RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046037
         (388 letters)



>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase
           (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 166

 Score =  165 bits (419), Expect = 1e-50
 Identities = 92/164 (56%), Positives = 113/164 (68%), Gaps = 13/164 (7%)

Query: 66  LTYKDSGVDIDAGSELVRRIAKMA---------PGIGGFGGLF----PLGDSYLVAGTDG 112
           L+YKD+GVDIDAG+ LV RI  +           G+GGFG L        +  LV+GTDG
Sbjct: 3   LSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDG 62

Query: 113 VGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 172
           VGTKL+LA +   HDTIGIDLVAM VND+V  GA+PLFFLDY+AT  L+VD A  VI GI
Sbjct: 63  VGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGI 122

Query: 173 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVI 216
            +GC QS C L+GGETAEMP  Y   +YD++GF VG+V+K  +I
Sbjct: 123 AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEII 166


>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide
           synthetase (PurM) C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 175

 Score =  153 bits (388), Expect = 6e-46
 Identities = 76/170 (44%), Positives = 99/170 (58%), Gaps = 4/170 (2%)

Query: 217 DGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIY 276
           DG  +  GDVLI L SSG HSNG+SLVR++L  S    +     +   L + L+APT IY
Sbjct: 1   DGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTT-ELDGKPLADHLLAPTRIY 59

Query: 277 VKQVLDIISEGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRI 336
           VK VL++I +  V  IAH+TGGGF +NIPRV P    AVI E SW+ P VF W+Q AG +
Sbjct: 60  VKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNV 119

Query: 337 EDSEMRRTFNMGIGMVLVVSKETSHTILE--GGCGTYEAYHIGEVVNGEG 384
           E  EM RTFN G+GM++ +        L      G   A+ IG +   + 
Sbjct: 120 EHHEMYRTFNCGVGMIIALPAPEVDKALALLNANG-ENAWKIGIIKASDS 168


>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation
           protein HypE {Thermococcus kodakaraensis [TaxId:
           311400]}
          Length = 113

 Score = 73.9 bits (181), Expect = 7e-17
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 96  GGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYF 155
           G   P GD ++V   DG   K            IG   V+ +VND+   GA+P+   +  
Sbjct: 2   GATIPFGDKHIVFTIDGHTVK----PLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSM 57

Query: 156 ATSH-LEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKK 212
                L++++ ++V+K + +  ++    ++ G+T  + D     E  +    +GI + 
Sbjct: 58  IIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVED---KIEMFVITAGIGIAEH 112


>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL)
           N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 137

 Score = 57.9 bits (139), Expect = 5e-11
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 80  ELVRRIAKM--APGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMS 137
            L+  I K   +  IG            L+  TD +   +         + +G   ++++
Sbjct: 10  GLIDLIKKTLESKVIGDDTAPVEYCSKKLLLTTDVLNEGVHFLRSYI-PEAVGWKAISVN 68

Query: 138 VNDIVTSGAKPL-FFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYA 196
           V+D++ +G  P    +       LEV   E+   G+   C+   C ++GG  ++      
Sbjct: 69  VSDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKIG- 127

Query: 197 AGEYDLSGFAVGIVK 211
                +S F VG  +
Sbjct: 128 -----ISVFLVGETE 137


>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 152

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 91  GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHD--TIGIDLVAMSVNDIVTSGAKP 148
            IG   G++       V   D             ++D    G    A +++D+   G  P
Sbjct: 38  SIGDDAGVYEHNGIIWVYTVDI--------ITPVVNDPYLWGAISTANALSDVYAMGGIP 89

Query: 149 LFFLDYFATSHLEVD--LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFA 206
           +  L     ++ E+D  +  +VI+G +D  +++  VLLGG T +  +             
Sbjct: 90  VNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKEPK------FGLSV 143

Query: 207 VGIVKKD 213
            GI  + 
Sbjct: 144 AGICPEG 150


>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
           protein HypE {Thermococcus kodakaraensis [TaxId:
           311400]}
          Length = 179

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 21/166 (12%)

Query: 223 PGDVLIGLPSSGVHSNGFSLVRRVLAQSDLSLKDQLPSENTTLGEALMAPTVIYVKQVLD 282
            GD ++   + G H       R  +A       D             +AP    VK V +
Sbjct: 8   VGDAVLVSGTIGDHGIALMSHREGIAFETELKSD-------------VAPIWDVVKAVAE 54

Query: 283 IISEGGVKGIAHITGGGFTDNIPR-VFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEM 341
            I    +  +   T  G ++ +        +G ++ E    +    +   +   I   ++
Sbjct: 55  TIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPYDV 114

Query: 342 RRTFNMGIGMVLVVSKETSHTILE---GGCGTYEAYHIGEVVNGEG 384
                    +V+VV++E +   LE          A  IGEV+    
Sbjct: 115 ----ANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYR 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,412,437
Number of extensions: 66123
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 11
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)