 2l32_A 20 DGTYADLVRAVDLSPHEV 37 (74)
T ss_dssp TCSHHHHHHTTCCCSSCC
T ss_pred CCcHHHHHHHcCCCcceE
Confidence 467889999999998765
No 19
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A*
Probab=30.79 E-value=39 Score=24.28 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 046034 25 LHCSMLAEDAIKAAVKDY 42 (64)
Q Consensus 25 ~HCA~LA~~ALk~AI~dY 42 (64)
...+.|+..|.+.||.++
T Consensus 50 e~~~~La~~Aa~~aL~~a 67 (450)
T 2f82_A 50 EDVISMSFNAVTSLLEKY 67 (450)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 356899999999999886
No 20
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=30.75 E-value=30 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=15.9
Q ss_pred CCchhHHHHHHHHHHHHH
Q 046034 21 PPVKLHCSMLAEDAIKAA 38 (64)
Q Consensus 21 P~~K~HCA~LA~~ALk~A 38 (64)
...++.||.|..++++.|
T Consensus 106 ~~~~~yCSelV~~ay~~a 123 (186)
T 2if6_A 106 SDDRQYCSEVVWKVYQNA 123 (186)
T ss_dssp SSSSBCHHHHHHHHHHHH
T ss_pred CCCcEEhHHHHHHHHHHh
Confidence 457899999999999886
No 21
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=29.53 E-value=64 Score=19.80 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccc
Q 046034 30 LAEDAIKAAVKDYEAKHTKSSAASEA 55 (64)
Q Consensus 30 LA~~ALk~AI~dY~~k~~~~~~~~~~ 55 (64)
--..+|..||..|+...++-+...++
T Consensus 14 adi~~l~~ALd~Y~lD~G~YPtt~qg 39 (116)
T 1t92_A 14 SDLVALEGALDMYKLDNSRYPTTEQG 39 (116)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHH
Confidence 34578999999999988776665433
No 22
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=29.01 E-value=59 Score=19.74 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=27.6
Q ss_pred hcCCHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046034 7 LSGLSKEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 45 (64)
Q Consensus 7 ~~I~~~dI~e~L-gLP~~K~HCA~LA~~ALk~AI~dY~~k 45 (64)
...+.++|++.. +|+.+.++=+..=....+.-|..|...
T Consensus 63 ~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~~~~eId~~i~~ 102 (106)
T 2ga1_A 63 QGAPDKELLANYPGLTAEDLSAAWHYYEQNPEQIDREIAQ 102 (106)
T ss_dssp TTCCHHHHHHHSTTCCHHHHHHHHHHHHHSHHHHHHHHCC
T ss_pred cCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888 788877776655555667777777654
No 23
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=28.37 E-value=77 Score=19.48 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.2
Q ss_pred CHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 046034 10 LSKEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEA 44 (64)
Q Consensus 10 ~~~dI~e~LgLP~~K~HCA~LA~~ALk~AI~dY~~ 44 (64)
|-+++++.+|+| .++|++.|.+|-.
T Consensus 97 TleeLA~~~gid----------~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 97 SLESAAEQAGIV----------VDELVQTVKNYQG 121 (160)
T ss_dssp SHHHHHHHHTCC----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCC----------HHHHHHHHHHHHH
Confidence 446677777888 4689999999974
No 24
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.25 E-value=59 Score=16.09 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhCC
Q 046034 33 DAIKAAVKDYEAKHTK 48 (64)
Q Consensus 33 ~ALk~AI~dY~~k~~~ 48 (64)
+.++.||..|......
T Consensus 37 ~~ir~ai~~~l~~~~~ 52 (55)
T 2k9i_A 37 DVCRLAIKEYLDNHDK 52 (55)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhHh
Confidence 4567788888776544
No 25
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.11 E-value=77 Score=18.83 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=15.1
Q ss_pred hcCCHHHHHHhcCCCCchh
Q 046034 7 LSGLSKEIAKHLSLPPVKL 25 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~ 25 (64)
.+++.++|++.||+++..+
T Consensus 155 ~g~s~~EIA~~lgis~~tV 173 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTV 173 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHCCCHHHH
Confidence 4688999999999886544
No 26
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=26.34 E-value=24 Score=23.11 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=20.5
Q ss_pred HhhcCCHHHHHHhcCCCCchhHHHHHH
Q 046034 5 RNLSGLSKEIAKHLSLPPVKLHCSMLA 31 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~K~HCA~LA 31 (64)
...++|.++|++.+|+++.-+.=+.|+
T Consensus 23 ~~KGLTwe~IAe~iG~S~v~vtaa~lG 49 (156)
T 1dw9_A 23 AKKDLSFAEIADGTGLAEAFVTAALLG 49 (156)
T ss_dssp HHTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 457899999999999887666555444
No 27
>3gn9_A Type II secretory pathway, pseudopilin EPSG; general secretory pathway, major pilin, protein transport, C methylation; 1.86A {Vibrio vulnificus} PDB: 3fu1_A
Probab=25.81 E-value=1.2e+02 Score=18.55 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCccccccc
Q 046034 24 KLHCSMLAEDAIKAAVKDYEAKHTKSSAASEAA 56 (64)
Q Consensus 24 K~HCA~LA~~ALk~AI~dY~~k~~~~~~~~~~~ 56 (64)
|.-=+..-..+|+.||..|+...++=+...+++
T Consensus 10 k~~~a~~di~~l~~ALd~Y~lD~G~YPtteqGL 42 (115)
T 3gn9_A 10 DQQKAITDIVALENALDMYKLDNSVYPTTDQGL 42 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 334445557799999999999988776654443
No 28
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=25.49 E-value=39 Score=16.69 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=13.3
Q ss_pred HhhcCCHHHHHHhcCCCCc
Q 046034 5 RNLSGLSKEIAKHLSLPPV 23 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~ 23 (64)
+...++-.++++.+|+++.
T Consensus 15 ~~~g~s~~~lA~~~gis~~ 33 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNV 33 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHH
T ss_pred HHcCCCHHHHHHHHCCCHH
Confidence 4456788888887777643
No 29
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.17 E-value=19 Score=19.38 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=12.7
Q ss_pred cCCHHHHHHhcCCCCc
Q 046034 8 SGLSKEIAKHLSLPPV 23 (64)
Q Consensus 8 ~I~~~dI~e~LgLP~~ 23 (64)
.++..+|++.||+|..
T Consensus 25 ~~s~~eLA~~lglsr~ 40 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKK 40 (67)
T ss_dssp CEEHHHHHHHHCSCHH
T ss_pred CcCHHHHHHHHCcCHH
Confidence 3778899999999933
No 30
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.08 E-value=36 Score=15.51 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=10.1
Q ss_pred cCCHHHHHHhcCCC
Q 046034 8 SGLSKEIAKHLSLP 21 (64)
Q Consensus 8 ~I~~~dI~e~LgLP 21 (64)
.++..+|++.||++
T Consensus 21 g~s~~~IA~~lgis 34 (51)
T 1tc3_C 21 NVSLHEMSRKISRS 34 (51)
T ss_dssp TCCHHHHHHHHTCC
T ss_pred CCCHHHHHHHHCcC
Confidence 46777787777776
No 31
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.21 E-value=42 Score=16.45 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=13.8
Q ss_pred HhhcCCHHHHHHhcCCCCc
Q 046034 5 RNLSGLSKEIAKHLSLPPV 23 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~ 23 (64)
+...++-.++++.+|+++.
T Consensus 11 ~~~g~s~~~lA~~~gis~~ 29 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQ 29 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHH
T ss_pred HHcCCCHHHHHHHHCcCHH
Confidence 4567888888888887643
No 32
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.19 E-value=97 Score=18.85 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=14.6
Q ss_pred hcCCHHHHHHhcCCCCchh
Q 046034 7 LSGLSKEIAKHLSLPPVKL 25 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~ 25 (64)
..++.++|++.||+++..+
T Consensus 202 ~g~s~~EIA~~lgis~~~V 220 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRV 220 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHH
Confidence 3578889999888886654
No 33
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.10 E-value=1e+02 Score=17.32 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=20.0
Q ss_pred cCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046034 8 SGLSKEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 45 (64)
Q Consensus 8 ~I~~~dI~e~LgLP~~K~HCA~LA~~ALk~AI~dY~~k 45 (64)
.++..+|++.||++ ..+++..|..-..+
T Consensus 27 ~~t~~eLA~~Lgvs----------r~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 27 ATTAHDLSGKLGTP----------KKEINRVLYSLAKK 54 (81)
T ss_dssp CBCHHHHHHHHTCC----------HHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCcC----------HHHHHHHHHHHHHC
Confidence 57888999988888 45666666665443
No 34
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.99 E-value=35 Score=18.77 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=15.7
Q ss_pred cCCHHHHHHhcCCCCchhH
Q 046034 8 SGLSKEIAKHLSLPPVKLH 26 (64)
Q Consensus 8 ~I~~~dI~e~LgLP~~K~H 26 (64)
..+.++|++.||+++..+.
T Consensus 38 ~~s~~EIA~~lgis~~tV~ 56 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIR 56 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 5799999999999976654
No 35
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=23.19 E-value=45 Score=16.77 Aligned_cols=19 Identities=11% Similarity=-0.132 Sum_probs=13.2
Q ss_pred HhhcCCHHHHHHhcCCCCc
Q 046034 5 RNLSGLSKEIAKHLSLPPV 23 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~ 23 (64)
+..+++-.++++.+|+++.
T Consensus 23 ~~~g~s~~~lA~~~gis~~ 41 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRS 41 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHHHCcCHH
Confidence 4456788888887777643
No 36
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=23.18 E-value=64 Score=19.46 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcccccc
Q 046034 28 SMLAEDAIKAAVKDYEAKHTKSSAASEA 55 (64)
Q Consensus 28 A~LA~~ALk~AI~dY~~k~~~~~~~~~~ 55 (64)
+.--..+|..||..|+..+++-+...++
T Consensus 12 a~a~i~~l~~Al~~Y~lD~G~YPtt~qg 39 (110)
T 2kep_A 12 AKGDIKAIAAALDMYKLDNFAYPSTQQG 39 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHH
Confidence 3344578999999999998776665433
No 37
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=23.11 E-value=45 Score=16.93 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=13.6
Q ss_pred HhhcCCHHHHHHhcCCCCc
Q 046034 5 RNLSGLSKEIAKHLSLPPV 23 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~ 23 (64)
+...++-.++++.+|+++.
T Consensus 20 ~~~g~s~~~lA~~~gis~~ 38 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSEN 38 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHHHCcCHH
Confidence 4457788888888887743
No 38
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.39 E-value=51 Score=16.88 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=13.9
Q ss_pred HhhcCCHHHHHHhcCCCCch
Q 046034 5 RNLSGLSKEIAKHLSLPPVK 24 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~K 24 (64)
+..+++-.++++.+|+++..
T Consensus 18 ~~~glsq~~lA~~~gis~~~ 37 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTT 37 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHH
T ss_pred HHcCCCHHHHHHHHCcCHHH
Confidence 45677888888888776443
No 39
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.35 E-value=47 Score=16.56 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=10.9
Q ss_pred HhhcCCHHHHHHhcCCC
Q 046034 5 RNLSGLSKEIAKHLSLP 21 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP 21 (64)
+...++-.++++.+|++
T Consensus 13 ~~~glsq~~lA~~~gis 29 (71)
T 1zug_A 13 IALKMTQTELATKAGVK 29 (71)
T ss_dssp HHTTCCHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 34556777777766665
No 40
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=22.16 E-value=48 Score=16.43 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=11.1
Q ss_pred HhhcCCHHHHHHhcCCC
Q 046034 5 RNLSGLSKEIAKHLSLP 21 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP 21 (64)
+...++-.++++.+|++
T Consensus 11 ~~~glsq~~lA~~~gis 27 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTT 27 (69)
T ss_dssp HHTTCCHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34566777777777665
No 41
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.12 E-value=84 Score=15.49 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.0
Q ss_pred hhcCCHHHHHHhcCCCCch
Q 046034 6 NLSGLSKEIAKHLSLPPVK 24 (64)
Q Consensus 6 A~~I~~~dI~e~LgLP~~K 24 (64)
....+.++|++.||+++.-
T Consensus 11 ~~g~s~~eIA~~l~is~~t 29 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKT 29 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHH
T ss_pred HcCCCHHHHHHHhCCCHHH
Confidence 3468899999999998544
No 42
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=21.83 E-value=62 Score=18.86 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCchhHHHHHH-----HHHHHHHHHHHHHhhCCC
Q 046034 11 SKEIAKHLSLPPVKLHCSMLA-----EDAIKAAVKDYEAKHTKS 49 (64)
Q Consensus 11 ~~dI~e~LgLP~~K~HCA~LA-----~~ALk~AI~dY~~k~~~~ 49 (64)
.+.++..|||++.++...... .+...+-+..|+.+.+.+
T Consensus 15 wK~~~R~LGlse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g~~ 58 (86)
T 3oq9_A 15 AKKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHGKS 58 (86)
T ss_dssp HHHHHHTTTSCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHcCCCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhCcc
Confidence 355667779999999877754 267778888888887644
No 43
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=21.59 E-value=43 Score=16.47 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=13.3
Q ss_pred hcCCHHHHHHhcCCCCch
Q 046034 7 LSGLSKEIAKHLSLPPVK 24 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K 24 (64)
..++..+|++.||+++.-
T Consensus 30 ~g~s~~eIA~~lgis~~T 47 (55)
T 2x48_A 30 MGYTVQQIANALGVSERK 47 (55)
T ss_dssp TTCCHHHHHHHHTSCHHH
T ss_pred cCCCHHHHHHHHCcCHHH
Confidence 357888888888887543
No 44
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.38 E-value=1.1e+02 Score=17.70 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=15.9
Q ss_pred cCCHHHHHHhcCCCCchhH
Q 046034 8 SGLSKEIAKHLSLPPVKLH 26 (64)
Q Consensus 8 ~I~~~dI~e~LgLP~~K~H 26 (64)
..|.++|++.||++...+.
T Consensus 39 ~~s~~EIA~~lgiS~~tVr 57 (99)
T 3t72_q 39 DYTLEEVGKQFDVTRERIR 57 (99)
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 4799999999999977654
No 45
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.30 E-value=1.1e+02 Score=18.36 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=29.6
Q ss_pred hcCCHHHHHHhcCCCCchhHHHHHHH-----HHHHHHHHHHHHhhC
Q 046034 7 LSGLSKEIAKHLSLPPVKLHCSMLAE-----DAIKAAVKDYEAKHT 47 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~HCA~LA~-----~ALk~AI~dY~~k~~ 47 (64)
+.-+++.++..|||++..+.....-- +-....+..|+.+.+
T Consensus 34 lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G 79 (114)
T 2of5_A 34 LGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFG 79 (114)
T ss_dssp CCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHG
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Confidence 44577899999999988887655432 555666778887754
No 46
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=21.30 E-value=44 Score=23.22 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=21.8
Q ss_pred CCHHHHHHhcCCC-----CchhHHHHHHHHHHHHHHHHH
Q 046034 9 GLSKEIAKHLSLP-----PVKLHCSMLAEDAIKAAVKDY 42 (64)
Q Consensus 9 I~~~dI~e~LgLP-----~~K~HCA~LA~~ALk~AI~dY 42 (64)
.+.+.|.+..|+- ......+.|+..|.+.|+.+.
T Consensus 51 ~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~a 89 (359)
T 3h78_A 51 TSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIEAA 89 (359)
T ss_dssp CCHHHHHHHHCCCEEEECCTTCCTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHhc
Confidence 3444455444432 223456889999999999875
No 47
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=21.23 E-value=58 Score=15.57 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhh
Q 046034 33 DAIKAAVKDYEAKH 46 (64)
Q Consensus 33 ~ALk~AI~dY~~k~ 46 (64)
..++.||..|...+
T Consensus 30 ~~ir~ai~~~l~~~ 43 (45)
T 2cpg_A 30 AMISVALENYKKGQ 43 (45)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHc
Confidence 45678888887653
No 48
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=21.21 E-value=77 Score=16.58 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=14.5
Q ss_pred HhhcCCHHHHHHhcCCCCch
Q 046034 5 RNLSGLSKEIAKHLSLPPVK 24 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~K 24 (64)
+...+|-.++++.+|+++..
T Consensus 21 ~~~gltq~elA~~~gvs~~t 40 (73)
T 3fmy_A 21 KKLSLTQKEASEIFGGGVNA 40 (73)
T ss_dssp HHTTCCHHHHHHHHCSCTTH
T ss_pred HHcCCCHHHHHHHhCcCHHH
Confidence 45678888888888876543
No 49
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=20.74 E-value=1.4e+02 Score=17.72 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.6
Q ss_pred hcCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 046034 7 LSGLSKEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEA 44 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~HCA~LA~~ALk~AI~dY~~ 44 (64)
-+.+-.+|++.||++-.+++ ..|+.|-..|..
T Consensus 33 ~g~tQ~eIA~~lGiSR~~Vs------rlL~~Ar~~~~~ 64 (101)
T 2w7n_A 33 DGKPQATFATSLGLTRGAVS------QAVHRVWAAFED 64 (101)
T ss_dssp TCCCHHHHHHHHTCCHHHHH------HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHH------HHHHHHHHHHhc
Confidence 35788999999999866654 667777777864
No 50
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.27 E-value=1.5e+02 Score=17.75 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=30.2
Q ss_pred hcCCHHHHHHhcCCCCchhHHHHHHH-----HHHHHHHHHHHHhhCC
Q 046034 7 LSGLSKEIAKHLSLPPVKLHCSMLAE-----DAIKAAVKDYEAKHTK 48 (64)
Q Consensus 7 ~~I~~~dI~e~LgLP~~K~HCA~LA~-----~ALk~AI~dY~~k~~~ 48 (64)
+.-+++.++..|||++..+.....-- +-....+..|+.+.+.
T Consensus 34 LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~ 80 (115)
T 2o71_A 34 LGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK 80 (115)
T ss_dssp CCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGG
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc
Confidence 45577899999999998887655432 5556667888877643
No 51
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.11 E-value=57 Score=16.57 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=12.7
Q ss_pred HhhcCCHHHHHHhcCCCCc
Q 046034 5 RNLSGLSKEIAKHLSLPPV 23 (64)
Q Consensus 5 EA~~I~~~dI~e~LgLP~~ 23 (64)
+..++|-.++++.+|+++.
T Consensus 20 ~~~glsq~~lA~~~gis~~ 38 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRT 38 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHHHCCCHH
Confidence 3456777778777776643
Done!