BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046036
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 14/271 (5%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
G +PQE+ + L+ L + + GEIPS LS + L ++SL +N L G IP + N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
L+ IL N F+G+IPA + +LI L L+ N G+IP ++ K N +A
Sbjct: 513 LA----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 121 TSLYSFQLN---LAENNLTGNI-------PESLENLTSLQILNLSCNHLGGSIPKPSGLF 170
Y + N E + GN+ E L L++ N++ GG
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
++ +D ++N +G +P E+GS+ L+ + +S IP +G+ L L N
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK 261
GRIP + +++LS+NNLSG IP+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 124/278 (44%), Gaps = 35/278 (12%)
Query: 10 LFRLQNLNFGNSTVQGEIPSHLS-PTSKLTYLSLFSNNLHGIIPP--------------- 53
L LQ L+ + GEIP LS LT L L N+ +G +PP
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 54 -------SLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY-FNLIQLGLDRNCLAGSIPF 105
+D+ + L++LD N+F+G++P + +L+ L L N +G I
Sbjct: 325 NNFSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-- 381
Query: 106 SIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK 165
L NL + NP T +L L N TG IP +L N + L L+LS N+L G+IP
Sbjct: 382 ----LPNLCQ-NPKNTLQ---ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL 225
G S L + N G +P E+ + + L + L+ EIP L N + +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL 263
L N G IP + G + L LS+N+ SG IP EL
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 120/267 (44%), Gaps = 20/267 (7%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIP-SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT 59
G VP G+ L++L ++ GE+P L L L L N G +P SL T
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---T 361
Query: 60 NLSTKLRILDAGGNQFAGDIPAGI---PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL 116
NLS L LD N F+G I + PK L +L L N G IP ++ L
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSEL--- 417
Query: 117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
L+L+ N L+G IP SL +L+ L+ L L N L G IP+ TL ++
Sbjct: 418 ---------VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
N+ G +P + + +N + S + L+ EIP +G L L N F G IP
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 237 PFFGSFKGTIDLNLSHNNLSGTIPKEL 263
G + I L+L+ N +GTIP +
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 129/316 (40%), Gaps = 29/316 (9%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
G+ + I L+ LN ++ G IP P L YLSL N G IP D +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP---DFLSG 288
Query: 61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
L LD GN F G +P L L L N +G +P + L K+ L
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-----MDTLLKMRGLK 343
Query: 121 TSLYSFQLNLAENNLTGNIPESLENLT-SLQILNLSCNHLGGSI-------PKPSGLFST 172
L+L+ N +G +PESL NL+ SL L+LS N+ G I PK +T
Sbjct: 344 V------LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-----NT 392
Query: 173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ 232
L + +N F G +P + + S L S + LS IP +LG+ SK L L NM +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNT 292
G IP K L L N+L+G IP L G++P
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 293 SVISIVGNGKLCGGVP 308
I + N G +P
Sbjct: 513 LAILKLSNNSFSGNIP 528
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 105/239 (43%), Gaps = 15/239 (6%)
Query: 13 LQNLNFGNSTVQGEIPSHLSP-TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAG 71
L+ L+ + GE+P L+ ++ L L L SNN G I P+L N L+ L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQ 399
Query: 72 GNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLA 131
N F G IP + L+ L L N L+G+IP S+G L L+ L L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR------------DLKLW 447
Query: 132 ENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEV 191
N L G IP+ L + +L+ L L N L G IP + L+ I ++N G +P +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 192 GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL 250
G L N L S + S IP LG+ L L N+F G IP G I N
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 121/320 (37%), Gaps = 90/320 (28%)
Query: 64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
+L+ L GN+ +GD+ + + NL L + N + IPF +G LQ
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ--------- 223
Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK------------------ 165
L+++ N L+G+ ++ T L++LN+S N G IP
Sbjct: 224 ---HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Query: 166 -----PSGLFSTLSSIDFA------------------------HNNFNGSLPLE-VGSLS 195
SG TL+ +D + NNF+G LP++ + +
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 196 NTQELDFSEHMLSDEIPITLGN---------------------------RSKFEHLLLGG 228
+ LD S + S E+P +L N ++ + L L
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSV 288
N F G+IPP + + L+LS N LSGTIP L + EG++P +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 289 FTNTSVISIVGNGKLCGGVP 308
+ T I+ L G +P
Sbjct: 461 YVKTLETLILDFNDLTGEIP 480
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 127 QLNLAENNLTGNIPE--SLENLTSLQILNLSCNHLGGSIPKPSGL-FSTLSSIDFAHNNF 183
L+L+ N+L+G + SL + + L+ LN+S N L GL ++L +D + N+
Sbjct: 101 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 160
Query: 184 NGS------LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP 237
+G+ L G L + L S + +S ++ ++ E L + N F IP
Sbjct: 161 SGANVVGWVLSDGCGEL---KHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP- 214
Query: 238 FFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNTSVISI 297
F G L++S N LSG + + T G +P + + + +S+
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL-KSLQYLSL 273
Query: 298 VGNGKLCGGVPELRLLSC 315
N K G +P+ +C
Sbjct: 274 AEN-KFTGEIPDFLSGAC 290
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 14/271 (5%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
G +PQE+ + L+ L + + GEIPS LS + L ++SL +N L G IP + N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
L+ IL N F+G+IPA + +LI L L+ N G+IP ++ K N +A
Sbjct: 516 LA----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 121 TSLYSFQLN---LAENNLTGNI-------PESLENLTSLQILNLSCNHLGGSIPKPSGLF 170
Y + N E + GN+ E L L++ N++ GG
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
++ +D ++N +G +P E+GS+ L+ + +S IP +G+ L L N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK 261
GRIP + +++LS+NNLSG IP+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 124/278 (44%), Gaps = 35/278 (12%)
Query: 10 LFRLQNLNFGNSTVQGEIPSHLS-PTSKLTYLSLFSNNLHGIIPP--------------- 53
L LQ L+ + GEIP LS LT L L N+ +G +PP
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 54 -------SLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY-FNLIQLGLDRNCLAGSIPF 105
+D+ + L++LD N+F+G++P + +L+ L L N +G I
Sbjct: 328 NNFSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-- 384
Query: 106 SIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK 165
L NL + NP T +L L N TG IP +L N + L L+LS N+L G+IP
Sbjct: 385 ----LPNLCQ-NPKNTLQ---ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL 225
G S L + N G +P E+ + + L + L+ EIP L N + +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL 263
L N G IP + G + L LS+N+ SG IP EL
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 120/267 (44%), Gaps = 20/267 (7%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIP-SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT 59
G VP G+ L++L ++ GE+P L L L L N G +P SL T
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---T 364
Query: 60 NLSTKLRILDAGGNQFAGDIPAGI---PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL 116
NLS L LD N F+G I + PK L +L L N G IP ++ L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSEL--- 420
Query: 117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
L+L+ N L+G IP SL +L+ L+ L L N L G IP+ TL ++
Sbjct: 421 ---------VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
N+ G +P + + +N + S + L+ EIP +G L L N F G IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 237 PFFGSFKGTIDLNLSHNNLSGTIPKEL 263
G + I L+L+ N +GTIP +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 129/316 (40%), Gaps = 29/316 (9%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
G+ + I L+ LN ++ G IP P L YLSL N G IP D +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP---DFLSG 291
Query: 61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
L LD GN F G +P L L L N +G +P + L K+ L
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-----MDTLLKMRGLK 346
Query: 121 TSLYSFQLNLAENNLTGNIPESLENLT-SLQILNLSCNHLGGSI-------PKPSGLFST 172
L+L+ N +G +PESL NL+ SL L+LS N+ G I PK +T
Sbjct: 347 V------LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-----NT 395
Query: 173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ 232
L + +N F G +P + + S L S + LS IP +LG+ SK L L NM +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNT 292
G IP K L L N+L+G IP L G++P
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 293 SVISIVGNGKLCGGVP 308
I + N G +P
Sbjct: 516 LAILKLSNNSFSGNIP 531
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 105/239 (43%), Gaps = 15/239 (6%)
Query: 13 LQNLNFGNSTVQGEIPSHLSP-TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAG 71
L+ L+ + GE+P L+ ++ L L L SNN G I P+L N L+ L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQ 402
Query: 72 GNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLA 131
N F G IP + L+ L L N L+G+IP S+G L L+ L L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR------------DLKLW 450
Query: 132 ENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEV 191
N L G IP+ L + +L+ L L N L G IP + L+ I ++N G +P +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 192 GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL 250
G L N L S + S IP LG+ L L N+F G IP G I N
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 121/320 (37%), Gaps = 90/320 (28%)
Query: 64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
+L+ L GN+ +GD+ + + NL L + N + IPF +G LQ
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ--------- 226
Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK------------------ 165
L+++ N L+G+ ++ T L++LN+S N G IP
Sbjct: 227 ---HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283
Query: 166 -----PSGLFSTLSSIDFA------------------------HNNFNGSLPLE-VGSLS 195
SG TL+ +D + NNF+G LP++ + +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 196 NTQELDFSEHMLSDEIPITLGN---------------------------RSKFEHLLLGG 228
+ LD S + S E+P +L N ++ + L L
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSV 288
N F G+IPP + + L+LS N LSGTIP L + EG++P +
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 289 FTNTSVISIVGNGKLCGGVP 308
+ T I+ L G +P
Sbjct: 464 YVKTLETLILDFNDLTGEIP 483
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 127 QLNLAENNLTGNIPE--SLENLTSLQILNLSCNHLGGSIPKPSGL-FSTLSSIDFAHNNF 183
L+L+ N+L+G + SL + + L+ LN+S N L GL ++L +D + N+
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 184 NGS------LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP 237
+G+ L G L + L S + +S ++ ++ E L + N F IP
Sbjct: 164 SGANVVGWVLSDGCGEL---KHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP- 217
Query: 238 FFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNTSVISI 297
F G L++S N LSG + + T G +P + + + +S+
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL-KSLQYLSL 276
Query: 298 VGNGKLCGGVPELRLLSC 315
N K G +P+ +C
Sbjct: 277 AEN-KFTGEIPDFLSGAC 293
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 42/260 (16%)
Query: 3 VPQEIGNLFRLQNLNFGN-STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
+P + NL L L G + + G IP ++ ++L YL + N+ G IP L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 62 STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
T LD N +G +P I NL+ + D N ++G+IP S G L
Sbjct: 128 VT----LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT------ 177
Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
+ ++ N LTG IP + NL L+ +D + N
Sbjct: 178 -----SMTISRNRLTGKIPPTFANLN-------------------------LAFVDLSRN 207
Query: 182 NFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
G + GS NTQ++ +++ L+ ++ +G L L N G +P
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 242 FKGTIDLNLSHNNLSGTIPK 261
K LN+S NNL G IP+
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQ 286
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 112 NLQKLNPLATSLYSF-QLNL----AENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP 166
NL K P+ +SL + LN NNL G IP ++ LT L L ++ ++ G+IP
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSK-FEHLL 225
TL ++DF++N +G+LP + SL N + F + +S IP + G+ SK F +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG 257
+ N G+IPP F + ++LS N L G
Sbjct: 181 ISRNRLTGKIPPTFANLNLAF-VDLSRNMLEG 211
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 83/201 (41%), Gaps = 41/201 (20%)
Query: 1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
G +P I L +L L ++ V G IP LS L L N L G +PPS+ S N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 61 LSTKLRILDAGGNQFAGDIP---------------------AGIPKYF---NLIQLGLDR 96
L + GN+ +G IP IP F NL + L R
Sbjct: 151 LVG----ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 97 NCLAGSIPFSIGKLQNLQKLNPLATSLYSFQ------------LNLAENNLTGNIPESLE 144
N L G G +N QK++ LA + +F L+L N + G +P+ L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIH-LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 145 NLTSLQILNLSCNHLGGSIPK 165
L L LN+S N+L G IP+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ 286
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 160 GGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRS 219
G ++PKP + S+L+++ + NF L +G ++N L IP + +
Sbjct: 59 GLNLPKPYPIPSSLANLPYL--NF-----LYIGGINN----------LVGPIPPAIAKLT 101
Query: 220 KFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXX 279
+ +L + G IP F K + L+ S+N LSGT+P + +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 280 EGQLP-SMSVFTNTSVISIVGNGKLCGGVP 308
G +P S F+ + +L G +P
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
EFM NGSL+S+L N+ + +A G+K D+ N+L++ ++
Sbjct: 88 EFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRALAARNILVNSNLV 147
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFGL+RFL + ++P + ++A+ G I + W A ++ +S G
Sbjct: 148 CKVSDFGLSRFLEDDTSDP----TYTSALGGKIP--IRWTAPEAIQYRKFTSASDVWSYG 201
Query: 498 ILLLEIMT-GKRPTDEM 513
I++ E+M+ G+RP +M
Sbjct: 202 IVMWEVMSYGERPYWDM 218
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
EFM NGSL+S+L N+ + +A G+K D+ N+L++ ++
Sbjct: 114 EFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLV 173
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFGL+RFL + ++P + ++A+ G I + W A ++ +S G
Sbjct: 174 CKVSDFGLSRFLEDDTSDP----TYTSALGGKIP--IRWTAPEAIQYRKFTSASDVWSYG 227
Query: 498 ILLLEIMT-GKRPTDEM 513
I++ E+M+ G+RP +M
Sbjct: 228 IVMWEVMSYGERPYWDM 244
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
E LR Y E + G + GGN K L EF+P+GSL+ +L N+ +++L + LK
Sbjct: 63 EILRNLYHENIVKYKGICTEDGGNGIK-LIMEFLPSGSLKEYLPKNK--NKINLKQQLKY 119
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNS 470
AV I NVL++ + +GDFGL + + T+ +K +S
Sbjct: 120 AVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDS 179
Query: 471 AAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
W + M+ +++ +S G+ L E++T
Sbjct: 180 PVFWYAPECLMQ--SKFYIASDVWSFGVTLHELLT 212
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
E LR Y E + G + GGN K L EF+P+GSL+ +L N+ +++L + LK
Sbjct: 75 EILRNLYHENIVKYKGICTEDGGNGIK-LIMEFLPSGSLKEYLPKNK--NKINLKQQLKY 131
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNS 470
AV I NVL++ + +GDFGL + + T+ +K +S
Sbjct: 132 AVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDS 191
Query: 471 AAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
W + M+ +++ +S G+ L E++T
Sbjct: 192 PVFWYAPECLMQ--SKFYIASDVWSFGVTLHELLT 224
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 396 KALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAV--------------------DIP 434
+ L + +M NGS+ S L E+ LD + +IA+ D+
Sbjct: 110 RLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 169
Query: 435 S-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVA--RYQHK 490
+ N+LLD + A VGDFGLA+ + K AV G+IG+ E+++ + K
Sbjct: 170 AANILLDEEFEAVVGDFGLAKLM------DYKDXHVXXAVRGTIGHIAPEYLSTGKSSEK 223
Query: 491 GKGYSCGILLLEIMTGKRPTD-EMFA--DCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
+ G++LLE++TG+R D A D + L ++ + L E +E + LQG KD
Sbjct: 224 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD 283
Query: 548 AEDEPCMKAKI 558
E E ++ +
Sbjct: 284 EEVEQLIQVAL 294
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 396 KALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAV--------------------DI- 433
+ L + +M NGS+ S L E+ LD + +IA+ D+
Sbjct: 102 RLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 161
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVA--RYQHK 490
+N+LLD + A VGDFGLA+ + K AV G IG+ E+++ + K
Sbjct: 162 AANILLDEEFEAVVGDFGLAKLM------DYKDXHVXXAVRGXIGHIAPEYLSTGKSSEK 215
Query: 491 GKGYSCGILLLEIMTGKRPTD-EMFA--DCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
+ G++LLE++TG+R D A D + L ++ + L E +E + LQG KD
Sbjct: 216 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD 275
Query: 548 AEDEPCMKAKI 558
E E ++ +
Sbjct: 276 EEVEQLIQVAL 286
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNE---------------ATRRLDLAEGLKIAVDIPS-NVLLDYDMT 444
EFM NG+L+S+L N+ A+ LAE + D+ + N+L++ ++
Sbjct: 97 EFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLV 156
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFGL+RFL N ++P + ++++ G I + W A ++ +S G
Sbjct: 157 CKVSDFGLSRFLEENSSDP----TETSSLGGKIP--IRWTAPEAIAFRKFTSASDAWSYG 210
Query: 498 ILLLEIMT-GKRPTDEM 513
I++ E+M+ G+RP +M
Sbjct: 211 IVMWEVMSFGERPYWDM 227
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
S G+D L + +MPNGSL L + T R +A+G I D
Sbjct: 100 SDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
I S N+LLD TA + DFGLAR M + + G+ Y R +
Sbjct: 159 IKSANILLDEAFTAKISDFGLARASEKFAQTVMXSR-----IVGTTAYMAPEALRGEITP 213
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
K YS G++LLEI+TG DE
Sbjct: 214 KSDIYSFGVVLLEIITGLPAVDE 236
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNE---------------ATRRLDLAEGLKIAVDIPS-NVLLDYDMT 444
EFM NG+L+S+L N+ A+ LAE + D+ + N+L++ ++
Sbjct: 95 EFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLV 154
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFGL+RFL N ++P + ++++ G I + W A ++ +S G
Sbjct: 155 CKVSDFGLSRFLEENSSDP----TYTSSLGGKI--PIRWTAPEAIAFRKFTSASDAWSYG 208
Query: 498 ILLLEIMT-GKRPTDEM 513
I++ E+M+ G+RP +M
Sbjct: 209 IVMWEVMSFGERPYWDM 225
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
S G+D L + +MPNGSL L + T R +A+G I D
Sbjct: 100 SDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
I S N+LLD TA + DFGLAR M + + G+ Y R +
Sbjct: 159 IKSANILLDEAFTAKISDFGLARASEKFAQTVMXXR-----IVGTTAYMAPEALRGEITP 213
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
K YS G++LLEI+TG DE
Sbjct: 214 KSDIYSFGVVLLEIITGLPAVDE 236
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
S G+D L + +MPNGSL L + T R +A+G I D
Sbjct: 94 SDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 152
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
I S N+LLD TA + DFGLAR M + + G+ Y R +
Sbjct: 153 IKSANILLDEAFTAKISDFGLARASEKFAQXVMXXR-----IVGTTAYMAPEALRGEITP 207
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
K YS G++LLEI+TG DE
Sbjct: 208 KSDIYSFGVVLLEIITGLPAVDE 230
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
S G+D L + + PNGSL L + T R +A+G I D
Sbjct: 91 SDGDDL-CLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHENHHIHRD 149
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
I S N+LLD TA + DFGLAR + + + G+ Y R +
Sbjct: 150 IKSANILLDEAFTAKISDFGLAR-----ASEKFAQXVXXSRIVGTTAYXAPEALRGEITP 204
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
K YS G++LLEI+TG DE
Sbjct: 205 KSDIYSFGVVLLEIITGLPAVDE 227
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+S+L ++A + +A G+K D+ N+L++ ++
Sbjct: 126 EYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLV 185
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCGILL 500
V DFGLAR L + + + W S I Y ++ +S GI+L
Sbjct: 186 CKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYGIVL 240
Query: 501 LEIMT-GKRPTDEM 513
E+M+ G+RP EM
Sbjct: 241 WEVMSYGERPYWEM 254
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 94 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 153
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 154 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 208
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 209 IVLWEVMSYGERPYWEM 225
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+S+L ++A + +A G+K D+ N+L++ ++
Sbjct: 126 EYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLV 185
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCGILL 500
V DFGL+R L + + + W S I Y ++ +S GI+L
Sbjct: 186 CKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYGIVL 240
Query: 501 LEIMT-GKRPTDEM 513
E+M+ G+RP EM
Sbjct: 241 WEVMSYGERPYWEM 254
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 111 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 170
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 171 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 225
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 226 IVLWEVMSYGERPYWEM 242
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 24/154 (15%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDL------ 423
+ LR Y E + G D+G + L E++P GSL +L P + L
Sbjct: 85 DILRTLYHEHIIKYKGCCEDAGAASLQ-LVMEYVPLGSLRDYL-PRHSIGLAQLLLFAQQ 142
Query: 424 -AEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNSAAV 473
EG+ I D+ + NVLLD D +GDFGLA+ +P + ++ +S
Sbjct: 143 ICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPVF 202
Query: 474 WGSIGYNMEWVARYQ--HKGKGYSCGILLLEIMT 505
W Y E + Y+ + +S G+ L E++T
Sbjct: 203 W----YAPECLKEYKFYYASDVWSFGVTLYELLT 232
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 121 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 180
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 181 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 235
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 236 IVLWEVMSYGERPYWEM 252
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E+M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
E LR Y E + G D G + L E++P GSL +L P + LA+ L
Sbjct: 62 EILRTLYHEHIVKYKGCCEDQGEKSVQ-LVMEYVPLGSLRDYL-PRHC---VGLAQLLLF 116
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNS 470
A I NVLLD D +GDFGLA+ +P + ++ +S
Sbjct: 117 AQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 176
Query: 471 AAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
W + E ++ + +S G+ L E++T
Sbjct: 177 PVFWYAPECLKE--CKFYYASDVWSFGVTLYELLT 209
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
E LR Y E + G D G + L E++P GSL +L P + LA+ L
Sbjct: 63 EILRTLYHEHIVKYKGCCEDQGEKSVQ-LVMEYVPLGSLRDYL-PRHC---VGLAQLLLF 117
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNS 470
A I NVLLD D +GDFGLA+ +P + ++ +S
Sbjct: 118 AQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 177
Query: 471 AAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
W + E ++ + +S G+ L E++T
Sbjct: 178 PVFWYAPECLKE--CKFYYASDVWSFGVTLYELLT 210
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 30/157 (19%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
+ LR Y E + G D G + L E++P GSL +L P + + LA+ L
Sbjct: 68 DILRTLYHEHIIKYKGCCEDQGEKSLQ-LVMEYVPLGSLRDYL-PRHS---IGLAQLLLF 122
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNS 470
A I NVLLD D +GDFGLA+ +P + ++ +S
Sbjct: 123 AQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 182
Query: 471 AAVWGSIGYNMEWVARYQ--HKGKGYSCGILLLEIMT 505
W Y E + Y+ + +S G+ L E++T
Sbjct: 183 PVFW----YAPECLKEYKFYYASDVWSFGVTLYELLT 215
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 30/157 (19%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
+ LR Y E + G D G + L E++P GSL +L P + + LA+ L
Sbjct: 68 DILRTLYHEHIIKYKGCCEDQGEKSLQ-LVMEYVPLGSLRDYL-PRHS---IGLAQLLLF 122
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNS 470
A I NVLLD D +GDFGLA+ +P + ++ +S
Sbjct: 123 AQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 182
Query: 471 AAVWGSIGYNMEWVARYQ--HKGKGYSCGILLLEIMT 505
W Y E + Y+ + +S G+ L E++T
Sbjct: 183 PVFW----YAPECLKEYKFYYASDVWSFGVTLYELLT 215
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 94 IVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 153
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 154 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 208
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 209 IVLWEVMSYGERPYWEM 225
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 401 EFMPNGSLESWLHPNEATRR---------LDLAEGLK-------IAVDI-PSNVLLDYDM 443
EFM GSL +L +E +++ +AEG+ I D+ +N+L+ +
Sbjct: 262 EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASL 321
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ DFGLAR + N +G + ++W A + K +S
Sbjct: 322 VCKIADFGLARVIEDNEYTAREGAK----------FPIKWTAPEAINFGSFTIKSDVWSF 371
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPC 553
GILL+EI+T G+ P M + +L M PE+ E +Y+ +++ E+ P
Sbjct: 372 GILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPT 431
Query: 554 MK 555
+
Sbjct: 432 FE 433
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGAVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLL 439
+ E+M GSL +L E + L L + + +A I S N+L+
Sbjct: 89 IVIEYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV 147
Query: 440 DYDMTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
++ V DFGLAR + N P+K + AA++G R+ K
Sbjct: 148 GENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYG----------RFTIKSD 197
Query: 493 GYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
+S GILL E+ T G+ P M + + M P E ++ + Q KD E
Sbjct: 198 VWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 550 DEP 552
+ P
Sbjct: 258 ERP 260
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ E M NGSL+S+L ++A + +A G+K D+ N+L++
Sbjct: 123 IVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
++ V DFGL+R L + + + W S I Y ++ +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I+L E+M+ G+RP EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 401 EFMPNGSLESWLHPNEATRR---------LDLAEGLK-------IAVDI-PSNVLLDYDM 443
EFM GSL +L +E +++ +AEG+ I D+ +N+L+ +
Sbjct: 89 EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASL 148
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ DFGLAR + N +G + ++W A + K +S
Sbjct: 149 VCKIADFGLARVIEDNEYTAREGAK----------FPIKWTAPEAINFGSFTIKSDVWSF 198
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPC 553
GILL+EI+T G+ P M + +L M PE+ E +Y+ +++ E+ P
Sbjct: 199 GILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPT 258
Query: 554 MK 555
+
Sbjct: 259 FE 260
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLL 439
+ E+M GSL +L E + L L + + +A I S N+L+
Sbjct: 89 IVIEYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV 147
Query: 440 DYDMTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
++ V DFGLAR + N P+K + AA++G R+ K
Sbjct: 148 GENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSD 197
Query: 493 GYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
+S GILL E+ T G+ P M + + M P E ++ + Q KD E
Sbjct: 198 VWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 550 DEP 552
+ P
Sbjct: 258 ERP 260
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK----- 490
N+ L D+T +GDFGLA V + G + GSI + V R Q K
Sbjct: 136 NIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF 190
Query: 491 -GKGYSCGILLLEIMTGKRP 509
Y+ GI+L E+MTG+ P
Sbjct: 191 QSDVYAFGIVLYELMTGQLP 210
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK----- 490
N+ L D+T +GDFGLA V + G + GSI + V R Q K
Sbjct: 134 NIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF 188
Query: 491 -GKGYSCGILLLEIMTGKRP 509
Y+ GI+L E+MTG+ P
Sbjct: 189 QSDVYAFGIVLYELMTGQLP 208
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY 487
I D+ SN + L D+T +GDFGLA V + G + GSI + V R
Sbjct: 153 IHRDLKSNNIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRM 207
Query: 488 QHK------GKGYSCGILLLEIMTGKRP 509
Q K Y+ GI+L E+MTG+ P
Sbjct: 208 QDKNPYSFQSDVYAFGIVLYELMTGQLP 235
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK----- 490
N+ L D+T +GDFGLA V + G + GSI + V R Q K
Sbjct: 139 NIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF 193
Query: 491 -GKGYSCGILLLEIMTGKRP 509
Y+ GI+L E+MTG+ P
Sbjct: 194 QSDVYAFGIVLYELMTGQLP 213
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK----- 490
N+ L D+T +GDFGLA V + G + GSI + V R Q K
Sbjct: 134 NIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF 188
Query: 491 -GKGYSCGILLLEIMTGKRP 509
Y+ GI+L E+MTG+ P
Sbjct: 189 QSDVYAFGIVLYELMTGQLP 208
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK----- 490
N+ L D+T +GDFGLA V + G + GSI + V R Q K
Sbjct: 139 NIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF 193
Query: 491 -GKGYSCGILLLEIMTGKRP 509
Y+ GI+L E+MTG+ P
Sbjct: 194 QSDVYAFGIVLYELMTGQLP 213
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY 487
I D+ SN + L D+T +GDFGLA V + G + GSI + V R
Sbjct: 154 IHRDLKSNNIFLHEDLTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRM 208
Query: 488 QHK------GKGYSCGILLLEIMTGKRP 509
Q K Y+ GI+L E+MTG+ P
Sbjct: 209 QDKNPYSFQSDVYAFGIVLYELMTGQLP 236
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 401 EFMPNGSLESWLHPNEATRR---------LDLAEGLK-------IAVDI-PSNVLLDYDM 443
EFM GSL +L +E +++ +AEG+ I D+ +N+L+ +
Sbjct: 256 EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASL 315
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEI 503
+ DFGLAR P+K + A +GS + K +S GILL+EI
Sbjct: 316 VCKIADFGLAR---VGAKFPIKWTAPEAINFGS----------FTIKSDVWSFGILLMEI 362
Query: 504 MT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMK 555
+T G+ P M + +L M PE+ E +Y+ +++ E+ P +
Sbjct: 363 VTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFE 417
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 47 LHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFS 106
+H + PPS SFT L+ N F + G L L L RN L +
Sbjct: 344 IHMVCPPSPSSFT-------FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396
Query: 107 IGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP 166
+ +N+ L L SL S LN + T ES+ +LNLS N L GS+ +
Sbjct: 397 LMT-KNMSSLETLDVSLNS--LNSHAYDRTCAWAESI------LVLNLSSNMLTGSVFR- 446
Query: 167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNR-SKFEHLL 225
L + +D HNN S+P +V L QEL+ + + L +P + +R + +++
Sbjct: 447 -CLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503
Query: 226 LGGNMFQGRIP 236
L N + P
Sbjct: 504 LHDNPWDCTCP 514
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 92 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 150
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 151 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 200
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 201 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 260
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 92 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 150
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 151 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 200
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 201 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 260
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 81 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 139
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 140 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 189
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 190 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 249
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 92 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLAAANILVGEN 150
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 151 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 200
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 201 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 260
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 92 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 150
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 151 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 200
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 201 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 260
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 83 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 141
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 142 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 191
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 192 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 251
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 341 EYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 399
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 400 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 449
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q K+ E+ P
Sbjct: 450 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 509
Query: 553 CMK 555
+
Sbjct: 510 TFE 512
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 40/155 (25%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA--VWGSIGYN--MEWVARYQH 489
P N+LLD + + DFG A+++P +VT + G + A V + YN ++W
Sbjct: 134 PENILLDKNGHIKITDFGFAKYVP-DVTYXLCGTPDYIAPEVVSTKPYNKSIDW------ 186
Query: 490 KGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF-----CEMALP----ESVMELVYSRL 540
+S GIL+ E++ G P F D ++ + E+ P E V +L+ SRL
Sbjct: 187 ----WSFGILIYEMLAGYTP----FYDSNTMKTYEKILNAELRFPPFFNEDVKDLL-SRL 237
Query: 541 -----------LQGVDKDAEDEPCMKAKIRECLTS 564
LQ +D ++ P K + E L S
Sbjct: 238 ITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLS 272
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARY 487
+N+L+ ++ V DFGLAR + N P+K + AA++G R+
Sbjct: 143 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RF 192
Query: 488 QHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGV 544
K +S GILL E+ T G+ P M + + M P E ++ + Q
Sbjct: 193 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 252
Query: 545 DKDAEDEP 552
KD E+ P
Sbjct: 253 RKDPEERP 260
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARY 487
+N+L+ ++ V DFGLAR + N P+K + AA++G R+
Sbjct: 143 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RF 192
Query: 488 QHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGV 544
K +S GILL E+ T G+ P M + + M P E ++ + Q
Sbjct: 193 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 252
Query: 545 DKDAEDEP 552
KD E+ P
Sbjct: 253 RKDPEERP 260
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 82 EYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 140
Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 141 LVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 190
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q K+ E+ P
Sbjct: 191 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 250
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 258 EYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 316
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 317 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 366
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q K+ E+ P
Sbjct: 367 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 426
Query: 553 CMK 555
+
Sbjct: 427 TFE 429
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 258 EYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 316
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 317 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 366
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q K+ E+ P
Sbjct: 367 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 426
Query: 553 CMK 555
+
Sbjct: 427 TFE 429
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 258 EYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 316
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 317 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 366
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q K+ E+ P
Sbjct: 367 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 426
Query: 553 CMK 555
+
Sbjct: 427 TFE 429
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 434 PSNVLLDYDMTAY-VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
P N+LL T + DFG A + T++TN KG + A G N Y K
Sbjct: 134 PPNLLLVAGGTVLKICDFGTACDIQTHMTN-NKGSAAWMAPEVFEGSN------YSEKCD 186
Query: 493 GYSCGILLLEIMTGKRPTDEM----FADCLSLHNFCEMALPESVMELVYSRLLQGVDKDA 548
+S GI+L E++T ++P DE+ F ++HN L +++ + + S + + KD
Sbjct: 187 VFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDP 246
Query: 549 EDEPCMKAKIRECLTSLGR 567
P M+ +I + +T L R
Sbjct: 247 SQRPSME-EIVKIMTHLMR 264
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 259 EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 317
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGL R + N P+K + AA++G R+ K +S
Sbjct: 318 LVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 367
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q KD E+ P
Sbjct: 368 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERP 427
Query: 553 CMK 555
+
Sbjct: 428 TFE 430
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 434 PSNVLLDYDMTAY-VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
P N+LL T + DFG A + T++TN KG + A G N Y K
Sbjct: 133 PPNLLLVAGGTVLKICDFGTACDIQTHMTN-NKGSAAWMAPEVFEGSN------YSEKCD 185
Query: 493 GYSCGILLLEIMTGKRPTDEM----FADCLSLHNFCEMALPESVMELVYSRLLQGVDKDA 548
+S GI+L E++T ++P DE+ F ++HN L +++ + + S + + KD
Sbjct: 186 VFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDP 245
Query: 549 EDEPCMKAKIRECLTSLGR 567
P M+ +I + +T L R
Sbjct: 246 SQRPSME-EIVKIMTHLMR 263
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 39/180 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
E+M GSL +L E + L L + + +A I S N+L+ +
Sbjct: 85 EYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 143
Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
+ V DFGLAR + N P+K + AA++G R+ K +S
Sbjct: 144 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 193
Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL E+ T G+ P M + + M P E ++ + Q K+ E+ P
Sbjct: 194 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 253
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHK 490
P+N+++ V DFG+AR + + + +AAV G+ Y AR +
Sbjct: 144 PANIMISATNAVKVMDFGIARA----IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 491 GKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV 532
YS G +L E++TG+ P D ++ + E +P S
Sbjct: 200 SDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIPPSA 241
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + + DFGLAR + N KG + W + + + Y K +S
Sbjct: 229 NILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKI--YSTKSDVWS 286
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M PE +Y +L +D +
Sbjct: 287 YGVLLWEIFSLGGSPYPGVQMDEDF--CSRLREGMRMRAPEYSTPEIYQIMLDCWHRDPK 344
Query: 550 DEP 552
+ P
Sbjct: 345 ERP 347
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 36/142 (25%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
+ EFM NG+L+++L ++ + +A G++ D+ N+L++
Sbjct: 121 IVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNS 180
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVA-------RYQHKGK 492
++ V DFGL+R + + + AV+ + G + W A ++
Sbjct: 181 NLVCKVSDFGLSRVI----------EDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASD 230
Query: 493 GYSCGILLLEIMT-GKRPTDEM 513
+S GI++ E+M+ G+RP +M
Sbjct: 231 VWSYGIVMWEVMSYGERPYWDM 252
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 30/136 (22%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS--------------------N 436
++ E++ GSL LH + A +LD L +A D+ N
Sbjct: 110 SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPN 169
Query: 437 VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQ---HKGKG 493
+L+D T V DFGL+R + + S SAA G+ + V R + K
Sbjct: 170 LLVDKKYTVKVCDFGLSRLKASTFLS-----SKSAA--GTPEWMAPEVLRDEPSNEKSDV 222
Query: 494 YSCGILLLEIMTGKRP 509
YS G++L E+ T ++P
Sbjct: 223 YSFGVILWELATLQQP 238
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY 487
I D+ SN + L D+T +GDFGLA + G + GSI + V R
Sbjct: 154 IHRDLKSNNIFLHEDLTVKIGDFGLA-----TEKSRWSGSHQFEQLSGSILWMAPEVIRM 208
Query: 488 QHK------GKGYSCGILLLEIMTGKRP 509
Q K Y+ GI+L E+MTG+ P
Sbjct: 209 QDKNPYSFQSDVYAFGIVLYELMTGQLP 236
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY 487
I D+ SN + L D+T +GDFGLA + G + GSI + V R
Sbjct: 146 IHRDLKSNNIFLHEDLTVKIGDFGLA-----TEKSRWSGSHQFEQLSGSILWMAPEVIRM 200
Query: 488 QHK------GKGYSCGILLLEIMTGKRP 509
Q K Y+ GI+L E+MTG+ P
Sbjct: 201 QDKNPYSFQSDVYAFGIVLYELMTGQLP 228
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK----- 490
N+ L D+T +GDFGLA + G + GSI + V R Q K
Sbjct: 134 NIFLHEDLTVKIGDFGLA-----TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF 188
Query: 491 -GKGYSCGILLLEIMTGKRP 509
Y+ GI+L E+MTG+ P
Sbjct: 189 QSDVYAFGIVLYELMTGQLP 208
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARY 487
+N+L+ ++ V DFGLAR + N P+K + AA++G R+
Sbjct: 140 ANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYG----------RF 189
Query: 488 QHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGV 544
K +S GILL E+ T G+ P M + + M P E ++ + Q
Sbjct: 190 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 249
Query: 545 DKDAEDEP 552
K+ E+ P
Sbjct: 250 RKEPEERP 257
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR- 486
I D+ SN + L D T +GDFGLA V + G + GSI + V R
Sbjct: 130 IHRDLKSNNIFLHEDNTVKIGDFGLA-----TVKSRWSGSHQFEQLSGSILWMAPEVIRM 184
Query: 487 -----YQHKGKGYSCGILLLEIMTGKRP 509
Y + Y+ GI+L E+MTG+ P
Sbjct: 185 QDSNPYSFQSDVYAFGIVLYELMTGQLP 212
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARY 487
+N+L+ ++ V DFGLAR + N P+K + AA++G R+
Sbjct: 140 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RF 189
Query: 488 QHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGV 544
K +S GILL E+ T G+ P M + + M P E ++ + Q
Sbjct: 190 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 249
Query: 545 DKDAEDEP 552
K+ E+ P
Sbjct: 250 RKEPEERP 257
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 50/221 (22%)
Query: 391 GGNDFKALAFEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS-- 435
G D + FE+M +G L +L P +A L L++ L IA I S
Sbjct: 87 GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGM 146
Query: 436 ----------------NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GS 476
N L+ ++ +GDFG++R + + + G + W S
Sbjct: 147 VYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPES 206
Query: 477 IGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM----FADCLSLHNFCEMALPES 531
I Y ++ + +S G++L EI T GK+P ++ +C++ E P
Sbjct: 207 IMYR-----KFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLER--PRV 259
Query: 532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIAS 572
+ VY +L + EP + I+E L +G A+
Sbjct: 260 CPKEVYDVMLGCWQR----EPQQRLNIKEIYKILHALGKAT 296
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 15/150 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GSIGYNMEWVARYQHKGK 492
N +L DMT V DFGL+R + + S W S+ N+ Y
Sbjct: 167 NCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNL-----YTVHSD 221
Query: 493 GYSCGILLLEIMT-GKRPTDEMFADCLSLHNFC----EMALPESVMELVYSRLLQGVDKD 547
++ G+ + EIMT G+ P + + ++N+ + P ME VY + Q D
Sbjct: 222 VWAFGVTMWEIMTRGQTPYAGI--ENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSAD 279
Query: 548 AEDEPCMKAKIRECLTSLGRIGIASLTETP 577
+ P E LG + + S ++ P
Sbjct: 280 PKQRPSFTCLRMELENILGHLSVLSTSQDP 309
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 27/103 (26%)
Query: 423 LAEGLKIAVDI--------PSNVLLDYDMTAYVGDFGLARFL-PTNVTNPMKGQSNSAAV 473
+ +G+K A D+ P N+L+D + T + DFG+A+ L T++T Q+N V
Sbjct: 120 ILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT-----QTNH--V 172
Query: 474 WGSIGYNMEWVARYQHKGKG-------YSCGILLLEIMTGKRP 509
G++ Y + Q KG+ YS GI+L E++ G+ P
Sbjct: 173 LGTVQY----FSPEQAKGEATDECTDIYSIGIVLYEMLVGEPP 211
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 35/134 (26%)
Query: 401 EFMPNGSLESWLHPNEATRRL---------DLAEGLK-------IAVDI-PSNVLLDYDM 443
EFM GSL +L +E + L +AEG+ I D+ +NVL+ +
Sbjct: 87 EFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESL 146
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR-------YQHKGKGYSC 496
+ DFGLAR + N +G + ++W A + K +S
Sbjct: 147 MCKIADFGLARVIEDNEYTAREGAK----------FPIKWTAPEAINFGCFTIKSNVWSF 196
Query: 497 GILLLEIMT-GKRP 509
GILL EI+T GK P
Sbjct: 197 GILLYEIVTYGKIP 210
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRR--------LDLAEGLK-------IAVDIPS-NVLLD 440
L FEFM +G L +L LD+ EG+ I D+ + N L+
Sbjct: 98 CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 157
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILL 500
+ V DFG+ RF+ + G + W S + +RY K +S G+L+
Sbjct: 158 ENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASP--EVFSFSRYSSKSDVWSFGVLM 214
Query: 501 LEIMT-GKRPTD 511
E+ + GK P +
Sbjct: 215 WEVFSEGKIPYE 226
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRR--------LDLAEGLK-------IAVDIPS-NVLLD 440
L FEFM +G L +L LD+ EG+ I D+ + N L+
Sbjct: 76 CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 135
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILL 500
+ V DFG+ RF+ + G + W S + +RY K +S G+L+
Sbjct: 136 ENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASP--EVFSFSRYSSKSDVWSFGVLM 192
Query: 501 LEIMT-GKRPTD 511
E+ + GK P +
Sbjct: 193 WEVFSEGKIPYE 204
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRR--------LDLAEGLK-------IAVDIPS-NVLLD 440
L FEFM +G L +L LD+ EG+ I D+ + N L+
Sbjct: 78 CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 137
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILL 500
+ V DFG+ RF+ + G + W S + +RY K +S G+L+
Sbjct: 138 ENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASP--EVFSFSRYSSKSDVWSFGVLM 194
Query: 501 LEIMT-GKRPTD 511
E+ + GK P +
Sbjct: 195 WEVFSEGKIPYE 206
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDIPS--------NVLLDYDMT 444
E+M NGSL+++L N+ + + G+K D+ + N+L++ ++
Sbjct: 110 EYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLV 169
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WG---SIGYNMEWVARYQHKGKGYSCGILL 500
V DFG++R L + + + W +I Y ++ +S GI++
Sbjct: 170 CKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR-----KFTSASDVWSYGIVM 224
Query: 501 LEIMT-GKRPTDEM 513
E+M+ G+RP +M
Sbjct: 225 WEVMSYGERPYWDM 238
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRR--------LDLAEGLK-------IAVDIPS-NVLLD 440
L FEFM +G L +L LD+ EG+ I D+ + N L+
Sbjct: 78 CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEASVIHRDLAARNCLVG 137
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILL 500
+ V DFG+ RF+ + G + W S + +RY K +S G+L+
Sbjct: 138 ENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASP--EVFSFSRYSSKSDVWSFGVLM 194
Query: 501 LEIMT-GKRPTD 511
E+ + GK P +
Sbjct: 195 WEVFSEGKIPYE 206
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRR--------LDLAEGLK-------IAVDIPS-NVLLD 440
L FEFM +G L +L LD+ EG+ I D+ + N L+
Sbjct: 81 CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 140
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILL 500
+ V DFG+ RF+ + G + W S + +RY K +S G+L+
Sbjct: 141 ENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASP--EVFSFSRYSSKSDVWSFGVLM 197
Query: 501 LEIMT-GKRPTD 511
E+ + GK P +
Sbjct: 198 WEVFSEGKIPYE 209
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 36/139 (25%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+++L N+ + ++ G+K D+ N+L++ ++
Sbjct: 103 EYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNLV 162
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN--MEWVA-------RYQHKGKGYS 495
V DFGL+R L + + A + + G + W A ++ +S
Sbjct: 163 CKVSDFGLSRVL----------EDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWS 212
Query: 496 CGILLLEIMT-GKRPTDEM 513
GI++ E+++ G+RP EM
Sbjct: 213 YGIVMWEVVSYGERPYWEM 231
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+++L N+ + + G+K D+ N+L++ ++
Sbjct: 89 EYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLV 148
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WG---SIGYNMEWVARYQHKGKGYSCGILL 500
V DFG++R L + + + W +I Y ++ +S GI++
Sbjct: 149 CKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR-----KFTSASDVWSYGIVM 203
Query: 501 LEIMT-GKRPTDEM 513
E+M+ G+RP +M
Sbjct: 204 WEVMSYGERPYWDM 217
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+++L N+ + + G+K D+ N+L++ ++
Sbjct: 95 EYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLV 154
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WG---SIGYNMEWVARYQHKGKGYSCGILL 500
V DFG++R L + + + W +I Y ++ +S GI++
Sbjct: 155 CKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR-----KFTSASDVWSYGIVM 209
Query: 501 LEIMT-GKRPTDEM 513
E+M+ G+RP +M
Sbjct: 210 WEVMSYGERPYWDM 223
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHK 490
P+N+L+ V DFG+AR + + +AAV G+ Y AR +
Sbjct: 144 PANILISATNAVKVVDFGIARA----IADSGNSVXQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 491 GKGYSCGILLLEIMTGKRP 509
YS G +L E++TG+ P
Sbjct: 200 SDVYSLGCVLYEVLTGEPP 218
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHK 490
P+N+++ V DFG+AR + + + +AAV G+ Y AR +
Sbjct: 144 PANIMISATNAVKVMDFGIARA----IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 491 GKGYSCGILLLEIMTGKRP 509
YS G +L E++TG+ P
Sbjct: 200 SDVYSLGCVLYEVLTGEPP 218
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHK 490
P+N+++ V DFG+AR + + + +AAV G+ Y AR +
Sbjct: 144 PANIMISATNAVKVMDFGIAR----AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 491 GKGYSCGILLLEIMTGKRP 509
YS G +L E++TG+ P
Sbjct: 200 SDVYSLGCVLYEVLTGEPP 218
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 411 WLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPT--NVT-NPMKGQ 467
+LH N R D+ G N+LL D + + DFG++ FL T ++T N ++
Sbjct: 136 YLHKNGQIHR-DVKAG---------NILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185
Query: 468 SNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRP 509
W + ME V Y K +S GI +E+ TG P
Sbjct: 186 FVGTPCWMAPEV-MEQVRGYDFKADIWSFGITAIELATGAAP 226
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHK 490
P+N+++ V DFG+AR + + + +AAV G+ Y AR +
Sbjct: 144 PANIMISATNAVKVMDFGIARA----IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 491 GKGYSCGILLLEIMTGKRP 509
YS G +L E++TG+ P
Sbjct: 200 SDVYSLGCVLYEVLTGEPP 218
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 411 WLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPT--NVT-NPMKGQ 467
+LH N R D+ G N+LL D + + DFG++ FL T ++T N ++
Sbjct: 131 YLHKNGQIHR-DVKAG---------NILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 180
Query: 468 SNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRP 509
W + ME V Y K +S GI +E+ TG P
Sbjct: 181 FVGTPCWMAPEV-MEQVRGYDFKADIWSFGITAIELATGAAP 221
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTN---PMKGQS----NSAAVWGSIGYNMEWVAR 486
PSN+L++ + V DFGLAR + + + P QS A W M A+
Sbjct: 140 PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEXVATRWYRAPEVMLTSAK 199
Query: 487 YQHKGKGYSCGILLLEIMTGKRP 509
Y +SCG +L E+ +RP
Sbjct: 200 YSRAMDVWSCGCILAELFL-RRP 221
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHK 490
P+N+++ V DFG+AR + + + +AAV G+ Y AR +
Sbjct: 161 PANIMISATNAVKVMDFGIAR----AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 216
Query: 491 GKGYSCGILLLEIMTGKRP 509
YS G +L E++TG+ P
Sbjct: 217 SDVYSLGCVLYEVLTGEPP 235
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL V DFG+A LP + + ++ + W ++ +Y H+ +S
Sbjct: 163 NVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIH--FGKYTHQSDVWS 220
Query: 496 CGILLLEIMT 505
G+ + E+MT
Sbjct: 221 YGVTVWELMT 230
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTN---PMKGQSN----SAAVWGSIGYNMEWVAR 486
PSN+L++ + V DFGLAR + + + P QS A W M A+
Sbjct: 140 PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAK 199
Query: 487 YQHKGKGYSCGILLLEIMTGKRP 509
Y +SCG +L E+ +RP
Sbjct: 200 YSRAMDVWSCGCILAELFL-RRP 221
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTN---PMKGQSN----SAAVWGSIGYNMEWVAR 486
PSN+L++ + V DFGLAR + + + P QS A W M A+
Sbjct: 140 PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPEVMLTSAK 199
Query: 487 YQHKGKGYSCGILLLEIMTGKRP 509
Y +SCG +L E+ +RP
Sbjct: 200 YSRAMDVWSCGCILAELFL-RRP 221
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 30/136 (22%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS--------------------N 436
++ E++ GSL LH + A +LD L +A D+ N
Sbjct: 110 SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRDLKSPN 169
Query: 437 VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQ---HKGKG 493
+L+D T V DFGL+R + S AA G+ + V R + K
Sbjct: 170 LLVDKKYTVKVCDFGLSRLKASXFL-----XSKXAA--GTPEWMAPEVLRDEPSNEKSDV 222
Query: 494 YSCGILLLEIMTGKRP 509
YS G++L E+ T ++P
Sbjct: 223 YSFGVILWELATLQQP 238
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 140 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 199
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 200 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 259
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 260 EYCPDPLYEVMLKCWHPKAEMRP 282
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 145 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 204
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 205 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 264
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 265 EYCPDPLYEVMLKCWHPKAEMRP 287
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQH------ 489
N+ L +T +GDFGLA V + G GS+ + V R Q
Sbjct: 162 NIFLHEGLTVKIGDFGLA-----TVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSF 216
Query: 490 KGKGYSCGILLLEIMTGKRP 509
+ YS GI+L E+MTG+ P
Sbjct: 217 QSDVYSYGIVLYELMTGELP 236
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWGSIGYNMEWVARY 487
+N+L+ + + DFGLAR + N P+K + AA++G R+
Sbjct: 134 ANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYG----------RF 183
Query: 488 QHKGKGYSCGILLLEIMTGKR 508
K +S GILL E++T R
Sbjct: 184 TIKSDVWSFGILLTELVTKGR 204
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 199 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 258
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 259 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 318
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 319 EYCPDPLYEVMLKCWHPKAEMRP 341
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA---RYQHK 490
P N+LLD + D GLA +P +GQ+ V G++GY V RY
Sbjct: 314 PENILLDDHGHIRISDLGLAVHVP-------EGQTIKGRV-GTVGYMAPEVVKNERYTFS 365
Query: 491 GKGYSCGILLLEIMTGKRP 509
++ G LL E++ G+ P
Sbjct: 366 PDWWALGCLLYEMIAGQSP 384
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQ---HK 490
P N+LLD + + DFGL++ + + + + G++ Y V Q H
Sbjct: 158 PENILLDEEGHIKLTDFGLSK-------EAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHS 210
Query: 491 GKGYSCGILLLEIMTGKRP 509
+S G+L+ E++TG P
Sbjct: 211 ADWWSYGVLMFEMLTGSLP 229
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 141 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 200
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 201 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 260
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 261 EYCPDPLYEVMLKCWHPKAEMRP 283
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA---RYQHK 490
P N+LLD + D GLA +P +GQ+ V G++GY V RY
Sbjct: 314 PENILLDDHGHIRISDLGLAVHVP-------EGQTIKGRV-GTVGYMAPEVVKNERYTFS 365
Query: 491 GKGYSCGILLLEIMTGKRP 509
++ G LL E++ G+ P
Sbjct: 366 PDWWALGCLLYEMIAGQSP 384
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 35/134 (26%)
Query: 401 EFMPNGSLESWLHPNEATRRL---------DLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M GSL +L +E + L +AEG+ I D+ +NVL+ +
Sbjct: 88 EYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESL 147
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR-------YQHKGKGYSC 496
+ DFGLAR + N +G + ++W A + K +S
Sbjct: 148 MCKIADFGLARVIEDNEYTAREGAK----------FPIKWTAPEAINFGCFTIKSDVWSF 197
Query: 497 GILLLEIMT-GKRP 509
GILL EI+T GK P
Sbjct: 198 GILLYEIVTYGKIP 211
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 138 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 197
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 198 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 257
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 258 EYCPDPLYEVMLKCWHPKAEMRP 280
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR- 486
I D+ SN + L D T +GDFGLA + G + GSI + V R
Sbjct: 142 IHRDLKSNNIFLHEDNTVKIGDFGLA-----TEKSRWSGSHQFEQLSGSILWMAPEVIRM 196
Query: 487 -----YQHKGKGYSCGILLLEIMTGKRP 509
Y + Y+ GI+L E+MTG+ P
Sbjct: 197 QDSNPYSFQSDVYAFGIVLYELMTGQLP 224
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 140 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 199
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 200 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 259
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 260 EYCPDPLYEVMLKCWHPKAEMRP 282
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + + ++ +
Sbjct: 141 LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKL 200
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 201 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 260
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 261 EYCPDPLYEVMLKCWHPKAEMRP 283
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 429 IAVDIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR- 486
I D+ SN + L D T +GDFGLA + G + GSI + V R
Sbjct: 142 IHRDLKSNNIFLHEDNTVKIGDFGLA-----TEKSRWSGSHQFEQLSGSILWMAPEVIRM 196
Query: 487 -----YQHKGKGYSCGILLLEIMTGKRP 509
Y + Y+ GI+L E+MTG+ P
Sbjct: 197 QDSNPYSFQSDVYAFGIVLYELMTGQLP 224
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL V DFG+A LP + + ++ + W ++ +Y H+ +S
Sbjct: 145 NVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIH--FGKYTHQSDVWS 202
Query: 496 CGILLLEIMT 505
G+ + E+MT
Sbjct: 203 YGVTVWELMT 212
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 139 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKL 198
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 199 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 258
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 259 EYCPDPLYEVMLKCWHPKAEMRP 281
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 29 SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-PKYF 87
S L + LTYL L N L + D TNL + + NQ +P G+ K
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV----ENQLQS-LPDGVFDKLT 133
Query: 88 NLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL-EN 145
NL L L N L S+P + KL NL +L+L+ N L +PE + +
Sbjct: 134 NLTYLNLAHNQLQ-SLPKGVFDKLTNLT------------ELDLSYNQLQS-LPEGVFDK 179
Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA--HNN 182
LT L+ L L N L P G+F L+S+ + H+N
Sbjct: 180 LTQLKDLRLYQNQLKSV---PDGVFDRLTSLQYIWLHDN 215
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 135 LTGNIPESLEN-----LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF---AHNNFNGS 186
LTGN +SL N LT+L+ L L N L P G+F L+++ + AHN S
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL---PDGVFDKLTNLTYLNLAHNQLQ-S 147
Query: 187 LPLEV-GSLSNTQELDFSEHML 207
LP V L+N ELD S + L
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQL 169
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 435 SNVLLDYDMTAYVGDFGLAR--FLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
N+LLD D + DFG+ + L TN G + A +G +Y H
Sbjct: 148 DNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILLG------QKYNHSVD 201
Query: 493 GYSCGILLLEIMTGKRP 509
+S G+LL E++ G+ P
Sbjct: 202 WWSFGVLLYEMLIGQSP 218
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 29 SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-PKYF 87
S L + LTYL L N L + D TNL + + NQ +P G+ K
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV----ENQLQS-LPDGVFDKLT 133
Query: 88 NLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL-EN 145
NL L L N L S+P + KL NL +L+ +NN ++PE + +
Sbjct: 134 NLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLD-------------LDNNQLQSLPEGVFDK 179
Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
LT L+ L+L+ N L P G+F L+S+
Sbjct: 180 LTQLKQLSLNDNQLKSV---PDGVFDRLTSL 207
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 435 SNVLLDYDMTAYVGDFGLAR--FLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
N+LLD D + DFG+ + L TN G + A +G +Y H
Sbjct: 147 DNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAPEILLG------QKYNHSVD 200
Query: 493 GYSCGILLLEIMTGKRP 509
+S G+LL E++ G+ P
Sbjct: 201 WWSFGVLLYEMLIGQSP 217
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L EF+P GSL +L ++ R+D + +G++ I D
Sbjct: 85 SAGRRNLKLIMEFLPYGSLREYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 142
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 143 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 200
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 201 SDVWSFGVVLYELFT 215
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 22/88 (25%)
Query: 434 PSNVLLDYDMTAYVGDFGLA------RFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY 487
P NVLLD M A + DFGL+ FL T+ +P N AA E ++
Sbjct: 139 PENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSP-----NYAAP--------EVISGR 185
Query: 488 QHKGKG---YSCGILLLEIMTGKRPTDE 512
+ G +SCG++L ++ G P D+
Sbjct: 186 LYAGPEVDIWSCGVILYALLCGTLPFDD 213
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 20/150 (13%)
Query: 423 LAEGLKIAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM 481
LAE + D+ + N +LD T V DFGLAR + + + S +
Sbjct: 140 LAEQKFVHRDLAARNCMLDESFTVKVADFGLAR-------DILDREYYSVQQHRHARLPV 192
Query: 482 EWVA-------RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC----EMALPE 530
+W A R+ K +S G+LL E++T P D L +F + PE
Sbjct: 193 KWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHFLAQGRRLPQPE 251
Query: 531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRE 560
+ +Y + Q + D P + + E
Sbjct: 252 YCPDSLYQVMQQCWEADPAVRPTFRVLVGE 281
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 132 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 191
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 192 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 251
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 252 EYCPDPLYEVMLKCWHPKAEMRP 274
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NG+L+ +L + + +A G+K ++ N+L++ ++
Sbjct: 126 EYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLV 185
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFGL+R L +P + S G I + W A ++ +S G
Sbjct: 186 CKVSDFGLSRVLE---DDPEATYTTSG---GKI--PIRWTAPEAISYRKFTSASDVWSFG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
I++ E+MT G+RP E+
Sbjct: 238 IVMWEVMTYGERPYWEL 254
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 159 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 218
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 219 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 278
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 279 EYCPDPLYEVMLKCWHPKAEMRP 301
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 140 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 199
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 200 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 259
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 260 EYCPDPLYEVMLKCWHPKAEMRP 282
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 98/259 (37%), Gaps = 58/259 (22%)
Query: 37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDR 96
LT ++ +N L I P NL+ + IL NQ A P + NL L L
Sbjct: 65 LTQINFSNNQLTDITP-----LKNLTKLVDIL-MNNNQIADITP--LANLTNLTGLTLFN 116
Query: 97 NCLAGSIPFSIGKLQNLQKLNPLATSLYSF-------------QLNLAENNLTGNIPESL 143
N + I L+NL LN L S + QLN + N +T P L
Sbjct: 117 NQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--L 169
Query: 144 ENLTSLQILNLSCNHLGG--------------------SIPKPSGLFSTLSSIDFAHNNF 183
NLT+L+ L++S N + S P G+ + L + N
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 184 N--GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
G+L SL+N +LD + + +S+ P L +K L LG N I P G
Sbjct: 230 KDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG- 281
Query: 242 FKGTIDLNLSHNNLSGTIP 260
+L L+ N L P
Sbjct: 282 LTALTNLELNENQLEDISP 300
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 135 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 194
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 195 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 254
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 255 EYCPDPLYEVMLKCWHPKAEMRP 277
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 158 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 217
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 218 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 277
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 278 EYCPDPLYEVMLKCWHPKAEMRP 300
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 138 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 197
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 198 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 257
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 258 EYCPDPLYEVMLKCWHPKAEMRP 280
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNSAA---VWGSIGYNMEWVARYQH 489
P N+LLD ++ + DFGL+ + N G N AA + G + E
Sbjct: 136 PENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDV---- 191
Query: 490 KGKGYSCGILLLEIMTGKRP-TDEMFADCLSLHNFCEMALPE 530
+SCGI+L ++ G+ P DE + N C +P+
Sbjct: 192 ----WSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPD 229
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 137 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 196
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 197 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 256
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 257 EYCPDPLYEVMLKCWHPKAEMRP 279
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 29/133 (21%)
Query: 398 LAFEFMPNGSLESWLHPNEA-------TRRLDL----AEGLK-------IAVDIPS-NVL 438
L +++M NG+L+ L+ ++ +RL++ A GL I D+ S N+L
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINIL 171
Query: 439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSN-SAAVWGSIGY-NMEWV--ARYQHKGKGY 494
LD + + DFG+++ GQ++ V G++GY + E+ R K Y
Sbjct: 172 LDENFVPKITDFGISK------KGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVY 225
Query: 495 SCGILLLEIMTGK 507
S G++L E++ +
Sbjct: 226 SFGVVLFEVLCAR 238
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 139 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 198
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 199 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 258
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 259 EYCPDPLYEVMLKCWHPKAEMRP 281
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 421 LDLAEGLK-------IAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA 472
L +A+G+K + D+ + N +LD T V DFGLAR + + ++ +
Sbjct: 140 LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKL 199
Query: 473 VWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT-GKRPTDEM--FADCLSLHNFCEMALP 529
+ ++ K +S G+LL E+MT G P ++ F + L + P
Sbjct: 200 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 259
Query: 530 ESVMELVYSRLLQGVDKDAEDEP 552
E + +Y +L+ AE P
Sbjct: 260 EYCPDPLYEVMLKCWHPKAEMRP 282
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 34/135 (25%)
Query: 401 EFMPNGSLESWLHPN----EATRRL----DLAEGLK-------IAVDIPS-NVLLDYDMT 444
E++ NG L ++L + E ++ L D+ EG+ I D+ + N L+D D+
Sbjct: 83 EYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLC 142
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFG+ R++ + Q S+ + ++W A +Y K ++ G
Sbjct: 143 VKVSDFGMTRYV-------LDDQYVSSV---GTKFPVKWSAPEVFHYFKYSSKSDVWAFG 192
Query: 498 ILLLEIMT-GKRPTD 511
IL+ E+ + GK P D
Sbjct: 193 ILMWEVFSLGKMPYD 207
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVL+ + DFGLAR L + T W ++ + R+ H+ +S
Sbjct: 149 NVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILR--RRFTHQSDVWS 206
Query: 496 CGILLLEIMT-GKRPTD 511
G+ + E+MT G +P D
Sbjct: 207 YGVTVWELMTFGAKPYD 223
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL A +GDFGLAR + + +KG + W + + V Y + +S
Sbjct: 188 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV--YTVQSDVWS 245
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 246 YGILLWEIFS 255
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL A +GDFGLAR + + +KG + W + + V Y + +S
Sbjct: 182 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV--YTVQSDVWS 239
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 240 YGILLWEIFS 249
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 95 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 154
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 155 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 204
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 205 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 263
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL A +GDFGLAR + + +KG + W + + V Y + +S
Sbjct: 194 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV--YTVQSDVWS 251
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 252 YGILLWEIFS 261
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL A +GDFGLAR + + +KG + W + + V Y + +S
Sbjct: 190 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV--YTVQSDVWS 247
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 248 YGILLWEIFS 257
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL A +GDFGLAR + + +KG + W + + V Y + +S
Sbjct: 196 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV--YTVQSDVWS 253
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 254 YGILLWEIFS 263
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 146
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 147 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 197 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 255
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 88 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 147
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 148 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 197
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 198 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 256
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVLL A +GDFGLAR + + +KG + W + + V Y + +S
Sbjct: 194 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV--YTVQSDVWS 251
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 252 YGILLWEIFS 261
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 89 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 148
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 149 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 198
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 199 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 257
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 146
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 147 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 197 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 255
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 82 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 141
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 142 SCKIADFGLARLIEDNEYTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 191
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 192 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 250
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 93 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 152
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 153 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 202
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 203 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 261
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 96 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 155
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 156 SCKIADFGLARLIEDNEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 205
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 206 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 264
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 100 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 157
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 158 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 215
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 216 SDVWSFGVVLYELFT 230
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 80 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 137
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 138 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 195
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 196 SDVWSFGVVLYELFT 210
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 435 SNVLLDYDMTAYVGDFGLA-RFLPTNVTNPMKGQSNS------AAVWGSIGYNMEWVARY 487
NVLL D+TA + DFGLA RF P GQ + + G+I + + R
Sbjct: 152 KNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRI 211
Query: 488 QHKGKGYSCGILLLEIMTGKRPTD 511
Y+ G++L E+++ + D
Sbjct: 212 DM----YAMGLVLWELVSRCKAAD 231
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RY 487
+N+L+ ++ + DFGLAR + N +G + ++W A +
Sbjct: 134 ANILVSDTLSCKIADFGLARLIEDNEYTAREGAK----------FPIKWTAPEAINYGTF 183
Query: 488 QHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGV 544
K +S GILL EI+T G+ P M + +L M P++ E +Y +
Sbjct: 184 TIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCW 243
Query: 545 DKDAEDEP 552
+ ED P
Sbjct: 244 KERPEDRP 251
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 178 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 235
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 236 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 289
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 290 GEPSQRPTFSELVEHLG 306
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 46/147 (31%)
Query: 398 LAFEFMPNGSLESWL----HPNEATRRL----DLAEGLK---------IAVDIPS-NVLL 439
+ EF+P G L L HP + + +L D+A G++ + D+ S N+ L
Sbjct: 98 MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFL 157
Query: 440 -----DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA--------- 485
+ + A V DFGL+ Q + +V G +G N +W+A
Sbjct: 158 QSLDENAPVCAKVADFGLS-------------QQSVHSVSGLLG-NFQWMAPETIGAEEE 203
Query: 486 RYQHKGKGYSCGILLLEIMTGKRPTDE 512
Y K YS ++L I+TG+ P DE
Sbjct: 204 SYTEKADTYSFAMILYTILTGEGPFDE 230
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 85 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 142
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 143 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 200
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 201 SDVWSFGVVLYELFT 215
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 82 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 139
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 140 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 197
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 198 SDVWSFGVVLYELFT 212
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 81 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 138
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 139 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 196
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 197 SDVWSFGVVLYELFT 211
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 86 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 143
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 144 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 201
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 202 SDVWSFGVVLYELFT 216
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 87 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 144
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 145 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 202
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 203 SDVWSFGVVLYELFT 217
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 82 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 139
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 140 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 197
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 198 SDVWSFGVVLYELFT 212
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 89 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 146
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 147 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 204
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 205 SDVWSFGVVLYELFT 219
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 100 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 157
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 158 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 215
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 216 SDVWSFGVVLYELFT 230
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 113 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 170
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 171 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 228
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 229 SDVWSFGVVLYELFT 243
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 146
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 147 SCKIADFGLARLIEDNEYTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 197 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 255
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 88 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 145
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 146 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 203
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 204 SDVWSFGVVLYELFT 218
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 93 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 152
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 153 SCKIADFGLARLIEDNEYTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 202
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 203 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 261
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLD-----LAEGLKIAVDIPSNVLL 439
S + G + + L EF+ + L E RR D L LK P+NV L
Sbjct: 95 ASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK-----PANVFL 149
Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEWVAR--YQHKGKGYSC 496
D +GDFGLAR L + S + A G+ Y + E + R Y K +S
Sbjct: 150 DGKQNVKLGDFGLARILNHDT-------SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSL 202
Query: 497 GILLLEI 503
G LL E+
Sbjct: 203 GCLLYEL 209
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 97 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 156
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 157 SCKIADFGLARLIEDNEYTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 206
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 207 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 265
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPT-NVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
P NVLLD M A + DFGL+ + G N AA E ++ + G
Sbjct: 139 PENVLLDAHMNAKIADFGLSNMMSDGEFLRDSCGSPNYAAP--------EVISGRLYAGP 190
Query: 493 G---YSCGILLLEIMTGKRPTDE 512
+SCG++L ++ G P D+
Sbjct: 191 EVDIWSCGVILYALLCGTLPFDD 213
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 92 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 151
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + N +G + ++W A + K +S
Sbjct: 152 SCKIADFGLARLIEDNEYTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 201
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 202 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 260
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 97/240 (40%), Gaps = 37/240 (15%)
Query: 10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTY---LSLFSNNLHGIIPPSLDSFTNLSTKLR 66
L LQ LNFGN + L P + LT L + SN + I L TNL +
Sbjct: 150 LTSLQQLNFGNQV------TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLES--- 198
Query: 67 ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN--------- 117
L A NQ + P GI NL +L L+ N L ++ L NL L+
Sbjct: 199 -LIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 253
Query: 118 -PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
PL+ +L L N ++ P L LT+L L L+ N L P + L+ +
Sbjct: 254 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISN--LKNLTYL 309
Query: 177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
NN + P V SL+ Q L FS + +SD +L N + L G N P
Sbjct: 310 TLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L + R+D + +G++ I D
Sbjct: 85 SAGRRNLKLIMEYLPYGSLRDYLQAH--AERIDHIKLLQYTSQICKGMEYLGTKRYIHRD 142
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 143 LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE--SKFSVA 200
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 201 SDVWSFGVVLYELFT 215
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------- 433
S G L E++P GSL +L ++ R+D + L+ I
Sbjct: 83 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRN 140
Query: 434 --PSNVLLDYDMTAYVGDFGLARFLPTNVT-NPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 141 LATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTE--SKFSVA 198
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 199 SDVWSFGVVLYELFT 213
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARF--LPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
P N+L++ +GDFGLAR +P N + S +W + Y
Sbjct: 136 PQNLLINKRGQLKLGDFGLARAFGIPVNTFS-----SEVVTLWYRAPDVLMGSRTYSTSI 190
Query: 492 KGYSCGILLLEIMTGK 507
+SCG +L E++TGK
Sbjct: 191 DIWSCGCILAEMITGK 206
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN-----VTNPMKGQSNSAAVWGSIGY-NMEWVA-- 485
PSN+ D VGDFGL + + V PM + G+ Y + E +
Sbjct: 146 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGN 205
Query: 486 RYQHKGKGYSCGILLLEIM 504
Y HK +S G++L E++
Sbjct: 206 SYSHKVDIFSLGLILFELL 224
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 397 ALAFEFMPNGSLESWLHPNEATRR--------LDLAEGLK-------IAVDIPS-NVLLD 440
L EFM +G L +L LD+ EG+ I D+ + N L+
Sbjct: 79 CLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 138
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILL 500
+ V DFG+ RF+ + G + W S + +RY K +S G+L+
Sbjct: 139 ENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASP--EVFSFSRYSSKSDVWSFGVLM 195
Query: 501 LEIMT-GKRPTD 511
E+ + GK P +
Sbjct: 196 WEVFSEGKIPYE 207
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 178 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 235
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 236 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 289
Query: 550 DEPCMKAKIRECLTSLGRI 568
EP + E + LG +
Sbjct: 290 GEPSQRPTFSELVEHLGNL 308
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 22/128 (17%)
Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLD-----LAEGLKIAVDIPSNVLL 439
S + G + + L EF+ + L E RR D L LK P+NV L
Sbjct: 95 ASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK-----PANVFL 149
Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVAR--YQHKGKGYS 495
D +GDFGLAR L + ++ A + Y M E + R Y K +S
Sbjct: 150 DGKQNVKLGDFGLARILNHD--------TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWS 201
Query: 496 CGILLLEI 503
G LL E+
Sbjct: 202 LGCLLYEL 209
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 27/132 (20%)
Query: 398 LAFEFMPNGSLESWLHPNEA-------TRRLDL----AEGLK-------IAVDIPS-NVL 438
L +++M NG+L+ L+ ++ +RL++ A GL I D+ S N+L
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINIL 171
Query: 439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEWV--ARYQHKGKGYS 495
LD + + DFG+++ + V G++GY + E+ R K YS
Sbjct: 172 LDENFVPKITDFGISK-----KGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYS 226
Query: 496 CGILLLEIMTGK 507
G++L E++ +
Sbjct: 227 FGVVLFEVLCAR 238
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 169 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 226
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 227 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 280
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 281 GEPSQRPTFSELVEHLG 297
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQH--K 490
P N+LLD + + DFGL++ + + + + G++ Y E V R H
Sbjct: 154 PENILLDEEGHIKLTDFGLSK-------ESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQS 206
Query: 491 GKGYSCGILLLEIMTGKRP 509
+S G+L+ E++TG P
Sbjct: 207 ADWWSFGVLMFEMLTGTLP 225
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 178 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 235
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 236 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 289
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 290 GEPSQRPTFSELVEHLG 306
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN----VTNPMKGQSNSAAVWGSIGYNMEWVARYQH 489
P N+LLD + DFGLA N + N M G A E + R +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP--------ELLKRREF 183
Query: 490 KGKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+ +SCGI+L ++ G+ P D+ C ++ E
Sbjct: 184 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 98/259 (37%), Gaps = 58/259 (22%)
Query: 37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDR 96
LT ++ +N L I P NL+ + IL NQ A P + NL L L
Sbjct: 65 LTQINFSNNQLTDITP-----LKNLTKLVDIL-MNNNQIADITP--LANLTNLTGLTLFN 116
Query: 97 NCLAGSIPFSIGKLQNLQKLNPLATSLYSF-------------QLNLAENNLTGNIPESL 143
N + I L+NL LN L S + QL+ + N +T P L
Sbjct: 117 NQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 144 ENLTSLQILNLSCNHLGG--------------------SIPKPSGLFSTLSSIDFAHNNF 183
NLT+L+ L++S N + S P G+ + L + N
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 184 N--GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
G+L SL+N +LD + + +S+ P L +K L LG N I P G
Sbjct: 230 KDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG- 281
Query: 242 FKGTIDLNLSHNNLSGTIP 260
+L L+ N L P
Sbjct: 282 LTALTNLELNENQLEDISP 300
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 169 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 226
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 227 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 280
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 281 GEPSQRPTFSELVEHLG 297
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQH--K 490
P N+LLD + + DFGL++ + + + + G++ Y E V R H
Sbjct: 154 PENILLDEEGHIKLTDFGLSK-------ESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQS 206
Query: 491 GKGYSCGILLLEIMTGKRP 509
+S G+L+ E++TG P
Sbjct: 207 ADWWSFGVLMFEMLTGTLP 225
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 88 NLIQLGLDRNCLAGSIPFSIGKLQNLQKL-----------NPLATSLYSFQ-LNLAENNL 135
+L++L L RN L G P + ++Q+L N + L+ + LNL +N +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 136 TGNIPESLENLTSLQILNLSCN 157
+ +P S E+L SL LNL+ N
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASN 136
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQH--K 490
P N+LLD + + DFGL++ + + + + G++ Y E V R H
Sbjct: 155 PENILLDEEGHIKLTDFGLSK-------ESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQS 207
Query: 491 GKGYSCGILLLEIMTGKRP 509
+S G+L+ E++TG P
Sbjct: 208 ADWWSFGVLMFEMLTGTLP 226
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLD----------LAEGLK-------IAVD 432
S G L E++P GSL +L ++ R+D + +G++ I D
Sbjct: 82 SAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRD 139
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVT-NPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
+ + N+L++ + +GDFGL + LP + +K S W + E +++
Sbjct: 140 LATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTE--SKFSVA 197
Query: 491 GKGYSCGILLLEIMT 505
+S G++L E+ T
Sbjct: 198 SDVWSFGVVLYELFT 212
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
+ L+ + + + G S G + + L E++P+G L +L + A RLD + L
Sbjct: 60 QILKALHSDFIVKYRGVSYGPGRPELR-LVMEYLPSGCLRDFLQRHRA--RLDASRLLLY 116
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSA 471
+ I N+L++ + + DFGLA+ LP + + + +
Sbjct: 117 SSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVREPGQS 176
Query: 472 AVWG----SIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
++ S+ N+ + + +S G++L E+ T
Sbjct: 177 PIFWYAPESLSDNI-----FSRQSDVWSFGVVLYELFT 209
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN----VTNPMKGQSNSAAVWGSIGYNMEWVARYQH 489
P N+LLD + DFGLA N + N M G A E + R +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP--------ELLKRREF 184
Query: 490 KGKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+ +SCGI+L ++ G+ P D+ C ++ E
Sbjct: 185 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN----VTNPMKGQSNSAAVWGSIGYNMEWVARYQH 489
P N+LLD + DFGLA N + N M G A E + R +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP--------ELLKRREF 183
Query: 490 KGKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+ +SCGI+L ++ G+ P D+ C ++ E
Sbjct: 184 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN----VTNPMKGQSNSAAVWGSIGYNMEWVARYQH 489
P N+LLD + DFGLA N + N M G A E + R +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP--------ELLKRREF 183
Query: 490 KGKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+ +SCGI+L ++ G+ P D+ C ++ E
Sbjct: 184 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 31/122 (25%)
Query: 408 LESWLHPNEATRRLDLAEGLKIAVDI------------PSNVLLDYDMTAYVGDFGLARF 455
L+ +H E T +L + E L +A+D P N+LLD ++ DF +A
Sbjct: 106 LQQNVHFKEETVKLFICE-LVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAM 164
Query: 456 LPTNV-------TNP-MKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGK 507
LP T P M + S+ + ++W +S G+ E++ G+
Sbjct: 165 LPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDW----------WSLGVTAYELLRGR 214
Query: 508 RP 509
RP
Sbjct: 215 RP 216
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 423 LAEGLKIAVDIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM 481
LA I D+ + N+LL + DFGLAR + + KG + W +
Sbjct: 160 LASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 219
Query: 482 EWVARYQHKGKGYSCGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMEL 535
+ V Y + +S G+LL EI + G P DE F C L M P+
Sbjct: 220 DRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPE 275
Query: 536 VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRI 568
+Y +L EP + E + LG +
Sbjct: 276 MYQTMLDC----WHGEPSQRPTFSELVEHLGNL 304
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLD-----LAEGLKIAVDIPSNVLL 439
S + G + + L EF+ + L E RR D L LK P+NV L
Sbjct: 95 ASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK-----PANVFL 149
Query: 440 DYDMTAYVGDFGLARFL 456
D +GDFGLAR L
Sbjct: 150 DGKQNVKLGDFGLARIL 166
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 98/259 (37%), Gaps = 58/259 (22%)
Query: 37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDR 96
LT ++ +N L I P NL+ + IL NQ A P + NL L L
Sbjct: 65 LTQINFSNNQLTDITP-----LKNLTKLVDIL-MNNNQIADITP--LANLTNLTGLTLFN 116
Query: 97 NCLAGSIPFSIGKLQNLQKLNPLATSLYSF-------------QLNLAENNLTGNIPESL 143
N + I L+NL LN L S + QL+ + N +T P L
Sbjct: 117 NQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 144 ENLTSLQILNLSCNHLGG--------------------SIPKPSGLFSTLSSIDFAHNNF 183
NLT+L+ L++S N + S P G+ + L + N
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 184 N--GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
G+L SL+N +LD + + +S+ P L +K L LG N I P G
Sbjct: 230 KDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG- 281
Query: 242 FKGTIDLNLSHNNLSGTIP 260
+L L+ N L P
Sbjct: 282 LTALTNLELNENQLEDISP 300
>pdb|2XXK|A Chain A, Siap Complex
Length = 312
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 64 KLRILDAGGN----QFAGDIPAGIPKYFNLIQLGLDRNCLAGS----IPFSIGKLQNLQK 115
KLR+ DA N ++ G P P F+ + L L N + G K +QK
Sbjct: 145 KLRVPDAATNLAYAKYVGASP--TPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQK 202
Query: 116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH 158
+ + + QL L N +PE L+ + N + H
Sbjct: 203 FLAMTNHILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYH 245
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 28/127 (22%)
Query: 398 LAFEFMPNGSLESWLHPNEATR-----RLDLAEGLKIAVDI------------PSNVLLD 440
+ EF G+LE W+ + L+L E + VD PSN+ L
Sbjct: 111 IQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLV 170
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YSCG 497
+GDFGL +K G++ Y Q GK Y+ G
Sbjct: 171 DTKQVKIGDFGLV--------TSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALG 222
Query: 498 ILLLEIM 504
++L E++
Sbjct: 223 LILAELL 229
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 435 SNVLLDYDMTAYVGDFGLAR--FLPTNVTNPMKGQSNSAA----VWGSIGYNMEWVARYQ 488
NVLLD + + D+G+ + P + T+ G N A G++++W
Sbjct: 182 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDW----- 236
Query: 489 HKGKGYSCGILLLEIMTGKRPTD 511
++ G+L+ E+M G+ P D
Sbjct: 237 -----WALGVLMFEMMAGRSPFD 254
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN-----VTNPMKGQSNSAAVWGSIGY-NMEWVA-- 485
PSN+ D VGDFGL + + V PM + G+ Y + E +
Sbjct: 192 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHXGQVGTKLYMSPEQIHGN 251
Query: 486 RYQHKGKGYSCGILLLEIM 504
Y HK +S G++L E++
Sbjct: 252 NYSHKVDIFSLGLILFELL 270
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 178 NILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 235
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 236 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 289
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 290 GEPSQRPTFSELVEHLG 306
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 228 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 285
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 286 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 339
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 340 GEPSQRPTFSELVEHLG 356
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 230 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 287
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 288 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 341
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 342 GEPSQRPTFSELVEHLG 358
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
+ L+ + + + G S G + L E++P+G L +L + A RLD + L
Sbjct: 76 QILKALHSDFIVKYRGVSYGPGRQSLR-LVMEYLPSGCLRDFLQRHRA--RLDASRLLLY 132
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTN 459
+ I N+L++ + + DFGLA+ LP +
Sbjct: 133 SSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLD 180
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 187
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 221 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 278
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 279 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 332
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 333 GEPSQRPTFSELVEHLG 349
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 435 SNVLLDYDMTAYVGDFGLAR--FLPTNVTNPMKGQSNSAA----VWGSIGYNMEWVARYQ 488
NVLLD + + D+G+ + P + T+ G N A G++++W
Sbjct: 150 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILRGEDYGFSVDW----- 204
Query: 489 HKGKGYSCGILLLEIMTGKRPTD 511
++ G+L+ E+M G+ P D
Sbjct: 205 -----WALGVLMFEMMAGRSPFD 222
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
+ L+ + + + G S G + L E++P+G L +L + A RLD + L
Sbjct: 64 QILKALHSDFIVKYRGVSYGPGRQSLR-LVMEYLPSGCLRDFLQRHRA--RLDASRLLLY 120
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTN 459
+ I N+L++ + + DFGLA+ LP +
Sbjct: 121 SSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLD 168
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 435 SNVLLDYDMTAYVGDFGLAR--FLPTNVTNPMKGQSNSAA----VWGSIGYNMEWVARYQ 488
NVLLD + + D+G+ + P + T+ G N A G++++W
Sbjct: 135 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILRGEDYGFSVDW----- 189
Query: 489 HKGKGYSCGILLLEIMTGKRPTD 511
++ G+L+ E+M G+ P D
Sbjct: 190 -----WALGVLMFEMMAGRSPFD 207
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 28/127 (22%)
Query: 398 LAFEFMPNGSLESWLHPNEATR-----RLDLAEGLKIAVDI------------PSNVLLD 440
+ EF G+LE W+ + L+L E + VD PSN+ L
Sbjct: 97 IQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLV 156
Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YSCG 497
+GDFGL T++ N K + G++ Y Q GK Y+ G
Sbjct: 157 DTKQVKIGDFGLV----TSLKNDGKRXRSK----GTLRYMSPEQISSQDYGKEVDLYALG 208
Query: 498 ILLLEIM 504
++L E++
Sbjct: 209 LILAELL 215
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 215 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 272
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 273 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 326
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 327 GEPSQRPTFSELVEHLG 343
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 223 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 280
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 281 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 334
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 335 GEPSQRPTFSELVEHLG 351
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
+ L+ + + + G S G + L E++P+G L +L + A RLD + L
Sbjct: 63 QILKALHSDFIVKYRGVSYGPGRQSLR-LVMEYLPSGCLRDFLQRHRA--RLDASRLLLY 119
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTN 459
+ I N+L++ + + DFGLA+ LP +
Sbjct: 120 SSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLD 167
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 180 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 237
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 238 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 291
Query: 550 DEPCMKAKIRECLTSLGRI 568
EP + E + LG +
Sbjct: 292 GEPSQRPTFSELVEHLGNL 310
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 435 SNVLLDYDMTAYVGDFGLAR--FLPTNVTNPMKGQSNSAA----VWGSIGYNMEWVARYQ 488
NVLLD + + D+G+ + P + T+ G N A G++++W
Sbjct: 139 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILRGEDYGFSVDW----- 193
Query: 489 HKGKGYSCGILLLEIMTGKRPTD 511
++ G+L+ E+M G+ P D
Sbjct: 194 -----WALGVLMFEMMAGRSPFD 211
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 169 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 226
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 227 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 280
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 281 GEPSQRPTFSELVEHLG 297
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 187
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 187
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 187
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 178 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 235
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 236 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 289
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 290 GEPSQRPTFSELVEHLG 306
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+++L ++ + + G++ D+ NVL+D ++
Sbjct: 130 EYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLV 189
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN--MEWVA-------RYQHKGKGYS 495
V DFGL+R L + + A + + G + W A + +S
Sbjct: 190 CKVSDFGLSRVL----------EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWS 239
Query: 496 CGILLLEIMT-GKRP 509
G+++ E++ G+RP
Sbjct: 240 FGVVMWEVLAYGERP 254
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + DFGLAR + + KG + W + + V Y + +S
Sbjct: 169 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWS 226
Query: 496 CGILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
G+LL EI + G P DE F C L M P+ +Y +L
Sbjct: 227 FGVLLWEIFSLGASPYPGVKIDEEF--CRRLKEGTRMRAPDYTTPEMYQTMLDC----WH 280
Query: 550 DEPCMKAKIRECLTSLG 566
EP + E + LG
Sbjct: 281 GEPSQRPTFSELVEHLG 297
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 131 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 185
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 186 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 221
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTY---LSLFSNNLHGIIPPSLDSFTNLSTKLR 66
L LQ LNFGN + L P + LT L + SN + I L TNL +
Sbjct: 150 LTSLQQLNFGNQV------TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLES--- 198
Query: 67 ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
L A NQ + P GI NL +L L+ N L IG L +L L
Sbjct: 199 -LIATNNQISDITPLGI--LTNLDELSLNGNQLKD-----IGTLASLTNLT--------- 241
Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
L+LA N ++ P L LT L L L N + P +GL + L++++ N
Sbjct: 242 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL-AGL-TALTNLELNENQLEDI 297
Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN 229
P + +L N L + +SD P++ + +K + L N
Sbjct: 298 SP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNN 336
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 187
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 186
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 187 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 222
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN----VTNPMKGQSNSAAVWGSIGYNMEWVARYQH 489
P N+LLD + DFGLA N + N M G A E + R +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP--------ELLKRREF 184
Query: 490 KGKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+ +SCGI+L ++ G+ P D+ C ++ E
Sbjct: 185 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
P N+LLD + DFGLA N + + + G++ Y E + R + +
Sbjct: 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAE 187
Query: 493 G---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE 525
+SCGI+L ++ G+ P D+ C ++ E
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG- 493
NV+LD + + DFG+ + M + G+ Y + YQ GK
Sbjct: 149 DNVMLDSEGHIKIADFGMCK-------EHMMDGVTTREFCGTPDYIAPEIIAYQPYGKSV 201
Query: 494 --YSCGILLLEIMTGKRPTD 511
++ G+LL E++ G+ P D
Sbjct: 202 DWWAYGVLLYEMLAGQPPFD 221
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
N+LL + + DFGLAR + + +KG + W + V Y + +S
Sbjct: 198 NILLTHGRITKICDFGLARHIKNDSNYVVKGNARLPVKWMAPESIFNCV--YTFESDVWS 255
Query: 496 CGILLLEIMT-GKRPTDEMFADCLSLHNFCE---MALPESVMELVYSRLLQGVDKDAEDE 551
GI L E+ + G P M D E M PE +Y + D D
Sbjct: 256 YGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKR 315
Query: 552 PCMKAKIR 559
P K ++
Sbjct: 316 PTFKQIVQ 323
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
E+M NGSL+++L ++ + + G++ D+ NVL+D ++
Sbjct: 130 EYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLV 189
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
V DFGL+R L +P + + G I + W A + +S G
Sbjct: 190 CKVSDFGLSRVLE---DDPDAAXTTTG---GKI--PIRWTAPEAIAFRTFSSASDVWSFG 241
Query: 498 ILLLEIMT-GKRP 509
+++ E++ G+RP
Sbjct: 242 VVMWEVLAYGERP 254
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 33/261 (12%)
Query: 10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILD 69
L L +NF N+ + P L +KL + + +N + I P L + TNL T L + +
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL-TGLTLFN 121
Query: 70 AGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFS-IGKLQNLQ------KLNPLATS 122
NQ P + NL +L L N ++ S + LQ L L PLA
Sbjct: 122 ---NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 123 LYSFQLNLAENNLTG-NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
+L+++ N ++ ++ L NL SL ++ N+ I P G+ + L + N
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELSLNGN 231
Query: 182 NFN--GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF 239
G+L SL+N +LD + + +S+ P L +K L LG N I P
Sbjct: 232 QLKDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLA 284
Query: 240 GSFKGTIDLNLSHNNLSGTIP 260
G +L L+ N L P
Sbjct: 285 G-LTALTNLELNENQLEDISP 304
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
NVL+ + + DFGLAR + ++ ++G + W + E + Y K +S
Sbjct: 202 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGI--YTIKSDVWS 259
Query: 496 CGILLLEIMT 505
GILL EI +
Sbjct: 260 YGILLWEIFS 269
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
L+L++ L P + +L+SLQ+LN++ N L P G+F L+S+
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV---PDGIFDRLTSL 520
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 99 LAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH 158
LA F IG L+ L++LN + SF+L PE NLT+L+ L+LS N
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTNLEHLDLSSNK 160
Query: 159 L 159
+
Sbjct: 161 I 161
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 31/260 (11%)
Query: 10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILD 69
L L +NF N+ + P L +KL + + +N + I P L + TNL T L + +
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL-TGLTLFN 120
Query: 70 AGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFS-IGKLQNLQ------KLNPLATS 122
NQ P + NL +L L N ++ S + LQ L L PLA
Sbjct: 121 ---NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 175
Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNN 182
+L+++ N ++ L LT+L+ L + N + S P G+ + L + N
Sbjct: 176 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQ 231
Query: 183 FN--GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
G+L SL+N +LD + + +S+ P L +K L LG N I P G
Sbjct: 232 LKDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG 284
Query: 241 SFKGTIDLNLSHNNLSGTIP 260
+L L+ N L P
Sbjct: 285 -LTALTNLELNENQLEDISP 303
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 37/179 (20%)
Query: 401 EFMPNGSLESWLHPNEATR---------RLDLAEGLK-------IAVDI-PSNVLLDYDM 443
E+M NGSL +L + +AEG+ I D+ +N+L+ +
Sbjct: 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL 146
Query: 444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSC 496
+ + DFGLAR + +G + ++W A + K +S
Sbjct: 147 SCKIADFGLARLIEDAEXTAREGAK----------FPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
GILL EI+T G+ P M + +L M P++ E +Y + + ED P
Sbjct: 197 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 255
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 68 LDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCL 99
LDAGG+ G PA K+FN +Q G+ R+ +
Sbjct: 126 LDAGGHLTHGAKPALSGKWFNALQYGVSRDTM 157
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 432 DIPS-NVLLDYDMTAYVGDFGLARFLPTNVT-------NPM---------KGQSNSAAVW 474
DI S N+ L D T +GDFG+AR L + V P K +N + +W
Sbjct: 150 DIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIW 209
Query: 475 GSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRP 509
++G + + +H + S L+L+I++G P
Sbjct: 210 -ALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP 243
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN----VTNPMKGQSNSAAVWGSIGYNMEWVARYQH 489
P N+LLD + DFGLA N + N M G A E + R +
Sbjct: 132 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP--------ELLKRREF 183
Query: 490 KGKG---YSCGILLLEIMTGKRPTDE 512
+ +SCGI+L ++ G+ P D+
Sbjct: 184 HAEPVDVWSCGIVLTAMLAGELPWDQ 209
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 40/189 (21%)
Query: 7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTS--KLTYLSLFSNNLHGIIP----PSLDSFTN 60
G L L++++F ++ + L P L++ SL +N+L+ + ++ F N
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203
Query: 61 LSTKLRILDAGGNQFAGDIPAGIP------KYFNLIQ--------LGL------DRNCLA 100
+ L ILD GN + DI + F+LI G D+N A
Sbjct: 204 MV--LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 101 GSIPFSIGKLQNLQKLNPLATSLYS--FQ-------LNLAENNLTGNIPESLENLTSLQI 151
G + +++L + SL S F+ LNLA N + E+ L +LQ+
Sbjct: 262 G---LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 152 LNLSCNHLG 160
LNLS N LG
Sbjct: 319 LNLSYNLLG 327
>pdb|3MNL|A Chain A, The Crystal Structure Of Kstr (Rv3574) From Mycobacterium
Tuberculosis H37rv
pdb|3MNL|B Chain B, The Crystal Structure Of Kstr (Rv3574) From Mycobacterium
Tuberculosis H37rv
Length = 203
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 81 AGIPKYFNLIQLGLDRNCLAGSIPFS-----IGKLQNLQKLNPLAT 121
+ + + F+ I DR+ +AG+ PF +GKL + NPL T
Sbjct: 70 SALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRAMQRNPLLT 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSE 204
+L++LQI N+S N + L+ + + + N LP E+ +LSN + LD S
Sbjct: 230 DLSNLQIFNISANIFK---------YDFLTRL-YLNGNSLTELPAEIKNLSNLRVLDLSH 279
Query: 205 HMLSDEIPITLGNRSKFEHLLLGGNM 230
+ L+ +P LG+ + ++ NM
Sbjct: 280 NRLT-SLPAELGSCFQLKYFYFFDNM 304
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFL 456
P NVLLD M A + DFGL+ +
Sbjct: 144 PENVLLDAHMNAKIADFGLSNMM 166
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 434 PSNVLLDYDMTAYVGDFGLAR-------FLPTNVTNPMKGQSNSAAVWGSIGY----NME 482
P N+ +D +GDFGLA+ L + N N + G+ Y ++
Sbjct: 144 PXNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAXYVATEVLD 203
Query: 483 WVARYQHKGKGYSCGILLLEIM 504
Y K YS GI+ E +
Sbjct: 204 GTGHYNEKIDXYSLGIIFFEXI 225
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFL----PTNVTNPMK 465
P+N LL+ D + V DFGLAR + TN+ N ++
Sbjct: 157 PANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLE 192
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 128 LNLAENNLTGN-IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
L +A N+ N +P+ L +L L+LS L P S+L ++ +HNNF
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Query: 187 LPLEVGSLSNTQELDFS 203
L++ Q LD+S
Sbjct: 534 DTFPYKCLNSLQVLDYS 550
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 99 LAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH 158
LA F IG L+ L++LN + SF+L PE NLT+L+ L+LS N
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTNLEHLDLSSNK 184
Query: 159 L 159
+
Sbjct: 185 I 185
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTN 459
PSN+++ D T + DFGLAR TN
Sbjct: 152 PSNIVVKSDCTLKILDFGLARTASTN 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 105 FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
F IG L+ L++LN + SF+L PE NLT+L+ L+LS N +
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 105 FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
F IG L+ L++LN + SF+L PE NLT+L+ L+LS N +
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 105 FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
F IG L+ L++LN + SF+L PE NLT+L+ L+LS N +
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 105 FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
F IG L+ L++LN + SF+L PE NLT+L+ L+LS N +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTNLEHLDLSSNKI 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,301,418
Number of Sequences: 62578
Number of extensions: 709726
Number of successful extensions: 2466
Number of sequences better than 100.0: 297
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 2087
Number of HSP's gapped (non-prelim): 408
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)