Query 046037
Match_columns 388
No_of_seqs 359 out of 2532
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0237 Glycinamide ribonucleo 100.0 1.6E-84 3.4E-89 642.4 24.1 369 12-384 384-772 (788)
2 COG0150 PurM Phosphoribosylami 100.0 4.9E-79 1.1E-83 578.1 24.6 321 64-384 2-337 (345)
3 PLN02557 phosphoribosylformylg 100.0 2.6E-73 5.6E-78 560.2 34.6 324 62-387 55-378 (379)
4 TIGR00878 purM phosphoribosyla 100.0 1.3E-60 2.9E-65 468.6 33.0 317 66-382 1-332 (332)
5 PRK05385 phosphoribosylaminoim 100.0 4.5E-59 9.7E-64 457.3 31.3 313 66-379 1-327 (327)
6 cd02196 PurM PurM (Aminoimidaz 100.0 7.8E-53 1.7E-57 408.0 29.0 289 91-380 2-297 (297)
7 COG0611 ThiL Thiamine monophos 100.0 8.1E-49 1.8E-53 375.9 27.9 283 78-384 5-296 (317)
8 TIGR01379 thiL thiamine-monoph 100.0 4E-46 8.6E-51 364.3 27.9 285 79-385 3-297 (317)
9 TIGR02124 hypE hydrogenase exp 100.0 4E-46 8.7E-51 364.6 27.9 283 80-387 3-298 (320)
10 cd02194 ThiL ThiL (Thiamine-mo 100.0 3.5E-46 7.5E-51 360.5 26.7 280 78-380 2-291 (291)
11 cd02197 HypE HypE (Hydrogenase 100.0 3.1E-45 6.7E-50 354.2 26.8 265 90-379 23-293 (293)
12 PRK05731 thiamine monophosphat 100.0 7.3E-45 1.6E-49 355.5 26.9 286 78-384 5-300 (318)
13 PRK00943 selenophosphate synth 100.0 1.9E-44 4.2E-49 356.1 26.8 268 90-384 46-339 (347)
14 TIGR00476 selD selenium donor 100.0 2.9E-44 6.2E-49 355.1 27.1 273 90-379 47-346 (347)
15 PRK14105 selenophosphate synth 100.0 1.3E-43 2.7E-48 350.3 26.5 277 91-387 45-335 (345)
16 cd02691 PurM-like2 AIR synthas 100.0 9.2E-43 2E-47 343.0 31.2 268 91-387 34-311 (346)
17 cd06061 PurM-like1 AIR synthas 100.0 8.5E-44 1.8E-48 344.8 23.5 278 78-379 7-298 (298)
18 cd02195 SelD Selenophosphate s 100.0 1.2E-41 2.7E-46 328.1 25.2 243 90-379 38-287 (287)
19 COG0309 HypE Hydrogenase matur 100.0 6.6E-42 1.4E-46 326.0 17.1 278 90-387 35-317 (339)
20 TIGR03267 methan_mark_2 putati 100.0 7.1E-41 1.5E-45 327.7 23.5 258 91-387 42-303 (323)
21 cd02192 PurM-like3 AIR synthas 100.0 2.7E-40 5.9E-45 317.9 19.7 250 90-378 32-283 (283)
22 cd00396 PurM-like AIR (aminoim 100.0 1E-37 2.2E-42 290.0 21.1 219 105-378 1-222 (222)
23 cd02203 PurL_repeat1 PurL subu 100.0 5.7E-36 1.2E-40 292.1 20.7 257 105-387 27-303 (313)
24 PRK14090 phosphoribosylformylg 100.0 3.1E-35 6.7E-40 304.4 25.2 276 80-387 34-320 (601)
25 TIGR01736 FGAM_synth_II phosph 100.0 4.7E-36 1E-40 322.3 18.6 293 65-386 32-337 (715)
26 cd02204 PurL_repeat2 PurL subu 100.0 2.3E-35 4.9E-40 281.0 19.0 251 95-379 1-264 (264)
27 COG2144 Selenophosphate synthe 100.0 3.4E-35 7.4E-40 272.2 13.7 254 91-387 41-299 (324)
28 PRK01213 phosphoribosylformylg 100.0 2.7E-34 5.8E-39 308.6 20.4 290 65-387 44-349 (724)
29 TIGR01736 FGAM_synth_II phosph 100.0 1.8E-33 3.8E-38 302.4 26.4 264 91-387 415-689 (715)
30 PRK01213 phosphoribosylformylg 100.0 3.6E-33 7.7E-38 299.9 25.9 264 91-387 425-699 (724)
31 cd02193 PurL Formylglycinamide 100.0 7.9E-33 1.7E-37 264.9 19.7 249 105-378 2-271 (272)
32 COG0709 SelD Selenophosphate s 99.9 6.8E-26 1.5E-30 213.0 15.8 264 92-383 48-339 (346)
33 COG0046 PurL Phosphoribosylfor 99.9 2.2E-26 4.9E-31 239.4 12.1 290 65-386 56-363 (743)
34 COG0046 PurL Phosphoribosylfor 99.9 3.7E-24 8E-29 223.0 24.6 261 90-382 444-718 (743)
35 COG1973 HypE Hydrogenase matur 99.9 4.6E-24 1E-28 200.6 16.2 294 65-387 66-387 (449)
36 TIGR01735 FGAM_synt phosphorib 99.9 2E-23 4.2E-28 232.9 21.6 284 78-387 234-589 (1310)
37 PHA03366 FGAM-synthase; Provis 99.9 3.7E-22 8.1E-27 223.0 24.0 246 104-384 689-950 (1304)
38 TIGR01739 tegu_FGAM_synt herpe 99.9 3.5E-22 7.6E-27 222.4 23.7 243 105-381 594-848 (1202)
39 KOG3939 Selenophosphate synthe 99.9 6.1E-22 1.3E-26 179.5 18.0 273 95-384 2-295 (312)
40 PRK05297 phosphoribosylformylg 99.9 1.9E-22 4.2E-27 225.6 16.7 288 78-387 230-583 (1290)
41 TIGR01735 FGAM_synt phosphorib 99.9 3.4E-21 7.3E-26 215.2 24.1 257 93-380 692-973 (1310)
42 PLN03206 phosphoribosylformylg 99.9 6.4E-21 1.4E-25 211.6 24.2 261 92-387 683-967 (1307)
43 PRK05297 phosphoribosylformylg 99.9 1.5E-20 3.3E-25 210.5 22.6 263 93-387 672-962 (1290)
44 PF00586 AIRS: AIR synthase re 99.8 1.3E-21 2.8E-26 158.3 4.1 94 93-188 1-96 (96)
45 PF02769 AIRS_C: AIR synthase 99.8 4.9E-19 1.1E-23 154.6 13.1 146 222-387 1-150 (153)
46 PLN03206 phosphoribosylformylg 99.7 3.7E-18 8E-23 189.8 7.4 242 125-387 302-583 (1307)
47 TIGR01857 FGAM-synthase phosph 99.7 2.6E-16 5.7E-21 174.0 20.8 228 94-385 677-922 (1239)
48 PRK14090 phosphoribosylformylg 99.7 1.1E-15 2.3E-20 159.3 16.9 188 91-325 382-574 (601)
49 TIGR01857 FGAM-synthase phosph 99.7 1.3E-16 2.9E-21 176.3 9.6 237 124-387 327-585 (1239)
50 PF02843 GARS_C: Phosphoribosy 99.1 4.5E-11 9.7E-16 96.0 3.6 41 12-52 50-93 (93)
51 KOG1907 Phosphoribosylformylgl 98.9 5.3E-08 1.2E-12 102.5 17.9 230 125-379 725-975 (1320)
52 PLN02257 phosphoribosylamine-- 98.4 1.7E-07 3.6E-12 95.7 4.5 44 12-55 382-428 (434)
53 TIGR01739 tegu_FGAM_synt herpe 98.4 3.4E-06 7.4E-11 95.4 12.8 216 144-387 191-446 (1202)
54 PRK05784 phosphoribosylamine-- 98.2 5.5E-07 1.2E-11 93.1 3.1 44 12-55 402-449 (486)
55 PRK06395 phosphoribosylamine-- 97.7 1.9E-05 4.2E-10 80.7 3.5 43 12-55 380-425 (435)
56 KOG1907 Phosphoribosylformylgl 97.6 0.00029 6.2E-09 75.2 9.5 200 164-387 383-605 (1320)
57 PHA03366 FGAM-synthase; Provis 96.5 0.041 8.9E-07 63.4 14.3 202 164-387 311-535 (1304)
58 PF12818 Tegument_dsDNA: dsDNA 95.9 0.61 1.3E-05 45.0 16.7 221 144-385 30-282 (282)
59 PRK12858 tagatose 1,6-diphosph 65.9 5.3 0.00012 39.6 3.0 55 131-185 105-161 (340)
60 PF04694 Corona_3: Coronavirus 65.6 5.4 0.00012 28.1 2.1 18 16-33 38-55 (60)
61 PRK06111 acetyl-CoA carboxylas 36.7 26 0.00057 35.7 2.6 32 16-49 387-420 (450)
62 PF05697 Trigger_N: Bacterial 29.0 42 0.0009 28.6 2.2 43 1-45 1-46 (145)
63 PRK09250 fructose-bisphosphate 28.7 24 0.00052 35.1 0.7 53 131-185 145-197 (348)
64 PRK08227 autoinducer 2 aldolas 28.4 24 0.00052 33.7 0.7 71 104-185 75-145 (264)
65 COG3721 HugX Putative heme iro 28.2 1.2E+02 0.0025 26.6 4.7 40 328-369 31-70 (176)
66 PF15569 Imm21: Immunity prote 27.6 56 0.0012 26.0 2.5 24 169-192 17-40 (91)
67 PRK06852 aldolase; Validated 22.7 43 0.00094 32.7 1.3 53 133-185 116-172 (304)
No 1
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-84 Score=642.41 Aligned_cols=369 Identities=60% Similarity=0.988 Sum_probs=351.3
Q ss_pred cceEEE-EeeCCCHHHHHHHhhc--cCccCCCCccchhhhhhhhhhcCCCCCCCCCCcccccccccHHhHHHHHHHHHhc
Q 046037 12 SSRFFA-SKLNPTNNVLLNCAYE--CKLPFLSMASRRVSVNRCVLSMSGSGSSTSGGLTYKDSGVDIDAGSELVRRIAKM 88 (388)
Q Consensus 12 ~~~~~~-~~~g~~~~~a~~~ay~--~~i~~~g~~~R~Dig~~~~~~~~~~~~~~~~~~~y~~~gv~~~~~~~~v~~i~~~ 88 (388)
..||+. |+.++++.+|++.||+ +.|+|+|+|||||||+|+++.. ..+.+++||++||||||+||+||++||++
T Consensus 384 GGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ra~~~~----~~st~sLTYkdSGV~id~Gn~lVqrIk~l 459 (788)
T KOG0237|consen 384 GGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWRAFKNK----DDSTPSLTYKDSGVDIDAGNELVQRIKPL 459 (788)
T ss_pred CceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhhhhcchh----hcCCccccccccCccccchHHHHHHHHHh
Confidence 479987 8999999999999999 9999999999999999999765 45667899999999999999999999998
Q ss_pred C-----CC----CCCceEEEec-----CCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHH
Q 046037 89 A-----PG----IGGFGGLFPL-----GDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDY 154 (388)
Q Consensus 89 ~-----~~----~GdDaavi~~-----~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~ 154 (388)
+ || +|+|+++|++ +++.|+..||++++|+++++.++.|+++|+++||||+|||+++||+|++|+||
T Consensus 460 ~k~T~rpG~~~diGGFgglfdLk~ag~~d~~Lv~~tdGVGtKl~iA~~~~~hdtvG~DlvAm~vNDii~~gAePl~FLDY 539 (788)
T KOG0237|consen 460 VKGTRRPGADADIGGFGGLFDLKQAGFKDPLLVSGTDGVGTKLKIAQETNIHDTVGIDLVAMNVNDIIVQGAEPLFFLDY 539 (788)
T ss_pred hhcccCCCccccccccceeeehhhcCCCCceEEEeccCccceeehhhhhCcccccceeeeeeehhhHhhcCCcceeehhh
Confidence 7 43 9999999986 48999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCC-CCCCCCCEEEEeCCC
Q 046037 155 FATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDG-KNIVPGDVLIGLPSS 233 (388)
Q Consensus 155 l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~-~~a~~GD~Ii~~g~~ 233 (388)
+++++++....+++++||+++|++.+|+++||||++||++|++++||++||++|.+++..+++. +.+++||+|+++.|+
T Consensus 540 fa~gkLd~~va~~~v~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~~iLp~~~ei~~GDVllGL~Ss 619 (788)
T KOG0237|consen 540 FATGKLDVSVAEQVVKGIAEGCRQAGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERTDILPKLNEIVAGDVLLGLPSS 619 (788)
T ss_pred hhhcccchHHHHHHHHHHHHHHhhccceeeccccccCCCCCCCCccccccceEeeeeccCcCCCccccccCcEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999888877 559999999999999
Q ss_pred chHHHHHHHHHHHHhccCCccccCCCCch-hHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhcCCCc
Q 046037 234 GVHSNGFSLVRRVLAQSDLSLKDQLPSEN-TTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVFPKGL 312 (388)
Q Consensus 234 G~~~~G~sl~~~~~~~~~~~~~~~~~~~~-~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~~s~~ 312 (388)
|.|+|||||.||++.+.+..|.+++|++. .++++++|.|+++|++.++.+++++.+++++|||+|||..|++|++++++
T Consensus 620 GvHSNGfSLvrkil~~~~l~~~~~~P~~~~~tlGd~LL~pTkiYvk~ll~~i~~g~vkg~AHITGGGl~ENipRvlp~~l 699 (788)
T KOG0237|consen 620 GVHSNGFSLVRKILARSGLSYKDPLPWDSSKTLGDELLAPTKIYVKQLLPLIRKGGVKGLAHITGGGLTENIPRVLPDHL 699 (788)
T ss_pred ccccCcHHHHHHHHHhcCCccCCCCCCCcccchhhhhccccEEehhhhHHHHHhcccceeeeecCCCccccchhhccccc
Confidence 99999999999999988899999999874 49999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCc
Q 046037 313 GAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEG 384 (388)
Q Consensus 313 g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~g 384 (388)
++.||.+.|.+|+.|+|++..++++..||.|+||||.||+++|+||+++++++.+++ +..+|+||+|++..+
T Consensus 700 ~~~id~~twe~p~vF~Wl~~aG~v~~~em~RTfN~GiGmVlvVs~e~ve~v~kel~~~~e~~~~iG~vv~r~~ 772 (788)
T KOG0237|consen 700 GAVIDADTWELPPVFKWLQQAGNVPDSEMARTFNCGIGMVLVVSPENVERVLKELTNHGEEAYRIGEVVNREG 772 (788)
T ss_pred ceEEecccccCcHHHHHHHHcCCCCHHHHHHHhccccceEEEEcHHHHHHHHHHHhhCCeEEEEEEeEeecCC
Confidence 999999999999999999999999999999999999999999999999999999987 488999999987643
No 2
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-79 Score=578.05 Aligned_cols=321 Identities=60% Similarity=1.035 Sum_probs=305.5
Q ss_pred CCcccccccccHHhHHHHHHHHHhcC---------CCCCCceEEEecCC----ceEEEEeccCCCccccccccCChhHHH
Q 046037 64 GGLTYKDSGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLGD----SYLVAGTDGVGTKLKLAFETGIHDTIG 130 (388)
Q Consensus 64 ~~~~y~~~gv~~~~~~~~v~~i~~~~---------~~~GdDaavi~~~~----~~lv~stD~~~~k~~~~~~~~~~~~iG 130 (388)
..+||++|||||+++++++++||+.+ .++|+|+++|+++. +.|+.+||+++||+.+++.+++|+++|
T Consensus 2 ~~~tY~~aGVDi~~g~~~v~~ik~~vk~T~r~~v~gglGgf~~lf~l~~~~~~p~Lv~~tDGVGTKl~~A~~~~k~dTiG 81 (345)
T COG0150 2 TSLTYADAGVDIDAGNEAVERIKPAVKRTRRPEVMGGLGGFAGLFDLGQAYYKPVLVSGTDGVGTKLLLAEDAGKHDTIG 81 (345)
T ss_pred CcccHHhhCCCHhhHHHHHHHHHHHHHhhcCcccccCCcceeEEEEccCCCccceEEecCCCchHHHHHHHHhCCccccc
Confidence 36899999999999999999998765 38999999999986 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEE
Q 046037 131 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIV 210 (388)
Q Consensus 131 ~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v 210 (388)
+|+||||+||++|.||+|++|+||++.++++++.++++++||+++|++.||+++||||++||++|.+++||+++|++|++
T Consensus 82 ID~VAM~VNDlv~~GAePl~flDY~A~gk~~~~~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvv 161 (345)
T COG0150 82 IDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVV 161 (345)
T ss_pred cchheeecchhhhcCcchHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHhCCEEeccccccCCCcccCCceeeeeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhccCCccccCCCCc-hhHHHHHhhccchhhHHHHHHHHHhCCc
Q 046037 211 KKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISEGGV 289 (388)
Q Consensus 211 ~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~-~~~~~e~ll~p~~~~~~~~~~l~~~~~v 289 (388)
+++++++.+.+++||.|+.++|+|+|+|||||+||+++..+..+.+.+|+. .+++++.||+|+|+|++++++++++..|
T Consensus 162 ek~~ii~g~~i~~GDviigl~SSG~HSNGySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL~PTrIYvk~vL~l~~~~~v 241 (345)
T COG0150 162 EKDEIIDGSKVKEGDVIIGLASSGLHSNGYSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDV 241 (345)
T ss_pred EccccccccccCCCCEEEEecCCCcCCCchHHHHHHHHhcCccccccCccccccCHHHHhcCCceeehHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999987666666666653 4699999999999999999999998899
Q ss_pred cEEecCCCChhhhhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC
Q 046037 290 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG 369 (388)
Q Consensus 290 ~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~ 369 (388)
|+|+|||+|||..||.|+.+.+++++||..+||+|++|+|+++.++++.+|||++||||.||+++|++++++++++.+++
T Consensus 242 kg~AHITGGG~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 242 KGMAHITGGGFVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred ceEEEecCCChhhhChhhcCccceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -CCCeEEEEEEEcCCc
Q 046037 370 -TYEAYHIGEVVNGEG 384 (388)
Q Consensus 370 -~~~~~~IG~V~~~~g 384 (388)
++++|+||+|+++.+
T Consensus 322 ~g~~a~~iG~V~~~~~ 337 (345)
T COG0150 322 QGETAYVIGRVEAGEG 337 (345)
T ss_pred cCCceEEEEEEEeCCC
Confidence 699999999998643
No 3
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=100.00 E-value=2.6e-73 Score=560.20 Aligned_cols=324 Identities=87% Similarity=1.351 Sum_probs=300.5
Q ss_pred CCCCcccccccccHHhHHHHHHHHHhcCCCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHH
Q 046037 62 TSGGLTYKDSGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDI 141 (388)
Q Consensus 62 ~~~~~~y~~~gv~~~~~~~~v~~i~~~~~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDI 141 (388)
...++||++|||||+++++++++|++..|++|+|||+++++++.||++||++++|+++++.+++++++||++|++|+|||
T Consensus 55 ~~~~~~Y~~aGVdi~~~~~li~~i~~~~~giGdDaavi~~~~~~LV~ttD~vgtk~~~a~~~~~~~~iG~~aVa~nvnDI 134 (379)
T PLN02557 55 SEEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPFGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDI 134 (379)
T ss_pred ccccCcHHHhCcCHHHHHHHHHHHHHhCCCCCCCeEEEecCCCEEEEEeCCCCCCchhhhhcCcHhhHHHHHHHhHHHHH
Confidence 33479999999999999999999999999999999999999999999999999998888777888889999999999999
Q ss_pred hhhCChhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCC
Q 046037 142 VTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNI 221 (388)
Q Consensus 142 aa~GA~P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a 221 (388)
+||||+|++|++++.++++++++++++++||.++|+++||+++||||.++|++|.++.+++++|++|.++++++++++++
T Consensus 135 aamGA~P~~~l~~l~~~~l~~~~l~~i~~Gi~~a~~~~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~~~a 214 (379)
T PLN02557 135 VTSGAKPLFFLDYFATSHLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNI 214 (379)
T ss_pred HHcCCChHHhheecccCCCCHHHHHHHHHHHHHHHHHhCCEEEeecceEccCcccCCceeEEEEEEEEEecccccccccC
Confidence 99999999999999999999999999999999999999999999999999999988788999999999999999999999
Q ss_pred CCCCEEEEeCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhh
Q 046037 222 VPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFT 301 (388)
Q Consensus 222 ~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~ 301 (388)
+|||.|++++++|.|+||++|+|+.++..+..+.+.++....++++++++|+++|++.++++++++.+|+|+|||+|||.
T Consensus 215 kpGD~Iigl~ssGiHsng~sl~r~~l~~~~~~~~~~~~~~~~~l~e~ll~pt~iyv~~vl~l~~~~~V~am~diTgGGl~ 294 (379)
T PLN02557 215 VAGDVLIGLPSSGVHSNGFSLVRRVLAKSGLSLKDQLPGASVTIGEALMAPTVIYVKQVLDIISKGGVKGIAHITGGGFT 294 (379)
T ss_pred CCCCEEEEecccccccchhhhhHHHHHhccccccccccccCccHHHHhhcchHHHHHHHHHHhhcCCeEEEEcCCcchHh
Confidence 99999999999999999999999988655444444444334579999999999999999998877889999999999999
Q ss_pred hhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCCCCCeEEEEEEEc
Q 046037 302 DNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCGTYEAYHIGEVVN 381 (388)
Q Consensus 302 ~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~~~~~~~IG~V~~ 381 (388)
.+|+||++++++++|+.++||+|++|+|+|+.++++|+||+++||||.+|+++|++++++++++. .+.++++||+|++
T Consensus 295 ~~L~e~~~~g~g~~Id~~~~pv~~~f~~i~~~g~i~~~em~~tfN~GiGmv~~V~~~~a~~~l~~--~~~~a~~IG~V~~ 372 (379)
T PLN02557 295 DNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMGIGMVLVVSPEAADRILEE--GAYPAYRIGEVIN 372 (379)
T ss_pred hhhHHHhcCCeeEEEeCCCCCCCHHHHHHHHhCCCCHHHHHHhcCCcccEEEEECHHHHHHHHHh--cCCCeEEEEEEEc
Confidence 99999998999999999999999999999999999999999999999999999999999998877 2478999999999
Q ss_pred CCceEE
Q 046037 382 GEGVSY 387 (388)
Q Consensus 382 ~~gv~~ 387 (388)
+.+|.+
T Consensus 373 ~~~v~~ 378 (379)
T PLN02557 373 GEGVVY 378 (379)
T ss_pred CCceEe
Confidence 888865
No 4
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=100.00 E-value=1.3e-60 Score=468.63 Aligned_cols=317 Identities=56% Similarity=0.951 Sum_probs=282.0
Q ss_pred cccccccccHHhHHHHHHHHHhcC---------CCCCCceEEEecCC----ceEEEEeccCCCccccccccCChhHHHHH
Q 046037 66 LTYKDSGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLGD----SYLVAGTDGVGTKLKLAFETGIHDTIGID 132 (388)
Q Consensus 66 ~~y~~~gv~~~~~~~~v~~i~~~~---------~~~GdDaavi~~~~----~~lv~stD~~~~k~~~~~~~~~~~~iG~~ 132 (388)
+||+++|||++++++++++|++.+ +++||||||+++++ ..|++|||++++++|++..+++++++||+
T Consensus 1 ~~~~~~~~~~~~e~~li~~~~~~~~~~~~~~v~~g~GdDaav~~~~~~~~~~~l~~t~D~~g~~~~~~~~~~~~~~~G~~ 80 (332)
T TIGR00878 1 VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLGDKYKEPVLVSGTDGVGTKLLVAEAMNKHDTIGID 80 (332)
T ss_pred CCHHHhCcCHHHHHHHHHHHHHHHHhhCCCCcccCCCCCeEEEEcccccCCceEEEeccccccchHHHHHcCchHHHHHH
Confidence 589999999999999999997643 38999999999875 67999999999999998777788889999
Q ss_pred HHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcC
Q 046037 133 LVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKK 212 (388)
Q Consensus 133 aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~ 212 (388)
+|++|+|||+||||+|++++++|+++++++++++++++||.++|+++|++|+||||+..|++|+++.+.+++|++|.+++
T Consensus 81 av~~n~sDiaa~Ga~P~~~~~~l~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGG~t~~~~~~~~~~~~~i~~t~iG~~~~ 160 (332)
T TIGR00878 81 LVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEK 160 (332)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCEEEceeeeECCCcccCCceEEEEEEEEEEcC
Confidence 99999999999999999999999998889999999999999999999999999999999988887667888999999998
Q ss_pred CcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhccCCc-cccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccE
Q 046037 213 DSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLS-LKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKG 291 (388)
Q Consensus 213 ~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~~~-~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a 291 (388)
+++++++++++||.|+++|++|.|++|++++++.+...... +.....+....+.+.+++|++.+.+.++.+++.+.+++
T Consensus 161 ~~~~~~~~a~~GD~i~ltg~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~p~~~~~~~~~~l~~~~~i~a 240 (332)
T TIGR00878 161 DEIITGEKVKPGDVLIGLGSSGIHSNGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRIYVKPILELIKEVEVHG 240 (332)
T ss_pred ccccCccCCCCCCEEEEECCchHHHHHHHHHHHHhhhccccccccccccccchHHHHHhhHhHHHHHHHHHHHhcCCceE
Confidence 88999999999999999999999999999988765422110 11111111247889999999888777888887788999
Q ss_pred EecCCCChhhhhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-C
Q 046037 292 IAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-T 370 (388)
Q Consensus 292 ~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~ 370 (388)
|||||+|||+.+|+||+.+++|++|+.+++|+++.++++++.++++|+|+|++||+|.+|+++|++++++++++.+++ +
T Consensus 241 ~~DiS~gGL~~~L~e~~~sg~g~~I~~~~ipi~~~~~~~~e~~~~~~~e~~~~~~~g~glli~v~~e~~~~~~~~l~~~g 320 (332)
T TIGR00878 241 LAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGVGFVVIVPEEEVDKALALLNARG 320 (332)
T ss_pred EEeCCCccHhhhHHHhccCCceEEEecCCCCCCHHHHHHHHCCCCChHHHHHHHhccCCEEEEECHHHHHHHHHHHHhcC
Confidence 999999999999999987899999999999999999999999999999999999999889999999999999999987 6
Q ss_pred CCeEEEEEEEcC
Q 046037 371 YEAYHIGEVVNG 382 (388)
Q Consensus 371 ~~~~~IG~V~~~ 382 (388)
+++++||+|+++
T Consensus 321 i~a~vIG~V~~~ 332 (332)
T TIGR00878 321 EKAWVIGEVKKG 332 (332)
T ss_pred CCcEEEEEEeCC
Confidence 899999999864
No 5
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=100.00 E-value=4.5e-59 Score=457.27 Aligned_cols=313 Identities=59% Similarity=1.015 Sum_probs=274.9
Q ss_pred cccccccccHHhHHHHHHHHHhcC---------CCCCCceEEEecC----CceEEEEeccCCCccccccccCChhHHHHH
Q 046037 66 LTYKDSGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG----DSYLVAGTDGVGTKLKLAFETGIHDTIGID 132 (388)
Q Consensus 66 ~~y~~~gv~~~~~~~~v~~i~~~~---------~~~GdDaavi~~~----~~~lv~stD~~~~k~~~~~~~~~~~~iG~~ 132 (388)
+||+++|||+++.++++++|++.. +++||||||++.+ +..++++||++++++++.+.+++|+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~giGdDaav~~~~~~~~~~~lv~t~D~~~~~~~~~~~~~~~~~iG~~ 80 (327)
T PRK05385 1 LTYKDAGVDIEAGNELVERIKPAVKRTFRPEVLGGLGGFGGLFDLPKGYKEPVLVSGTDGVGTKLKLAIDLGKHDTIGID 80 (327)
T ss_pred CCHHHhCcCHHHHHHHHHHHHHHHHhcCCCccccCCcCccEEEecccccCCcceeeccccccchhHHHHHhCCHhhHHHH
Confidence 589999999999999999998764 3889999999974 467999999999997777767788999999
Q ss_pred HHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcC
Q 046037 133 LVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKK 212 (388)
Q Consensus 133 aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~ 212 (388)
+|++|+|||+||||+|++++++|+++++++++++++++||.++|+++|++|+||||..+|.++.++.+.+++|++|.+++
T Consensus 81 av~~n~sDIaamGa~P~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~~~~~~~i~~t~~G~~~~ 160 (327)
T PRK05385 81 LVAMCVNDLLVQGAEPLFFLDYIATGKLDPEVAAQVVKGIAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEK 160 (327)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCeEeCccceECCCcccCCCeeEEEEEEEEEec
Confidence 99999999999999999999999988889999999999999999999999999999988876633456788999999998
Q ss_pred CcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEE
Q 046037 213 DSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGI 292 (388)
Q Consensus 213 ~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~ 292 (388)
++++++++++|||.|++++.+|.+++|+.++++.+.+....+. ........+.+.+++|++.+.+....+.+.+.+++|
T Consensus 161 ~~~~~r~~a~~GD~I~~tg~~G~~g~g~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~p~~~~~~~~~~l~~~~~v~a~ 239 (327)
T PRK05385 161 DKIIDGSKVKEGDVLIGLASSGLHSNGYSLVRKILEVLDLDDT-LPELDGKTLGEELLEPTRIYVKPVLALLKEVDVKGM 239 (327)
T ss_pred ccccCcCCCCCCCEEEEeCCcchhhhHHHHHHHHHHhcccccc-ccccccchHHHHHhhhhHHHHHHHHHHHhcCCceEE
Confidence 8899999999999999999999999998888766543221111 011112358889999998777777777777789999
Q ss_pred ecCCCChhhhhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CC
Q 046037 293 AHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TY 371 (388)
Q Consensus 293 ~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~ 371 (388)
||||+|||+.+|+||++|++|++|+.+++|+++.++++++.++++|.+++.+|++|++|++++|+++.+++++.+++ +.
T Consensus 240 ~DiSdgGL~~~L~eia~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~G~~Ll~tv~~~~~~~l~~~l~~~g~ 319 (327)
T PRK05385 240 AHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMGIGMVLIVPPEDADAALALLEAAGE 319 (327)
T ss_pred EeCCCchHhhhhHHhcCCCceEEEecCCCCCCHHHHHHHHcCCCCHHHHHHHHhcCCcEEEEECHHHHHHHHHHHHhcCC
Confidence 99999999999999988899999999999999999999999999999999999999889999999999999988876 68
Q ss_pred CeEEEEEE
Q 046037 372 EAYHIGEV 379 (388)
Q Consensus 372 ~~~~IG~V 379 (388)
++++||+|
T Consensus 320 ~~~~IG~v 327 (327)
T PRK05385 320 DAWVIGRV 327 (327)
T ss_pred CceEEEEC
Confidence 99999986
No 6
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=7.8e-53 Score=407.95 Aligned_cols=289 Identities=63% Similarity=1.059 Sum_probs=254.9
Q ss_pred CCCCceEEEecC-----CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHH
Q 046037 91 GIGGFGGLFPLG-----DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLA 165 (388)
Q Consensus 91 ~~GdDaavi~~~-----~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~ 165 (388)
.+|.||++++++ ++.++++||++++++++++.++.++++||++|++|+|||+||||+|++++++|++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~~~~~l~~~~~~~~~l 81 (297)
T cd02196 2 GIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDYIATGKLDPEVA 81 (297)
T ss_pred CCCceeEEEeccccCCCCcEEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeHHHHhhhhcCCCCHHHH
Confidence 479999999986 477899999999999999988999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHH
Q 046037 166 EKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRR 245 (388)
Q Consensus 166 ~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~ 245 (388)
+++++||.++|+++|++++||||+.+++++.++.+.+++|++|.+++++++++++++|||.|++++++|.+++|+.++++
T Consensus 82 ~~~~~Gi~~~~~~~gi~ivGGdt~~~~~~~~~~~~~isvt~iG~~~~~~~~~~~~a~~Gd~I~~tg~~G~~~~g~~~~~~ 161 (297)
T cd02196 82 AEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDGSKIKPGDVLIGLPSSGLHSNGYSLVRK 161 (297)
T ss_pred HHHHHHHHHHHHHcCCeEeeecceEccCcccCCceeEEEEEEEEEeccccccccCCCCCCEEEEccCcchhhhHHHHHHH
Confidence 99999999999999999999999998887754456789999999998889999999999999999999999999988877
Q ss_pred HHhccCCccccCCC-CchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhcCCCceEEEEcCCCCCh
Q 046037 246 VLAQSDLSLKDQLP-SENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVP 324 (388)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~ 324 (388)
.+......+. .++ ...+.+.+++++|.+.+.+.+..+++...+++|||||+|||+.+|+||+.+++|++|+.++||++
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~e~a~~~~g~~Id~~~iPv~ 240 (297)
T cd02196 162 ILFEEGLDYD-DPEPGLGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPEGLGAVIDLGSWEIP 240 (297)
T ss_pred HHhhcccccc-cccccccchHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCchhhccHhhccCCceEEEecCCCCCC
Confidence 6543211111 111 11246889999999877777777776678999999999999999999986699999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEE
Q 046037 325 AVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVV 380 (388)
Q Consensus 325 ~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~ 380 (388)
+.++++++.++++|.+++++|++|++|++++++++.+++++.+++ ++++++||+|+
T Consensus 241 ~~~~~~~e~~~~~p~~~~~~~~~g~gll~~v~~~~~~~~~~~l~~~gi~a~~IG~v~ 297 (297)
T cd02196 241 PIFKWIQKAGNVSEEEMYRTFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297 (297)
T ss_pred HHHHHHHHhCCCCHHHHHHHHhCCCCEEEEECHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 999999999999999999999999889999999999999999887 68999999985
No 7
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=100.00 E-value=8.1e-49 Score=375.85 Aligned_cols=283 Identities=23% Similarity=0.321 Sum_probs=244.0
Q ss_pred HHHHHHHHHhc------CCCCCCceEEEecCCc-eEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHH
Q 046037 78 GSELVRRIAKM------APGIGGFGGLFPLGDS-YLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 150 (388)
Q Consensus 78 ~~~~v~~i~~~------~~~~GdDaavi~~~~~-~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~ 150 (388)
++++|+++.+. ..++|||||+++.++. .+|+|||++.+++||.+.+. |+++||+++++|+|||+||||+|.+
T Consensus 5 Ef~lI~~~~~~~~~~~~~~~~GDDaA~v~~~~~~~lvvttD~lv~~~hF~~~~~-p~d~G~Ka~a~NlSDlAAMGa~P~~ 83 (317)
T COG0611 5 EFELIKRYFKRRQREDVVLGIGDDAALVDAPEGQRLVVTTDMLVEGTHFPPDMT-PEDLGWKALAVNLSDLAAMGARPKA 83 (317)
T ss_pred HHHHHHHHHhhcCcccccccCCCceEEEecCCCceEEEEecccccccccCCCCC-HHHHHHHHHHHHHHHHHHcCCCchh
Confidence 46777777665 2599999999999755 79999999999999999877 8999999999999999999999999
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEE
Q 046037 151 FLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIG 229 (388)
Q Consensus 151 ~ld~l~-~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~ 229 (388)
++..++ |++.++++++++++||.++|+.|++++|||||... ++++++|++|.+++.+.+.|++|||||.|++
T Consensus 84 ~~lsl~lP~~~d~~~~~~~~~Gi~e~~~~y~~~lIGGDt~~~-------~l~is~t~iG~~~~~~~l~R~gAkpGD~v~v 156 (317)
T COG0611 84 FLLSLGLPPDLDEEWLEALADGIFEAAKKYGVKLIGGDTNRG-------PLSISVTAIGVLPKGRALLRSGAKPGDLVAV 156 (317)
T ss_pred heeeeeCCCCCCHHHHHHHHHHHHHHHHHcCCeEeccccCCC-------ceEEEEEEEEecCCCchhhccCCCCCCEEEE
Confidence 998886 56999999999999999999999999999999964 4678999999999999999999999999999
Q ss_pred eCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-
Q 046037 230 LPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF- 308 (388)
Q Consensus 230 ~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~- 308 (388)
||.+|.+.+|+.++.+. .. ++....+.+.+++|++ .+...+.+.. .+++|+||||| |+.+|.+|+
T Consensus 157 tG~lG~saagl~ll~~~---~~-------~~~~~~l~~r~~~P~P-rv~~g~~l~~--~a~aa~DiSDG-L~~dL~~i~~ 222 (317)
T COG0611 157 TGTLGRSAAGLELLLNV---LG-------PEDEEELIERHLRPTP-RVELGLALAK--LASAAMDISDG-LAADLGHIAR 222 (317)
T ss_pred cCCCchhHHHHHHHhcc---cC-------cchhHHHHHHhcCCCC-ChhHHHHHHH--HHHHheecchh-HHHHHHHHHH
Confidence 99999999999887651 10 1123478999999997 4555555543 68899999999 999999999
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCCCCCeEEEEEEEcCCc
Q 046037 309 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCGTYEAYHIGEVVNGEG 384 (388)
Q Consensus 309 ~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~~~~~~~IG~V~~~~g 384 (388)
.|++|++|+.+.+|+++.........+ ++.+|....+++|+++|++|++..+++...++. ..+++||+|+++.|
T Consensus 223 aS~vg~~I~~~~lp~~~~~~~~~~~~~-~~~~~aL~gGEDyELvft~p~~~~~~~~~~~~~-~~~~~IG~v~~~~g 296 (317)
T COG0611 223 ASGVGIVIDEDLLPLSDAVLEALDELG-DPLEWALSGGEDYELVFTVPEENREALLDALRS-LGVTIIGRVTEGEG 296 (317)
T ss_pred HcCCeEEEEeccCCCcHHHHHHHhccC-CHHHHHhccCCceEEEEEeCchhHHHHHHHHHh-cCceEEEEEeecCC
Confidence 499999999999997777666666555 899999888888999999999999998888765 12899999996665
No 8
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=100.00 E-value=4e-46 Score=364.25 Aligned_cols=285 Identities=23% Similarity=0.337 Sum_probs=238.7
Q ss_pred HHHHHHHHhcC-------CCCCCceEEEecCC-ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHH
Q 046037 79 SELVRRIAKMA-------PGIGGFGGLFPLGD-SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 150 (388)
Q Consensus 79 ~~~v~~i~~~~-------~~~GdDaavi~~~~-~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~ 150 (388)
+++++++.... .++|||||++++++ ..+++++|++++++||...+ +|+++||++|++|+|||+||||+|++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~g~gdDaavi~~~~~~~lvis~D~~~~~~~~~~~~-~p~~~G~~av~~~~sDiaa~Ga~P~~ 81 (317)
T TIGR01379 3 FELIARLLRRLVQDPDVALGIGDDAALVSAPEGRDLVLTTDTLVEGVHFPPDT-TPEDLGWKAVAVNLSDLAAMGATPKW 81 (317)
T ss_pred HHHHHHHHhhccCCCCcccCCCCcEEEEecCCCCeEEEEeccccCCcCCCCCC-CHHHHHHHHHHHHHHHHHHcCCcccE
Confidence 56777775421 47899999999974 67999999999999998876 78899999999999999999999999
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEE
Q 046037 151 FLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIG 229 (388)
Q Consensus 151 ~ld~l~-~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~ 229 (388)
+++++. |.++++++++++++||.++|+++|++++||||+.++ ++.+++|++|.+++.+++.+.++++||.|++
T Consensus 82 ~~~~~~~P~~~~~~~l~~i~~Gi~~a~~~~g~~ivGG~t~~~~------~~~i~vt~iG~~~~~~~~~~~~a~~Gd~I~l 155 (317)
T TIGR01379 82 FLLSLGLPSDLDEAWLEAFYDGLFECAKQYGVPLVGGDTVSSP------ELVVTVTAIGEAPKGRALLRSGAKPGDLVFV 155 (317)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEECccCCCCC------CcEEEEEEEEEeCCCCceecCCCCCCCEEEE
Confidence 997775 566888999999999999999999999999999764 3578899999999888899999999999999
Q ss_pred eCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-
Q 046037 230 LPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF- 308 (388)
Q Consensus 230 ~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~- 308 (388)
+|++|.+++|+.++.+.. ...+.+......+.+++|... ++..+.+.+ .+++|||||+| |+.+|++|+
T Consensus 156 tg~~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~~~-~~~~~~l~~--~v~a~~DvS~G-L~~~l~ema~ 224 (317)
T TIGR01379 156 TGTLGDSAAGLALLLKGK-------KEPDEEDDEELLQRHLRPEPR-VEEGLALAG--YANAAIDVSDG-LASDLGHIAE 224 (317)
T ss_pred cCchhHHHHHHHHHhcCC-------ccCcchhHHHHHHHhcCCCCh-HHHHHHHhh--hcceeEEchHh-HHHHHHHHHH
Confidence 999999998876654311 011111123455778888754 344444443 69999999985 999999999
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCCCCCeEEEEEEEcCCce
Q 046037 309 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCGTYEAYHIGEVVNGEGV 385 (388)
Q Consensus 309 ~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~~~~~~~IG~V~~~~gv 385 (388)
.|++|++|+.+++|+++.+.++++ +++|.++...+++.++||+++++++.+++.+.++. ++++||+|++++++
T Consensus 225 ~sg~g~~i~~~~ipv~~~~~~~~~--~~~~~~~~~~~ge~~~ll~~v~~~~~~~~~~~~~~--~~~~IG~v~~~~~~ 297 (317)
T TIGR01379 225 ASGVGIVIDLDRLPLSSELAAWAE--GKDPLEWALSGGEDYELVFTVPPERREALLDAAKG--PLTRIGRVTEGEGV 297 (317)
T ss_pred HcCCcEEEehhcCCCCHHHHHHhc--CCCHHHHHhcCCcceeEEEEeCHHHHHHHHhhccC--CceEEEEEEcCCce
Confidence 589999999999999999999998 88999988778888889999999999999888765 89999999988774
No 9
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=100.00 E-value=4e-46 Score=364.63 Aligned_cols=283 Identities=23% Similarity=0.290 Sum_probs=224.7
Q ss_pred HHHHHHHhc-----CCCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHH
Q 046037 80 ELVRRIAKM-----APGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDY 154 (388)
Q Consensus 80 ~~v~~i~~~-----~~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~ 154 (388)
.+|+++.+. ..++||||||+++++..+++|||++.++.|+. +++++||++|++|+|||+||||+|++++++
T Consensus 3 ~~i~~~~~~~~~~~~~~~gdDaavi~~~~~~lv~ttD~~~~~p~~~----~~~~iG~~av~~n~sDiaamGa~P~~~~~~ 78 (320)
T TIGR02124 3 QLIQELFLKAFGNEILAAMEDAAVLELSGGRLAFSTDSFVVDPLFF----PGGDIGKLAVCGTVNDVAVSGAKPLYLSCG 78 (320)
T ss_pred HHHHHHHHHhcCCcccCCCCceEEEeeCCCeEEEEecCCccCCccc----CcccHHHHHHHHHHHHHHHcCCcchhhEEE
Confidence 466666442 24899999999998888999999998776553 235899999999999999999999999999
Q ss_pred hc-CCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCC
Q 046037 155 FA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSS 233 (388)
Q Consensus 155 l~-~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~ 233 (388)
|+ |.+.++++++++++||.++|++||++|+||||+.++.-. ..++.+++|++|++++.+++++++++|||.|+++|++
T Consensus 79 l~lp~~~~~~~l~~~~~Gi~~a~~~~gi~ivGGdt~~~~~~~-~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~I~ltg~~ 157 (320)
T TIGR02124 79 FILEEGFPIEDLERIVKSMAEAARKAGVKIVTGDTKVVEKGK-ADGIFINTTGIGVIPSGIPISAHNLQPGDKIIVSGTI 157 (320)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEeeeeEEccCCC-CCcEEEEEEEEEEEcCCccccccCCCCCCEEEEeCCc
Confidence 97 456789999999999999999999999999999765211 1245688999999998889999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhC-CccEEecCCCChhhhhhhhhc-CCC
Q 046037 234 GVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEG-GVKGIAHITGGGFTDNIPRVF-PKG 311 (388)
Q Consensus 234 G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~-~v~a~~DIS~GGL~~~L~~~~-~s~ 311 (388)
|.++.++.++++ +..+...+. ..++|. .+....+++.+ .+++|||||+|||+.+|+||+ .|+
T Consensus 158 G~~g~~l~~~~~-----~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~v~a~~DiSdgGL~~~L~ela~~s~ 221 (320)
T TIGR02124 158 GDHGAAILAVRE-----GLGFETNLE--------SDCAPL---NGLVETLLNAGPAVHAMRDATRGGLAAVLNEWAQASG 221 (320)
T ss_pred cHHHHHHHHhhc-----ccCCCccch--------hhhhhh---HHHHHHHHhccCCceEEECCCCccHHHHHHHHHHHcC
Confidence 998776543321 111111111 111221 11222333333 589999999999999999998 589
Q ss_pred ceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC---CCCeEEEEEEEcCCc--eE
Q 046037 312 LGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG---TYEAYHIGEVVNGEG--VS 386 (388)
Q Consensus 312 ~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~---~~~~~~IG~V~~~~g--v~ 386 (388)
+|++|+.+++|+++.++++++.++++|.++ ++.| +|||+++|++.+++++.+++ ++++++||+|+++++ |.
T Consensus 222 ~g~~I~~~~ipi~~~~~~~~~~~~~~~~~~---~~~G-~ll~~v~~~~~~~~~~~~~~~~~gi~~~~IG~v~~~~~~~v~ 297 (320)
T TIGR02124 222 VGIVIEEEKIPVKEEVKGACELLGLDPLYL---ANEG-KLVLAVPPEAAEKVLEILKSHPYGKDAAIIGEVVERKEGRVV 297 (320)
T ss_pred CeEEEecccCCCCHHHHHHHHHhCCCHHHH---hcCC-cEEEEECHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCEEE
Confidence 999999999999999999999888888544 6667 59999999999999998875 588999999998765 54
Q ss_pred E
Q 046037 387 Y 387 (388)
Q Consensus 387 ~ 387 (388)
+
T Consensus 298 ~ 298 (320)
T TIGR02124 298 L 298 (320)
T ss_pred E
Confidence 3
No 10
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=100.00 E-value=3.5e-46 Score=360.47 Aligned_cols=280 Identities=22% Similarity=0.282 Sum_probs=232.3
Q ss_pred HHHHHHHHHhcC-------CCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHH
Q 046037 78 GSELVRRIAKMA-------PGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 150 (388)
Q Consensus 78 ~~~~v~~i~~~~-------~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~ 150 (388)
++++|+++.+.. +++|||||+++.++..++++||+++++.||.+.+ +|+++||++|++|+|||+||||+|++
T Consensus 2 E~~li~~~~~~~~~~~~~~~~~gdDaavi~~~~~~lv~t~D~~~~~~~f~~~~-~p~~~G~~av~~~~sDi~a~Ga~P~~ 80 (291)
T cd02194 2 EFELIDRLFKRLGAGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDT-TPEDIGWKALAVNLSDLAAMGARPLG 80 (291)
T ss_pred HHHHHHHHHhhcCCCCccCCCCCCCEEEecCCCCeEEEEecccccccCCCCCC-CHHHHHHHHHHHHHHHHHHcCCccce
Confidence 467888876543 4889999999966788999999999999998877 78999999999999999999999999
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEE
Q 046037 151 FLDYFATSH-LEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIG 229 (388)
Q Consensus 151 ~ld~l~~~~-~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~ 229 (388)
+++++++++ .++++++++++||.++|+++|++++||||+.++ +..+++|++|.+++.+++.++++++||.|++
T Consensus 81 ~~~~l~~p~~~~~~~l~~i~~Gi~~a~~~~g~~liGGdt~~~~------~~~i~vt~iG~~~~~~~~~~~~a~~GD~I~l 154 (291)
T cd02194 81 FLLSLGLPPDTDEEWLEEFYRGLAEAADRYGVPLVGGDTTSGS------ELVISVTALGEVEKGKPLRRSGAKPGDLLYV 154 (291)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEcccCCCCC------CeEEEEEEEEecCCCCceecCCCCCCCEEEE
Confidence 999998654 578999999999999999999999999999764 4578899999998878899999999999999
Q ss_pred eCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-
Q 046037 230 LPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF- 308 (388)
Q Consensus 230 ~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~- 308 (388)
+|++|.+.+|+.++++... . .++......+.+++|.+ .++....+.+ ..+++|||||+| |+.+|+||+
T Consensus 155 tg~~G~~~~g~~~~~~~~~-----~---~~~~~~~~~~~~~~p~~-~~~~~~~l~~-~~v~a~~DiSdG-L~~~l~ela~ 223 (291)
T cd02194 155 TGTLGDAAAGLALLLGGLK-----L---PEELYEELIERHLRPEP-RLELGRALAE-GLATAMIDISDG-LLADLGHIAE 223 (291)
T ss_pred eCCccHHHHHHHHHhCCCC-----C---ChhhHHHHHHHhcCCCC-cHHHHHHHHh-CCCeEEEEchHh-HHHHHHHHHH
Confidence 9999999999876543110 0 01123456777888875 3455555443 579999999995 999999999
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEE
Q 046037 309 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVV 380 (388)
Q Consensus 309 ~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~ 380 (388)
.|++|++|+.+++|+++.+.+ +.++++|.++....++.++|||+++++++ .+.++. +.++++||+|+
T Consensus 224 ~s~~g~~i~~~~ipi~~~~~~--~~~~~~p~~~~~~gGedy~ll~~v~~~~~---~~~~~~~~~~~~~IG~v~ 291 (291)
T cd02194 224 ASGVGAVIDLDKLPLSPALRA--AELGEDALELALSGGEDYELLFTVPPENA---EAAAAKLGVPVTVIGRVT 291 (291)
T ss_pred HcCCeEEEecccCCCCHHHHh--hhcCCCHHHHHhcCCcceEEEEEechhHh---HHHHhhcCCCceEEEEEC
Confidence 489999999999999999888 67789998886555666789999999876 223333 58999999985
No 11
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=3.1e-45 Score=354.21 Aligned_cols=265 Identities=23% Similarity=0.288 Sum_probs=213.1
Q ss_pred CCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCC-CCCHHHHHHH
Q 046037 90 PGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATS-HLEVDLAEKV 168 (388)
Q Consensus 90 ~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~-~~~~e~~~ei 168 (388)
.++||||||++.++..+++|||++....||. +++++||++|++|+|||+||||+|++++++|+++ +.+.++++++
T Consensus 23 ~~~~DDaavi~~~~~~lv~ttD~~~~~~~~~----~~~~iG~~av~~~~sDiaamGa~P~~~~~~l~lp~~~~~~~l~~~ 98 (293)
T cd02197 23 LEVLEDAAALLVGGGRLAFTTDSFVVSPLFF----PGGDIGKLAVCGTVNDLAMMGAKPLYLSLGFILEEGFPLEDLERI 98 (293)
T ss_pred cccCCceEEEecCCceEEEEecCccccCccc----CchhHHHHHHHhhHHHHHHcCCcchhheEEEECCCCCCHHHHHHH
Confidence 5889999999998888999999998776643 2368999999999999999999999999999854 6788999999
Q ss_pred HHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHh
Q 046037 169 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 248 (388)
Q Consensus 169 ~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~ 248 (388)
++||.++|++||++|+||||+.++... ...+.+++|++|++++.+++.|++++|||.|+++|++|.++.++.+++.
T Consensus 99 ~~Gi~~~~~~~g~~ivGGdt~~~~~~~-~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~i~vtG~~G~~~~~l~~~~~--- 174 (293)
T cd02197 99 VKSMAEAAREAGVKIVTGDTKVVPKGK-ADGIFINTTGIGVIPRGVIISPSNIRPGDKIIVSGTIGDHGAAILAARE--- 174 (293)
T ss_pred HHHHHHHHHHcCCEEEeceeEeccCCc-cCceEEEEEEEEEEcCCccccccCCCCCCEEEEeCCccHHHHHHHhccc---
Confidence 999999999999999999999765311 1245688899999998888889999999999999999998765432221
Q ss_pred ccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHh-CCccEEecCCCChhhhhhhhhcC-CCceEEEEcCCCCChHH
Q 046037 249 QSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISE-GGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~-~~v~a~~DIS~GGL~~~L~~~~~-s~~g~~I~~~~ip~~~~ 326 (388)
+..+... .+..++|.. +....+++. ..+++|||||+|||+.+|+||+. |++|++|+.+++|+++.
T Consensus 175 --~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~v~a~~DiSdgGL~~~L~~~a~~sg~g~~I~~~~iP~~~~ 241 (293)
T cd02197 175 --GLGFETD--------IESDCAPLN---GLVEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEIEEEAIPVREE 241 (293)
T ss_pred --CCCcchh--------hhhhhhhhh---HHHHHHHhcCCCceEEEcCCcchHHHHHHHHHHHcCCeEEEeeccCCCCHH
Confidence 1111110 111122221 122333333 36899999999999999999994 89999999999999999
Q ss_pred HHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC---CCCeEEEEEE
Q 046037 327 FKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG---TYEAYHIGEV 379 (388)
Q Consensus 327 ~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~---~~~~~~IG~V 379 (388)
+.++++.++++|.++ .++| +|||++|+++.+++++.+++ ++++++||+|
T Consensus 242 ~~~~~~~~~~~~~~~---~~~G-~ll~tv~~~~~~~i~~~l~~~~~gi~~~vIG~v 293 (293)
T cd02197 242 VRGACEMLGLDPLYL---ANEG-KFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV 293 (293)
T ss_pred HHHHHHHhCcCHHHH---hcCC-cEEEEECHHHHHHHHHHHHhCCCCCCeEEEEeC
Confidence 999999988998665 4556 69999999999999888763 6789999986
No 12
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00 E-value=7.3e-45 Score=355.49 Aligned_cols=286 Identities=21% Similarity=0.296 Sum_probs=237.2
Q ss_pred HHHHHHHHHhcC-----CCCCCceEEEecC-CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHH
Q 046037 78 GSELVRRIAKMA-----PGIGGFGGLFPLG-DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFF 151 (388)
Q Consensus 78 ~~~~v~~i~~~~-----~~~GdDaavi~~~-~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ 151 (388)
++++++++.+.. +++||||||++++ +..++++||++..+.||.+.+.+|+++||++|++|+|||+||||+|+++
T Consensus 5 E~~~i~~~~~~~~~~~~~~~gdDaavi~~~~~~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~~~ 84 (318)
T PRK05731 5 EFDLIARLFARRPSSRELGIGDDAALLGPPPGQRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAAF 84 (318)
T ss_pred HHHHHHHHHhhCCCccCCCCCCcEEEeccCCCCeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcceE
Confidence 367787776543 4889999999986 6789999999999999988778899999999999999999999999999
Q ss_pred HHHhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEe
Q 046037 152 LDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGL 230 (388)
Q Consensus 152 ld~l~-~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~ 230 (388)
++++. |.+++.++++++++||.++|+++|++++||||..++ ...+++|++|.+++.+++.+.+++|||.|+++
T Consensus 85 ~~~l~~p~~~~~~~l~~i~~Gi~~~~~~~g~~ivGG~t~~~~------~~~i~vt~iG~~~~~~~~~~~~a~~Gd~i~lt 158 (318)
T PRK05731 85 LLALALPKDLDEAWLEALADGLFELADRYGAELIGGDTTRGP------DLSISVTAIGDVPGGRALRRSGAKPGDLVAVT 158 (318)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEECcccCCCC------CcEEEEEEEEEcCCCCcccccCCCCCCEEEEE
Confidence 98776 457889999999999999999999999999999764 24688999999998888999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhccCCccccCCCC-chhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-
Q 046037 231 PSSGVHSNGFSLVRRVLAQSDLSLKDQLPS-ENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF- 308 (388)
Q Consensus 231 g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~-~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~- 308 (388)
|++|.+.+|+.++++.. . ++. ....+.+.+++|.+. .+..+.+ + ..+++|||||+ ||+.+|++|+
T Consensus 159 g~~G~~~~g~~~~~~~~-----~----~~~~~~~~~~~~~~~p~~~-~~~~~~~-~-~~v~a~~DiS~-GL~~~l~ema~ 225 (318)
T PRK05731 159 GTLGDSAAGLALLLNGL-----R----VPDADAAALISRHLRPQPR-VGLGQAL-A-GLASAAIDISD-GLAADLGHIAE 225 (318)
T ss_pred CCccHHHHHHHHHhcCC-----C----CChhhHHHHHHHhcCCCCC-HHHHHHH-h-hhchhheechH-hHHHHHHHHHH
Confidence 99999999876654311 1 111 123566788888764 3344443 3 34899999998 6999999999
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCc
Q 046037 309 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEG 384 (388)
Q Consensus 309 ~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~g 384 (388)
.|++|++|+.+++|+++.+.++ .++.+|.++....++.++||+++|+++.+++++.+++ ++++++||+|++++.
T Consensus 226 ~s~~g~~i~~~~ipi~~~~~~~--~~~~~~~~~~~~~g~~~~ll~~v~~~~~~~~~~~l~~~g~~~~~IG~v~~~~~ 300 (318)
T PRK05731 226 ASGVGADIDLDALPISPALREA--AEGEDALRWALSGGEDYELLFTFPPENRGALLAAAGHLGVGVTIIGRVTEGEG 300 (318)
T ss_pred HCCCeEEEeHHhCCCCHHHHHH--hcCCCHHHHHhcCCCceeEEEEECHHHHHHHHHHHHhcCCCceEEEEEEcCce
Confidence 5899999999999999887765 6788887765444444679999999999999998876 589999999998763
No 13
>PRK00943 selenophosphate synthetase; Provisional
Probab=100.00 E-value=1.9e-44 Score=356.06 Aligned_cols=268 Identities=20% Similarity=0.226 Sum_probs=208.8
Q ss_pred CCCCCceEEEecCC-ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCC-C-CCHHHHH
Q 046037 90 PGIGGFGGLFPLGD-SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATS-H-LEVDLAE 166 (388)
Q Consensus 90 ~~~GdDaavi~~~~-~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~-~-~~~e~~~ 166 (388)
|+.|||||++++++ ..+++|+|++. +.+.+|+++||++|+.|+|||+||||+|+++++++..+ + .++++++
T Consensus 46 ~~~gdDaavi~~~~~~~lv~t~D~~~------p~~~~p~~~G~~Av~~~~sDiaAmGa~P~~~l~~l~lp~~~~~~~~l~ 119 (347)
T PRK00943 46 NETRDDAAVYDLNDGTGIISTTDFFM------PIVDDPFDFGRIAATNAISDIYAMGGKPIMAIAILGWPINKLPPEVAR 119 (347)
T ss_pred CCCCCceEEEEeCCCcEEEEEcccCC------CCCCCHHHHHHHHHHHHhhHhhccCccHHhHhheeecCcccCcHHHHH
Confidence 46689999999874 56999999863 33567889999999999999999999999999998744 3 6889999
Q ss_pred HHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHH
Q 046037 167 KVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 246 (388)
Q Consensus 167 ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~ 246 (388)
++++||.++|+++|++|+||||..+| ...+++|++|.+++++++++++++|||.|++++++|.+..++ .++
T Consensus 120 ~i~~Gi~~~~~~~gv~lvGGdT~~~~------~~~i~~t~~G~~~~~~~l~~~~ak~GD~Iivtg~iG~~~~~~--~~~- 190 (347)
T PRK00943 120 EVLEGGRAACRQAGIPLAGGHSIDAP------EPIFGLAVTGVVPPERVKRNATAQAGDKLFLTKPLGIGILTT--AEK- 190 (347)
T ss_pred HHHHHHHHHHHHcCCceecccccCCC------CceEEEEEEEEEcCCceeeCCCCCCCCEEEEeCCccHHHHHH--HHH-
Confidence 99999999999999999999998765 235778999999998999999999999999999999975443 221
Q ss_pred HhccCCccccCCCCc-hhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCCh
Q 046037 247 LAQSDLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVP 324 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~-~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~ 324 (388)
. + .+... .....+.+.+ +.+....+.....+|+|+|||+|||+++|+||+ .|++|++|+.++||++
T Consensus 191 -~--~-----~~~~~~~~~~~~~~~~----l~~~~~~l~~~~~v~a~~DiT~gGL~~~L~ela~~s~~g~~Id~d~iPi~ 258 (347)
T PRK00943 191 -K--S-----KLKPEHYGLAIEAMCQ----LNRPGADFAKLPGVHAMTDVTGFGLLGHLLEMCQGAGLTARVDYAAVPLL 258 (347)
T ss_pred -h--c-----CCCHHHHHHHHHHHHH----hhhHHHHHhccCCCeEEEecCCchHHHHHHHHHHhcCCeEEEecccCCCC
Confidence 1 1 01110 1111111111 111222233335789999999999999999999 5999999999999999
Q ss_pred HHHHHHHHhCC------------------CCHHHH--HhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCC
Q 046037 325 AVFKWIQQAGR------------------IEDSEM--RRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGE 383 (388)
Q Consensus 325 ~~~~~i~~~~~------------------~~~~e~--~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~ 383 (388)
+.++++++.+. ++|++. +...+.+.||+++|||++++++++.+++ ++++++||+|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGll~~v~~~~a~~v~~~l~~~g~~a~vIG~V~~~~ 338 (347)
T PRK00943 259 PGVEEYIAQGCVPGGTGRNFASYGHLIGELPDEQRALLCDPQTSGGLLVAVAPEAEAEVLAIAAEHGIELAAIGELVEAR 338 (347)
T ss_pred hhHHHHHHcCCCCchhhhHHHHhhccccccCHHHHhhccCcccCccEEEEeCHHHHHHHHHHHHhcCCCeEEEEEEEcCC
Confidence 99999988643 445331 1112455579999999999999999987 69999999999765
Q ss_pred c
Q 046037 384 G 384 (388)
Q Consensus 384 g 384 (388)
+
T Consensus 339 ~ 339 (347)
T PRK00943 339 G 339 (347)
T ss_pred C
Confidence 3
No 14
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=100.00 E-value=2.9e-44 Score=355.13 Aligned_cols=273 Identities=21% Similarity=0.230 Sum_probs=215.8
Q ss_pred CCCCCceEEEecC-CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHH-hc-CCCCCHHHHH
Q 046037 90 PGIGGFGGLFPLG-DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDY-FA-TSHLEVDLAE 166 (388)
Q Consensus 90 ~~~GdDaavi~~~-~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~-l~-~~~~~~e~~~ 166 (388)
|++||||||++.+ +..+++|||++. +.+.+|+++||+++++|+|||+||||+|+++++. +. +++.++++++
T Consensus 47 ~~~gDDaAvi~~~~~~~lv~ttD~~~------p~~~~p~~~G~~av~~~lsDiaamGa~P~~~l~~~~~~~~~~~~~~l~ 120 (347)
T TIGR00476 47 AVMGDDAVIYLRHNGLSLVQTTDYIT------PIVDDPYMMGRIAAANALSDIYAMGGTPIDAMLILLGVSNKLTIEVMR 120 (347)
T ss_pred CCCCCCeEEEEecCCeEEEEEeccCC------CCccCHHHHHHHHHHHHHHhhhhcCchHHHHHhhccCCCCCCCHHHHH
Confidence 3489999999986 557999999974 3356788999999999999999999999998854 44 4568899999
Q ss_pred HHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHH
Q 046037 167 KVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 246 (388)
Q Consensus 167 ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~ 246 (388)
++++||.++|+++|++|+||||..+|. ..+++|++|.+++++++++++++|||.|++|+++|.+.. .+.++.
T Consensus 121 ~i~~Gi~~~~~~~g~~lvGGdT~~~~~------~~i~~t~~G~~~~~~~i~~~~ak~GD~Iiltg~lG~~~~--~~~~~~ 192 (347)
T TIGR00476 121 EVIQGFKDACREAGTSLTGGHTILNPW------PVFGGAVTGVCPEEEVITPSGAQVGDVLILTKPLGTQVA--VAVHKW 192 (347)
T ss_pred HHHHHHHHHHHHcCCCeEeeeeecCCc------CEEEEEEEEEECccceecCCCCCCCCEEEEECCccHHHH--HHHHHH
Confidence 999999999999999999999998762 357889999999888999999999999999999998652 122232
Q ss_pred Hhcc-CCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCCh
Q 046037 247 LAQS-DLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVP 324 (388)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~ 324 (388)
+... ...+.. ++....+.+.+..+++++ +....++.+..+|+|+|||+|||+++|+||+ +|++|++|+.++||++
T Consensus 193 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~a~~DiT~gGL~~~L~~ia~~sg~g~~I~~~~iPi~ 269 (347)
T TIGR00476 193 LDIPKDLSITK--EEVELAINEAIENMARLN-RKAAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPVL 269 (347)
T ss_pred hhcccccccCc--HHHHHHHHHHHHHHhHHH-HHHHHHHhhCCceEEEeccCccHHHHHHHHHhcCCCeEEEEeCCCCCc
Confidence 2211 000110 000112334444444444 3333344445799999999999999999999 6999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHhhcCCCe---------------------eEEEEEecccHHHHHHhcCC-CCCeEEEEEE
Q 046037 325 AVFKWIQQAGRIEDSEMRRTFNMGI---------------------GMVLVVSKETSHTILEGGCG-TYEAYHIGEV 379 (388)
Q Consensus 325 ~~~~~i~~~~~~~~~e~~~~f~~G~---------------------gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V 379 (388)
+.++++++.++.+..+|+.+||+|. +++++++++.++++++.++. ++++++||+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~g~~l~~v~~~~~~~~~~~~~~~~~~~~~ig~v 346 (347)
T TIGR00476 270 AKMEELSKLCGNPFGLMHGTCPEGGGLLSCLPREKAALLCDPIKSGGYLFGVQAEIIGIVEKTATERIIDKPRIGEV 346 (347)
T ss_pred hhHHHHHHcCCCChHHHhhhhhccCCcccCCCHHHHHHhcCchhccCcccccCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 9999999999988889999999996 45678888888888887776 5889999987
No 15
>PRK14105 selenophosphate synthetase; Provisional
Probab=100.00 E-value=1.3e-43 Score=350.29 Aligned_cols=277 Identities=18% Similarity=0.205 Sum_probs=207.8
Q ss_pred CCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCCh-hHHHHHHhc-CCCCCHHHHHHH
Q 046037 91 GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAK-PLFFLDYFA-TSHLEVDLAEKV 168 (388)
Q Consensus 91 ~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~-P~~~ld~l~-~~~~~~e~~~ei 168 (388)
++|||||+++.++..+++|||++. +.+.+|+++||++++.|+|||+||||+ |.+++..+. |++++++++++|
T Consensus 45 g~gDDaAvi~~~~~~lv~t~D~f~------~~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~~~~l~lP~~~~~~~l~~i 118 (345)
T PRK14105 45 GLGDDAAVIIKNGLAIVKTVDVFT------PIVDDPYIQGKIAACNSTSDVYAMGLSEIIGVLVILGIPPELPIEVAKEM 118 (345)
T ss_pred CCCCceEEEeeCCeEEEEEecCCC------CCcCCHHHHHHHHHHHHHHHHHHcCCccHHHHHhhhcCCCCCCHHHHHHH
Confidence 789999999988888999999963 335678999999999999999999997 899997765 667899999999
Q ss_pred HHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHh
Q 046037 169 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 248 (388)
Q Consensus 169 ~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~ 248 (388)
++|+.++|+++|++|+||||..+|. ..++++++|..++++++.|++++|||.|++|+++|.|++ +.+.+. ..
T Consensus 119 ~~Gi~~~~~~~gv~lvGGdT~~~~~------~~l~~svtg~g~~~~~i~r~ga~~GD~I~vTg~lG~~~~-~~l~~l-~~ 190 (345)
T PRK14105 119 LQGFQDFCRENDTTIIGGHTILNPW------PLIGGAVTGVGKEEDILTKAGAKEGDVLILTKPLGTQSA-MALSRV-PE 190 (345)
T ss_pred HHHHHHHHHHhCCEEEeeeeccCCC------CEEEEEEEEEEcccceeeCCCCCCCCEEEEeCCChHHHH-HHHHhc-ch
Confidence 9999999999999999999998752 235566677777778999999999999999999999863 222221 10
Q ss_pred ccCCccccCCCCc-----hhHHHHHhhccchhh-HHHHHHHHH---hCCccEEecCCCChhhhhhhhhc-CCCceEEEEc
Q 046037 249 QSDLSLKDQLPSE-----NTTLGEALMAPTVIY-VKQVLDIIS---EGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYE 318 (388)
Q Consensus 249 ~~~~~~~~~~~~~-----~~~~~e~ll~p~~~~-~~~~~~l~~---~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~ 318 (388)
.....+ .+++. .....+.+.+|.+ | ......... +..+|+|+|||+|||+++|+||+ .|+++++|+
T Consensus 191 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~DiSdgGL~~~L~ela~aS~v~i~i~- 266 (345)
T PRK14105 191 EFEDLI--DITKEEKEYIINKAIELMTTSNR-YALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSNVEIEIS- 266 (345)
T ss_pred hhhhhc--cCCHHHHHHHHHHHHHHHHhhhH-HHHHHHHHhhhccccCCeeEEEcCCCchHHHHHHHHHhhCCCeEEEE-
Confidence 000000 11111 1122334444442 3 222222221 13589999999999999999999 489999996
Q ss_pred CCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEc-CCceEE
Q 046037 319 DSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVN-GEGVSY 387 (388)
Q Consensus 319 ~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~-~~gv~~ 387 (388)
+||+++.+.++++.++.....-+...++| +|||++|+++++++++.+++ ++++++||+|++ +.++.+
T Consensus 267 -~iPi~~~~~~~~~~~~~~l~~g~~~~ssG-gLl~tv~~e~~~~~~~~l~~~g~~~~~IG~V~~~g~~~~~ 335 (345)
T PRK14105 267 -TLPVIKGTPELSSLFGHALLDGYGAETAG-GLLISVKPEYKDKLIDKLEKNNVYAFEVGKVVKNGVGKAK 335 (345)
T ss_pred -ccCCchhHHHHHHHhcccccCCCCCcccC-eEEEEecHHHHHHHHHHHHhCCCCceEEEEEEeCCCceEE
Confidence 89999999999888764221112234555 69999999999999999887 699999999976 556543
No 16
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=9.2e-43 Score=342.97 Aligned_cols=268 Identities=16% Similarity=0.235 Sum_probs=211.0
Q ss_pred CCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHh-cCCCCCHHHHHHHH
Q 046037 91 GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYF-ATSHLEVDLAEKVI 169 (388)
Q Consensus 91 ~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l-~~~~~~~e~~~ei~ 169 (388)
..+|||++++.++..+++|||++ ||...+ .|+.+||++|++|+|||+||||+|++++..+ .+++++.+++++++
T Consensus 34 ~~dDdaa~~~~~~~~lv~ttDgv----h~~~~~-~p~~~G~~av~~nvSDIaAmGa~P~~~l~sl~lp~~~~~~~l~~i~ 108 (346)
T cd02691 34 AQDDDAGVDAADVEYIVVAIDGI----HSRLSD-FPFLAGFHATRAALRDVMVMGARPVALLSDIHLADDGDVGKLFDFT 108 (346)
T ss_pred cccCceEEEccCCCeEEEEeCCC----CCCccc-ChHHHHHHHHHHHHHHHHHcCCchHHhheeeecCCCCCHHHHHHHH
Confidence 67888999888888999999976 443333 5679999999999999999999999998544 57788999999999
Q ss_pred HHHHHHHHHcCCeEecccceeeCCccc-CCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHH-HHHHHHHHHH
Q 046037 170 KGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHS-NGFSLVRRVL 247 (388)
Q Consensus 170 ~Gi~~~c~~~g~~lvGGdt~~~p~~~~-~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~-~G~sl~~~~~ 247 (388)
+||.++|++||++|+||||..+|+.+. ..++.+++|++|.+++ ..+.|++++|||.|++|+++|.++ .|+.++..
T Consensus 109 ~Gi~~a~~~~gv~lvGGdT~~~~~~~~~~~~l~~svT~iG~~~~-~~~~r~gA~pGD~I~vtg~~Gg~~~~~l~ll~~-- 185 (346)
T cd02691 109 AGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKS-DPSRRKNAEPGDLILMTEGAGGGTITTTAIYHG-- 185 (346)
T ss_pred HHHHHHHHHcCCeEEeeeeEEecCCcccCCceEEEEEEEEEecc-ccccccCCCCCCEEEEECCccHHHHHHHHHHcc--
Confidence 999999999999999999998766433 2345677899999876 456779999999999999988543 33333211
Q ss_pred hccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHh---CCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCC-
Q 046037 248 AQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISE---GGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWK- 322 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~---~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip- 322 (388)
.. ++.+..+.|. +.+....+... ..+++|||||+|||+++|+||+ .|++|++|+.++||
T Consensus 186 --~~------------~~~~~~~~~~--~~~~~~~l~~~~~~~~v~am~DiSdGGL~~~L~ela~aSgvg~~Id~~~IP~ 249 (346)
T cd02691 186 --MP------------DVVEETLNVD--FIKACEALRDSGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRS 249 (346)
T ss_pred --ch------------hHHHhhccHH--HHHHHHHHHHhCCCCCeEEEEcCCCchHHHHHHHHHHHcCCEEEEEhhhCcc
Confidence 00 1222233332 33333333332 2489999999999999999999 59999999999997
Q ss_pred -ChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 323 -VPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 323 -~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
+++.+.++++.++++|..+ +.+ +||+++|+++++++++.+++ +.++++||+|++++++++
T Consensus 250 pl~~~v~~~~~~~~~~p~~~----~~~-~LL~tv~~~~~~~v~~~l~~~g~~~~vIG~V~~~~~~~l 311 (346)
T cd02691 250 LINPKVLKMLEELGIDPLGV----SLD-SLMIIAPEEDAVDIIRTLREAGVRADEVGRVEEGRGVPL 311 (346)
T ss_pred ccCHHHHHHHHHcCCChhHc----ccC-cEEEEEChHHHHHHHHHHHhcCCCeEEEEEEEeCCceEE
Confidence 8899999999999999543 223 69999999999999988876 689999999998877654
No 17
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=8.5e-44 Score=344.82 Aligned_cols=278 Identities=23% Similarity=0.301 Sum_probs=220.5
Q ss_pred HHHHHHHHHhcC----------CCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCCh
Q 046037 78 GSELVRRIAKMA----------PGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAK 147 (388)
Q Consensus 78 ~~~~v~~i~~~~----------~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~ 147 (388)
.+.+++.+.+.. +++|||||+++.++..++++||++.++ ++++||+++++|+|||+||||+
T Consensus 7 e~~l~~~~~~~~~~~~~~~~~g~~~gdDaav~~~~~~~lv~s~D~~~~~---------~~~iG~~av~~~~sDi~amGa~ 77 (298)
T cd06061 7 PEFLKRLILKNLGADRDEVLVGPGGGEDAAVVDFGGKVLVVSTDPITGA---------GKDAGWLAVHIAANDIATSGAR 77 (298)
T ss_pred HHHHHHHHHhhcCCCCcccccCCCccceeEEEeeCCcEEEEEcCceeeC---------CcceeeehhhhhHHHHHhcCCC
Confidence 355666665543 137999999999888899999998543 6799999999999999999999
Q ss_pred hHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCE
Q 046037 148 PLFFLDYFATS-HLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDV 226 (388)
Q Consensus 148 P~~~ld~l~~~-~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~ 226 (388)
|+++++++.++ +.++++++++++||.++|+++|++++||||..++.+. .+.+++|++|.+++.+++.+++++|||.
T Consensus 78 P~~~~~~l~~p~~~~~~~l~~~~~Gi~~~~~~~gi~ivGG~t~~~~~~~---~~~i~vt~~G~~~~~~~~~~~~a~~Gd~ 154 (298)
T cd06061 78 PRWLLVTLLLPPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTPGVT---RPIISVTAIGKGEKDKLVTPSGAKPGDD 154 (298)
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeeeeEEcCCCC---ccEEEEEEEEEEcccccccccCCCCCCE
Confidence 99999988754 5689999999999999999999999999999877532 2478999999999888888999999999
Q ss_pred EEEeCCCchHHHHHHHHHHHHhccCCccccCCCCc-hhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhh
Q 046037 227 LIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIP 305 (388)
Q Consensus 227 Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~-~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~ 305 (388)
|+++|++|.+++|+.+..+ .+. +...++.. .+...+.+.+|. ..+..+.+ .+..+++|||||+|||+.+|+
T Consensus 155 i~ltg~~G~~~~~l~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~a~~DiSdGGL~~~l~ 226 (298)
T cd06061 155 IVMTKGAGIEGTAILANDF-EEE----LKKRLSEEELREAAKLFYKIS--VVKEALIA-AEAGVTAMHDATEGGILGALW 226 (298)
T ss_pred EEEeCCchHHHHHHHHHhh-HHH----HhhhcCHHHHHHHHHhhhhhh--hHHHHHHh-hhcCeeEEEeCCccHHHHHHH
Confidence 9999999999887644321 111 11122211 112233333333 23333332 223689999999999999999
Q ss_pred hhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEE
Q 046037 306 RVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEV 379 (388)
Q Consensus 306 ~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V 379 (388)
||+ .|++|++|+.+++|+++.+.++++.++++|+++ .++| ++++++|+++.+++++.+++ ++++++||+|
T Consensus 227 ~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~---~~~G-~ll~~v~~~~~~~~~~~~~~~g~~~~~IG~v 298 (298)
T cd06061 227 EVAEASGVGLRIEKDKIPIRQETKEICEALGIDPLRL---ISSG-TLLITVPPEKGDELVDALEEAGIPASVIGKI 298 (298)
T ss_pred HHHHHcCCeEEEEecccCcCHHHHHHHHHcCCCHHHh---hcCC-cEEEEEChHHHHHHHHHHHHCCCCeEEEEeC
Confidence 998 489999999999999999999999989998655 4556 69999999999999998876 5899999986
No 18
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=1.2e-41 Score=328.07 Aligned_cols=243 Identities=23% Similarity=0.228 Sum_probs=194.6
Q ss_pred CCCCCceEEEecC-CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCC----CHHH
Q 046037 90 PGIGGFGGLFPLG-DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHL----EVDL 164 (388)
Q Consensus 90 ~~~GdDaavi~~~-~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~----~~e~ 164 (388)
+++|||||+++++ +..+++|||.+. +.+.+|+++||++|++|+|||+||||+|+++++++++++. ++++
T Consensus 38 ~~~gdDaavi~~~~~~~lv~stD~~~------~~~~~p~~~G~~av~~~~sDiaa~Ga~P~~~~~~l~lp~~~~~~~~~~ 111 (287)
T cd02195 38 LGTGDDAAVYRLPGGLALVQTTDFFP------PIVDDPYLFGRIAAANALSDIYAMGAKPLSALAIVTLPRKLPALQEEV 111 (287)
T ss_pred CCCCCcEEEEEeCCCcEEEEEecCCC------CCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHhcCCCccchhhHHH
Confidence 5899999999984 677999999653 3346788999999999999999999999999999986543 6789
Q ss_pred HHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHH
Q 046037 165 AEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVR 244 (388)
Q Consensus 165 ~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~ 244 (388)
++++++||.++|+++|++++||||+.+| .+.+++|++|++++++++.++++++||.|++++++|.+..+..+ +
T Consensus 112 l~~~~~Gi~~~~~~~g~~ivGGdt~~~~------~~~i~~t~~G~~~~~~~~~~~~a~~GD~I~ltg~lG~~~~~~~~-~ 184 (287)
T cd02195 112 LREILAGGKDKLREAGAVLVGGHTIEGP------EPKYGLSVTGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAE-M 184 (287)
T ss_pred HHHHHHHHHHHHHHcCCcEEeeeeccCC------CcEEEEEEEEEEcchheecCCCCCCCCEEEEcCCchHHHHHHHH-H
Confidence 9999999999999999999999999765 35788999999998889999999999999999999964322111 1
Q ss_pred HHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhcC-CCceEEEEcCCCCC
Q 046037 245 RVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKV 323 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~~-s~~g~~I~~~~ip~ 323 (388)
+ + ...... .....+.+.+|.+ ....++.+..+++|||||+|||+.+|+||+. |++|++|+++++|+
T Consensus 185 ~-----~-~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~gGL~~~L~~~a~~sg~g~~Id~~~ip~ 251 (287)
T cd02195 185 A-----G-LARGED---IDAALESMARLNR----AAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPL 251 (287)
T ss_pred h-----c-cCChHH---HHHHHHHHHhhhH----HHHHHHHhcCCeEeEecCCcHHHHHHHHHHhhcCCeEEEEeCCCce
Confidence 1 1 000010 1234445555542 2344555567999999999999999999984 89999999999987
Q ss_pred hHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEE
Q 046037 324 PAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEV 379 (388)
Q Consensus 324 ~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V 379 (388)
+ .+.| +|++++++++++++.+.+++ ++++++||+|
T Consensus 252 ~--------------------~~~G-gll~~v~~e~~~~~~~~~~~~g~~~~~IG~v 287 (287)
T cd02195 252 L--------------------QTSG-GLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287 (287)
T ss_pred E--------------------eccC-ceEEEEcHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 6 1133 59999999999999888876 5899999985
No 19
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-42 Score=326.04 Aligned_cols=278 Identities=23% Similarity=0.313 Sum_probs=220.6
Q ss_pred CCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHH-HhcCCCCCHHHHHHH
Q 046037 90 PGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLD-YFATSHLEVDLAEKV 168 (388)
Q Consensus 90 ~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld-~l~~~~~~~e~~~ei 168 (388)
|..|+|++.+++.+..+++|||++.-. +...+-.++||.||+.++|||+.|||+|.|+.. .+.++.++.|.++++
T Consensus 35 ~~~g~D~~~i~l~~~~la~tTD~~~i~----P~ff~~~diG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i 110 (339)
T COG0309 35 LANGEDAAIIDLGDGVLAFTTDPFVID----PLFFPGGDIGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERI 110 (339)
T ss_pred cccccceeeeecCCceEEEEeCCeEec----ccccCCCceEEEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHH
Confidence 578999999999988999999998532 222233479999999999999999999999995 556888999999999
Q ss_pred HHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHh
Q 046037 169 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 248 (388)
Q Consensus 169 ~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~ 248 (388)
++.|.++|+++|++||+|||..+|+.- .++.+..|++|.+.++..++.+++||||.|+++|+.|.|+++ ++.+.+
T Consensus 111 ~~si~e~a~~~Gv~IvtGdTkV~~~~~--~~~vi~tt~iG~~~~~~~v~~~~~~~GD~vI~tg~~g~hga~--ila~~~- 185 (339)
T COG0309 111 LKSIDEEAEEAGVSIVTGDTKVVPGGK--DPIVINTTGIGIIDKEILVSPSGARPGDAVIVTGTIGIHGAS--ILAHRF- 185 (339)
T ss_pred HHHHHHHHHHcCCeEEccCceeecCCC--CCcEEEeeeEEeecCCcccccCCCCCCCEEEEcCChhHHHHH--HHHHhc-
Confidence 999999999999999999999888632 234566689999999888999999999999999999999864 443322
Q ss_pred ccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHH
Q 046037 249 QSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVF 327 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~ 327 (388)
+..+...+..+...+.+.+.+ ....+...+.. .++||||.|.|||+.+|.||+ +|++|++|+.+++|+.+.+
T Consensus 186 --~~~l~~~l~sD~~~~~~~~~~-~l~~~~~~~~~----~vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~~eV 258 (339)
T COG0309 186 --GEELETELGSDCAPLAKLVKA-LLSVVGEALAA----AVTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEV 258 (339)
T ss_pred --chhhccchhhhHHHHHHHHHH-Hhhcchhhhhh----hhhhccCCchhHHHHHHHHHHHHcCCeEEEeeccccccHHH
Confidence 112332333222222222211 00011111111 178899999999999999999 5999999999999999999
Q ss_pred HHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-C-CCeEEEEEEEcCCc-eEE
Q 046037 328 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-T-YEAYHIGEVVNGEG-VSY 387 (388)
Q Consensus 328 ~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~-~~~~~IG~V~~~~g-v~~ 387 (388)
+.+|+.+++||++ +-|+|- ++++|++++++++++.+++ + .++.+||+|+++++ +.+
T Consensus 259 r~vce~lGiDPl~---~anEG~-lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~~~~~v~l 317 (339)
T COG0309 259 RGVCELLGLDPLE---LANEGK-LVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGL 317 (339)
T ss_pred HHHHHHhCCCHHH---hhcCce-EEEEECHHHHHHHHHHHHhcCCccceeEEEEeccCCcEEE
Confidence 9999999999954 579984 9999999999999999987 5 69999999998755 543
No 20
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=7.1e-41 Score=327.74 Aligned_cols=258 Identities=22% Similarity=0.289 Sum_probs=197.5
Q ss_pred CCCCceEEEecC-CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHH
Q 046037 91 GIGGFGGLFPLG-DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 169 (388)
Q Consensus 91 ~~GdDaavi~~~-~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~ 169 (388)
++||||||++++ +..++++||++... +.+.+|+++||++|++|+|||+||||+|++++++|..+ +++++++++
T Consensus 42 g~GdDaavi~~~~~~~lvistD~~~~~----~~~~~p~~~G~~av~~nlsDiaamGa~P~~~~~~L~~~--~~~~l~~~~ 115 (323)
T TIGR03267 42 DFGDDAAAIKIGGDDILLLAADGIWGK----LLDADPWWAGYCAVLVNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVL 115 (323)
T ss_pred ccCCceEEEEcCCCCEEEEEecCcCCc----ccccChhHhhHHhhhhhhhhHHhcCCEehhHhhhhcCC--CHHHHHHHH
Confidence 789999999987 45799999998532 22346789999999999999999999999999999875 688999999
Q ss_pred HHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchH-HHHHHHHHHHHh
Q 046037 170 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVH-SNGFSLVRRVLA 248 (388)
Q Consensus 170 ~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~-~~G~sl~~~~~~ 248 (388)
+||.++|++||++++||||.... ....+++|++|.+++.+++++++++|||.|+++++++.. ..++.+ .
T Consensus 116 ~Gi~~a~~~~gi~ivGGdT~~~~-----~~~~i~vt~iG~~~~~~~~~r~~a~~GD~I~vtg~l~g~~~~~~~~-----~ 185 (323)
T TIGR03267 116 EGMREGAWKFGVPVVGGHTHPDT-----PYNALDVAIVGIAKEDCIIRSDTAKPGDLIIFAIDLDGRPYPSFPL-----N 185 (323)
T ss_pred HHHHHHHHHcCCCEEccccCCCC-----CcceeeEEEEEEEcCcceeeCCCCCCCCEEEEEEcCCCcccccccc-----C
Confidence 99999999999999999997421 112477899999998889999999999999999886422 111110 0
Q ss_pred ccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHH
Q 046037 249 QSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVF 327 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~ 327 (388)
+...... . ...++| ..+.+..+..++.+++|||||+|||+.+|+||+ .|++|++|+.++||+++.+
T Consensus 186 -----~~~~~~~---~--~~~~~~---~~~~~~~~~~~~~v~a~~DiSdGGL~~~L~ema~~s~~G~~I~~~~iP~~~~~ 252 (323)
T TIGR03267 186 -----WDTTTMK---S--PDYLRA---QMDAVVEIAERKLVKAGKDISNPGLIGTLGMLLEASRVGAEVDLESIPKPEDV 252 (323)
T ss_pred -----ccchhcc---C--HHHHHH---HHHHHHHHHHhCCceEEEcCCCCcHHHHHHHHHhhcCCcEEEEcCcccCCCCC
Confidence 0000000 0 011111 123444555556799999999999999999998 5899999999999988754
Q ss_pred HHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 328 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 328 ~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
.+ .+++ .++.|.+||+++|+++++++++.+++ ++++++||+|++++++++
T Consensus 253 ~~---------~~~l-~~~~g~~ll~tv~~e~~~~~~~~~~~~g~~~~~IG~v~~~~~~~l 303 (323)
T TIGR03267 253 DM---------VTWL-KMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDGKLYV 303 (323)
T ss_pred CH---------HHHH-HhCCCCCEEEEECchhHHHHHHHHHHcCCcEEEEEEEecCceEEE
Confidence 32 2232 23455579999999999999988866 589999999998766543
No 21
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=2.7e-40 Score=317.89 Aligned_cols=250 Identities=22% Similarity=0.276 Sum_probs=192.7
Q ss_pred CCCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHH
Q 046037 90 PGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 169 (388)
Q Consensus 90 ~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~ 169 (388)
+++|||||+++.++..+++++|++.... ...+|+++||++|++|+|||+||||+|++++++|+++ +++++++++
T Consensus 32 ~g~GdDaavi~~~~~~lvit~D~~~~~~----~~~~p~~~G~~av~~~vsDiaa~Ga~P~~~~~~l~~p--~~e~l~~i~ 105 (283)
T cd02192 32 ADLGDDAAAIPDGDGYLLLAADGIWPSL----VEADPWWAGYCSVLVNVSDIAAMGGRPLAMVDALWSP--SAEAAAQVL 105 (283)
T ss_pred CCCCCCEEEEecCCcEEEEEeccccccc----ccCCHHHHHHHHHHHHHHHHHhcCCEeeeeeeeecCC--CHHHHHHHH
Confidence 5899999999888889999999976432 1345789999999999999999999999999999877 468999999
Q ss_pred HHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhc
Q 046037 170 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQ 249 (388)
Q Consensus 170 ~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~ 249 (388)
+||.++|+++|++|+||||...+ ....+++|++|.+++.+++ ++++++||.|+++++++....|...+
T Consensus 106 ~Gi~~a~~~~gi~ivGGdt~~~~-----~~~~i~vt~iG~~~~~~~~-r~~a~~GD~I~vtg~l~g~~~g~~~~------ 173 (283)
T cd02192 106 EGMRDAAEKFGVPIVGGHTHPDS-----PYNALSVAILGRARKDLLI-SFGAKPGDRLILAIDLDGRVHPSPPP------ 173 (283)
T ss_pred HHHHHHHHHcCCcEecccCCCCC-----CCCeEEEEEEEEEcCCccc-cCCCCCCCEEEEEeCCCCcccccccc------
Confidence 99999999999999999998532 1236889999999987777 99999999999998765432121110
Q ss_pred cCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHH
Q 046037 250 SDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFK 328 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~ 328 (388)
.+...... .. .+++ .+.+....+...+.+++|||||+|||+.+|+||+ .|++|++|+.+++|+++.+.
T Consensus 174 ---~~~~~~~~-~~----~~~~---~~~~~~~~l~~~~~v~a~~DiSdGGL~~~L~ela~~sg~G~~Id~~~ip~~~~~~ 242 (283)
T cd02192 174 ---NWDATTMK-SP----ALLR---RQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIPRPEGVD 242 (283)
T ss_pred ---CccccccC-CH----HHHH---HHHHHHHHHHHcCCCceeecCCCCcHHHHHHHHHHhcCCcEEEecccCCCCCCCC
Confidence 00000000 00 1111 1233444455556799999999999999999998 58999999999999886532
Q ss_pred HHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEE
Q 046037 329 WIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGE 378 (388)
Q Consensus 329 ~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~ 378 (388)
..+++.. .++++||+++++++++++++.+++ ++++++||+
T Consensus 243 ---------~~~~l~~-~~~~~ll~~v~~~~~~~v~~~l~~~gi~~~~IG~ 283 (283)
T cd02192 243 ---------LERWLKC-FPGFGFLLTARPENADEVVAVFAAVGITAAVIGE 283 (283)
T ss_pred ---------hHHHHHh-CCCCceEEEECHHhHHHHHHHHHHcCCcEEEeCC
Confidence 2233333 345689999999999999998876 689999995
No 22
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00 E-value=1e-37 Score=289.97 Aligned_cols=219 Identities=32% Similarity=0.508 Sum_probs=185.6
Q ss_pred eEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHcCCeE
Q 046037 105 YLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-LEVDLAEKVIKGIVDGCQQSDCVL 183 (388)
Q Consensus 105 ~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~-~~~e~~~ei~~Gi~~~c~~~g~~l 183 (388)
.|++++|++.+++|+ +|+++||++|++|+|||+||||+|+++++++..++ .++++++++++|+.++|+++|+++
T Consensus 1 ~l~~~~D~~~~~~~~-----~p~~~g~~av~~~~sDl~a~Ga~P~~~~~~l~~~~~~~~~~~~~~~~Gi~~~~~~~gi~i 75 (222)
T cd00396 1 SLAMSTDGINPPLAI-----NPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDVVDGVAEACNQLGVPI 75 (222)
T ss_pred CeEEEECCCCCCcCC-----CCccHHHHHHHHhHHHHHhcCCccHHHhhheccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 378999999998883 45699999999999999999999999999998654 478999999999999999999999
Q ss_pred ecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhccCCccccCCCCchh
Q 046037 184 LGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENT 263 (388)
Q Consensus 184 vGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~ 263 (388)
+||||+.++++. ..++++++|++|.+++.+.+.+.++++||.|+++| +..
T Consensus 76 vgG~t~~~~~~~-~~~~~i~~t~~G~~~~~~~~~~~~~~~Gd~lv~~g--------~~~--------------------- 125 (222)
T cd00396 76 VGGHTSVSPGTM-GHKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG--------VDA--------------------- 125 (222)
T ss_pred eceeeEEccCCc-CCCceEEEEEEEEecCCccccccCCCCCCEEEEeC--------hHH---------------------
Confidence 999999987652 22467899999999887777778999999999998 000
Q ss_pred HHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHH
Q 046037 264 TLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMR 342 (388)
Q Consensus 264 ~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~ 342 (388)
+.++.+++.+++|||||+|||+.+|+||+ .+++|++|+++++|+++.+.++++... +++
T Consensus 126 ----------------~~~l~~~~~v~a~~Dvs~GGl~~~l~ema~~s~~g~~i~~~~ip~~~~~~~~~~~~~----~~~ 185 (222)
T cd00396 126 ----------------VLELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHI----EEA 185 (222)
T ss_pred ----------------HHHHHHhCCeeEEEeCCCCcHHHHHHHHHHhcCCEEEEecccCcCcHHHHHHHHhcC----cch
Confidence 01122345799999999999999999998 489999999999999999999886543 334
Q ss_pred hhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEE
Q 046037 343 RTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGE 378 (388)
Q Consensus 343 ~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~ 378 (388)
.++++++++++++++++++++.+.++. ++++++||+
T Consensus 186 ~~~~~~~~ll~~v~~~~~~~~~~~~~~~g~~~~~IG~ 222 (222)
T cd00396 186 LLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222 (222)
T ss_pred hhhccCccEEEEECHHHHHHHHHHHHHcCCCEEEeCC
Confidence 568888889999999999999988876 689999995
No 23
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=5.7e-36 Score=292.14 Aligned_cols=257 Identities=22% Similarity=0.272 Sum_probs=192.6
Q ss_pred eEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCC------------HHHHHHHHHHH
Q 046037 105 YLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE------------VDLAEKVIKGI 172 (388)
Q Consensus 105 ~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~------------~e~~~ei~~Gi 172 (388)
.+++++|+.. +... .+|+++||++|+.|+|||+||||+|+++++++++++++ .++++++++|+
T Consensus 27 ~~~~~~e~~~----~~~~-~~p~~~g~~~v~~~vsDiaamGa~P~~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~~~~Gi 101 (313)
T cd02203 27 AVVFKVETHN----HPSA-IEPFGGAATGVGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGI 101 (313)
T ss_pred EEEEEeccCC----CCCC-cCCcccHhhhhhhhhhcccccCCEEEEEeeEEeecCCcccccccccccCHHHHHHHHHHHH
Confidence 4889999874 3333 35679999999999999999999999999999876542 36799999999
Q ss_pred HHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCC----CchHHHHHHHHHHHHh
Q 046037 173 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLA 248 (388)
Q Consensus 173 ~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~----~G~~~~G~sl~~~~~~ 248 (388)
.++|+++|++++||||+.++..+. ...++++++|.++++++++++++++||.|+++|. .|.++.++ +...+.
T Consensus 102 ~~~~~~~gv~lvGGdt~~~~~~~~--~p~~~~~~~G~~~~~~~~~~~~a~~GD~I~l~G~~~~~~gl~G~~~--~~~~~~ 177 (313)
T cd02203 102 SDYGNCIGIPTVGGEVRFDPSYYG--NPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATF--SSKELS 177 (313)
T ss_pred HHHHHHhCCceeeeEEEEECCcCC--CceEEEEEEEEEehhhcccCCCCCCCCEEEEecCCCCCCCccHHHH--HHHHhc
Confidence 999999999999999998875433 2346788999999888888899999999999985 66665433 332222
Q ss_pred ccCCc-cccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHH
Q 046037 249 QSDLS-LKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAV 326 (388)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~ 326 (388)
..... ....++.....+.. ...+.+..+++.+.+++|||||+|||+.+|+||+ .|++|++|+++++|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~ema~as~~G~~I~~~~iP~~~~ 250 (313)
T cd02203 178 ENSSELDRPAVQVGDPFMEK-------KLQEAILEARETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREP 250 (313)
T ss_pred CccccccCCCCCccCHHHHH-------HHHHHHHHHHhcCCEEEEEecCCchHHHHHHHHHhcCCceEEEEecCCcccCC
Confidence 10000 00111110001111 1223445555567899999999999999999998 589999999999998752
Q ss_pred HHHHHHhCCCCHHHHHhhcCCCe-eEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 327 FKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 327 ~~~i~~~~~~~~~e~~~~f~~G~-gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
.++|.+++ |+++. ++|+++++++.+++++.+++ ++++++||+|++++.+.+
T Consensus 251 --------~~~~~~~~--~se~~~~ll~tv~~~~~~~~~~~l~~~gi~~~~IG~vt~~~~~~l 303 (313)
T cd02203 251 --------GMSPWEIW--ISESQERMLLVVPPEDLEEFLAICKKEDLEAAVIGEVTDDGRLRL 303 (313)
T ss_pred --------CCCHHHHH--hcCccccEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCeEEE
Confidence 35777764 55543 59999999999999998876 589999999998776654
No 24
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=3.1e-35 Score=304.45 Aligned_cols=276 Identities=21% Similarity=0.306 Sum_probs=209.3
Q ss_pred HHHHHHHhcCC--CCCCceEEEecCC-ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhc
Q 046037 80 ELVRRIAKMAP--GIGGFGGLFPLGD-SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA 156 (388)
Q Consensus 80 ~~v~~i~~~~~--~~GdDaavi~~~~-~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~ 156 (388)
++.+.+.+.+| ++||||||+++++ ..+++++|+.. | +..-.|+++|+.+|+.++|||+||||+|++++++|.
T Consensus 34 ~~~k~~l~~~~~~g~gdDAaVi~~~~~~~l~~k~Eshn---~--ps~idPy~GAat~Vgg~irDIaamGA~Pialld~L~ 108 (601)
T PRK14090 34 SHTKKYIRRLPKTGFEGNAGVVNLDDYYSIAFKIESHN---H--PSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDSLH 108 (601)
T ss_pred HHHHHHHhhCCCCCCCCCeEEEEeCCCCEEEEEECccC---C--cccCCHHHHHHHHHHHHHhhHhhcCCChheeEEcCC
Confidence 34444444444 8999999999875 46899998854 2 222357899999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCC----
Q 046037 157 TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPS---- 232 (388)
Q Consensus 157 ~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~---- 232 (388)
++ ++++++++||.++|+++|+|++||||+..+.+ ... ..++++++|.+++++++++..+++||.|+++|.
T Consensus 109 ~~----~~l~~vv~GI~~~~n~~GVP~VGGdt~~~~~y-~~~-plv~vt~vG~v~~~~iv~~~~a~~GD~Ivl~G~~tGr 182 (601)
T PRK14090 109 MS----RIIDGIIEGIADYGNSIGVPTVGGELRISSLY-AHN-PLVNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGR 182 (601)
T ss_pred hH----HHHHHHHHHHHHHHHHhCCCEeeEEEEEeCCc-cCC-CceEEEEEEEEcCccccccCCCCCCCEEEEEcCCCCC
Confidence 75 58999999999999999999999999987643 222 357889999999888888999999999999985
Q ss_pred CchHHHHHHHHHHHHhccC-CccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CC
Q 046037 233 SGVHSNGFSLVRRVLAQSD-LSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PK 310 (388)
Q Consensus 233 ~G~~~~G~sl~~~~~~~~~-~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s 310 (388)
.|.|+. +++.+.+.... .... .+. .....+. ...+..++..+.+.+++|||+|.|||+.+|+||+ .+
T Consensus 183 dGi~Ga--s~as~~l~~~~~~~~~--vq~-gd~~~ek------~l~e~~l~~~~~glI~a~~DigaGGLa~AL~EmA~~s 251 (601)
T PRK14090 183 DGIHGA--SFASEDLTGEKATKLS--IQV-GDPFAEK------MLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKG 251 (601)
T ss_pred CCcchH--HHHHHHhcCCcccccc--ccc-CCHHHHH------HHHHHHHhHHhcCCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 356654 33333232110 0000 000 0011111 1233445555667899999999999999999999 58
Q ss_pred CceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 311 GLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 311 ~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
++|++|+++++|+.+ .+++|+|++ |+|..+ |+++|++++.+++++.+++ ++++.+||+|++++.+++
T Consensus 252 g~G~~IdLdkVPl~~--------~~m~p~eil--~SESqeRmlv~V~~e~~~~~~~i~~~~~l~a~vIG~Vt~~~~l~~ 320 (601)
T PRK14090 252 GLGAIVHLDRVPLRE--------PDMEPWEIL--ISESQERMAVVTSPEKASRILEIAKKHLLFGDIVAEVIDDPIYRV 320 (601)
T ss_pred CCeEEEEecccccCc--------ccCCHHHHH--hcCCCCeEEEEECHHHHHHHHHHHHhCCCCEEEEEEEeCCceEEE
Confidence 999999999999875 268898884 776654 9999999999999999986 589999999998765543
No 25
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=4.7e-36 Score=322.28 Aligned_cols=293 Identities=24% Similarity=0.331 Sum_probs=215.6
Q ss_pred CcccccccccHHhHHHHHHHHHhcC----CCCCCceEEEecCC-ceEEEEeccCCCccccccccCChhHHHHHHHHHHHH
Q 046037 65 GLTYKDSGVDIDAGSELVRRIAKMA----PGIGGFGGLFPLGD-SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVN 139 (388)
Q Consensus 65 ~~~y~~~gv~~~~~~~~v~~i~~~~----~~~GdDaavi~~~~-~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvs 139 (388)
.++||.+ ..+++.+.... .++||||||+++++ ..+++++|. |+.+....|+++|++++..|+|
T Consensus 32 hc~~k~~-------~~~~~~~~~~~~~v~~g~gDDaavi~~~~~~~lv~~~e~-----h~~p~~~~P~~~a~~~v~~~vs 99 (715)
T TIGR01736 32 HCSYKSS-------KKLLKQFPTKGPNVIQGPGEDAGVVDIGDGYAVVFKMES-----HNHPSAIEPYNGAATGVGGILR 99 (715)
T ss_pred hcCCcCc-------HHHHhhCCCCCCcEEEeeCCceEEEEeCCCeEEEEEecc-----CCCCCCcCCCCchhhcccceec
Confidence 5889875 23444432222 27899999999875 457787775 2333344677999999999999
Q ss_pred HHhhhCChhHHHHHHhcCCCCC---H-HHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcc
Q 046037 140 DIVTSGAKPLFFLDYFATSHLE---V-DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSV 215 (388)
Q Consensus 140 DIaa~GA~P~~~ld~l~~~~~~---~-e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~ 215 (388)
||+||||+|++++++|.+++++ + +.++++++|+.++|+++|++++||||..++.+.. + ..+++|++|.++++++
T Consensus 100 Di~amGa~P~~~~~~l~~~~~~~~~~~~~l~~~~~Gi~~~~~~~Gv~ivGG~t~~~~~~~~-~-~~v~~t~iG~~~~~~~ 177 (715)
T TIGR01736 100 DILSMGARPIALLDSLRFGPLDDPKNRYLFEGVVAGISDYGNRIGVPTVGGEVEFDESYNG-N-PLVNVMCVGLVRKDDI 177 (715)
T ss_pred ccccCCCeEeeEEEEeccCCCCCcchHHHHHHHHHHHHHhccccCCCccceEEEEecCcCC-C-CeEEEEEEEEEchHHc
Confidence 9999999999999999876542 2 4689999999999999999999999998775432 2 3478899999998888
Q ss_pred cCCCCCCCCCEEEEeC-CCchHHHH-HHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEe
Q 046037 216 IDGKNIVPGDVLIGLP-SSGVHSNG-FSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIA 293 (388)
Q Consensus 216 l~~~~a~~GD~Ii~~g-~~G~~~~G-~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~ 293 (388)
+++++++|||.|+++| ++|..+.| .+++++.+..... ....+. ....+.+. .+...+.++++.+.+.+++||
T Consensus 178 ~~~~~a~~GD~Iv~~G~~~G~~g~gg~~~~~~~~~~~~~--~~~~~~--v~~~~~~~--~~~~~~~~~~l~~~~~v~a~~ 251 (715)
T TIGR01736 178 VTGKAKGPGNKLVLVGGKTGRDGIGGATFASEELSEEAE--EEDRPA--VQVGDPFT--EKLLIEATLEAVDTGLVKGIK 251 (715)
T ss_pred ccCCCCCCCCEEEEeCCCCCcCCccHHHHHHHHhccccc--cccCcc--cccCCcHH--HHHHHHHHHHHhccCCEEEEE
Confidence 9888899999999998 55543332 3444433321100 000110 00000000 012355666777677899999
Q ss_pred cCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CC
Q 046037 294 HITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TY 371 (388)
Q Consensus 294 DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~ 371 (388)
|+|+|||..+|+||+ .|++|++|+++++|+++. +++|.|++...+++ +|+|+|++++.+++++.+++ ++
T Consensus 252 Dis~gGL~~~l~ema~~s~~G~~I~l~~iP~~~~--------~~~~~e~~~se~qe-~ll~~v~~~~~~~~~~~~~~~g~ 322 (715)
T TIGR01736 252 DLGAAGLTSASSEMAAKGGLGAEIYLDKVPLREP--------GMTPYEIMLSESQE-RMLLVVAPEDVEEVLEIFEKYEL 322 (715)
T ss_pred EcCCchHHHhHHHHhccCCcEEEEEcccCccCCC--------CCCHHHHHHhcccc-eEEEEEChhhHHHHHHHHHHcCC
Confidence 999999999999999 589999999999998752 68888886444433 69999999999999998876 69
Q ss_pred CeEEEEEEEcCCceE
Q 046037 372 EAYHIGEVVNGEGVS 386 (388)
Q Consensus 372 ~~~~IG~V~~~~gv~ 386 (388)
++++||+|++++.+.
T Consensus 323 ~~~vIG~v~~~~~~~ 337 (715)
T TIGR01736 323 PASVIGEVTDEGRIR 337 (715)
T ss_pred CEEEEEEEecCCeEE
Confidence 999999999875544
No 26
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=2.3e-35 Score=281.00 Aligned_cols=251 Identities=20% Similarity=0.187 Sum_probs=184.5
Q ss_pred ceEEEecC---CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCC---CCC--HHHHH
Q 046037 95 FGGLFPLG---DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATS---HLE--VDLAE 166 (388)
Q Consensus 95 Daavi~~~---~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~---~~~--~e~~~ 166 (388)
||||++.+ +..+++|+|..+.. .+.+|+++||++|++|+|||++|||+|+++++++.++ +.+ .++++
T Consensus 1 Daav~~~~~~~~~~~~~t~d~~~~~-----~~~~p~~~g~~av~~~~sDiaa~Ga~P~~~~~~l~~~~~~~~~~~~~~l~ 75 (264)
T cd02204 1 DAAVLRIPGETDKGLAMSTGENPRY-----SLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNFGNPEKPEGEMGQLV 75 (264)
T ss_pred CcEEEEEeCCCCeEEEEEcCCCCce-----eeeCHHHHHHHHHHHHHHHHhhhCCchHheeeceeccCCCCCcchHHHHH
Confidence 89999987 45689999975432 2345789999999999999999999999999887642 222 24699
Q ss_pred HHHHHHHHHHHHcCCeEecccceeeCCccc-CCCcceEEEEEEEEcCCcccCC-CCCCCCCEEEEeCCCchHHHHHHHHH
Q 046037 167 KVIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVIDG-KNIVPGDVLIGLPSSGVHSNGFSLVR 244 (388)
Q Consensus 167 ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~-~~~~~ls~t~vG~v~~~~~l~~-~~a~~GD~Ii~~g~~G~~~~G~sl~~ 244 (388)
++++|+.++|+++|++++||||+.++..-. .....+++|++|.+++.+.+.+ +++++||.|+++++.|.+..|..++.
T Consensus 76 ~~~~g~~~~~~~~gv~ivGG~t~~~~~~~~~~~~~~~~~t~~G~~~~~~~~~~~~~a~~Gd~i~~~g~~g~~~~~~~~~~ 155 (264)
T cd02204 76 EAVLGLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYAL 155 (264)
T ss_pred HHHHHHHHHHHHhCCCcccceeCCccCCCCcccCCcCeEEEEEEccChhhccCcccCCCCCEEEEECCCCCCCCCcHHHH
Confidence 999999999999999999999986543210 0123578899999988766555 88999999999999998765544433
Q ss_pred HHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCC
Q 046037 245 RVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKV 323 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~ 323 (388)
...+... ...+........ ...+.+..+.+.+.+++|||||+|||+.+|+||+ .+++|++|+.+++|.
T Consensus 156 ~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~l~~~~~i~a~~DiSdGGL~~~l~ema~~s~~G~~i~~~~i~~ 224 (264)
T cd02204 156 AYHGLGG----GAPPLVDLEREK-------ALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDA 224 (264)
T ss_pred HhcCCCC----CCCCCCCHHHHH-------HHHHHHHHHHhCCCEEEEeeccccHHHHHHHHHHhcCCceEEEEcCCCCc
Confidence 2111110 111111111111 1234455666667799999999999999999999 489999999999988
Q ss_pred hHHHHHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEE
Q 046037 324 PAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEV 379 (388)
Q Consensus 324 ~~~~~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V 379 (388)
++ ++ +|++..+ +|++++++..+++. ++. ++++++||+|
T Consensus 225 ~~--------------~~--l~~e~~g~ll~~~~~~~~~~~~--~~~~~i~~~~IG~v 264 (264)
T cd02204 225 ED--------------EL--LFSESLGRVLVEVKPENEEVFE--AEEAGVPATVIGTV 264 (264)
T ss_pred cc--------------ce--eecCCCCeEEEEEChhHHHHHH--HHhCCCCeEEeecC
Confidence 75 11 3455545 89999998888876 444 6999999985
No 27
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=272.20 Aligned_cols=254 Identities=23% Similarity=0.334 Sum_probs=194.8
Q ss_pred CCCCceEEEecCCceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHHH
Q 046037 91 GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIK 170 (388)
Q Consensus 91 ~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~~ 170 (388)
..||||||+++++..|+++.|++..++. ..+|+.+||++|.+|+|||+|||++|++++|.+..+ ++++.+++++
T Consensus 41 ~~GDDAavI~v~~~~lliaadGi~g~l~----~~dPw~aG~csvLVn~~DV~amGG~Pv~~vd~isa~--s~d~~~ei~e 114 (324)
T COG2144 41 DFGDDAAVIRVGDGKLLIAADGIWGKLI----DADPWWAGYCSVLVNVNDVAAMGGEPVGAVDAISAK--SEDQAREILE 114 (324)
T ss_pred ccCCceEEEeeCCcEEEEecCCcccccc----ccCchhhhceeEEEeehhhhhhCCcceEEEEeeecC--CHHHHHHHHH
Confidence 5799999999999999999999977653 234669999999999999999999999999988654 7889999999
Q ss_pred HHHHHHHHcCCeEecccceeeCCcccCCCcceEEEE-EEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhc
Q 046037 171 GIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFA-VGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQ 249 (388)
Q Consensus 171 Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~-vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~ 249 (388)
||.++++.+|+|++||||... .+++++.++ .|++.++.+++..+|||||.|++++.+- | |...+
T Consensus 115 glr~~a~kfgvpivGGhthpd------~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d~~----g-----~~~p~ 179 (324)
T COG2144 115 GLRKGARKFGVPIVGGHTHPD------TPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGDLD----G-----KPYPN 179 (324)
T ss_pred HHHHHHHhcCCceecCccCCC------CCCceeeeEEecccccccccccCCCCcCCEEEEEeccC----C-----CcCCC
Confidence 999999999999999999832 345555555 5566666677789999999999987631 0 11111
Q ss_pred cCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhC--CccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHH
Q 046037 250 SDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEG--GVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAV 326 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~--~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~ 326 (388)
. ++.++..+..+ +.+.+..+++++++ +++|+.|+|.||++++|..|+ +|.+|+.++++++|.|..
T Consensus 180 ~------P~~wDttt~ka------~~~~~~~~e~l~e~a~l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP~p~~ 247 (324)
T COG2144 180 F------PLNWDTTTMKA------KEKFRAQLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIPYPAD 247 (324)
T ss_pred C------Cccccceeecc------HHHHHHHHHHHHHHHHHHhhcccccCccHHHHHHHHHHhhccCceeeecccCCccc
Confidence 1 12222111111 01222223333322 689999999999999999998 588999999999999874
Q ss_pred HHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 327 FKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 327 ~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
++..+|++.| .|++|+++++|++++++.+.+.+ ++++++||+|++++.+++
T Consensus 248 ---------vd~~~wlk~y-pg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~~L~i 299 (324)
T COG2144 248 ---------VDFRQWLKRY-PGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRI 299 (324)
T ss_pred ---------ccHHHHHHhC-CCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEEeccCceEEE
Confidence 4455566544 56679999999999999999877 699999999999987766
No 28
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=2.7e-34 Score=308.59 Aligned_cols=290 Identities=21% Similarity=0.273 Sum_probs=214.9
Q ss_pred CcccccccccHHhHHHHHHHHHhcC----CCCCCceEEEecCC-ceEEEEeccCCCccccccccCChhHHHHHHHHHHHH
Q 046037 65 GLTYKDSGVDIDAGSELVRRIAKMA----PGIGGFGGLFPLGD-SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVN 139 (388)
Q Consensus 65 ~~~y~~~gv~~~~~~~~v~~i~~~~----~~~GdDaavi~~~~-~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvs 139 (388)
.++||.+- .+++.+.... .++||||||+++++ ..++++++. |+.+....|+.+|+.+|..|+|
T Consensus 44 hc~~k~s~-------~~l~~~~~~~~~v~~g~gdDaavi~~~~~~~lv~~~Es-----h~~p~~~~P~~ga~~~v~~~i~ 111 (724)
T PRK01213 44 HCSYKSSK-------PLLRKFPTKGPRVLQGPGENAGVVDIGDGQAVVFKIES-----HNHPSAVEPYQGAATGVGGILR 111 (724)
T ss_pred cccCCCCH-------HHHhcCCCCCCcEEEeeCCCceEEEcCCCcEEEEEecc-----CCCCCccCCccchhhcccceec
Confidence 58899853 3333332221 27899999999974 467888763 4545445677899999999999
Q ss_pred HHhhhCChhHHHHHHhcCCCC----CHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcc
Q 046037 140 DIVTSGAKPLFFLDYFATSHL----EVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSV 215 (388)
Q Consensus 140 DIaa~GA~P~~~ld~l~~~~~----~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~ 215 (388)
||+||||+|+++++++.++++ +.+.++++++|+.++|+++|+|++||||...+++.. ++ .++++++|.++++++
T Consensus 112 Di~amGa~P~a~~~~l~~~~~~~~~~~~~l~~~~~Gi~~~~n~~Gvp~vgG~t~~~~~~~~-~p-~v~~~~iG~~~~~~~ 189 (724)
T PRK01213 112 DIFSMGARPIALLDSLRFGELDHPKTRYLLEGVVAGIGGYGNCIGVPTVGGEVYFDESYNG-NP-LVNAMCVGLVRHDDI 189 (724)
T ss_pred cccccCceeeeeeeEEEccCCCCCcHHHHHHHHHHHHHHHHHhcCCCEeeEEEEEeCCcCC-Cc-eEEEEEEEEEcHHHc
Confidence 999999999999999987654 346799999999999999999999999998876432 23 478899999988774
Q ss_pred cCCCCCC-CCCEEEEeCC----CchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCcc
Q 046037 216 IDGKNIV-PGDVLIGLPS----SGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVK 290 (388)
Q Consensus 216 l~~~~a~-~GD~Ii~~g~----~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~ 290 (388)
.+++++ |||.|+++|. .|.|+ .+++.+.+..... ...|. .++++.+.. +..++.++++++.+.++
T Consensus 190 -~r~~~~~~Gd~Ii~~G~~tg~~Gigg--~~~~s~~~~~~~~---~~~~~--vq~g~~~~~--~~l~~~~~~~~~~~~v~ 259 (724)
T PRK01213 190 -VLAKASGVGNPVVYVGAKTGRDGIGG--ASFASAELSEESE---EKRPA--VQVGDPFME--KLLIEACLELIKTGLVV 259 (724)
T ss_pred -ccCCCCCCCCEEEEeCCCcCcccCcH--HHHHHhhhhcccc---ccCcc--cccCCcHHH--HHHHHHHHHHhccCCEE
Confidence 455555 9999999776 45553 2344443322110 01111 111111111 12355666777778899
Q ss_pred EEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC
Q 046037 291 GIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG 369 (388)
Q Consensus 291 a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~ 369 (388)
+|||+|+|||..+|+||+ .+++|++|+++++|+.+. +++|.|++...+++ +|+++|+|++.+++++.+++
T Consensus 260 a~~D~g~gGL~~al~Ema~~s~~G~~I~ld~iP~~~~--------~~~p~ei~~sesqe-rml~~v~~~~~~~~~~~~~~ 330 (724)
T PRK01213 260 GIQDMGAAGLTCSSSEMAAKGGLGIELDLDKVPLREE--------GMTPYEIMLSESQE-RMLLVVKPGKEEEVLAIFEK 330 (724)
T ss_pred EEEECCCCcHHHhHHHHhccCCcEEEEEcccccccCC--------CCCHHHHHhccccc-eEEEEECHHHHHHHHHHHHH
Confidence 999999999999999999 489999999999998752 68999987555443 69999999999999999876
Q ss_pred -CCCeEEEEEEEcCCceEE
Q 046037 370 -TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 370 -~~~~~~IG~V~~~~gv~~ 387 (388)
++++++||+|++++.+++
T Consensus 331 ~~~~~~vIG~vt~~~~~~~ 349 (724)
T PRK01213 331 WDLDAAVIGEVTDDGRLRV 349 (724)
T ss_pred cCCCEEEEEEEecCCeEEE
Confidence 599999999998766554
No 29
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=1.8e-33 Score=302.39 Aligned_cols=264 Identities=18% Similarity=0.223 Sum_probs=197.9
Q ss_pred CCCCceEEEecCC-ce--EEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCC-H---H
Q 046037 91 GIGGFGGLFPLGD-SY--LVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-V---D 163 (388)
Q Consensus 91 ~~GdDaavi~~~~-~~--lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~-~---e 163 (388)
++|+||||+++++ .. +++++|+.+... ..+|+.+||.+|+.|+|||+||||+|+++++++++++++ + +
T Consensus 415 ~pgdDaaVi~~~~~~~~glv~t~D~~~~~~-----~~~P~~~g~~aV~~~vsDiaa~Ga~P~~~~~~l~~g~p~~~~~~~ 489 (715)
T TIGR01736 415 KPGEDAAVLRIKETGKLGLALTADCNPRYV-----YLDPYAGAAGAVAEAYRNLAAVGAEPLAAVDCLNFGNPERPEVYW 489 (715)
T ss_pred ccCCceEEEEecCCCceEEEEEecCCCCch-----hcCHHHHHHHHHHHHHHHHhhcCCeehhheeeeccCCCCChhHHH
Confidence 7899999999864 44 999999965432 245789999999999999999999999999999876553 2 2
Q ss_pred HHHHHHHHHHHHHHHcCCeEecccceeeCCcccC-CCcceEEEEEEEEcC-CcccCCCCCCCCCEEEEeCCCchHHHHHH
Q 046037 164 LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAA-GEYDLSGFAVGIVKK-DSVIDGKNIVPGDVLIGLPSSGVHSNGFS 241 (388)
Q Consensus 164 ~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~-~~~~ls~t~vG~v~~-~~~l~~~~a~~GD~Ii~~g~~G~~~~G~s 241 (388)
.++++++||.++|+++|++++||||+.++..... -..+++++++|.+++ ++++++..+++||.|+++|..|.+..|+.
T Consensus 490 ~l~~~~~gi~~~~~~~gv~ivGG~ts~~~~~~~~~i~pt~~v~~~G~~~~~~~~i~~~~a~~Gd~i~l~g~~g~~~~G~~ 569 (715)
T TIGR01736 490 QFVEAVKGLGDACRALGTPVVGGNVSLYNETNGVPIAPTPTIGMVGLVEDVEKLLTSNFKKEGDAIYLIGETKDELGGSE 569 (715)
T ss_pred HHHHHHHHHHHHHHHhCCCcccceeeeccccCCCCCCCcceEEEEEeccChhhccCcccCCCCCEEEEEeCCCCCccHHH
Confidence 4899999999999999999999999865432100 011467889999987 67888999999999999999999888887
Q ss_pred HHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCC
Q 046037 242 LVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDS 320 (388)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ 320 (388)
+++...... ....|.. .+.+. +.+.+.+.++++++.+++|||||+|||+.+|+||+ .+++|++|++++
T Consensus 570 ~~~~~~~~~----~~~~p~~--~~~~~-----~~~~~~i~~l~~~g~v~a~~DiSdGGL~~aL~ema~~s~~G~~I~l~~ 638 (715)
T TIGR01736 570 YLRVIHGIV----SGQVPAV--DLEEE-----KELADAVREAIRAGLVSAAHDVSRGGLAVALAEMAAASGIGAEVDIDE 638 (715)
T ss_pred HHHHhcCCc----CCcCCCC--CHHHH-----HHHHHHHHHHHHcCCeEEEEeCCcChHHHHHHHHHhCCCceEEEEcCC
Confidence 765432111 1122221 11110 11234455666778899999999999999999999 589999999999
Q ss_pred CCChHHHHHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCCCCCeEEEEEEEcCCceEE
Q 046037 321 WKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCGTYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 321 ip~~~~~~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~~~~~~~IG~V~~~~gv~~ 387 (388)
+|+. ++.++ +|++..| ||++|++++.+++++ +.++++++||+ +.++.+.+
T Consensus 639 ip~~------------~~~~~--lfses~g~~v~~v~~~~~~~~l~--~~gi~~~vIG~-~~~~~l~i 689 (715)
T TIGR01736 639 IASA------------RPDEL--LFSESNGRAIVAVPEEKAEEAVK--SKGVPAKVIGK-TGGDRLTI 689 (715)
T ss_pred CcCc------------chHHH--HhCCCCccEEEEECchHHHHHHH--HcCCCEEEEEE-ECCCeEEE
Confidence 9861 22333 3555555 999999998866655 23689999999 65555544
No 30
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=3.6e-33 Score=299.91 Aligned_cols=264 Identities=18% Similarity=0.185 Sum_probs=196.8
Q ss_pred CCCCceEEEecCC--ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCC-HH---H
Q 046037 91 GIGGFGGLFPLGD--SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-VD---L 164 (388)
Q Consensus 91 ~~GdDaavi~~~~--~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~-~e---~ 164 (388)
++|+||||+++++ ..+++++|+.+... ..+|+++||.+|++|+|||+||||+|++++++|++++++ ++ +
T Consensus 425 ~pGdDaAVi~~~~~~~~l~~s~D~~~~~~-----~~~P~~~g~~AV~~avsdiaa~Ga~P~~~~~~l~~~~p~~~~~~~~ 499 (724)
T PRK01213 425 KPGGDAAVLRIRGGGKGLALTTDCNPRYV-----YLDPYEGAKLAVAEAARNLAAVGATPLAITDCLNFGNPEKPEVMWQ 499 (724)
T ss_pred cCCCCeEEEEecCCCEEEEEEecCCCCcc-----ccCHHHHHHHHHHHHHHHHhccCCeehhheeeeecCCCCchHHHHH
Confidence 6799999999864 67999999975432 235789999999999999999999999999999877654 33 4
Q ss_pred HHHHHHHHHHHHHHcCCeEecccceeeCCcccCC-CcceEEEEEEEEcCCcccCCCCC-CCCCEEEEeCCCchHHHHHHH
Q 046037 165 AEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAG-EYDLSGFAVGIVKKDSVIDGKNI-VPGDVLIGLPSSGVHSNGFSL 242 (388)
Q Consensus 165 ~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~-~~~ls~t~vG~v~~~~~l~~~~a-~~GD~Ii~~g~~G~~~~G~sl 242 (388)
+.++++|+.++|+++|+|++||||+.++..-... ..+++++++|.+++.+.+.+.++ ++||.|+++|..|.+..|..+
T Consensus 500 l~~~~~Gi~~a~~~~gvpivGG~~s~~n~~~~~~i~pt~~vt~vG~~~~~~~~~~~~~k~~GD~I~l~g~~~~~~ggs~~ 579 (724)
T PRK01213 500 FVEAVRGLADACRALGTPVVGGNVSLYNETGGTAIYPTPVIGMVGLIDDVSKRTTSGFKKEGDLIYLLGETKDELGGSEY 579 (724)
T ss_pred HHHHHHHHHHHHHHhCCCcccceeeeeCCCCCcccCCcceEEEEEEecCHhhCcChhcCCCCCEEEEEcCCCCCccHHHH
Confidence 9999999999999999999999998764321010 12567889999976455556666 999999999999988777666
Q ss_pred HHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCC
Q 046037 243 VRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSW 321 (388)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~i 321 (388)
++...+.. ....|.. .+.+. +.+.+.+..+++++.++||||||+|||+.+|+||+ .+++|++|+++.
T Consensus 580 ~~~~~~~~----~~~~p~~--~~~~~-----~~~~~~l~~l~~~g~v~a~~DvSdGGL~~aL~ema~as~~G~~I~l~~- 647 (724)
T PRK01213 580 LKVIHGHV----GGRPPKV--DLEAE-----KRLQELVREAIREGLVTSAHDVSEGGLAVALAEMAIAGGLGAEVDLSD- 647 (724)
T ss_pred HHHhcCCc----CCCCCCC--CHHHH-----HHHHHHHHHHHHCCCeEEEEeCCcCcHHHHHHHHHhcCCceEEEEeCC-
Confidence 54322211 1122321 11111 11234445566678899999999999999999998 589999999763
Q ss_pred CChHHHHHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 322 KVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 322 p~~~~~~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
+.+ +.++ +|++..+ +|++|++++.+++++.++. ++++++||+|++ +.+.+
T Consensus 648 ~~~-------------~~~~--Lf~e~~g~~v~~V~~~~~~~v~~~l~~~gi~~~~IG~v~~-~~l~i 699 (724)
T PRK01213 648 GLR-------------PDAL--LFSESQGRYVVSVPPENEEAFEALAEAAGVPATRIGVVGG-DALKV 699 (724)
T ss_pred CCC-------------hHHH--hhCCCCceEEEEEchhHHHHHHHHHHHCCCCeEEEEEEcC-CEEEE
Confidence 222 2222 3555544 9999999999999998876 689999999976 55544
No 31
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=7.9e-33 Score=264.87 Aligned_cols=249 Identities=15% Similarity=0.141 Sum_probs=185.5
Q ss_pred eEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhC--ChhHHHHHHhcCC--CC-CHHHHHHHHHHHHHHHHHc
Q 046037 105 YLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSG--AKPLFFLDYFATS--HL-EVDLAEKVIKGIVDGCQQS 179 (388)
Q Consensus 105 ~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~G--A~P~~~ld~l~~~--~~-~~e~~~ei~~Gi~~~c~~~ 179 (388)
.+++++|...... .-+|+++||.+|+.|+|||+||| |+|++++++++++ ++ +++++.++++|+.++|+++
T Consensus 2 ~~a~~~~~~~~~~-----~~~p~~g~~~av~~~~~diaa~G~~a~P~~~~~~l~~~~~~p~~~~~l~~~~~gi~~a~~~~ 76 (272)
T cd02193 2 GEAMKIEEHNHPA-----AIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGHPGEDAILYDAVKGVAELCNQL 76 (272)
T ss_pred ccEEeecCCCCcc-----ccChHHHHHHHHHHHHhhhhhcCCCccceEEeeecccCCCCCCHHHHHHHHHHHHHHHhHhh
Confidence 4688999886332 34577999999999999999999 9999999999865 34 3689999999999999999
Q ss_pred CCeEecccceeeCCc-cc--------CCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeC----CCchHHHHHHHHHHH
Q 046037 180 DCVLLGGETAEMPDF-YA--------AGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLP----SSGVHSNGFSLVRRV 246 (388)
Q Consensus 180 g~~lvGGdt~~~p~~-~~--------~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g----~~G~~~~G~sl~~~~ 246 (388)
|+|++||||+.++.. ++ ..+.++++|++|.+++.+.+.+..+++||.|+++| ..|.++.++. ...
T Consensus 77 g~pivgG~~s~~~~~~~~~~~~~~~~~~~p~~~vt~~G~~~~~~~~~~~~~~~Gd~I~~~g~~~~~~g~~Gs~~~--~~~ 154 (272)
T cd02193 77 GLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLGGTALA--SVA 154 (272)
T ss_pred CCcccCCEeccccceecccCCCceEEEeCCEEEEEEEEEecCcceecccCCCCCCEEEEECCCCCCCccchHHHH--hhh
Confidence 999999999976532 00 01246788999999987777778899999999997 4577665433 221
Q ss_pred HhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChH
Q 046037 247 LAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPA 325 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~ 325 (388)
+........ ..+....... +.+.+.+..+++++.+++|||+|+|||+.+|+||+ .|++|++|+++++|+++
T Consensus 155 ~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~g~i~a~hDvs~GGL~~aL~Ema~~s~~G~~i~l~~ip~~~ 226 (272)
T cd02193 155 LSYRQLGDK-SAQVRDPAQE-------KGFYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDE 226 (272)
T ss_pred hhhcccCCC-CCCCCCHHHH-------HHHHHHHHHHHHCCCEEEEeeCCcchHHHHHHHHHhcCCCEEEEEeCCCcCCC
Confidence 111111110 0111100111 11233444566778899999999999999999998 58999999999999875
Q ss_pred HHHHHHHhCCCCHHHHHhhcCCCe-eEEEEEecccHHHHHHhcCC-CCCeEEEEE
Q 046037 326 VFKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGGCG-TYEAYHIGE 378 (388)
Q Consensus 326 ~~~~i~~~~~~~~~e~~~~f~~G~-gll~~v~~e~~~~i~~~l~~-~~~~~~IG~ 378 (388)
. +++|.+++ |+++. ++|++|++++.+++++.+++ ++++++||+
T Consensus 227 ~--------~~~p~~~~--~ses~~~~l~~v~~~~~~~~~~~~~~~gi~~~~IG~ 271 (272)
T cd02193 227 P--------DMEPLEIA--LFESQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred C--------CCCHHHHH--HhhhccCeEEEECHHHHHHHHHHHhccCCCeEEecc
Confidence 2 57787764 65553 38999999999999999987 689999996
No 32
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=6.8e-26 Score=212.99 Aligned_cols=264 Identities=19% Similarity=0.262 Sum_probs=201.6
Q ss_pred CCCceEEEecC-CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCC--CCCHHHHHHH
Q 046037 92 IGGFGGLFPLG-DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATS--HLEVDLAEKV 168 (388)
Q Consensus 92 ~GdDaavi~~~-~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~--~~~~e~~~ei 168 (388)
.+||++|++++ +..++.|+|.+ .+..+.+++.|+.+.+..+||+.+||++|+-.+..++++ .++.+.++++
T Consensus 48 ~~dda~vy~ig~g~~iIsT~df~------mpivddp~dfG~IaAtNaIsDv~amgg~pi~AiAI~g~~~~~l~~~i~~ei 121 (346)
T COG0709 48 TGDDAAVYDLGNGHSIISTTDFF------MPIVDDPFDFGRIAATNAISDVFAMGGKPIMAIAILGFPNDLLDKEIAQEV 121 (346)
T ss_pred ccCcceeEEecCCcEEEEeccee------eecccCcchhhhhhhcccccchhhcCCcchhhhhhcCCcccccCHHHHHHH
Confidence 69999999996 67889999965 344677889999999999999999999999888777654 4689999999
Q ss_pred HHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHh
Q 046037 169 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 248 (388)
Q Consensus 169 ~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~ 248 (388)
..|=.+.|++.++++.|||+-..|. +.+ ...++|.++.++..+.+++++|+.|++|+++|.... +-..+
T Consensus 122 ~~gg~~~~rea~i~lagGhsIdapE----P~f--Glav~G~~~~~k~~~n~~a~~G~~lilTKPlG~gil--~ta~k--- 190 (346)
T COG0709 122 IEGGRDACREAGIALAGGHSIDAPE----PIF--GLAVTGIVPTGKVKRNSTAKAGCKLILTKPLGIGIL--TTAEK--- 190 (346)
T ss_pred HHhhHHHHHHhCccccCCcccCCCC----ccc--ceeeecccchhhhcccccccCCcEEEEecCccccee--hhhhh---
Confidence 9999999999999999999987762 233 334689999888888899999999999999996531 11111
Q ss_pred ccCCccccCCC-CchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhcC-CCceEEEEcCCCCChHH
Q 046037 249 QSDLSLKDQLP-SENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 326 (388)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~~-s~~g~~I~~~~ip~~~~ 326 (388)
++ .+. +......+.+.+|.+ ...+.+..-.+++|+|||+.||+++++|||. |++.++|...++|.++.
T Consensus 191 -~~-----~L~~e~~~~ale~M~~lN~----~~~~~~~~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~lf~~~ip~l~~ 260 (346)
T COG0709 191 -KG-----LLKEEHKGLALENMCTLNK----IGAQFAPDFGVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDG 260 (346)
T ss_pred -hh-----ccCHHHHHHHHHHHhhhhH----HHHHhCccCCcceeecccCchHHHHHHHHHhhcCCcEEEeeccCCCcHH
Confidence 11 111 112234455555543 3444555567999999999999999999995 99999999999998887
Q ss_pred HHHHHHhC-------------------CCCHHHHHhhc---CCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCC
Q 046037 327 FKWIQQAG-------------------RIEDSEMRRTF---NMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGE 383 (388)
Q Consensus 327 ~~~i~~~~-------------------~~~~~e~~~~f---~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~ 383 (388)
.++..+.+ +++.++...+. ++| ++++.|.++...++.+.+++ +++.+.||++.+..
T Consensus 261 ~e~~~~~g~iP~gt~~n~~s~~~~~~~~l~e~~~~lL~dpqtsg-glLiav~~~~~~~~~~i~~e~~~~~~~i~~l~~k~ 339 (346)
T COG0709 261 VEFYIENGIIPGGTARNFGSYGIFAGKDLPEEQKLLLCDPQTSG-GLLIAVVPEGKGEGLEIAPELGIQLIIIGELVAKQ 339 (346)
T ss_pred HHHHHHcCCCcCccccchhHHHHhccccccHHHHHHhcCCCCCC-ceEEEEecccccchheecchhccceehhhhHHhhc
Confidence 77665543 23333322221 444 58999988888888877776 58999999988665
No 33
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.93 E-value=2.2e-26 Score=239.41 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=222.6
Q ss_pred CcccccccccHHhHHHHHHHHHhc--C----CCCCCceEEEecCCc-eEEEEeccCCCccccccccCChhHHHHHHHHHH
Q 046037 65 GLTYKDSGVDIDAGSELVRRIAKM--A----PGIGGFGGLFPLGDS-YLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMS 137 (388)
Q Consensus 65 ~~~y~~~gv~~~~~~~~v~~i~~~--~----~~~GdDaavi~~~~~-~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~n 137 (388)
.++||.+ ..+++.+... . .++|++|+++++++. .+++....- -.|..-.|+..+.-.|..-
T Consensus 56 HC~yKss-------k~~lk~~~~t~~~~~vi~g~gdnAgvvdi~d~~~v~fKvESH-----NHPSaIePy~GAATGvGGi 123 (743)
T COG0046 56 HCSYKSS-------KSLLKMFPTTHTGEYVLSGPGDNAGVVDIGDGWAVVFKVESH-----NHPSAIEPYQGAATGVGGI 123 (743)
T ss_pred hcCccch-------HHHHhhCCCCCCCCeEEEcccCCcceEEeCCcEEEEEEeccC-----CCCCccCCCCCcccccCce
Confidence 5899998 4566666543 2 489999999999865 466666653 3344445678899999999
Q ss_pred HHHHhhhCChhHHHHHHhcCCCCCH----HHHHHHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCC
Q 046037 138 VNDIVTSGAKPLFFLDYFATSHLEV----DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKD 213 (388)
Q Consensus 138 vsDIaa~GA~P~~~ld~l~~~~~~~----e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~ 213 (388)
++|+.+|||+|++.++.|.++.++. ..+.+++.||+.--+++|+|-+||++...+.+. ..++ +.+.|+|.++++
T Consensus 124 IRDv~smGArPiA~l~~l~fG~~~~~~~~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~y~-~npL-vna~~vG~i~~~ 201 (743)
T COG0046 124 IRDVLSMGARPIALLDSLRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYV-GNPL-VNAGCVGLIRKE 201 (743)
T ss_pred eecccccCceeeeeecccccCCCCCchhhhHHhccccchhhcCccccccccceEEEEccccC-CCce-EEEEEeeecchh
Confidence 9999999999999999999887653 466677778888888899999999999998644 3455 456799999998
Q ss_pred cccCCCCCCCCCEEEEeCC----CchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCc
Q 046037 214 SVIDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGV 289 (388)
Q Consensus 214 ~~l~~~~a~~GD~Ii~~g~----~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v 289 (388)
++.+....+|||.|+++|. .|+|++. ...+.+.... .....+ ..+.++.+.. +...+.++++.+.+.|
T Consensus 202 ~i~~~~a~~~G~~li~~Gg~TgrDGigGat--~aS~~~~~~~--~e~dr~--aVQvGdPf~E--k~l~ea~le~~~~~~I 273 (743)
T COG0046 202 HIVKGEAIGPGDKLILLGGKTGRDGIGGAT--FASMELGEES--EEEDRP--SVQVGDPFME--KRLQEAILECVQTGLI 273 (743)
T ss_pred heeeccCCCCCCEEEEEcCCccccccCchh--hhhhhhCcch--hhhcCC--ccccCChHHH--HHHHHHHHHHHhcCCe
Confidence 8877777899999999986 4566543 3333333111 111122 2344444432 3456777888888899
Q ss_pred cEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCe-eEEEEEecccHHHHHHhc
Q 046037 290 KGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGG 367 (388)
Q Consensus 290 ~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~-gll~~v~~e~~~~i~~~l 367 (388)
.+++|+..|||..++.||+ +.++|++|+++++|+.+ -+++|.|++ .||.. +|+++|.|++.+++++.+
T Consensus 274 ~~i~DlGAgGLs~A~~Ela~~gg~G~~i~Ld~VP~rE--------~gMsp~Ei~--~SESQERMllvv~p~~~e~~~~i~ 343 (743)
T COG0046 274 KGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLRE--------PGMSPYEIW--LSESQERMLLVVAPEDVEEFLEIC 343 (743)
T ss_pred EEEeccCCchhhhhHHHHHhccCCeEEEEhhcCcccC--------CCCCHHHHH--HhccchheEEEEccccHHHHHHHH
Confidence 9999999999999999998 57999999999999864 489999996 45554 499999999999999999
Q ss_pred CC-CCCeEEEEEEEcCCceE
Q 046037 368 CG-TYEAYHIGEVVNGEGVS 386 (388)
Q Consensus 368 ~~-~~~~~~IG~V~~~~gv~ 386 (388)
++ ..++.+||+||+++.+.
T Consensus 344 ~k~~l~~aVVG~vT~~~~~~ 363 (743)
T COG0046 344 EKERLPAAVVGEVTDEPRLV 363 (743)
T ss_pred HHcCCCeEEEEEEecCceEE
Confidence 87 59999999999886543
No 34
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.93 E-value=3.7e-24 Score=222.95 Aligned_cols=261 Identities=19% Similarity=0.211 Sum_probs=192.1
Q ss_pred CCCCCceEEEecC---C--ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCC-H-
Q 046037 90 PGIGGFGGLFPLG---D--SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-V- 162 (388)
Q Consensus 90 ~~~GdDaavi~~~---~--~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~-~- 162 (388)
||++.||||++++ . ..+++|+|+.+....+ +|+..|+.+|+.++++|+|+||+|++++|+|++++++ +
T Consensus 444 pG~~~DaaV~r~~~~~~~~~g~A~t~~~np~~~~l-----dpy~Ga~~aVaEa~rNl~a~Ga~pla~~d~lnfg~pe~pE 518 (743)
T COG0046 444 PGPVADAAVLRISEDSGTGKGLAMTTGENPRYALL-----DPYAGAKLAVAEALRNLAATGAKPLALTDNLNFGNPEKPE 518 (743)
T ss_pred CCCCcceEEEEecccCCCcceEEEEcCCCCcceEE-----ChhHHHHHHHHHHHHHHHhhCCcchhhhhhhccCCCCChh
Confidence 4444999999986 2 2499999999866543 3569999999999999999999999999999998875 3
Q ss_pred --HHHHHHHHHHHHHHHHcCCeEecccceeeCCccc-CCCcceEEEEEEEEcC-CcccCCCCCCCCCEEEEeCCCchHHH
Q 046037 163 --DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKK-DSVIDGKNIVPGDVLIGLPSSGVHSN 238 (388)
Q Consensus 163 --e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~-~~~~~ls~t~vG~v~~-~~~l~~~~a~~GD~Ii~~g~~G~~~~ 238 (388)
.++.+.++|+.|+|+.+|+|++||+++.+..... +-..+++++++|.++. .+.++....+.||.|+++|..-.+..
T Consensus 519 ~~~q~~~a~~g~~eac~~l~~pvv~GnvSlynet~~~~i~PTpvi~~vg~v~dv~k~~~~~~~~~g~~i~llG~~~~~lg 598 (743)
T COG0046 519 VMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPPTPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELG 598 (743)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccceeeeeeccCCcccCCcceEEEEEEeechhhhcCccccCCCcEEEEeCCCccccc
Confidence 3678889999999999999999999997643211 1123677889999985 45666666689999999998766665
Q ss_pred HHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEE
Q 046037 239 GFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIY 317 (388)
Q Consensus 239 G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~ 317 (388)
|..+++-..... ...+|.. ++.+. +.+.+.++++.+++.+.++||+|+|||+.+|.+|+ .+++|++|+
T Consensus 599 gS~~~~~~~~~~----~g~~p~~--dl~~e-----k~~~~~i~~~i~~~~v~aahD~s~GGL~~aLaemaf~~~~G~~i~ 667 (743)
T COG0046 599 GSELAQVYHGLG----DGPPPVV--DLAEE-----KKFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLEID 667 (743)
T ss_pred hhHHHHHHhccc----CCCCCCC--CHHHH-----HHHHHHHHHHHhcCceEEEEEcccccHHHHHHHHHhccCCceEEE
Confidence 655554332211 1233322 22221 23566778888889999999999999999999998 688999999
Q ss_pred cCCCCChHHHHHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEEEcC
Q 046037 318 EDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEVVNG 382 (388)
Q Consensus 318 ~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~ 382 (388)
.+..+-+ .+. ..+||+..+ +++++++++++ .+..+. ..++.+||.++..
T Consensus 668 ~~~~~~~------------~~~--~~LFsE~~gr~i~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~ 718 (743)
T COG0046 668 LDELGDD------------RLD--ALLFSESLGRVIVVVAEEEAE--VEGAEAVGVPLKVIGLVGGD 718 (743)
T ss_pred ccccccc------------chh--hHhhCcCCCcEEEEecchhhh--hhhhhhcCceeeeeeecccc
Confidence 8765533 111 236888876 88888877655 222222 4678889987644
No 35
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.6e-24 Score=200.63 Aligned_cols=294 Identities=19% Similarity=0.324 Sum_probs=211.7
Q ss_pred CcccccccccHHh--------HHHHHHH-HHhcC--------CCCCCceEEEecCCceEEEEeccCCCccccccccCChh
Q 046037 65 GLTYKDSGVDIDA--------GSELVRR-IAKMA--------PGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHD 127 (388)
Q Consensus 65 ~~~y~~~gv~~~~--------~~~~v~~-i~~~~--------~~~GdDaavi~~~~~~lv~stD~~~~k~~~~~~~~~~~ 127 (388)
-+.|-.|||--.+ |+-|+.+ |.+.. |.--||++++++++.+++++.|++...+. .-|+
T Consensus 66 ~l~~p~sgV~mGe~GvGSRG~GDf~VH~kl~e~~~~tga~vs~ee~DDaGvvr~~~~yivvaiDGiHSRLS-----efPF 140 (449)
T COG1973 66 ILGYPKSGVGMGEMGVGSRGEGDFFVHEKLAELAGKTGAVVSPEELDDAGVVRIENDYIVVAIDGIHSRLS-----EFPF 140 (449)
T ss_pred cccCCcCCCcccccccCcCcccchhHHHHHHHHHhccccccCHHHcCCCCeEEecCceEEEEecchhhhhh-----cCcc
Confidence 5778888886543 5555433 22221 45569999999999999999999976553 2356
Q ss_pred HHHHHHHHHHHHHHhhhCChhHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEecccceeeCC-cccCCCcceEEE
Q 046037 128 TIGIDLVAMSVNDIVTSGAKPLFFL-DYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPD-FYAAGEYDLSGF 205 (388)
Q Consensus 128 ~iG~~aVa~nvsDIaa~GA~P~~~l-d~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~-~~~~~~~~ls~t 205 (388)
..|+.+...+++|+.+|||+|++++ |.-...+-|...+-++..|+...|+..|+|+++|.|-...| ++-+..+.=++-
T Consensus 141 LaGFhvtRAalRDv~vmGa~p~alisDiHlaDDgDVgklfDf~AGvtaVsea~~vPl~aGSTLRiGGDmVlGdRl~~~Vg 220 (449)
T COG1973 141 LAGFHVTRAALRDVYVMGARPVALISDIHLADDGDVGKLFDFTAGVTAVSEAVGVPLLAGSTLRIGGDMVLGDRLVGAVG 220 (449)
T ss_pred hhhhHHHHHHHHHHHHcCcccceeeeeeeeccCcchhhhhhhhhhhhHHHHHhCCceecccceEEcCeeEeechhhcccc
Confidence 8899999999999999999999988 65556667888999999999999999999999999976643 333334433445
Q ss_pred EEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHH-HHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHH
Q 046037 206 AVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFS-LVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDII 284 (388)
Q Consensus 206 ~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~s-l~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~ 284 (388)
|+|+.+ +++.+|.+++|||+|++|-..|-..-..+ ++...+ ++.++-+. -.+++++..++
T Consensus 221 ~iGi~k-~~~t~Rr~~~~Gd~IlmTEGaGGGTi~TTAiY~Gm~----------------DVv~ETln--v~fi~a~eai~ 281 (449)
T COG1973 221 AIGISK-SELTPRRRAEPGDVILMTEGAGGGTIATTAIYHGMH----------------DVVEETLN--VDFIRACEAIV 281 (449)
T ss_pred eeeeec-CCCChhccCCCCCEEEEecCCCCceeehhhhhcccH----------------HHHHHhcC--hHHHHHHHHHH
Confidence 788876 56888999999999999987764322122 221111 11222111 11344454555
Q ss_pred HhC---CccEEecCCCChhhhhhhhhcC-CCceEEEEcCCCC--ChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecc
Q 046037 285 SEG---GVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWK--VPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKE 358 (388)
Q Consensus 285 ~~~---~v~a~~DIS~GGL~~~L~~~~~-s~~g~~I~~~~ip--~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e 358 (388)
+++ .+|+|+|+|.||+-++..|+.+ +++++.+|.+++- +.|-+..+.+.++++|.-. +-+ .+++++|++
T Consensus 282 ~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~sliNpkVl~MLeel~ID~lGv----SiD-slmii~ped 356 (449)
T COG1973 282 RSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKMLEELNIDPLGV----SID-SLMIIAPED 356 (449)
T ss_pred HhhhhhhhhhhhhccCCcccccHHHhhhhcCeeEEEcHHHHHhhcCHHHHHHHHHcCCCcccc----ccc-eEEEecchh
Confidence 554 5899999999999999999985 7999999987652 3344445556678888321 122 278888999
Q ss_pred cHHHHHHhcCC-CCCeEEEEEEEcC-CceEE
Q 046037 359 TSHTILEGGCG-TYEAYHIGEVVNG-EGVSY 387 (388)
Q Consensus 359 ~~~~i~~~l~~-~~~~~~IG~V~~~-~gv~~ 387 (388)
.++.+.+.++. ++.+.+||+|+++ .++++
T Consensus 357 ~a~~v~k~~~~agvr~~~vG~Vee~~~~~~l 387 (449)
T COG1973 357 VADLVKKALRGAGVRAEEVGRVEEGGQGVIL 387 (449)
T ss_pred hhHHHHHHHHhcCcceeEEeeeecCCcceEE
Confidence 99999999876 7999999999984 56544
No 36
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.91 E-value=2e-23 Score=232.92 Aligned_cols=284 Identities=15% Similarity=0.085 Sum_probs=199.9
Q ss_pred HHHHHHHHHhcC--------CCCCCceEEEecC---------------------CceEEEEeccCCCccccccccCChhH
Q 046037 78 GSELVRRIAKMA--------PGIGGFGGLFPLG---------------------DSYLVAGTDGVGTKLKLAFETGIHDT 128 (388)
Q Consensus 78 ~~~~v~~i~~~~--------~~~GdDaavi~~~---------------------~~~lv~stD~~~~k~~~~~~~~~~~~ 128 (388)
...+.+.||... .+.+|++|+++.. +..+++++|.....+. -.|+.
T Consensus 234 ~~slf~~i~~t~~~~~~~~~~~~~dNa~vi~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~k~Ethnhpt~-----i~Py~ 308 (1310)
T TIGR01735 234 DKSLFQMIKSTHEANPENTVSAYKDNSSVIEGHKVGRLRPDPPTRPEYRQHQEDLVHILMKVETHNHPTA-----IAPFP 308 (1310)
T ss_pred chhHHHHHHhhhhcCCCceEEEecCcEEEEEcccccccccccccccccccccccceEEEEEeccCCCCCc-----cCchh
Confidence 355666664322 2678999999843 2468889988764333 34669
Q ss_pred HHHHHHHHHHHHHhhh--CChhHHHHHHhcCCCCC--------------HH-------HHHHHHHHHHHHHHHcCCeEec
Q 046037 129 IGIDLVAMSVNDIVTS--GAKPLFFLDYFATSHLE--------------VD-------LAEKVIKGIVDGCQQSDCVLLG 185 (388)
Q Consensus 129 iG~~aVa~nvsDIaa~--GA~P~~~ld~l~~~~~~--------------~e-------~~~ei~~Gi~~~c~~~g~~lvG 185 (388)
.+.-+|...++|++|+ ||+|++.+|++++++++ ++ .+.+.++|+++.|+++|+|+|+
T Consensus 309 GAatgvgg~iRD~~a~GrGa~PiA~~d~l~fg~p~~~~~~~~~e~~~~~P~~~~~p~~Il~e~~~G~~~~gn~~G~P~v~ 388 (1310)
T TIGR01735 309 GASTGAGGEIRDEGATGRGAKPKAGLTGFCVSNLNIPGLEQPWEDPFQKPERIASPLDIMIEAPLGAAAFNNEFGRPNLL 388 (1310)
T ss_pred hHHHHHhHhHhChhhhCCCCeeeeeeeeeecCCCCCCCCCCccccccCCchhhccHHHHHHHHHHHHHHHhhhhCCcccc
Confidence 9999999999999999 99999999999988872 11 2777799999999999999999
Q ss_pred ccceeeCCccc---------CCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCC----chHHHHHHHHHHHHhccCC
Q 046037 186 GETAEMPDFYA---------AGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSS----GVHSNGFSLVRRVLAQSDL 252 (388)
Q Consensus 186 Gdt~~~p~~~~---------~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~----G~~~~G~sl~~~~~~~~~~ 252 (388)
|+++....-+. -.+ .+...++|.+++.+ +.+...++||.|+++|.. |+++.-++-+ .......
T Consensus 389 G~vs~f~~~~~~~~g~~~~~~~P-~~~~g~vG~i~~~~-~~~~~~~~G~~ivllGg~~~rdglgGs~~ss~--~~g~~~~ 464 (1310)
T TIGR01735 389 GYFRTFELKASLPGGQVRGYHKP-IMLAGGIGSIDAEH-IQKGEIEPGALLIVLGGPAMLIGLGGGAASSM--VSGTNTA 464 (1310)
T ss_pred eeeeeccccccccccccccccCC-ccEEEEEEEechhh-cccCCCCCCCEEEEECCCCCCCCccHHHHHHH--HhCCCcc
Confidence 99964432110 012 34456899999865 556668999999999853 5665432221 1111000
Q ss_pred cc-ccCCCCchhHHHHHhhccchhhHHHHHHHHH---hCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHH
Q 046037 253 SL-KDQLPSENTTLGEALMAPTVIYVKQVLDIIS---EGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVF 327 (388)
Q Consensus 253 ~~-~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~---~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~ 327 (388)
++ ...++. .....| +...+.+..+++ .+.|.++||++.|||..+|.||+ ++++|++|+++++|..+
T Consensus 465 ~~~~~~Vq~-gdp~~e------k~~~~~i~~~~~~~~~~~i~sihD~gaGGls~al~Ema~~~g~G~~i~L~~vp~~~-- 535 (1310)
T TIGR01735 465 DLDFASVQR-GNPEME------RRCQEVIDRCWQLGEKNPIISIHDVGAGGLSNALPELIHDGGRGAVIDLRAVPLDD-- 535 (1310)
T ss_pred cccCCCCCC-CCHHHH------HHHHHHHHHHHHcCCCCceEEEeccCccHHHHHHHHHHhcCCceEEEEcCCCcccC--
Confidence 00 001111 011111 111222333333 34799999999999999999998 57899999999998753
Q ss_pred HHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 328 KWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 328 ~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
-+++|.|+ +|||..+ |+++|+|++.+++.+.+++ ++++++||+|+++..+.+
T Consensus 536 ------~~m~~~ei--l~sESQeR~vl~v~~~~~~~f~~i~~~~~~~~~vIG~vt~~~~l~v 589 (1310)
T TIGR01735 536 ------PGLSPLEI--WCNESQERYVLLVRAENLEIFTAICERERCPFAVVGTATGDGRLTL 589 (1310)
T ss_pred ------CCCCHHHH--hhccccccEEEEECcccHHHHHHHHHHcCCCEEEEEEECCCceEEE
Confidence 36788877 4788765 9999999999999999876 689999999998665543
No 37
>PHA03366 FGAM-synthase; Provisional
Probab=99.90 E-value=3.7e-22 Score=222.97 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=183.2
Q ss_pred ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhH-HHHHHhcCCCCC----HHHHHHHHHHHHHHHHH
Q 046037 104 SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPL-FFLDYFATSHLE----VDLAEKVIKGIVDGCQQ 178 (388)
Q Consensus 104 ~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~-~~ld~l~~~~~~----~e~~~ei~~Gi~~~c~~ 178 (388)
..+++++|..+.+..+ +|+..++.+|+.++++|++.|++|+ .+.+++++..+. ...+.+.++||.|+|++
T Consensus 689 ~G~A~siGe~p~~~~l-----DP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP~~p~~~a~L~eav~ai~e~C~~ 763 (1304)
T PHA03366 689 PGTCSALGEQGYKVQL-----DPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWPPTDQAASELYRALAACKEFCRE 763 (1304)
T ss_pred CEEEEecCCCceEEEc-----CHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4689999988876654 3569999999999999999999998 777888654432 45899999999999999
Q ss_pred cCCeEecccceeeCC-------cccCCCcceEEEEEEEEcC-CcccCCCCCCCCCEEEEeCCC-chHHHHHHHHHHHHhc
Q 046037 179 SDCVLLGGETAEMPD-------FYAAGEYDLSGFAVGIVKK-DSVIDGKNIVPGDVLIGLPSS-GVHSNGFSLVRRVLAQ 249 (388)
Q Consensus 179 ~g~~lvGGdt~~~p~-------~~~~~~~~ls~t~vG~v~~-~~~l~~~~a~~GD~Ii~~g~~-G~~~~G~sl~~~~~~~ 249 (388)
+|++|++|+++.+.. ++++ ..+.+++++.++. .+.++....++||.|++++.. +....| |.+.+.+..
T Consensus 764 LgIpIv~G~~S~yne~~~~~~~i~~p--ptIvisg~~~~~dv~k~vTp~lk~~G~~L~lIg~~~~~~LgG-S~laq~~~~ 840 (1304)
T PHA03366 764 LGVNFTFTSASSSPRQDQPPQPGPLF--NTIVFTASAPVPSSTPRLTPDLKKPGSALVHLSISPEYTLAG-SVFEQIFGL 840 (1304)
T ss_pred cCCCEeeeecccccccCCCCccccCC--CeEEEEEEEEccCcccccCcccCCCCCEEEEEeCCCCCCcch-hHHHHhhcc
Confidence 999999999997642 2222 2455566666565 367777777889999998754 433334 555555533
Q ss_pred cCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHH
Q 046037 250 SDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFK 328 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~ 328 (388)
.+ ..+|...-... +...+.+.++++++.|.|+||||+|||+.+|.||+ .+++|++|+++.
T Consensus 841 ~g----~~~P~vd~~~l-------k~~f~~v~~Li~~glI~A~HDVSdGGL~~ALaEMAfag~~G~~Idl~~-------- 901 (1304)
T PHA03366 841 KS----GTLPDISPSYL-------KNLFRAVQHLISEGLVVSGHDVSDGGLIACLAEMALAGGRGVTITVPA-------- 901 (1304)
T ss_pred cc----CCCCCCCHHHH-------HHHHHHHHHHHHcCCeEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC--------
Confidence 22 23332211111 12355677788889999999999999999999998 689999999632
Q ss_pred HHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCc
Q 046037 329 WIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEG 384 (388)
Q Consensus 329 ~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~g 384 (388)
..++.+ .+|+|..|+|+.|++++.+++.+.+++ ++.+.+||+++++..
T Consensus 902 ------~~d~~~--~LFsE~~G~VveV~~~~~~~v~~~l~~~gi~~~vIG~vt~~~~ 950 (1304)
T PHA03366 902 ------GEDPLQ--FLFSETPGVVIEVPPSHLSAVLTRLRSRNIICYPIGTVGPSGP 950 (1304)
T ss_pred ------CCCHHH--HHhCCCCeEEEEEchhHHHHHHHHHHHCCCCeEEEEEEcCCCc
Confidence 123333 369998889999999999999988876 689999999987543
No 38
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.90 E-value=3.5e-22 Score=222.39 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=180.0
Q ss_pred eEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCC---hhHHHHHHhc-CCCCC-HHHHHHHHHHHHHHHHHc
Q 046037 105 YLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGA---KPLFFLDYFA-TSHLE-VDLAEKVIKGIVDGCQQS 179 (388)
Q Consensus 105 ~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA---~P~~~ld~l~-~~~~~-~e~~~ei~~Gi~~~c~~~ 179 (388)
.++++++..+.+..+ +++..+..+|+.++++|++.|+ +|+++++.+. |.+++ ..++.+.++++.++|+++
T Consensus 594 G~a~a~Ge~p~~~~~-----DP~~ga~~AV~Ea~~Nlaaa~~~~l~pi~lt~n~~~P~~~~~~~~L~~av~ai~e~C~~L 668 (1202)
T TIGR01739 594 CVCSALGEQTYKVQA-----DPKRGATYAITEALLNLSLSPWNTLEDVIITLSVTWSPTDHVYSLLKDALRACKDFCEEL 668 (1202)
T ss_pred EEEEecCCCceEEEc-----CHHHHHHHHHHHHHHHHHhCCccccCCcEEEEEecCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 578888887765543 3568899999999999999998 9999998665 55555 679999999999999999
Q ss_pred CCeEecccceeeCC---cccCCCcceEEEEEEEEcC-CcccCCCCCCCCCEEEEeCCCc-hHHHHHHHHHHHHhccCCcc
Q 046037 180 DCVLLGGETAEMPD---FYAAGEYDLSGFAVGIVKK-DSVIDGKNIVPGDVLIGLPSSG-VHSNGFSLVRRVLAQSDLSL 254 (388)
Q Consensus 180 g~~lvGGdt~~~p~---~~~~~~~~ls~t~vG~v~~-~~~l~~~~a~~GD~Ii~~g~~G-~~~~G~sl~~~~~~~~~~~~ 254 (388)
|++|+||+++.+.+ +..+ -..+.+++++.++. .+.++....++||.|++++..+ ....| +.+.+++...+
T Consensus 669 gipiv~G~~S~s~~~~~v~~P-tptivisa~a~v~dv~k~vTp~lk~~G~~L~LIg~t~~~~LgG-S~laq~~~~~~--- 743 (1202)
T TIGR01739 669 GVSFTVTSAASSPTQDSGSAP-FMSIVFSASCPVLLSAKKITPDLKSHGSHLIWLSLHPSYTLAG-SIFEQILGLSF--- 743 (1202)
T ss_pred CCcEEeeeccccCCCCCccCC-CCeEEEEEEEEecCHHhCcCcccCCCCCEEEEEcCCCCCCchH-hHHHHhhcccc---
Confidence 99999999987543 1111 02455566666553 4677777778999999987654 33333 45555553322
Q ss_pred ccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHh
Q 046037 255 KDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQA 333 (388)
Q Consensus 255 ~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~ 333 (388)
..+|........ ...+.+.++++++.|.|+||+|+|||+.+|+||+ .+++|++|+++.
T Consensus 744 -~~~P~vd~~~lk-------~~~~~v~~li~~glI~S~HDvSdGGL~~aLaEMA~ag~~G~~Idl~~------------- 802 (1202)
T TIGR01739 744 -IRLPALSPVSLK-------KLLSALQTLVKEGVIVSGHDVSDGGLVACVAEMALSGGKGVRITLPH------------- 802 (1202)
T ss_pred -CCCCCCCHHHHH-------HHHHHHHHHHhcCCEEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC-------------
Confidence 223321111111 1344566777889999999999999999999998 589999999652
Q ss_pred CCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEc
Q 046037 334 GRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVN 381 (388)
Q Consensus 334 ~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~ 381 (388)
.+++.++ +|+|..|+|+.|++++.+++++.+++ ++++.+||+|++
T Consensus 803 -~~~p~~~--LFSEs~G~VieV~~~~~~~v~~~l~~~gi~~~vIG~vt~ 848 (1202)
T TIGR01739 803 -GTDPLEF--LCSETPGVVIEVDPSSMYAVLQFLRSEGLVFQVIGRVGE 848 (1202)
T ss_pred -CCCHHHH--HhCCCCcEEEEEchhHHHHHHHHHHHCCCCeEEEEEECC
Confidence 1345444 59888789999999999999998876 689999999986
No 39
>KOG3939 consensus Selenophosphate synthetase [Signal transduction mechanisms]
Probab=99.89 E-value=6.1e-22 Score=179.47 Aligned_cols=273 Identities=18% Similarity=0.186 Sum_probs=188.7
Q ss_pred ceEEEecC--CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhH-HHHHHhcC-CCCCHH----HHH
Q 046037 95 FGGLFPLG--DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPL-FFLDYFAT-SHLEVD----LAE 166 (388)
Q Consensus 95 Daavi~~~--~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~-~~ld~l~~-~~~~~e----~~~ 166 (388)
||+|+.+. +..||.|||.+. +..++||-.|+.+.|..+||++|||.+-. -++..|+. .+++++ .+-
T Consensus 2 d~~viplrh~gl~lvqttdffy------p~vddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~p 75 (312)
T KOG3939|consen 2 DCCVIPLRHGGLLLVQTTDFFY------PLVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIP 75 (312)
T ss_pred CceEEeeccCCeEEEEeeceee------eccCChHHhhHHHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhchhhH
Confidence 78999874 667899999874 44678999999999999999999999776 44455543 344432 566
Q ss_pred HHHHHHHHHHHHcCCeEecccceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHH--HHHHHH
Q 046037 167 KVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSN--GFSLVR 244 (388)
Q Consensus 167 ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~--G~sl~~ 244 (388)
=+++|+.+++++.|.++.||.|...| ++.+.|.+.-++...+++..+++.|||++++++++|...+ ...++.
T Consensus 76 l~~~gfkdaa~e~gt~v~ggqtv~np------w~~igGVatsVcq~ne~i~pdnAvpGdvlvLTkplg~qvAv~~h~wi~ 149 (312)
T KOG3939|consen 76 LIIQGFKDAAEEAGTPVTGGQTVINP------WCIIGGVATSVCQPNEIIMPDNAVPGDVLVLTKPLGGQVAVNAHQWID 149 (312)
T ss_pred HHHHHhHHHHHhcCCceecCeeecCc------ceeeccccccccCccceecccCCCCcceEEEeccCCceeehHHHHHHh
Confidence 78999999999999999999999876 4555566666777788899999999999999999997642 233332
Q ss_pred HHHhccCCccccCCCC-c-hhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc---CCCceEEEEcC
Q 046037 245 RVLAQSDLSLKDQLPS-E-NTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF---PKGLGAVIYED 319 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~-~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~---~s~~g~~I~~~ 319 (388)
+.-+ +-..+.-..+. + ...+.+... |...+-+....++.+..+|+++|||+.|++++...++ +..+.+.|+
T Consensus 150 ~~~e-k~~~~~l~vs~~die~ay~~a~~-~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i~-- 225 (312)
T KOG3939|consen 150 NQPE-KWNKLKLEVSDEDIEKAYEEAMK-SMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQIH-- 225 (312)
T ss_pred cCcc-eeeeeeeeecHHHHHHHHHHHHh-hhhhhchhhhhhhhhccccccccccccchhhhHHHHHHHhhccceeeec--
Confidence 1111 10111112231 1 123333332 2222333444556667899999999999999776665 456777775
Q ss_pred CCCChHHHHHHHHhCCCCHHHHH--hhcCCCeeEEEEEecccHHHHHHhcCC--C--CCeEEEEEEEcCCc
Q 046037 320 SWKVPAVFKWIQQAGRIEDSEMR--RTFNMGIGMVLVVSKETSHTILEGGCG--T--YEAYHIGEVVNGEG 384 (388)
Q Consensus 320 ~ip~~~~~~~i~~~~~~~~~e~~--~~f~~G~gll~~v~~e~~~~i~~~l~~--~--~~~~~IG~V~~~~g 384 (388)
++|+-.....+++..|-.-.-+- ..-..| |+|++.|.|.+.+++..+++ + -.+|+||.|++++.
T Consensus 226 ~LPiI~km~~vska~G~~f~l~qGts~ETsG-GlLIclP~eqaakfcaei~s~k~gegqAWIIGiVekgn~ 295 (312)
T KOG3939|consen 226 KLPIIAKMAEVSKACGNMFKLRQGTSAETSG-GLLICLPREQAAKFCAEIKSPKNGEGQAWIIGIVEKGNS 295 (312)
T ss_pred cChhhhhHHHHHHhccccceeccCCCccCCC-ceEEEccHHHHHHHHHHhcCCccCCCceEEEEEEecCCc
Confidence 78887766666655432110000 001233 59999999999999998876 2 35999999998753
No 40
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.88 E-value=1.9e-22 Score=225.63 Aligned_cols=288 Identities=15% Similarity=0.069 Sum_probs=194.9
Q ss_pred HHHHHHHHHhc---CC-----CCCCceEEEecC-------------------CceEEEEeccCCCccccccccCChhHHH
Q 046037 78 GSELVRRIAKM---AP-----GIGGFGGLFPLG-------------------DSYLVAGTDGVGTKLKLAFETGIHDTIG 130 (388)
Q Consensus 78 ~~~~v~~i~~~---~~-----~~GdDaavi~~~-------------------~~~lv~stD~~~~k~~~~~~~~~~~~iG 130 (388)
.+.+.+.|+.. .| +++|+++|++.. +..++++...- -.|..-.|+..+
T Consensus 230 ~~~l~~~i~~t~~~~~~~~~~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~~~fK~ETH-----NhPsaiePf~GA 304 (1290)
T PRK05297 230 PKSLFKMIKNTHETNPDGVLSAYKDNAAVMEGSKVGRFFPDPDTGRYGYHQEPAHILMKVETH-----NHPTAISPFPGA 304 (1290)
T ss_pred chHHHHHHHHHHHhCCCcEEEEecCCcEEEEcccccccccccccccccccccceEEEEEeccC-----CCCCccCCCCcc
Confidence 34555666432 12 578999999953 22345554432 222233466889
Q ss_pred HHHHHHHHHHHhhh--CChhHHHHHHhcCCCCC------H---------------HHHHHHHHHHHHHHHHcCCeEeccc
Q 046037 131 IDLVAMSVNDIVTS--GAKPLFFLDYFATSHLE------V---------------DLAEKVIKGIVDGCQQSDCVLLGGE 187 (388)
Q Consensus 131 ~~aVa~nvsDIaa~--GA~P~~~ld~l~~~~~~------~---------------e~~~ei~~Gi~~~c~~~g~~lvGGd 187 (388)
.-.+...++|+.+| ||+|++-++.+.+++++ + +.+.+-..|++++|+++|+|+|||+
T Consensus 305 aTG~GG~iRD~~~~G~Ga~piag~~~~~~~~l~~~~~~~~~e~~~~~P~~~~~p~~i~~~~~~Gis~~gn~~G~Pvv~G~ 384 (1290)
T PRK05297 305 ATGSGGEIRDEGATGRGSKPKAGLTGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGY 384 (1290)
T ss_pred cccCCceeccccccCCCCeeeecceeEEecCCCCCCCCCccccccCCccccCCHhHhhhhccccHHHHhhhhCCCccceE
Confidence 99999999999999 99999999877765542 2 3667777899999999999999999
Q ss_pred ceeeCCcccC--------CCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCC----chHHHHHHHHHHHHhccCCccc
Q 046037 188 TAEMPDFYAA--------GEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSS----GVHSNGFSLVRRVLAQSDLSLK 255 (388)
Q Consensus 188 t~~~p~~~~~--------~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~----G~~~~G~sl~~~~~~~~~~~~~ 255 (388)
++.+..-+.. ....+.+.++|.+++++++ +...++||.|+++|.. |+++.-+ ..........+..
T Consensus 385 Vs~yne~~~~~~~~~~~~i~P~~~vg~vG~i~~~~~~-~~~~~~Gd~IvllG~~~~rdglgGs~~--ss~~~g~~~~~~~ 461 (1290)
T PRK05297 385 FRTFEQKVNSHNEEVRGYHKPIMLAGGIGNIRADHVQ-KGEIPVGAKLIVLGGPAMRIGLGGGAA--SSMASGQSSEDLD 461 (1290)
T ss_pred EEEEeccccCccccccccccceEEEEEEEEEehhhcc-ccCCCCCCEEEEECCCCCCCCccHHHH--HHHHhcccccccc
Confidence 9765433311 0123556699999986655 4557999999999963 5554322 2221111110010
Q ss_pred -cCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHh
Q 046037 256 -DQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQA 333 (388)
Q Consensus 256 -~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~ 333 (388)
..++... ...+..+ ...++.+..+.+.+.|++|||+|.|||+.+|.||+ ++++|++|+++++|+.+.
T Consensus 462 ~~~Vq~~d-~~~ek~~---~~~i~~~~~~~~~~lI~s~hDvgaGGLa~AL~Ema~~~g~G~~idL~~vp~~~~------- 530 (1290)
T PRK05297 462 FASVQRGN-PEMERRC---QEVIDRCWQLGDDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKIPNDEP------- 530 (1290)
T ss_pred cCCCCcCC-HHHHHHH---HHHHHHHHHhcccCCeeEEecCCccHHHHHHHHHHHhcCceEEEEeCCCccccC-------
Confidence 1111110 1111100 00122222222347899999999999999999998 589999999999998643
Q ss_pred CCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 334 GRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 334 ~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
+++|.|+ +|||..+ |+++|++++.+++.+.+++ ++++++||+|++++.+.+
T Consensus 531 -~l~p~ei--l~SESQeRmlv~V~~e~~e~~~~i~~~~~l~~~vIG~vt~~~~l~v 583 (1290)
T PRK05297 531 -GMSPLEI--WCNESQERYVLAIAPEDLELFEAICERERCPFAVVGEATEERHLTL 583 (1290)
T ss_pred -CCCHHHH--HhccccceEEEEEcchhHHHHHHHHHhcCCCEEEEEEEeCCCeEEE
Confidence 6788877 4888755 9999999999999998876 689999999998665544
No 41
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.88 E-value=3.4e-21 Score=215.16 Aligned_cols=257 Identities=14% Similarity=0.052 Sum_probs=185.0
Q ss_pred CCceEEEecC---CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHh-c----CCCCC-HH
Q 046037 93 GGFGGLFPLG---DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYF-A----TSHLE-VD 163 (388)
Q Consensus 93 GdDaavi~~~---~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l-~----~~~~~-~e 163 (388)
+.||||++++ ...++++.+..+.+..+ +++..|+.||+.+++||+|+|+.|+..++++ + ++++. ++
T Consensus 692 ~aDaaV~~~~~~~~~G~ama~G~~P~~~~i-----dP~~gA~~AV~EAl~NlaaaG~~~l~~i~~s~Nwm~~~~~pge~~ 766 (1310)
T TIGR01735 692 LADVAVTAASFDTYTGEAMAIGERPPKALL-----DPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGEDA 766 (1310)
T ss_pred CcCeEEEEecCCCceEEEEEEcCCCCeecc-----CHHHHHHHHHHHHHhheeecCCcCHHHccccccchhhcCCCCCHH
Confidence 7899999984 34578888887755433 3579999999999999999999999988776 4 55553 56
Q ss_pred HHHHHHHHHHHHHHHcCCeEecccceeeC-------CcccC--CCcceEEEEEEEEcC-CcccCCCCCCCC-CE--EEE-
Q 046037 164 LAEKVIKGIVDGCQQSDCVLLGGETAEMP-------DFYAA--GEYDLSGFAVGIVKK-DSVIDGKNIVPG-DV--LIG- 229 (388)
Q Consensus 164 ~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p-------~~~~~--~~~~ls~t~vG~v~~-~~~l~~~~a~~G-D~--Ii~- 229 (388)
.+.+.++++.++|+++|+|++||+++.+. +.+.. .+.++.+|++|.++. .+.++....++| |. |++
T Consensus 767 ~l~~av~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~PpTlvisA~g~v~Dv~k~vTp~lk~~ggd~~Li~i~ 846 (1310)
T TIGR01735 767 ALYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAPVPDVRKTVTPDLKHDKGDSHLLLVD 846 (1310)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCcCccccCCCcEEEEEEEecCHhhccChhhccCCCCceEEEEE
Confidence 78999999999999999999999998641 10000 023566789999984 567777777785 54 443
Q ss_pred eCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-
Q 046037 230 LPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF- 308 (388)
Q Consensus 230 ~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~- 308 (388)
++..-... |-|.+.+.+... ...+|... .+ +.+ +.+.+.+..+++++.++||||+|+|||+.+|+||+
T Consensus 847 lg~~~~~L-GGS~laq~~~~~----g~~~P~vd-~~-~~l----k~~f~~i~~li~~glV~A~HDvSdGGL~~aLaEMAf 915 (1310)
T TIGR01735 847 LGPGKNRL-GGSALAQVFGQL----GGDCPDLD-DP-ERL----KAFFAVMQGLVAEGLLLAYHDRSDGGLVTTLLEMAF 915 (1310)
T ss_pred ccCCcccc-hHHHHHHHhccc----cCCCCCCC-cH-HHH----HHHHHHHHHHHHcCCeEEEeeCCcChHHHHHHHHHH
Confidence 44322223 334444455322 22334210 01 111 12344566677889999999999999999999998
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEE
Q 046037 309 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVV 380 (388)
Q Consensus 309 ~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~ 380 (388)
.+++|++|+++.+|..+ . ..+|++..|+|+.|++++.+++++.+++ ++++.+||.++
T Consensus 916 ag~~G~~Idl~~i~~~~-------------~--~~LFsEs~G~VieV~~e~~~~v~~~l~~~Gi~~~viGig~ 973 (1310)
T TIGR01735 916 AGHCGLDVDLDALGDSL-------------F--AVLFNEELGAVIQVAKPDLAAVLELLRAAGLTALILGIGT 973 (1310)
T ss_pred hCCCcEEEEeCCCCCcH-------------H--HHHhCCCCcEEEEEehHHHHHHHHHHHhCCCceEEEEEEE
Confidence 68999999988765432 1 2368888889999999999999988876 68888888655
No 42
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.87 E-value=6.4e-21 Score=211.64 Aligned_cols=261 Identities=15% Similarity=0.047 Sum_probs=194.3
Q ss_pred CCCceEEEecC---CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCC-------C-
Q 046037 92 IGGFGGLFPLG---DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-------L- 160 (388)
Q Consensus 92 ~GdDaavi~~~---~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~-------~- 160 (388)
++.|++|++.. ...+++++|..+....+ +++..|+.||+.++++|+| |.|..+.|++++.+ +
T Consensus 683 p~aD~aV~~~~~~~~~g~a~s~G~~p~~~~~-----dp~~ga~~AV~Ea~~Nlva--a~~~~l~di~~s~nw~~~~~~p~ 755 (1307)
T PLN03206 683 PLADVAVIAQTHTGLTGGACAIGEQPIKGLV-----DPKAMARLAVGEALTNLVW--AKVTALSDVKASGNWMYAAKLDG 755 (1307)
T ss_pred CCcceeEEEEeCCCCeEEEEEecCCCceeee-----CHHHHHHHHHHHHHhHhhc--cCCCcHHHeEEEcChhHhhcCCC
Confidence 57899999875 35689999999866543 4569999999999999999 77888888888777 4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCeEecccceeeCCcc-----cCCCcceEEEEEEEEcC-CcccCCCCCCCCCEEEE---eC
Q 046037 161 EVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFY-----AAGEYDLSGFAVGIVKK-DSVIDGKNIVPGDVLIG---LP 231 (388)
Q Consensus 161 ~~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~-----~~~~~~ls~t~vG~v~~-~~~l~~~~a~~GD~Ii~---~g 231 (388)
+++.+.+-++|+.++|+++|+|++||..+.+.... -+.+.+|.++++|.++. .+.++..-.++||.|++ +|
T Consensus 756 ~~~~l~~av~g~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P~TLvIs~~~~v~Dv~~~vtp~lK~~G~~vlL~idlG 835 (1307)
T PLN03206 756 EGADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAPGNLVISAYVTCPDITKTVTPDLKLGDDGVLLHVDLG 835 (1307)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCeecCCCCCCCCCCCcCCCCCEEEEEEEEcCCcccCcChhhcCCCCEEEEEEecC
Confidence 36788999999999999999999999998764321 11234567788998875 45666665578998888 66
Q ss_pred CCchHHHHHHHHHHHHhccCCccccCCCCc--hhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-
Q 046037 232 SSGVHSNGFSLVRRVLAQSDLSLKDQLPSE--NTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF- 308 (388)
Q Consensus 232 ~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~--~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~- 308 (388)
.......| |.+.+.+...+ ...|.. ...+ +...+.++++++++.+.|+||+|+|||+.+|+||+
T Consensus 836 ~~~~~LGG-S~~~q~~~~~g----~~~Pdv~d~~~l--------K~~f~av~~Li~~glV~A~HDvSdGGL~~ALaEMAf 902 (1307)
T PLN03206 836 KGKRRLGG-SALAQAYDQIG----DDCPDLDDVAYL--------KKAFEATQDLIAKRLISAGHDISDGGLVVTLLEMAF 902 (1307)
T ss_pred CCCcCccc-cHHHHHhCccC----CCCCCCCCHHHH--------HHHHHHHHHHHHCCCeeEEEeCCcCHHHHHHHHHHh
Confidence 54433334 34444443212 233421 1121 12456778888899999999999999999999998
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 309 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 309 ~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
.+++|++|+++..+. ++. ..+|++..++|+.|++++.+++++.+++ ++++++||++++++.+.+
T Consensus 903 ag~~G~~Idl~~~~~-------------~~~--~~LFsEs~G~VieV~~e~~~~v~~~l~~~gi~~~vIG~vt~~~~i~I 967 (1307)
T PLN03206 903 AGNCGINVDLPSSGH-------------SAF--ETLFAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQVTASPLIEV 967 (1307)
T ss_pred hcCCcEEEEeCCccc-------------hHH--HHHhCCCccEEEEEehhHHHHHHHHHHHCCCCeEEEEEECCCCeEEE
Confidence 589999999764221 122 2368888889999999999999998876 689999999987665544
No 43
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.86 E-value=1.5e-20 Score=210.53 Aligned_cols=263 Identities=14% Similarity=0.082 Sum_probs=187.8
Q ss_pred CCceEEEecC---CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChh---HHHHHHh--cCCCCC-HH
Q 046037 93 GGFGGLFPLG---DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKP---LFFLDYF--ATSHLE-VD 163 (388)
Q Consensus 93 GdDaavi~~~---~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P---~~~ld~l--~~~~~~-~e 163 (388)
+.|++|++++ ...++++.+..+.+..+ +++..|+.||+.+++||+|+|+.+ +.++..+ .++++. ..
T Consensus 672 ~~DaaV~~~~~~~~~g~ama~G~~P~~~~~-----dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N~~~~~~~p~~~a 746 (1290)
T PRK05297 672 VADCAVTAASYDGYAGEAMAMGERTPVALL-----DAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGEDA 746 (1290)
T ss_pred CCCeEEEEecCCCCeEEEEEEcCCCCeecc-----CHHHHHHHHHHHHHhhheecCCccccceEEEEEEeccCCCCchHH
Confidence 6799999973 45688899988765443 357999999999999999999876 3333222 236664 46
Q ss_pred HHHHHHHHHH-HHHHHcCCeEecccceeeC-CcccC--------CCcceEEEEEEEEcC-CcccCCCCC-CCCCEEEEeC
Q 046037 164 LAEKVIKGIV-DGCQQSDCVLLGGETAEMP-DFYAA--------GEYDLSGFAVGIVKK-DSVIDGKNI-VPGDVLIGLP 231 (388)
Q Consensus 164 ~~~ei~~Gi~-~~c~~~g~~lvGGdt~~~p-~~~~~--------~~~~ls~t~vG~v~~-~~~l~~~~a-~~GD~Ii~~g 231 (388)
.+.+.++++. ++|+++|+|++||+.+.+. .-|++ -+.++.++++|.+++ .+.++.... ++|+.|++++
T Consensus 747 ~L~~av~a~~~e~c~~LgipiigGkdSmS~~t~yne~~~~~~v~iPpTlvisa~g~v~dv~~~vTp~lkk~~g~~l~lI~ 826 (1290)
T PRK05297 747 RLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQLRTDKDTALLLID 826 (1290)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccchhcCCccccccCCCCCcceeCCccEEEEEEEecCcccccCcccccCCCCEEEEEE
Confidence 8999999999 9999999999999976521 11210 123566788999986 567777664 6788998873
Q ss_pred CC-chHHHHHHHHHHHHhccCCccccCCCC--chhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc
Q 046037 232 SS-GVHSNGFSLVRRVLAQSDLSLKDQLPS--ENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF 308 (388)
Q Consensus 232 ~~-G~~~~G~sl~~~~~~~~~~~~~~~~~~--~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~ 308 (388)
-. +....|-|.+.+.+... ...+|. +...+. .+.+.+..+++++.++||||+|+|||+.+|.||+
T Consensus 827 lg~~~~~lGGS~laq~~~~~----g~~~P~v~d~~~lk--------~~~~~v~~li~~glv~S~HDvSdGGL~~aLaEMA 894 (1290)
T PRK05297 827 LGRGKNRLGGSALAQVYNQL----GDKAPDVDDAEDLK--------GFFNAIQALVAEGLLLAYHDRSDGGLLTTLAEMA 894 (1290)
T ss_pred CCCCcccchHhHHHHHhhhh----cCCCCCCCCHHHHH--------HHHHHHHHHHHcCCEEEEEeCCcCHHHHHHHHHH
Confidence 21 22222334555544322 223442 111221 2345566777889999999999999999999998
Q ss_pred -CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CC--CeEEEEEEEcCCc
Q 046037 309 -PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TY--EAYHIGEVVNGEG 384 (388)
Q Consensus 309 -~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~--~~~~IG~V~~~~g 384 (388)
.+++|++|+++++|..+ . ..+|++..|+++.|++++.+++++.+++ ++ ++.+||+|++++.
T Consensus 895 fa~~~G~~Idl~~i~~~~-------------~--~~LFsE~~G~vveV~~~~~~~v~~~l~~~gi~~~~~~IG~vt~~~~ 959 (1290)
T PRK05297 895 FAGHCGLDIDLDALGDDA-------------L--AALFNEELGAVIQVRAADRDAVEAILAEHGLSDCVHVIGKPNAGDR 959 (1290)
T ss_pred hhCCCcEEEEeCCCCchH-------------H--HHHhCCCceEEEEEehHHHHHHHHHHHHcCCCCCCeEEEEECCCce
Confidence 58999999988765211 1 2359998889999999999989888876 57 8999999987665
Q ss_pred eEE
Q 046037 385 VSY 387 (388)
Q Consensus 385 v~~ 387 (388)
+.+
T Consensus 960 l~I 962 (1290)
T PRK05297 960 IVI 962 (1290)
T ss_pred EEE
Confidence 544
No 44
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=99.84 E-value=1.3e-21 Score=158.31 Aligned_cols=94 Identities=29% Similarity=0.452 Sum_probs=86.1
Q ss_pred CCceEEEecC-CceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCC-CCHHHHHHHHH
Q 046037 93 GGFGGLFPLG-DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-LEVDLAEKVIK 170 (388)
Q Consensus 93 GdDaavi~~~-~~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~-~~~e~~~ei~~ 170 (388)
||||||++++ ++.+++++|++.++.|+. .-+|+++||++|++|+|||++|||+|+++++++..++ .++++++++++
T Consensus 1 GdDaavi~~~~~~~~~~~~d~~~~~~~~~--~~~p~~~g~~av~~~~sDl~a~Ga~P~~~~~~l~~~~~~~~~~l~~~~~ 78 (96)
T PF00586_consen 1 GDDAAVIRIPDGKRLVVSTDGFGTSVHFA--FMDPYDGGWKAVAEALSDLAAMGAKPLAILDSLGLPNPESPEELKEIVK 78 (96)
T ss_dssp TSSSEEEEETSTEEEEEEEEEEETHHHHH--TCTHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEESTTSBHHHHHHHHH
T ss_pred CCceEEEEcCCCCeEEEEEEeccCccccc--ccCHHHHHHHHHHHHHHHHHhcCCeeeEEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999998 889999999999999887 3468899999999999999999999999999887554 57899999999
Q ss_pred HHHHHHHHcCCeEecccc
Q 046037 171 GIVDGCQQSDCVLLGGET 188 (388)
Q Consensus 171 Gi~~~c~~~g~~lvGGdt 188 (388)
|+.++|+++|++++||||
T Consensus 79 Gi~~~~~~~g~~ivGG~T 96 (96)
T PF00586_consen 79 GIAEACREFGIPIVGGDT 96 (96)
T ss_dssp HHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHhCCcEeCcCC
Confidence 999999999999999998
No 45
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=99.80 E-value=4.9e-19 Score=154.57 Aligned_cols=146 Identities=24% Similarity=0.356 Sum_probs=106.5
Q ss_pred CCCCEEEEeCCCchHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHh-CCccEEecCCCChh
Q 046037 222 VPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISE-GGVKGIAHITGGGF 300 (388)
Q Consensus 222 ~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~-~~v~a~~DIS~GGL 300 (388)
||||.|+++|+.|.+++++.+.++...... .+. +..+....|.+ .+....+... +.+++|||||+|||
T Consensus 1 k~GD~i~~~g~~G~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~--~~~~~~~~~~~~~i~a~~DvSdGGL 69 (153)
T PF02769_consen 1 KPGDLIIVTGSLGLGGSGLLAARKGGESGG------LPD---PLVDAELEPPL--LYAVRALAALKGLIHAAHDVSDGGL 69 (153)
T ss_dssp STTEEEEEECSSSHCHHHHHHHHHTHHHTT------HHH---CHHHHHHHHHH--HHHHHHHHHHHTTEEEEEEESTTHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHhCccccc------cch---hhhhHHhhHHH--HHHHHHhhhhhcceEEEEecCCchH
Confidence 799999999999999998766554322211 000 12333333222 3334444443 79999999999999
Q ss_pred hhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CC-CeEEEE
Q 046037 301 TDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TY-EAYHIG 377 (388)
Q Consensus 301 ~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~-~~~~IG 377 (388)
+.+|++|+ .|++|++|+.+.+|+.+... ++.+++..+++| .+++++++++.+++++.+++ ++ .+++||
T Consensus 70 ~~~l~em~~~s~~g~~i~~~~~p~~~~~~--------~~~~~l~~~~~g-~~l~~v~~~~~~~~~~~~~~~g~~~~~~IG 140 (153)
T PF02769_consen 70 AGALAEMAEASGVGAEIDLDKIPLSDELQ--------SPLEMLFSESEG-RLLVAVPPEDAEEFLAALKKAGIPNATVIG 140 (153)
T ss_dssp HHHHHHHHHCTTEEEEEEGGGSHHHHHHH--------HHHHHHHHSSST-EEEEEEEGGGHHHHHHHHHHTTCTTEEEEE
T ss_pred HHHHHHHHHhCCcceEEccccchhhhhhh--------hhhhhhccCCCC-CEEEEEcHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999 58999999998766655433 456677677777 48888888888999998876 57 699999
Q ss_pred EEEcCCceEE
Q 046037 378 EVVNGEGVSY 387 (388)
Q Consensus 378 ~V~~~~gv~~ 387 (388)
+|++++++.+
T Consensus 141 ~V~~~~~~~v 150 (153)
T PF02769_consen 141 EVTEGPGLTV 150 (153)
T ss_dssp EEESSSSEEE
T ss_pred EEEcCCCEEE
Confidence 9999987654
No 46
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.73 E-value=3.7e-18 Score=189.83 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=175.0
Q ss_pred ChhHHHHHHHHHHHHHHhhh--CChhHHHHHHhcCCCCC----------------------HHHHHHHHHHHHHHHHHcC
Q 046037 125 IHDTIGIDLVAMSVNDIVTS--GAKPLFFLDYFATSHLE----------------------VDLAEKVIKGIVDGCQQSD 180 (388)
Q Consensus 125 ~~~~iG~~aVa~nvsDIaa~--GA~P~~~ld~l~~~~~~----------------------~e~~~ei~~Gi~~~c~~~g 180 (388)
.|+..+.-.+...++|+.+| ||+|++.++.+.+++++ ...+.+.+.|+++.-+++|
T Consensus 302 ePf~GAATGvGG~IRD~~a~GrGa~PiA~l~~~~~g~l~~~g~~~p~e~~~~~~p~~l~~~~~I~~~~~~G~s~YGN~~G 381 (1307)
T PLN03206 302 APYPGAETGAGGRIRDTHATGRGSFVVAGTAGYCVGNLRIEGSYAPWEDSSFVYPSNLASPLQILIDASNGASDYGNKFG 381 (1307)
T ss_pred CCCCcccccCCceeecccccCCCceeeecceeEEecCCCCCCCcCccccccccCcccCCCHhHHhhccCCccccCCcccC
Confidence 46688999999999999999 99999999988766542 1355667778888888999
Q ss_pred CeEecccce-eeC--------CcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCC----CchHHHHHHHHHHHH
Q 046037 181 CVLLGGETA-EMP--------DFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVL 247 (388)
Q Consensus 181 ~~lvGGdt~-~~p--------~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~----~G~~~~G~sl~~~~~ 247 (388)
+|.++|.+. ..+ ++++ ++ +.+.++|.++++++.+ ...++||.|+++|. .|+|++.++-. .+
T Consensus 382 ~P~v~G~~~~F~~~~~~g~~~~~~k--Pi-m~ag~vG~~~~~~v~k-~~~~~G~~vv~lGG~tgRdGigGat~SS~--~~ 455 (1307)
T PLN03206 382 EPLIQGYTRTFGMRLPNGERREWLK--PI-MFSGGIGQIDHTHLTK-GEPDIGMLVVKIGGPAYRIGMGGGAASSM--VS 455 (1307)
T ss_pred CcccCcEEEEeccccccccccccCC--Cc-eEEEEEEEEcHHHccc-CCCCCCCEEEEECCCcccccccchhhhhh--hh
Confidence 999999985 222 2223 23 3456899999876654 45999999999875 56776544432 22
Q ss_pred hccCCccccCCCCchhHHHHHhhccc-hhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhcCCCceEEEEcCCCCChHH
Q 046037 248 AQSDLSLKDQLPSENTTLGEALMAPT-VIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAV 326 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~e~ll~p~-~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~ 326 (388)
.... ....++ ..+.++.++... ...++.++++.+.+.|.+|||...|||..++.||+.. .|++|+++++|+.+
T Consensus 456 ~~~s--~~~d~~--aVQ~GnP~~Ekklq~vi~ac~e~~~~~~I~~i~D~GAGGls~a~~Ela~~-~G~~i~Ld~Vp~~e- 529 (1307)
T PLN03206 456 GQND--AELDFN--AVQRGDAEMSQKLYRVVRACVEMGEDNPIVSIHDQGAGGNCNVVKEIIYP-KGAEIDIRAVVVGD- 529 (1307)
T ss_pred CCcc--ccccCC--ccccCCHHHHHHHHHHHHHHHHhhcCCCEEEEEecCCchHHHhHHHHhhc-CceEEEhhhCcCCC-
Confidence 2111 111122 122222222100 0124555666666889999999999999999999854 89999999999764
Q ss_pred HHHHHHhCCCCHHHHHhhcCCCe-eEEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 327 FKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 327 ~~~i~~~~~~~~~e~~~~f~~G~-gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
-+++|.|++ .||.. +|+++|+|++.+++++.+++ ++++++||+||++..+.+
T Consensus 530 -------~gmsp~EI~--~SESQERm~l~V~p~~~~~f~~i~~re~~~~~vVG~vT~~~rl~v 583 (1307)
T PLN03206 530 -------HTLSVLEIW--GAEYQEQDALLIKPESRDLLQSICDRERCSMAVIGTIDGSGRVVL 583 (1307)
T ss_pred -------CCCCHHHHH--HhHHhhhheeeECcccHHHHHHHHHHcCCCeEEEEEEecCCeEEE
Confidence 389999986 45554 49999999999999999977 599999999998876654
No 47
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.72 E-value=2.6e-16 Score=173.96 Aligned_cols=228 Identities=14% Similarity=0.111 Sum_probs=167.5
Q ss_pred CceEEEecC----C--ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCC-----CC-
Q 046037 94 GFGGLFPLG----D--SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-----LE- 161 (388)
Q Consensus 94 dDaavi~~~----~--~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~-----~~- 161 (388)
.||+|++++ + ..++++.|..+....+ +|+..++.||+.++++|+|+|++|..+ +|++++ ++
T Consensus 677 ~DaaV~~~~~~~g~t~~g~ams~g~nP~~~~~-----dPy~ga~~AV~EA~rNlva~G~~~~~i--~Lnf~~~F~k~p~~ 749 (1239)
T TIGR01857 677 TEASVAKLPVLGGETHTASAIAWGFNPYIAEW-----SPYHGAAYAVIESLAKLVAAGADYKKA--RLSFQEYFEKLDKD 749 (1239)
T ss_pred cceEEEEeeccCCCCCeEEEEEecCCCceecc-----CHHHHHHHHHHHHHhhhheeCCcHHHE--EEecccccccCCCC
Confidence 699999965 2 4689999999865543 466999999999999999999999877 676544 22
Q ss_pred H---HHHHHHHHHHHHHHHHcCCeEecccceeeCCccc-CCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHH
Q 046037 162 V---DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHS 237 (388)
Q Consensus 162 ~---e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~-~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~ 237 (388)
+ .++.+-+.|+.++|+++|+|++||..+.+...-. .-+.++..+++|+.+-.+.++..-.++||.|++++....+
T Consensus 750 p~~w~~~~~al~ga~~a~~~lgipvigGKdSmsn~~~~v~iPPTlvi~avgv~Dv~~~vt~~~K~~G~~i~lig~~~~~- 828 (1239)
T TIGR01857 750 AERWGKPFAALLGAIKAQIDLGLPAIGGKDSMSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQALE- 828 (1239)
T ss_pred hhHHhHHHHHHHHHHHHHHHhCCCCCcceecCccccCCeeeCCccEEEEEeccCHhhccChhhccCCCEEEEEcCCccc-
Confidence 2 3566779999999999999999999987642210 0122456778897755667777666789999999854221
Q ss_pred HHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEE
Q 046037 238 NGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVI 316 (388)
Q Consensus 238 ~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I 316 (388)
.+ .+. ...+. ...+.+.++++++.+.|+||+|+|||+.+|.||+ ..++|++|
T Consensus 829 ------------~g------~~d-~~~~k--------~~~~~v~~li~~g~v~s~hDvS~GGL~vaLaEMaf~g~~G~~i 881 (1239)
T TIGR01857 829 ------------DG------TID-FDLLK--------ENFAQIEELIADHKVVSASAVKYGGVAESLAKMTFGNRIGAEL 881 (1239)
T ss_pred ------------CC------CCC-HHHHH--------HHHHHHHHHHHCCCEEEEEeCCcChHHHHHHHHHhcCCceEEE
Confidence 01 111 11111 1345677888889999999999999999999998 67899999
Q ss_pred EcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCee-EEEEEecccHHHHHHhcCCCCCeEEEEEEEcCCce
Q 046037 317 YEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGCGTYEAYHIGEVVNGEGV 385 (388)
Q Consensus 317 ~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~g-ll~~v~~e~~~~i~~~l~~~~~~~~IG~V~~~~gv 385 (388)
+++.. ..+|++..| +|+.++++. .+.++.+||+++++..+
T Consensus 882 ~l~~~--------------------~~LFsE~~gr~vvev~~~~---------~~~~~~~IG~v~~~~~l 922 (1239)
T TIGR01857 882 NNPEL--------------------EDLFTAQYGSFIFESPEEL---------SIANVEKIGQTTADFVL 922 (1239)
T ss_pred ecCcH--------------------HHhhCCCCceEEEEEChhh---------cCCcceEEEEECCccEE
Confidence 86420 126999888 888888762 14678999999865333
No 48
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.67 E-value=1.1e-15 Score=159.35 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=138.8
Q ss_pred CCCCceEEEecCC-ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCC--HHHHHH
Q 046037 91 GIGGFGGLFPLGD-SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE--VDLAEK 167 (388)
Q Consensus 91 ~~GdDaavi~~~~-~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~--~e~~~e 167 (388)
.||.|++|+++++ ..+++++|+++.... -+|+..+..+|+.++++++|+||+|++++|+++|++|+ +.++.+
T Consensus 382 ~P~~~a~v~~~~~~~~~a~~~~~np~~~~-----~~p~~g~~~av~ea~rn~~~~Ga~p~~i~~~~nf~~p~~~~~~~~~ 456 (601)
T PRK14090 382 PPGFGAAVMRIKRDGGYSLVTHSRADLAL-----QDTYWGTFIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGLSA 456 (601)
T ss_pred cCCCCcEEEEEcCCCeEEEEcCCCCceec-----cCHHHHHHHHHHHHHhhHhhhCCcHHHceechhcCCCCCCHHHHHH
Confidence 5778899999863 378999999875433 34679999999999999999999999999999998874 558999
Q ss_pred HHHHHHHHHHHcCCeEecccceeeCCccc-CCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHH
Q 046037 168 VIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 246 (388)
Q Consensus 168 i~~Gi~~~c~~~g~~lvGGdt~~~p~~~~-~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~ 246 (388)
.++|+.++|+.+++|+|||+.+.+..+.. .-+.++.++++|+++..+.++. +.|| |+++|.... .+
T Consensus 457 ~~~~~~~a~~~~~~p~i~G~~S~~n~~~~~~i~PT~~~~~vg~~~~~~~~~~---~~~~-i~lig~~~~-----~~---- 523 (601)
T PRK14090 457 MMTALKDACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKP---KPSK-VFAVGWNDF-----EL---- 523 (601)
T ss_pred HHHHHHHHHHHhCCCeecceeccccCCCCccCCCCceEEEEEEeccccccCC---CCCe-EEEECCCCC-----CH----
Confidence 99999999999999999999997754311 1123566789999987566554 6788 888876211 00
Q ss_pred HhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhC-CccEEecCCCChhhhhhhhhcCCCceEEEEcCCCCChH
Q 046037 247 LAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEG-GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPA 325 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~-~v~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~ 325 (388)
.+. +...+.+.++++++ .++++||+|+|-...++ .++|+.|+++++...|
T Consensus 524 -------------------~~~-----~~~~~~~~~~i~~~~~~~~~hd~s~g~~~~~~-----~~~~~~~~~~~~~~~~ 574 (601)
T PRK14090 524 -------------------ERE-----KELWREIRKLSEEGAFILSSSQLLTRTHVETF-----REYGLKIKLKLLEVRP 574 (601)
T ss_pred -------------------HHH-----HHHHHHHHHHHhCCCeEEEEEEcccCchhhhh-----ccccccccchhhccCc
Confidence 000 11344566778888 78999999999323222 4678877766654433
No 49
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.66 E-value=1.3e-16 Score=176.30 Aligned_cols=237 Identities=15% Similarity=0.080 Sum_probs=170.1
Q ss_pred CChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcC---CCC-------------CHHHHHHHHHHHHHHHHHcCCeEeccc
Q 046037 124 GIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFAT---SHL-------------EVDLAEKVIKGIVDGCQQSDCVLLGGE 187 (388)
Q Consensus 124 ~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~---~~~-------------~~e~~~ei~~Gi~~~c~~~g~~lvGGd 187 (388)
-.|+..+.-.+...++|+++||+. .++.|.+ +++ +...+.+.+.|+++.-+++|+|-++|+
T Consensus 327 IePf~GAATGvGG~IRD~lsg~a~---~~~~Lr~~g~g~p~~~~~~~~~gklp~r~I~~gv~~G~s~YGN~~GvpTg~g~ 403 (1239)
T TIGR01857 327 IEPFGGAATCIGGAIRDPLSGRSY---VYQAMRVTGAGDPTVPISETLKGKLPQRKITTTAAHGYSSYGNQIGLATGQVS 403 (1239)
T ss_pred cCCCCcccccCCchhcccccccee---eecccccCCCCCCCccccccccCCCchhhhhhhcccceeccCcccCCceeeEE
Confidence 346688999999999999999986 3344322 222 334677788888888889999999999
Q ss_pred ceeeCCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCC----CchHHHHHHHHHHHHhccCCccccCCCCchh
Q 046037 188 TAEMPDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLAQSDLSLKDQLPSENT 263 (388)
Q Consensus 188 t~~~p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~----~G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~ 263 (388)
+...+++.. +++ +.+.++|.++++++. +...++||.|+++|. .|+|++.++- +.+.... .....+ ..
T Consensus 404 ~~f~~~Y~~-~~l-v~~~~vG~~~~~~v~-k~~~~~Gd~iv~~Gg~tGRdGigGat~SS--~~~~~~s--~~~~~~--aV 474 (1239)
T TIGR01857 404 EIYHPGYVA-KRM-EVGAVVAATPKENVV-REKPEPGDVIILLGGKTGRDGIGGATGSS--KEHTVES--LELCGA--EV 474 (1239)
T ss_pred EEEecCCCC-Cce-EEEEEEEeecHHHhc-cCCCCCCCEEEEECCCCCcCcccchhhhh--hhccccc--cccccC--cc
Confidence 999987544 343 567789999987655 445999999999875 5677654332 2222211 011111 11
Q ss_pred HHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHh
Q 046037 264 TLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRR 343 (388)
Q Consensus 264 ~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~ 343 (388)
+.++... ++...+.++++.+++.|++|||++.|||..+|.||+. |++|+++++|... -+++|.|+
T Consensus 475 Q~Gdp~~--Ekkl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~---G~~IdL~~vp~~~--------~gl~p~Ei-- 539 (1239)
T TIGR01857 475 QKGNAPE--ERKIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD---GLEIDLNKVPKKY--------EGLNGTEL-- 539 (1239)
T ss_pred CcCCHHH--HHHHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhC---CEEEEcCCCcccc--------CCCCHHHH--
Confidence 2222221 1223456666777789999999999999999999974 9999999988643 25778776
Q ss_pred hcCCCee-EEEEEecccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 344 TFNMGIG-MVLVVSKETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 344 ~f~~G~g-ll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
+|||..+ |+++|+|++.+++.+.+++ ++++++||+|++++.+.+
T Consensus 540 LfSESQeRmlv~V~pe~~e~f~~i~~~~~l~~~vIG~vt~~~~l~v 585 (1239)
T TIGR01857 540 AISESQERMAVVVSPEDVDAFLAYCNEENLEATVVATVTEKPRLVM 585 (1239)
T ss_pred hhCCcCCeEEEEEChhhHHHHHHHHHHCCCCEEEEEEECCCCeEEE
Confidence 5888865 9999999999999998876 689999999997655543
No 50
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=99.11 E-value=4.5e-11 Score=95.98 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=35.7
Q ss_pred cceEEE-EeeCCCHHHHHHHhhc--cCccCCCCccchhhhhhhh
Q 046037 12 SSRFFA-SKLNPTNNVLLNCAYE--CKLPFLSMASRRVSVNRCV 52 (388)
Q Consensus 12 ~~~~~~-~~~g~~~~~a~~~ay~--~~i~~~g~~~R~Dig~~~~ 52 (388)
.+||+. ++.|+|+++|+++||+ ++|+|+|+|||+|||+++|
T Consensus 50 GGRvl~v~~~g~tl~eA~~~ay~~i~~I~~~g~~yR~DIG~~al 93 (93)
T PF02843_consen 50 GGRVLTVVALGDTLEEAREKAYEAIEKIDFPGMFYRKDIGHRAL 93 (93)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHTTSB-TTEE--STTTHHHH
T ss_pred CCeEEEEEEEcCCHHHHHHHHHHHHhccCCCCCEEcCccChhhC
Confidence 579987 8999999999999999 9999999999999999875
No 51
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=98.92 E-value=5.3e-08 Score=102.54 Aligned_cols=230 Identities=17% Similarity=0.104 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHHHHHhhhCChhHHHH----HHhcCCCCC--HHHHHHHHHHHHHHHHHcCCeEecccceeeCCcccC-
Q 046037 125 IHDTIGIDLVAMSVNDIVTSGAKPLFFL----DYFATSHLE--VDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAA- 197 (388)
Q Consensus 125 ~~~~iG~~aVa~nvsDIaa~GA~P~~~l----d~l~~~~~~--~e~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~- 197 (388)
++...++.+|+.++.+|.+.--+-+.=+ +.+...+.+ -..+-+-++.+..+..++||+|=||.-+.+-.+.-.
T Consensus 725 da~a~ARm~VaE~l~NLv~a~i~sL~dvK~SgNWM~aak~~GEGarlydAv~aL~~~L~eLgiAIdgGKDSlSMa~k~~g 804 (1320)
T KOG1907|consen 725 DAAASARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQALCLGLCELGIAIDGGKDSLSMAMKWDG 804 (1320)
T ss_pred CHHHHhHHHHHHHHHHhHhhcccchhheeeccceeecccCCCcchHHHHHHHHHHHHHHHhceeecCCccchhhheeeCC
Confidence 4568899999999999998655533211 111122222 247778888888888899999999987644111111
Q ss_pred ----CCcceEEEEEEEEcC-CcccCCC--CCCCCCE---EEEeCCCchHHHHHHHHHHHHhccCCccccCCCCc--hhHH
Q 046037 198 ----GEYDLSGFAVGIVKK-DSVIDGK--NIVPGDV---LIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSE--NTTL 265 (388)
Q Consensus 198 ----~~~~ls~t~vG~v~~-~~~l~~~--~a~~GD~---Ii~~g~~G~~~~G~sl~~~~~~~~~~~~~~~~~~~--~~~~ 265 (388)
.+.++.+++.--++. .+.+++. ...+|+. |.+--..+....|-|.+.+.+...|. ..|.. ...+
T Consensus 805 e~VkaPgtLvIsayapc~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~QiG~----d~Pdl~~~~~l 880 (1320)
T KOG1907|consen 805 EVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQIGD----DCPDLDNFDEL 880 (1320)
T ss_pred eEEecCceEEEEeeccCCCcceeecccccCCCCCCceEEEEEEccccccccchHHHHHHHHHhCC----CCCCccchHHH
Confidence 122344445444443 2334442 2245555 22222233333344444444443332 22221 1122
Q ss_pred HHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhhhhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhh
Q 046037 266 GEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRT 344 (388)
Q Consensus 266 ~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~ 344 (388)
.. +...+..+.+++.|.|-||+|||||+-.+.||+ ..++|++||++..- . ++.+.+. +
T Consensus 881 k~--------~f~~vqqL~~~~ii~AgHD~SDGGLlvt~lEMAfag~~gi~idl~~~~-~----------~~~~~~~--L 939 (1320)
T KOG1907|consen 881 KK--------FFSVVQQLLNEGIILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPN-Q----------NIKLFDI--L 939 (1320)
T ss_pred HH--------HHHHHHHHHhcCceeecccccCCchhHHHHHHHhhcccceEEecCCcc-c----------cccHHHH--H
Confidence 22 344566777788999999999999999999998 68999999987521 1 2333332 5
Q ss_pred cCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEE
Q 046037 345 FNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEV 379 (388)
Q Consensus 345 f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V 379 (388)
|++..|.++-|+..+.+++++.+.+ ++++..||++
T Consensus 940 F~EElG~v~evs~~dl~~v~~~~~~~gv~~~~ig~~ 975 (1320)
T KOG1907|consen 940 FAEELGAVLEVSDTDLEKVLEIFSEAGVKCEYIGKA 975 (1320)
T ss_pred HHHhhCeEEEeccccHHHHHHHHHhcCCcceeeeee
Confidence 8888889999999999999999987 6999999987
No 52
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.43 E-value=1.7e-07 Score=95.74 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=40.2
Q ss_pred cceEEE-EeeCCCHHHHHHHhhc--cCccCCCCccchhhhhhhhhhc
Q 046037 12 SSRFFA-SKLNPTNNVLLNCAYE--CKLPFLSMASRRVSVNRCVLSM 55 (388)
Q Consensus 12 ~~~~~~-~~~g~~~~~a~~~ay~--~~i~~~g~~~R~Dig~~~~~~~ 55 (388)
..||+. |+.|+|+++|+++||+ ++|+|+|+|||+|||++++..+
T Consensus 382 ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~DIg~~~~~~~ 428 (434)
T PLN02257 382 GGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDIGWRAVARL 428 (434)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhHHHHHhh
Confidence 479987 8999999999999999 9999999999999999887544
No 53
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.35 E-value=3.4e-06 Score=95.40 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=133.6
Q ss_pred hCChhHHHHH--HhcCCCC-----C--HHHH-HHHHHHHHHHHHHcCCeEecccceeeCC-----cccCCCcceEEEEEE
Q 046037 144 SGAKPLFFLD--YFATSHL-----E--VDLA-EKVIKGIVDGCQQSDCVLLGGETAEMPD-----FYAAGEYDLSGFAVG 208 (388)
Q Consensus 144 ~GA~P~~~ld--~l~~~~~-----~--~e~~-~ei~~Gi~~~c~~~g~~lvGGdt~~~p~-----~~~~~~~~ls~t~vG 208 (388)
.|..|.+... |...+.. . ...+ ...++.-.+..+++|+|+++|=+-..+. .+...++.+++ .+|
T Consensus 191 p~~~~~a~~~G~y~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~P~i~Gf~r~~~~~~~~~~~~~kpim~~G-~lg 269 (1202)
T TIGR01739 191 PGVMPVASQLGLYYQTPALTGEQDLPLSRKMSTAMLQAQASALRASGVPTCGGFIRLISKNKLSLPTPYTPTYNTS-ILD 269 (1202)
T ss_pred ccCchhhhccceEEecCCCCCcccchhHHHHHHHHHHHHHHHHHhcCCCccceEEEEecccccccccCCCCeEEcc-ccC
Confidence 5788887663 3332221 1 1233 2566677788899999999999876542 11112344433 577
Q ss_pred EEcCCcccCCCCCCCCCEEEEeCCC----chHHHHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHH
Q 046037 209 IVKKDSVIDGKNIVPGDVLIGLPSS----GVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDII 284 (388)
Q Consensus 209 ~v~~~~~l~~~~a~~GD~Ii~~g~~----G~~~~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~ 284 (388)
.++.. -+.....++||.|+++|.. |.|+..++- . .-|.....+.+. .+.+.+..
T Consensus 270 ~i~~~-~~~k~~~~~G~~iV~lGg~~~~~G~~G~~~s~-------~------~s~~~~~~iq~~--------i~~~~~~~ 327 (1202)
T TIGR01739 270 RLCHV-TINTADEPPGQDIVALGQFEPSLLPDTPPLLY-------A------DSPLDVNKILTA--------LALLTDDV 327 (1202)
T ss_pred CCChh-hcccccCCCCCEEEEECCCCCCCCCCCCcccc-------C------CCHHHHHHHHHH--------HHHHHHhc
Confidence 77754 3556678999999999863 455432210 0 001111222222 12222222
Q ss_pred HhC-CccEEecCCCChhhhhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCCH------HHHH--hhcCCCee-EEEE
Q 046037 285 SEG-GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIED------SEMR--RTFNMGIG-MVLV 354 (388)
Q Consensus 285 ~~~-~v~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~------~e~~--~~f~~G~g-ll~~ 354 (388)
++. ...++||...||+..+|.||+. .+|++|+++++|.+. ...+ -..++ ++|. ..+|+-.+ ++++
T Consensus 328 ~~~~i~~sI~D~Gagg~sn~l~El~~-~~G~~i~L~~lP~~~-~s~L---~~~~~~~~e~~e~~v~~~~~N~~~~~~~La 402 (1202)
T TIGR01739 328 KTPCIVGSIRPLGPCSVKEHLTALLP-PCGAELDLSNLPDEV-VAAL---ARSSPANRVENEKMVKQYFLNVVCSVVFLT 402 (1202)
T ss_pred cCCeeEEEecCCCCchHHHHHHHHhc-cCceEEEhHhCCchh-hccc---cCCChhhhHHHHHHhhhhcccccceeEEEE
Confidence 222 2389999999999999999986 789999999999542 1111 11222 2332 13566655 7888
Q ss_pred Eec----------ccHHHHHHhcCC-CCCeEEEEEEEcCCceEE
Q 046037 355 VSK----------ETSHTILEGGCG-TYEAYHIGEVVNGEGVSY 387 (388)
Q Consensus 355 v~~----------e~~~~i~~~l~~-~~~~~~IG~V~~~~gv~~ 387 (388)
|++ +..+.+.+.++. ++++++||++|+..++.+
T Consensus 403 V~~~~~~~~~~~~~~l~~~~~ic~re~cp~~vlG~~t~~~~l~v 446 (1202)
T TIGR01739 403 VKNTPHNTGTEGVTPLERLKTACRMFGCPVKVLGKLVPLPGLHI 446 (1202)
T ss_pred ECCcccccccccchHHHHHHHHHHHCCCCEEEEEEEeCCCcEEE
Confidence 888 677777777765 699999999999888765
No 54
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.24 E-value=5.5e-07 Score=93.08 Aligned_cols=44 Identities=7% Similarity=-0.093 Sum_probs=39.7
Q ss_pred cceEEE-EeeCCCHHHHHHHhhc--cCc-cCCCCccchhhhhhhhhhc
Q 046037 12 SSRFFA-SKLNPTNNVLLNCAYE--CKL-PFLSMASRRVSVNRCVLSM 55 (388)
Q Consensus 12 ~~~~~~-~~~g~~~~~a~~~ay~--~~i-~~~g~~~R~Dig~~~~~~~ 55 (388)
..||+. |+.|+|+++|+++||+ ++| +|+|+|||+|||++.+-+.
T Consensus 402 ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~~yR~DIg~~~~~~~ 449 (486)
T PRK05784 402 GSRALEIVAIGKDFEEAYEKLERCISYVSSDTKLIYRTDIGSPEYMEY 449 (486)
T ss_pred CCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCCCcccccCchHHHHH
Confidence 468887 8999999999999999 999 9999999999999877543
No 55
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.74 E-value=1.9e-05 Score=80.71 Aligned_cols=43 Identities=14% Similarity=-0.099 Sum_probs=38.6
Q ss_pred cceEEE-EeeCCCHHHHHHHhhc--cCccCCCCccchhhhhhhhhhc
Q 046037 12 SSRFFA-SKLNPTNNVLLNCAYE--CKLPFLSMASRRVSVNRCVLSM 55 (388)
Q Consensus 12 ~~~~~~-~~~g~~~~~a~~~ay~--~~i~~~g~~~R~Dig~~~~~~~ 55 (388)
.+||+. ++.|+|+++|+++||+ ++|+ .++|||+|||.+++.+.
T Consensus 380 ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig~~~~~~~ 425 (435)
T PRK06395 380 GSRSLAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIGDSDFIRK 425 (435)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchhhHHHHHH
Confidence 468876 8999999999999999 9999 99999999999887544
No 56
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00029 Score=75.22 Aligned_cols=200 Identities=17% Similarity=0.221 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEecccceee-----------CCcccCCCcceEEEEEEEEcCCcccCCCCCCCCCEEEEeCC
Q 046037 164 LAEKVIKGIVDGCQQSDCVLLGGETAEM-----------PDFYAAGEYDLSGFAVGIVKKDSVIDGKNIVPGDVLIGLPS 232 (388)
Q Consensus 164 ~~~ei~~Gi~~~c~~~g~~lvGGdt~~~-----------p~~~~~~~~~ls~t~vG~v~~~~~l~~~~a~~GD~Ii~~g~ 232 (388)
.+-|--.|-++.-++||=|++.|-+-.. .++.. ++.+++ -+|.+++.. .....+.||..|+.+|.
T Consensus 383 ImIEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~gerrey~K--PIMfsg-GiG~i~~~~-~~K~~~apg~~likiGG 458 (1320)
T KOG1907|consen 383 IMIEASNGASDYGNKFGEPVISGYARTFGMRVLLENGERREYHK--PIMFSG-GIGTIRKQH-ARKEPIAPGQLLIKIGG 458 (1320)
T ss_pred HHhhCcCChhhhcccccchhhhhhhhhhcccccccCcccccccc--ceEeec-ccCccCHHH-hhcCCCCCCCEEEEecC
Confidence 3444556667777788888888865321 11111 234444 588888654 44555899999999985
Q ss_pred ----CchHH-HHHHHHHHHHhccCCccccCCCCchh-----HHHHHhhccchhhHHHHHHHHHhCCccEEecCCCChhhh
Q 046037 233 ----SGVHS-NGFSLVRRVLAQSDLSLKDQLPSENT-----TLGEALMAPTVIYVKQVLDIISEGGVKGIAHITGGGFTD 302 (388)
Q Consensus 233 ----~G~~~-~G~sl~~~~~~~~~~~~~~~~~~~~~-----~~~e~ll~p~~~~~~~~~~l~~~~~v~a~~DIS~GGL~~ 302 (388)
+|..+ +..|... ..+ ..++..... +....+ ...++++.++-.+..|-+.||...||..-
T Consensus 459 p~yrIG~GGGAASSv~~----G~g---~aeLDFaaVQRGdaEM~~kl----~rVvrAC~~lge~NpI~sIHDqGAGGn~N 527 (1320)
T KOG1907|consen 459 PVYRIGVGGGAASSVVQ----GEG---SAELDFAAVQRGDAEMERKL----QRVVRACAELGENNPIQSIHDQGAGGNGN 527 (1320)
T ss_pred ceEEEecccchhhhhhc----CCC---ccccchHHhhcCCHHHHHHH----HHHHHHHHHhcCCCceeEeeccCCCcccc
Confidence 34332 2233321 111 111221111 222221 12466666665555799999999999999
Q ss_pred hhhhhc-CCCceEEEEcCCCCChHHHHHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC-CCCeEEEEEEE
Q 046037 303 NIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG-TYEAYHIGEVV 380 (388)
Q Consensus 303 ~L~~~~-~s~~g~~I~~~~ip~~~~~~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~-~~~~~~IG~V~ 380 (388)
.|.|+. +.++|++++...++.-+ -.++|.|++..-.. +..++.|++++.+-+.+++++ -.+..+||+++
T Consensus 528 vlkELV~~~~~Ga~~~~r~~~~gd--------psmS~~EiW~aEyQ-E~~allv~a~~l~~le~IckRERcp~svVG~vt 598 (1320)
T KOG1907|consen 528 VLKELVEDNDLGATFDSRTFQLGD--------PSMSPMEIWCAEYQ-ENYALLVKAEDLDILESICKRERCPVSVVGEVT 598 (1320)
T ss_pred ccHhhccccCCccEEEeeeeecCC--------CCCCHHHHhhhhhh-hcceeeeCHHHHHHHHHHHHhccCCeeEEEEEc
Confidence 999988 56899999998887543 24667666422211 137888999998888888877 48999999999
Q ss_pred cCCceEE
Q 046037 381 NGEGVSY 387 (388)
Q Consensus 381 ~~~gv~~ 387 (388)
.+..+.+
T Consensus 599 ~eqR~~l 605 (1320)
T KOG1907|consen 599 GEQRVIL 605 (1320)
T ss_pred cCceEEE
Confidence 8777654
No 57
>PHA03366 FGAM-synthase; Provisional
Probab=96.50 E-value=0.041 Score=63.39 Aligned_cols=202 Identities=11% Similarity=0.127 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEecccceeeCCcccCC----CcceEE-EEEEEEcCCcccCCCCCCCCCEEEEeCCCchHH-
Q 046037 164 LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAG----EYDLSG-FAVGIVKKDSVIDGKNIVPGDVLIGLPSSGVHS- 237 (388)
Q Consensus 164 ~~~ei~~Gi~~~c~~~g~~lvGGdt~~~p~~~~~~----~~~ls~-t~vG~v~~~~~l~~~~a~~GD~Ii~~g~~G~~~- 237 (388)
.+...++.-.+..+.+|.|+++|=+-..+--.... ...++- ..+|.++.. .+.....++|+.|+.+|..-...
T Consensus 311 ~~~~~~~~~~~~lnk~G~Pvi~Gf~r~~~~~~~~~~~~~~~m~~~~~~~g~~~~~-~~~~~~~~~g~~vv~lG~y~~~~g 389 (1304)
T PHA03366 311 QIAETLEAQARSLNCSGVPVVGGFLRTIPTTLALISPLPNNMLTFTSLLSTISTI-ALDTARYRPGQYIVALGSFEPSSG 389 (1304)
T ss_pred HHHHHHHHHHHHHhhcCCCEeccEeEEeccccccccccCCceeeecccccccchh-hhccCCCCCCCEEEEEcCceecCC
Confidence 45556666677788999999999887552100111 112321 135666543 34555678999999999543221
Q ss_pred -HHHHHHHHHHhccCCccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCc-cEEecCCCChhhhhhhhhcCCCceEE
Q 046037 238 -NGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGV-KGIAHITGGGFTDNIPRVFPKGLGAV 315 (388)
Q Consensus 238 -~G~sl~~~~~~~~~~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v-~a~~DIS~GGL~~~L~~~~~s~~g~~ 315 (388)
..-+.+. .+. ..++. ++. + -.+...+.+....+ .++||-..||....|.+++. ..|+.
T Consensus 390 ~~a~~~~~---~~S-----------~~~~n-avq---r-~~~~m~~~~~~~~v~~si~d~g~~~~~~~L~elv~-p~G~~ 449 (1304)
T PHA03366 390 PDTPPYLY---RDS-----------GLEAN-KIL---Q-ALKLFYSLLPGPCISGSSRPLGPASVLEHLLALCP-PGGLL 449 (1304)
T ss_pred CCCCCccc---ccC-----------HHHHH-HHH---H-HHHHHHhhcCCceEEEecCCCCcchHHHHHHHHhc-cCceE
Confidence 1001100 000 01111 000 0 01111111222222 57889888999989999885 57999
Q ss_pred EEcCCCCChHHHHHHHHhCCCCHHHH---Hh--hcCCCee-EEEEEecc--------cHHHHHHhcCC-CCCeEEEEEEE
Q 046037 316 IYEDSWKVPAVFKWIQQAGRIEDSEM---RR--TFNMGIG-MVLVVSKE--------TSHTILEGGCG-TYEAYHIGEVV 380 (388)
Q Consensus 316 I~~~~ip~~~~~~~i~~~~~~~~~e~---~~--~f~~G~g-ll~~v~~e--------~~~~i~~~l~~-~~~~~~IG~V~ 380 (388)
|+.+++| .+....+..-+.-+.+.+ ++ .||.-.. +.++++++ ..+.+.+.++. .++++++|++|
T Consensus 450 i~~~~lp-d~tls~le~~~~e~qe~~~~~v~~~flnv~~~~~~l~i~~~~~~~~~~~~l~~l~~ic~rercp~~vvG~~t 528 (1304)
T PHA03366 450 LFLSALP-EDVVSGLKPFSASNRETNEEIVKQYFLNVYCSVVFLVIKNTHEGGEGVTPLDALKRACRLAGCPVHILGRTV 528 (1304)
T ss_pred EEhhhCC-hHHhhhhhcccccchhHHHHHhhhhhcccccceEEEEEcCcccccccccHHHHHHHHHHHcCCCEEEEEEEe
Confidence 9999999 444443321112222222 21 2344333 45567777 66666666655 59999999999
Q ss_pred cCCceEE
Q 046037 381 NGEGVSY 387 (388)
Q Consensus 381 ~~~gv~~ 387 (388)
++.++.+
T Consensus 529 ~~~~~~~ 535 (1304)
T PHA03366 529 PLPGIHF 535 (1304)
T ss_pred cCCcEEE
Confidence 9888765
No 58
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=95.87 E-value=0.61 Score=44.99 Aligned_cols=221 Identities=11% Similarity=0.169 Sum_probs=107.1
Q ss_pred hCChhHHHHH--Hhc-CC---CCCHHHHHHH---HHHHHHHHHHcCCeEecccceeeCC-cccCCCcc--eEEEEEEEEc
Q 046037 144 SGAKPLFFLD--YFA-TS---HLEVDLAEKV---IKGIVDGCQQSDCVLLGGETAEMPD-FYAAGEYD--LSGFAVGIVK 211 (388)
Q Consensus 144 ~GA~P~~~ld--~l~-~~---~~~~e~~~ei---~~Gi~~~c~~~g~~lvGGdt~~~p~-~~~~~~~~--ls~t~vG~v~ 211 (388)
.|+.|++..- |.. ++ +++.+...++ ++.=.+..+..|+|++||=.-..+. ...+.+.. +.....+.+.
T Consensus 30 P~~~~~aa~~G~Y~~~~~~~~~~~~~~~~~~~~~l~aq~~~l~~~GvPv~~GF~R~i~~~~~~~~~~~~~~~~s~l~~~~ 109 (282)
T PF12818_consen 30 PGVSPIAAALGLYVTSPSQVGDLSHKVHRQITTALQAQARSLNASGVPVVGGFIRPIDSHLSGPVPLNVLTFTSILGSIS 109 (282)
T ss_pred CCCcHhhhhceeeEecCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCccCcEeEEecCcccccccCceEEEEEEEcccc
Confidence 6889987773 433 32 2333344444 4445555567899999998876641 11111111 1222344444
Q ss_pred CCcccCCCCCCCCCEEEEeCCCchHHHHHHHHHHHHhccC-CccccCCCCchhHHHHHhhccchhhHHHHHHHHHhCCc-
Q 046037 212 KDSVIDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSD-LSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISEGGV- 289 (388)
Q Consensus 212 ~~~~l~~~~a~~GD~Ii~~g~~G~~~~G~sl~~~~~~~~~-~~~~~~~~~~~~~~~e~ll~p~~~~~~~~~~l~~~~~v- 289 (388)
+ ..+.-...++||.|+.+|++=.... ...+ ..+. +...++.. +++ -++...+......|
T Consensus 110 ~-~~l~~~~~~~g~~iv~LG~F~p~~~---------~d~~p~~y~----dS~~~~~~-i~~----aL~~f~~~~~~~cis 170 (282)
T PF12818_consen 110 Q-TNLNTARPRPGQYIVCLGDFEPTPG---------PDTPPYTYR----DSGLEQNK-ILQ----ALQQFYSTLESPCIS 170 (282)
T ss_pred h-hhhhccCCCCCCEEEEecCCcccCC---------CCCCCcccc----cCHHHHHH-HHH----HHHHHHHhcCCCcEE
Confidence 3 3455667889999999987432110 0000 0000 00111111 000 01111112222233
Q ss_pred cEEecCCCChhhhhhhhhcCCCceEEEEcCCCCChHHHHHHHHhCCCC---HHHHHh--hcCCCee-EEEEEeccc----
Q 046037 290 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIE---DSEMRR--TFNMGIG-MVLVVSKET---- 359 (388)
Q Consensus 290 ~a~~DIS~GGL~~~L~~~~~s~~g~~I~~~~ip~~~~~~~i~~~~~~~---~~e~~~--~f~~G~g-ll~~v~~e~---- 359 (388)
+.+.+.--.-+...|.+++ ...|+.|+.+.+|. ++...+.+....+ -+++++ .||--.. +.++|+.+.
T Consensus 171 ~~~r~~~~~sv~~~L~aL~-~~~G~~l~lS~LP~-~i~~~L~~~~~~~~~~~~~~i~~~FLNv~~~~vfl~V~n~~~~~~ 248 (282)
T PF12818_consen 171 GSIRPPGPASVKEHLLALC-HPGGARLDLSALPQ-EIVSQLKRSPPENREHNEEIIKQHFLNVYCSVVFLVVSNTPIDTN 248 (282)
T ss_pred eecCCCCchhHHHHHHHhc-CCCceEEEhhcCCH-HHHHHhccCCchhHHHHHHHHHhhhhccccceEEEEEecCCCCCc
Confidence 2333333333455666665 46899999999874 3344443322222 122332 2344333 444554433
Q ss_pred --H-----HHHHHhcCC-CCCeEEEEEEEcCCce
Q 046037 360 --S-----HTILEGGCG-TYEAYHIGEVVNGEGV 385 (388)
Q Consensus 360 --~-----~~i~~~l~~-~~~~~~IG~V~~~~gv 385 (388)
. +.+...+.. ++++.+||+.++..||
T Consensus 249 ~~~~~~~l~~L~~~c~~~gc~~~iLG~t~~~~Gi 282 (282)
T PF12818_consen 249 TDQGFGPLDALKRACRLCGCPVHILGRTCPEPGI 282 (282)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEEeeeccCCCC
Confidence 1 223333333 6999999999988875
No 59
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=65.92 E-value=5.3 Score=39.63 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhCChhHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHcCCeEec
Q 046037 131 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLE--VDLAEKVIKGIVDGCQQSDCVLLG 185 (388)
Q Consensus 131 ~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~--~e~~~ei~~Gi~~~c~~~g~~lvG 185 (388)
...+..++.++..+||.-+.++.++.+.... .+...+.++-+.+.|+++|+|++-
T Consensus 105 ~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 105 DLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred cccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 4566677899999999988888777765333 356667899999999999999885
No 60
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=65.58 E-value=5.4 Score=28.05 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=16.3
Q ss_pred EEEeeCCCHHHHHHHhhc
Q 046037 16 FASKLNPTNNVLLNCAYE 33 (388)
Q Consensus 16 ~~~~~g~~~~~a~~~ay~ 33 (388)
++.+.|+|+.+|.++||.
T Consensus 38 VcigFGDTl~~A~~kaya 55 (60)
T PF04694_consen 38 VCIGFGDTLFEAEQKAYA 55 (60)
T ss_pred EEEecchHHHHHHHhhhh
Confidence 447999999999999997
No 61
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=36.70 E-value=26 Score=35.72 Aligned_cols=32 Identities=6% Similarity=-0.165 Sum_probs=28.6
Q ss_pred EEEeeCCCHHHHHHHhhc--cCccCCCCccchhhhh
Q 046037 16 FASKLNPTNNVLLNCAYE--CKLPFLSMASRRVSVN 49 (388)
Q Consensus 16 ~~~~~g~~~~~a~~~ay~--~~i~~~g~~~R~Dig~ 49 (388)
.+.+.|+|.++|++++++ ++|.|+| +|+-|-+
T Consensus 387 ~vi~~g~~~~ea~~~~~~~~~~i~~~g--~~~~~~~ 420 (450)
T PRK06111 387 KLIAHGETREEAISRLHDALEELKVEG--IKTNIPL 420 (450)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCEEeC--ccCCHHH
Confidence 779999999999999999 9999999 6776664
No 62
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=29.03 E-value=42 Score=28.65 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=35.5
Q ss_pred CceeeeccccccceEEEEeeCCCHHHHHHHhhc---cCccCCCCccch
Q 046037 1 MRISIATNTELSSRFFASKLNPTNNVLLNCAYE---CKLPFLSMASRR 45 (388)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~ay~---~~i~~~g~~~R~ 45 (388)
|.+.+-.+....-.+-++.-++.++++++++|+ +++..+| ||+
T Consensus 1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~ipG--FRk 46 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVKIPG--FRK 46 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTTBTT--S-T
T ss_pred CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCCCCC--CCC
Confidence 778888888888888889999999999999999 9999998 566
No 63
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=28.68 E-value=24 Score=35.07 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEec
Q 046037 131 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLG 185 (388)
Q Consensus 131 ~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvG 185 (388)
.+.+..++-|.+.+||.-++++.++. +..+..+-+-+.-+.+.|+++|+|++.
T Consensus 145 ~~~l~~sVedAlrLGAdAV~~tvy~G--s~~E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 145 DQALTASVEDALRLGAVAVGATIYFG--SEESRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred cccceecHHHHHHCCCCEEEEEEecC--CHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 46777889999999999777665554 434444445577899999999999986
No 64
>PRK08227 autoinducer 2 aldolase; Validated
Probab=28.36 E-value=24 Score=33.74 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=47.2
Q ss_pred ceEEEEeccCCCccccccccCChhHHHHHHHHHHHHHHhhhCChhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Q 046037 104 SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVL 183 (388)
Q Consensus 104 ~~lv~stD~~~~k~~~~~~~~~~~~iG~~aVa~nvsDIaa~GA~P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~l 183 (388)
..+++..++- +.+. +. ++ .+.+..++-|.+.+||.-+++..++ ++..+..+-+-+.-+.+.|++||+|+
T Consensus 75 ~~lil~ls~~-t~~~--~~--~~----~~~l~~sVeeAvrlGAdAV~~~v~~--Gs~~E~~~l~~l~~v~~ea~~~G~Pl 143 (264)
T PRK08227 75 KPVVLRASGG-NSIL--KE--LS----NEAVAVDMEDAVRLNACAVAAQVFI--GSEYEHQSIKNIIQLVDAGLRYGMPV 143 (264)
T ss_pred CcEEEEEcCC-CCCC--CC--CC----cccceecHHHHHHCCCCEEEEEEec--CCHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 3477777752 3222 11 11 3566777899999999966665554 44444444455778899999999999
Q ss_pred ec
Q 046037 184 LG 185 (388)
Q Consensus 184 vG 185 (388)
+.
T Consensus 144 la 145 (264)
T PRK08227 144 MA 145 (264)
T ss_pred EE
Confidence 96
No 65
>COG3721 HugX Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=28.16 E-value=1.2e+02 Score=26.65 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=32.3
Q ss_pred HHHHHhCCCCHHHHHhhcCCCeeEEEEEecccHHHHHHhcCC
Q 046037 328 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGCG 369 (388)
Q Consensus 328 ~~i~~~~~~~~~e~~~~f~~G~gll~~v~~e~~~~i~~~l~~ 369 (388)
..+++++++.+.|.++..-++ ++.+||.+.++.+.+.+.+
T Consensus 31 eamA~~~~v~~~eIv~aLP~~--~v~vvpgdrfd~iw~~m~e 70 (176)
T COG3721 31 EAMAEQYNVTELEIVRALPEE--AVVVVPGDRFDTIWDEMCE 70 (176)
T ss_pred HHHHHHhCCCHHHHHHhCchh--heeecchHHHHHHHHHhhc
Confidence 456777888888888777654 8999999999999888766
No 66
>PF15569 Imm21: Immunity protein 21
Probab=27.63 E-value=56 Score=26.02 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCeEecccceeeC
Q 046037 169 IKGIVDGCQQSDCVLLGGETAEMP 192 (388)
Q Consensus 169 ~~Gi~~~c~~~g~~lvGGdt~~~p 192 (388)
+--+...|++-+++|+|||+-...
T Consensus 17 al~ii~~~~~~~i~ILGGDVY~~~ 40 (91)
T PF15569_consen 17 ALKIINICEEKNIPILGGDVYKLK 40 (91)
T ss_pred HHHHHHHHHhcCceEEcceEEEee
Confidence 334667899999999999999764
No 67
>PRK06852 aldolase; Validated
Probab=22.68 E-value=43 Score=32.71 Aligned_cols=53 Identities=8% Similarity=-0.129 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhCCh----hHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCeEec
Q 046037 133 LVAMSVNDIVTSGAK----PLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLG 185 (388)
Q Consensus 133 aVa~nvsDIaa~GA~----P~~~ld~l~~~~~~~e~~~ei~~Gi~~~c~~~g~~lvG 185 (388)
.+..++-|.+.+|+. -.++...+.+++..+..+-+-+.-+.+.|++||+|++.
T Consensus 116 ~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 116 RQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred cceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 556668899999944 33333344445444444555577889999999999986
Done!