BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046038
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
          LACTONIZING ENZYME- Like Protein From Rubrobacter
          Xylanophilus
 pdb|3CYJ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
          LACTONIZING ENZYME- Like Protein From Rubrobacter
          Xylanophilus
 pdb|3CYJ|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
          LACTONIZING ENZYME- Like Protein From Rubrobacter
          Xylanophilus
 pdb|3CYJ|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
          LACTONIZING ENZYME- Like Protein From Rubrobacter
          Xylanophilus
          Length = 372

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 2  GNHVTTSLTGVAIGVDVTSTEKIWSSLQA 30
          G  V + L GVA G D  S   +W+ +QA
Sbjct: 59 GRFVESKLAGVAEGSDALSPPAVWARMQA 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.140    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,557,134
Number of Sequences: 62578
Number of extensions: 293020
Number of successful extensions: 540
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 9
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)