Query 046038
Match_columns 265
No_of_seqs 127 out of 1122
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:08:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 5E-37 1.1E-41 282.4 18.7 203 25-251 241-449 (449)
2 PTZ00206 amino acid transporte 100.0 6.3E-36 1.4E-40 282.9 15.2 205 26-252 257-465 (467)
3 PLN03074 auxin influx permease 100.0 2.4E-35 5.2E-40 278.7 18.7 218 21-264 229-464 (473)
4 KOG1303 Amino acid transporter 100.0 2.3E-35 5E-40 274.4 16.5 206 28-254 231-437 (437)
5 PF01490 Aa_trans: Transmembra 100.0 1.5E-32 3.2E-37 254.7 0.8 216 20-248 187-408 (409)
6 KOG1305 Amino acid transporter 100.0 2.1E-27 4.6E-32 219.9 17.9 220 16-254 185-408 (411)
7 KOG4303 Vesicular inhibitory a 99.9 4.9E-30 1.1E-34 226.0 -4.6 223 22-260 299-523 (524)
8 COG0814 SdaC Amino acid permea 99.6 5.7E-14 1.2E-18 131.3 15.7 219 22-247 190-411 (415)
9 TIGR00837 araaP aromatic amino 99.0 1.1E-08 2.3E-13 94.6 14.5 170 25-219 178-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.8 3.9E-07 8.5E-12 84.9 17.7 173 21-220 180-366 (394)
11 PRK15132 tyrosine transporter 98.6 1.5E-06 3.2E-11 81.1 15.9 189 27-240 183-388 (403)
12 PRK10483 tryptophan permease; 98.5 6.9E-06 1.5E-10 76.7 16.0 168 26-219 193-373 (414)
13 PRK13629 threonine/serine tran 98.3 3.1E-05 6.7E-10 72.7 16.3 203 26-242 210-437 (443)
14 TIGR00814 stp serine transport 98.3 6.4E-06 1.4E-10 76.9 11.8 180 24-216 185-376 (397)
15 PRK09664 tryptophan permease T 98.3 2.7E-05 5.8E-10 72.8 15.8 169 26-219 194-374 (415)
16 PRK11021 putative transporter; 97.9 0.0021 4.6E-08 60.0 19.4 57 23-82 175-231 (410)
17 TIGR03813 put_Glu_GABA_T putat 97.7 0.0027 5.8E-08 60.5 16.7 50 33-85 202-251 (474)
18 PRK10655 potE putrescine trans 97.6 0.0039 8.6E-08 58.7 17.4 57 25-84 189-245 (438)
19 PRK10644 arginine:agmatin anti 97.6 0.0068 1.5E-07 57.2 18.1 55 26-83 192-246 (445)
20 PRK10746 putative transport pr 97.5 0.0082 1.8E-07 57.1 18.0 56 24-82 199-254 (461)
21 PRK10435 cadB lysine/cadaverin 97.5 0.0092 2E-07 56.3 17.6 62 23-87 185-246 (435)
22 PRK15049 L-asparagine permease 97.5 0.0074 1.6E-07 58.1 17.0 60 24-86 219-278 (499)
23 PRK10249 phenylalanine transpo 97.5 0.0095 2.1E-07 56.6 17.6 55 26-83 210-264 (458)
24 PRK10197 gamma-aminobutyrate t 97.4 0.0076 1.7E-07 57.1 16.3 56 24-82 180-235 (446)
25 PRK11049 D-alanine/D-serine/gl 97.4 0.015 3.3E-07 55.4 17.7 57 25-84 211-267 (469)
26 PRK10238 aromatic amino acid t 97.3 0.016 3.5E-07 55.0 16.8 51 26-79 201-251 (456)
27 PRK10580 proY putative proline 97.2 0.02 4.4E-07 54.2 16.9 54 26-82 200-253 (457)
28 TIGR03810 arg_ornith_anti argi 97.2 0.027 5.9E-07 53.6 17.6 59 26-88 196-254 (468)
29 PRK11357 frlA putative fructos 97.2 0.012 2.5E-07 55.6 14.2 57 24-83 194-250 (445)
30 TIGR00909 2A0306 amino acid tr 97.2 0.027 5.7E-07 52.8 16.4 58 24-84 194-251 (429)
31 PRK11387 S-methylmethionine tr 97.1 0.023 5.1E-07 54.1 16.1 57 24-83 205-261 (471)
32 PF13520 AA_permease_2: Amino 97.1 0.034 7.4E-07 51.9 16.6 59 27-90 190-248 (426)
33 TIGR00913 2A0310 amino acid pe 97.1 0.059 1.3E-06 51.3 18.5 56 24-82 196-251 (478)
34 TIGR00907 2A0304 amino acid pe 97.1 0.028 6E-07 53.7 15.8 53 25-80 217-269 (482)
35 TIGR00906 2A0303 cationic amin 97.0 0.019 4.1E-07 56.1 14.4 56 24-82 230-285 (557)
36 TIGR00908 2A0305 ethanolamine 97.0 0.022 4.8E-07 53.6 14.5 55 24-81 190-244 (442)
37 TIGR01773 GABAperm gamma-amino 96.9 0.062 1.3E-06 50.8 16.6 57 25-84 201-257 (452)
38 PRK10836 lysine transporter; P 96.9 0.076 1.6E-06 50.9 17.1 57 26-85 206-262 (489)
39 TIGR00905 2A0302 transporter, 96.8 0.092 2E-06 50.0 17.1 58 24-85 198-255 (473)
40 PRK15238 inner membrane transp 96.8 0.068 1.5E-06 51.3 16.2 53 26-81 212-264 (496)
41 KOG1287 Amino acid transporter 96.7 0.022 4.7E-07 54.1 11.7 177 26-221 205-388 (479)
42 TIGR00911 2A0308 L-type amino 96.6 0.047 1E-06 52.4 13.6 58 24-84 234-291 (501)
43 COG0531 PotE Amino acid transp 96.6 0.075 1.6E-06 49.9 14.7 61 26-89 202-262 (466)
44 TIGR00930 2a30 K-Cl cotranspor 96.6 0.34 7.3E-06 50.4 20.3 53 27-82 282-334 (953)
45 TIGR03428 ureacarb_perm permea 96.5 0.53 1.1E-05 44.9 19.5 61 25-88 213-273 (475)
46 TIGR00910 2A0307_GadC glutamat 96.3 0.27 5.9E-06 47.4 16.8 51 27-80 196-246 (507)
47 PF00324 AA_permease: Amino ac 93.6 0.097 2.1E-06 49.9 4.7 65 23-90 198-262 (478)
48 COG1113 AnsP Gamma-aminobutyra 93.2 1.1 2.4E-05 42.4 10.7 177 24-218 202-388 (462)
49 TIGR00912 2A0309 spore germina 92.3 2.3 5E-05 38.7 11.7 58 32-93 186-243 (359)
50 KOG1286 Amino acid transporter 90.4 1.7 3.8E-05 42.4 9.2 176 24-217 231-421 (554)
51 KOG4812 Golgi-associated prote 83.0 2.7 5.8E-05 36.4 5.1 78 174-255 161-254 (262)
52 KOG1289 Amino acid transporter 74.6 45 0.00098 32.5 11.1 68 23-93 250-317 (550)
53 PRK04949 putative sulfate tran 70.2 65 0.0014 28.2 10.4 46 49-100 19-64 (251)
54 PRK12768 CysZ-like protein; Re 67.4 65 0.0014 28.0 9.7 35 49-88 10-44 (240)
55 TIGR00800 ncs1 NCS1 nucleoside 62.1 1.4E+02 0.0031 28.1 12.9 68 21-92 203-275 (442)
56 PRK11375 allantoin permease; P 57.4 1.8E+02 0.004 27.9 13.3 64 24-91 226-294 (484)
57 PF03845 Spore_permease: Spore 55.9 17 0.00036 32.6 4.2 69 21-93 171-239 (320)
58 PHA02680 ORF090 IMV phosphoryl 55.9 39 0.00085 24.5 5.1 66 25-95 11-76 (91)
59 PRK13183 psbN photosystem II r 54.5 15 0.00033 23.3 2.6 31 61-91 4-34 (46)
60 cd08765 Cyt_b561_CYBRD1 Verteb 53.6 63 0.0014 26.1 6.7 68 59-130 44-111 (153)
61 KOG2082 K+/Cl- cotransporter K 52.4 2.2E+02 0.0047 29.4 11.3 96 26-127 411-522 (1075)
62 CHL00020 psbN photosystem II p 50.5 14 0.0003 23.1 1.9 27 64-90 4-30 (43)
63 TIGR00813 sss transporter, SSS 49.6 2E+02 0.0043 26.6 10.5 40 47-88 223-265 (407)
64 COG0833 LysP Amino acid transp 49.1 2.7E+02 0.0058 27.3 15.0 53 24-79 233-285 (541)
65 PF00474 SSF: Sodium:solute sy 48.9 1.4E+02 0.003 27.6 9.3 38 175-213 350-387 (406)
66 PF02468 PsbN: Photosystem II 45.5 19 0.0004 22.6 1.9 26 65-90 5-30 (43)
67 COG1914 MntH Mn2+ and Fe2+ tra 41.3 3.2E+02 0.0069 25.9 15.8 55 165-219 324-378 (416)
68 PHA03048 IMV membrane protein; 40.2 70 0.0015 23.4 4.4 63 26-94 12-74 (93)
69 PRK11281 hypothetical protein; 38.8 5.2E+02 0.011 27.9 12.4 29 61-89 542-570 (1113)
70 PLN02351 cytochromes b561 fami 38.4 1.3E+02 0.0028 26.3 6.6 75 47-130 72-146 (242)
71 TIGR02358 thia_cytX probable h 34.9 3.7E+02 0.008 24.8 13.4 44 42-89 190-233 (386)
72 PRK11026 ftsX cell division AB 34.4 2.3E+02 0.005 25.5 8.0 26 230-255 281-306 (309)
73 PLN02680 carbon-monoxide oxyge 34.4 2.2E+02 0.0048 24.7 7.5 68 59-130 76-143 (232)
74 KOG1619 Cytochrome b [Energy p 31.6 1.9E+02 0.0041 25.2 6.5 99 24-130 54-152 (245)
75 cd08766 Cyt_b561_ACYB-1_like P 28.7 2.6E+02 0.0056 22.2 6.6 68 59-130 37-104 (144)
76 PF03134 TB2_DP1_HVA22: TB2/DP 28.1 2E+02 0.0044 20.6 5.5 37 194-230 2-40 (94)
77 PF05216 UNC-50: UNC-50 family 28.0 3.6E+02 0.0079 23.3 7.7 75 2-88 117-192 (231)
78 PF07125 DUF1378: Protein of u 27.7 1.5E+02 0.0033 19.6 4.0 29 226-254 6-34 (59)
79 TIGR00439 ftsX putative protei 26.9 4.2E+02 0.009 23.8 8.4 26 230-255 281-306 (309)
80 KOG2349 Na+:iodide/myo-inosito 26.4 5.6E+02 0.012 25.5 9.5 83 2-87 215-301 (585)
81 PF11188 DUF2975: Protein of u 26.3 1.3E+02 0.0028 22.8 4.4 15 249-263 44-58 (136)
82 PF07954 DUF1689: Protein of u 26.2 2.8E+02 0.0062 22.3 6.4 61 194-254 33-94 (152)
83 PLN02810 carbon-monoxide oxyge 24.7 4E+02 0.0086 23.1 7.3 68 59-130 76-143 (231)
84 PF11286 DUF3087: Protein of u 24.2 3.3E+02 0.0071 22.3 6.4 43 57-99 11-53 (165)
85 PF07423 DUF1510: Protein of u 24.1 94 0.002 26.6 3.4 33 58-92 9-41 (217)
86 COG3476 Tryptophan-rich sensor 23.7 2.1E+02 0.0046 23.3 5.2 53 34-91 20-72 (161)
87 PRK09442 panF sodium/panthothe 23.4 6.4E+02 0.014 23.9 16.6 31 59-89 267-300 (483)
88 KOG1288 Amino acid transporter 23.3 31 0.00068 34.7 0.4 34 47-83 316-349 (945)
89 COG0591 PutP Na+/proline sympo 23.1 6.8E+02 0.015 24.0 17.2 60 30-90 240-300 (493)
90 cd08763 Cyt_b561_CYB561 Verteb 22.9 3.7E+02 0.008 21.3 6.5 68 59-130 37-104 (143)
91 PRK09400 secE preprotein trans 22.9 1.2E+02 0.0026 20.4 3.1 31 49-85 22-52 (61)
92 cd08762 Cyt_b561_CYBASC3 Verte 22.5 4E+02 0.0087 22.1 6.7 68 59-130 67-134 (179)
93 TIGR00327 secE_euk_arch protei 21.9 1.3E+02 0.0029 20.3 3.1 31 49-85 18-48 (61)
94 PRK10484 putative transporter; 21.6 7.3E+02 0.016 23.9 16.3 42 47-90 264-308 (523)
95 PHA02898 virion envelope prote 20.9 2.1E+02 0.0045 20.9 4.1 66 27-97 13-78 (92)
96 PF10661 EssA: WXG100 protein 20.7 1.7E+02 0.0037 23.4 4.1 19 234-252 126-144 (145)
97 COG4478 Predicted membrane pro 20.4 3.7E+02 0.0081 22.7 6.0 67 189-256 84-153 (210)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-37 Score=282.42 Aligned_cols=203 Identities=19% Similarity=0.253 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhh---HHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCC
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMK---RASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGF 101 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~---~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~ 101 (265)
-+.+..+|+.+|||+|++++.|++++||+| ++|. +++..+|.+++++|+.+|++||++|||++++.|+.|+|+
T Consensus 241 ~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~ 316 (449)
T KOG1304|consen 241 SGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ 316 (449)
T ss_pred hhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc
Confidence 357899999999999999999999999999 8999 999999999999999999999999999999999999995
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHHHHH
Q 046038 102 YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181 (265)
Q Consensus 102 ~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~ 181 (265)
.|+.+.++++++++++++||+|.+|..+.+|+.+.++..+ .++++..+.+|+.+|+++..
T Consensus 317 ---~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~ 376 (449)
T KOG1304|consen 317 ---EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFL 376 (449)
T ss_pred ---cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999986543221 11357788999999999999
Q ss_pred HHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046038 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRK---FSVTWMWLQVLSWTCFIVTLLAAAGSIQGL 251 (265)
Q Consensus 182 iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~---~~~~~~~~~~ii~~g~~~~v~Gty~si~~i 251 (265)
+|.++|+++++++|+||++++.+.+++|++++++.++++. ..++++.|..++++|++.++.|||+|+.++
T Consensus 377 iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 377 IAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999999999999976543 244566778899999999999999998764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.3e-36 Score=282.89 Aligned_cols=205 Identities=17% Similarity=0.256 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccc-CCCCc
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGF-GFYEP 104 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl-~~~~~ 104 (265)
+.+.++|+++|||.||.+.||+++|||+|++ +||.+++..++.+++++|..+|++||++||++++++++.|+ |.++
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~- 333 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE- 333 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC-
Confidence 5789999999999999999999999999854 89999999999999999999999999999999999999999 5444
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHHHHHHHH
Q 046038 105 FWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAM 184 (265)
Q Consensus 105 ~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi 184 (265)
....++++++.++++.+||++.+|+|+.+++.+.. +.+ +.+ .+++...+..+++++.++|+
T Consensus 334 -~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi 394 (467)
T PTZ00206 334 -PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGW--DAR---------KVA-------FWKHCIAVVTLSVVMLLCGL 394 (467)
T ss_pred -chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--Ccc---------cCc-------hhhHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999999999987532 111 111 24455566667778899999
Q ss_pred hcCchHHHHHHhhhhhhhhHHHHHHHHHHHHH---hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046038 185 LFPFFNSVIGLLGAIAFWPLTVYFPVEMYISR---AKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLV 252 (265)
Q Consensus 185 ~iP~~~~vlslvGs~~~~~l~filP~l~yl~~---~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~ii 252 (265)
.+|+++.+++|+||++++.++|++|+++|++. ++++.++.+|+.+++++++|++.++.|||+|+.+.+
T Consensus 395 ~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 395 FIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred ccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999999999999999984 233344455667889999999999999999998876
No 3
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.4e-35 Score=278.70 Aligned_cols=218 Identities=17% Similarity=0.211 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc--ccccc
Q 046038 21 TEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG--NFLTG 98 (265)
Q Consensus 21 ~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~--~il~n 98 (265)
+.++...+.++++++|||++|.++|||++||||| ++|++++..++.+++++|..+|+.||++|||++++ +.+.|
T Consensus 229 ~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~ 304 (473)
T PLN03074 229 PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSL 304 (473)
T ss_pred chhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhc
Confidence 3456678888999999999999999999999999 78999999999999999999999999999999864 56777
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHH
Q 046038 99 FGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVIL 178 (265)
Q Consensus 99 l~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~ 178 (265)
+|.+ .+ ..+++++++++++.+|+++.+|+.+.+|+..... + .+....|+++|+.++++
T Consensus 305 lp~~--~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~ 362 (473)
T PLN03074 305 LPRS--GW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--D-----------------TKSICLRALARLPVVVP 362 (473)
T ss_pred CCCc--hH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHH
Confidence 8843 24 6789999999999999999999999998864311 0 01246789999999999
Q ss_pred HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc-------------ccchh--HHHHHHHHHH-HHHHHHH
Q 046038 179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIR-------------KFSVT--WMWLQVLSWT-CFIVTLL 242 (265)
Q Consensus 179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~-------------~~~~~--~~~~~~ii~~-g~~~~v~ 242 (265)
++++|+.+|+|+++++|+||++++.++|++|+++|++.++++ .++++ .+.|++++++ +++.++.
T Consensus 363 ~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~ 442 (473)
T PLN03074 363 IWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGF 442 (473)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhcc
Confidence 999999999999999999999999999999999999876432 11222 2567777765 5555689
Q ss_pred HHHHHHHHHHHhcccccCCCCC
Q 046038 243 AAAGSIQGLVKDLQTYKPFSSA 264 (265)
Q Consensus 243 Gty~si~~ii~~~~~~~~f~~~ 264 (265)
|+|+|++++++++++|+.|++.
T Consensus 443 G~~asi~~ii~~~~~~~~f~~~ 464 (473)
T PLN03074 443 GGWASMTNFVRQIDTFGLFAKC 464 (473)
T ss_pred chHHHHHHHHHhhhhhhhhhhh
Confidence 9999999999999999999874
No 4
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=274.38 Aligned_cols=206 Identities=39% Similarity=0.730 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHH
Q 046038 28 LQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWL 107 (265)
Q Consensus 28 ~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~ 107 (265)
++++|+++|+|++|.++||||++||+| ++|+|++..++.+++.+|+.+++.|||+|||+++++++.|++ +|.|.
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~ 304 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWL 304 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhH
Confidence 899999999999999999999999999 679999999999999999999999999999999999999996 46799
Q ss_pred HHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHHHHHHHHhcC
Q 046038 108 VDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFP 187 (265)
Q Consensus 108 ~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~iP 187 (265)
...+++++.+|++.+++++.+|..+.+|++...++++ + .+ +....|.+.|+.+++.+.++|+.+|
T Consensus 305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~P 369 (437)
T KOG1303|consen 305 IALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F------------KK-RSLVLRLLVRTFFVAVTTFVALSFP 369 (437)
T ss_pred HHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c------------cc-cccceeeehhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999987643221 0 01 2246899999999999999999999
Q ss_pred chHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 046038 188 FFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVL-SWTCFIVTLLAAAGSIQGLVKD 254 (265)
Q Consensus 188 ~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i-i~~g~~~~v~Gty~si~~ii~~ 254 (265)
+|+++++++||+...++++++|+++|++.+|+++...+|+++|.+ +++|+++++....+++++++.+
T Consensus 370 fFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 370 FFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999988888999999988 7999999999999999988764
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.97 E-value=1.5e-32 Score=254.67 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=180.6
Q ss_pred chhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccch-hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccc
Q 046038 20 STEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPEN-KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTG 98 (265)
Q Consensus 20 ~~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~-~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~n 98 (265)
...+.++.+.++|+++|||.||.++||+++|||+|+ + +|+.+++..++.+++++|+.+|+.||++||+++++|++.|
T Consensus 187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~--~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n 264 (409)
T PF01490_consen 187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS--KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLN 264 (409)
T ss_pred ccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc--cccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhc
Confidence 345677899999999999999999999999999993 2 3566999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHH
Q 046038 99 FGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVIL 178 (265)
Q Consensus 99 l~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~ 178 (265)
+|.++ +...++++++.++++.+||++.+|+++.+|+.+..+...++. +. + .+...+++|..+|+.+++.
T Consensus 265 ~~~~~--~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~----~----~~~~~~~~~~~~~~~~~~~ 333 (409)
T PF01490_consen 265 LPNDD--VLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRD-SP----K----NTPSSRWLRYLIRIILVLL 333 (409)
T ss_pred CCCcc--cccccccccchhhhhhccccccchhHhhhhhheecccccccc-cc----c----cccccceeeeeeecchhhh
Confidence 98543 678899999999999999999999999999987532000000 00 0 0112357789999999999
Q ss_pred HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 046038 179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWM-----WLQVLSWTCFIVTLLAAAGSI 248 (265)
Q Consensus 179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~-----~~~~ii~~g~~~~v~Gty~si 248 (265)
+.++|+.+|+++++++++||++++.++|++|+++|+|.+++++...+++ +++.++++|++.++.|+|+++
T Consensus 334 ~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 334 SFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999999999999999999999999999999987655333332 356678899999999999876
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.95 E-value=2.1e-27 Score=219.95 Aligned_cols=220 Identities=19% Similarity=0.306 Sum_probs=182.7
Q ss_pred cccCchhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccc
Q 046038 16 VDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNF 95 (265)
Q Consensus 16 ~~~~~~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~i 95 (265)
++..+...+++.+.++++++|||.||.++.++++||||| +++++.++...+...+.++|..+|.+||+.|||++.+|+
T Consensus 185 ~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~ 262 (411)
T KOG1305|consen 185 YLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNL 262 (411)
T ss_pred cccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHH
Confidence 334444455889999999999999999999999999999 568999999999999999999999999999999999999
Q ss_pred ccccCCCCch----HHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHH
Q 046038 96 LTGFGFYEPF----WLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIW 171 (265)
Q Consensus 96 l~nl~~~~~~----~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~ 171 (265)
+.++|..... +....++..+.++++..+|+..+|+|..++..+....++. + +..+.++.++
T Consensus 263 l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~---------~------~~s~~r~~~i 327 (411)
T KOG1305|consen 263 LHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL---------T------SFSGKRHFVI 327 (411)
T ss_pred HhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC---------C------CccceehhHH
Confidence 9999854322 2357899999999999999999999999888764322221 0 1123556788
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046038 172 RTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGL 251 (265)
Q Consensus 172 r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~i 251 (265)
+..++..+.+.|+.+|+++++++++||++++.++|++|+++|++..|+ ++......+...++++.+++.|+..-+.++
T Consensus 328 tl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 405 (411)
T KOG1305|consen 328 TLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDL 405 (411)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998775 223333456667888888888888888777
Q ss_pred HHh
Q 046038 252 VKD 254 (265)
Q Consensus 252 i~~ 254 (265)
..+
T Consensus 406 ~~~ 408 (411)
T KOG1305|consen 406 LAK 408 (411)
T ss_pred Hhc
Confidence 654
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.95 E-value=4.9e-30 Score=225.97 Aligned_cols=223 Identities=18% Similarity=0.259 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCC
Q 046038 22 EKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGF 101 (265)
Q Consensus 22 ~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~ 101 (265)
.++.+++.++|+++|+|..|..+|+++..|++| ++|+..+.++-+.+.++-..+|..||++||+++|..|++|+|.
T Consensus 299 idi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~ 374 (524)
T KOG4303|consen 299 IDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN 374 (524)
T ss_pred EEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc
Confidence 344467789999999999999999999999999 7899999999999999999999999999999999999999993
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCC-Cccc-cchhHHHHHHHHHHHH
Q 046038 102 YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSC-GVCY-VNMFRVIWRTVYVILT 179 (265)
Q Consensus 102 ~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~-~~~~-~~~~r~~~r~~~v~~~ 179 (265)
. ....++|+++++..+.|||+..+.+.+.+|+-+..-.|+.+ .|.+ +.+. .+.+-+.+|..+++.+
T Consensus 375 -q--sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~---------Fpscys~Dg~Lk~WgltlR~~lvvfT 442 (524)
T KOG4303|consen 375 -Q--SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTP---------FPSCYSPDGSLKEWGLTLRIILVVFT 442 (524)
T ss_pred -c--chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCC---------CceeeCCCcchhhheeeeeeHHHHHH
Confidence 2 35778999999999999999999999999987654333322 2211 1121 1234457999999999
Q ss_pred HHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 046038 180 AVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 259 (265)
Q Consensus 180 ~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~ii~~~~~~~ 259 (265)
.++|+.+|+|..+|+|+|++++++++|+.|++||++++++............|++.|..+++.|.|-|..++++++++.-
T Consensus 443 llmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 443 LLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred HHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 99999999999999999999999999999999999998766555555667788999999999999999999999998754
Q ss_pred C
Q 046038 260 P 260 (265)
Q Consensus 260 ~ 260 (265)
+
T Consensus 523 ~ 523 (524)
T KOG4303|consen 523 S 523 (524)
T ss_pred C
Confidence 3
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.57 E-value=5.7e-14 Score=131.35 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCC
Q 046038 22 EKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGF 101 (265)
Q Consensus 22 ~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~ 101 (265)
....+...++|+++|||+||+++|++++||++++ +++.+|+...+..+..++|..+++.+|..+|+++.++++++.++
T Consensus 190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~ 267 (415)
T COG0814 190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ 267 (415)
T ss_pred hhHHHHHHHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc
Confidence 4455678999999999999999999999999984 34599999999999999999999999999999999999999974
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCc--cccCCCCCcccc-chhHHHHHHHHHHH
Q 046038 102 YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRH--PITFPSCGVCYV-NMFRVIWRTVYVIL 178 (265)
Q Consensus 102 ~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~--~~~~p~~~~~~~-~~~r~~~r~~~v~~ 178 (265)
++ .. ..+......+...+++.+.++.+......++.-..-.+.+++.. +...+ ++.+. .........+.+..
T Consensus 268 ~~-~~--l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~i~~l~~ 342 (415)
T COG0814 268 NI-SL--LSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKP--GRKKTGLLTFLPPLIFALLY 342 (415)
T ss_pred hH-HH--HHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcc--cchhhhhhhHHHHHHHHHHH
Confidence 32 21 12223333333455666655555443332221000000000000 00000 00111 12233455556778
Q ss_pred HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 046038 179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGS 247 (265)
Q Consensus 179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~s 247 (265)
....+...|..+.+++.+|+..+..+.++.|...+.+....+....++....+++++|+..++.-.++.
T Consensus 343 ~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 343 PWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999998764322222111345677888888777655544
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.99 E-value=1.1e-08 Score=94.59 Aligned_cols=170 Identities=13% Similarity=0.094 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc-------c---
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG-------N--- 94 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~-------~--- 94 (265)
.+.+.++++..++|++|.+++++.+++++| +|+.+|+...+..++.++|+.+........+.+.-. +
T Consensus 178 ~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~ 254 (381)
T TIGR00837 178 PYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDG 254 (381)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHH
Confidence 357788999999999999999999999876 379999999999999999998865555444333211 1
Q ss_pred cccccCC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHH
Q 046038 95 FLTGFGF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRT 173 (265)
Q Consensus 95 il~nl~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~ 173 (265)
....+.. -+..|...++.++-.++++.|+.-.....+|...+.++.. + + + ..|.....
T Consensus 255 l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~-----~-----------~---~~~~~~~~ 313 (381)
T TIGR00837 255 LVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D-----S-----------K---KGRFKTGL 313 (381)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c-----c-----------c---CCCchhhh
Confidence 1111100 0123456667777788888888777777777766654321 1 0 0 11334455
Q ss_pred HHHHHHHHHHHhcCchH-HHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038 174 VYVILTAVIAMLFPFFN-SVIGLLGAIAFWPLTVYFPVEMYISRAKI 219 (265)
Q Consensus 174 ~~v~~~~~iAi~iP~~~-~vlslvGs~~~~~l~filP~l~yl~~~~~ 219 (265)
+..+...++|...|+.. ..++..| +.++.+.+++|++++++.+|+
T Consensus 314 ~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 314 LTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 66678889999999866 8999999 889999999999999998764
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.80 E-value=3.9e-07 Score=84.90 Aligned_cols=173 Identities=17% Similarity=0.259 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh--hhh---------hhccCC
Q 046038 21 TEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCG--TLG---------YAAFGD 89 (265)
Q Consensus 21 ~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g--~~G---------Y~~fG~ 89 (265)
..+.-..+.++++.++||+.|.++|++.+.+++. .||.+|++..+..+..++|++.- +.| -..-|+
T Consensus 180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~ 256 (394)
T PF03222_consen 180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGG 256 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Confidence 3445557799999999999999999999999864 37899999999999999988762 233 112222
Q ss_pred CCCc--ccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchh
Q 046038 90 KAPG--NFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMF 167 (265)
Q Consensus 90 ~~~~--~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~ 167 (265)
++.+ ..+.+.. + ..+...++.++-.+++..||-=...-.+|.+++.++. +++ ...
T Consensus 257 ~~~~~~~~~~~~~-~-s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~ 313 (394)
T PF03222_consen 257 NVSALVSALANVS-G-SPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSG 313 (394)
T ss_pred ChHHHHHHHHhhc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccc
Confidence 2221 1222222 1 2355667778888888888855555677777766532 110 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc
Q 046038 168 RVIWRTVYVILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKIR 220 (265)
Q Consensus 168 r~~~r~~~v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~~ 220 (265)
|...-.+..+...++|+..|+ |-..+++.| ...+.+..++|+++.+|.++++
T Consensus 314 r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 314 RLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred hHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 333344456678889999996 889999999 9999999999999999987543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.62 E-value=1.5e-06 Score=81.13 Aligned_cols=189 Identities=12% Similarity=0.135 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Cc-----ccc
Q 046038 27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKA-----PG-----NFL 96 (265)
Q Consensus 27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~-----~~-----~il 96 (265)
++.+++++.+||+.|.++|++.+.+++. .+|.+|++..+..+..++|+..=......-+.+. ++ +++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 7789999999999999999999999764 3789999999999999999887544444333321 11 223
Q ss_pred cccCC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHH
Q 046038 97 TGFGF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVY 175 (265)
Q Consensus 97 ~nl~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~ 175 (265)
..+.. -+..|...++.++..+++..||-=.....+|.+...+.. +++ ...|...-.+.
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~--~~~-------------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR--RNT-------------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--Ccc-------------------ccCCchhehhh
Confidence 32221 012366677777777888888855555667776665431 110 11244455667
Q ss_pred HHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc-ccch----hHHHHHHHHHHHHHHH
Q 046038 176 VILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKIR-KFSV----TWMWLQVLSWTCFIVT 240 (265)
Q Consensus 176 v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~~-~~~~----~~~~~~~ii~~g~~~~ 240 (265)
.+..+++|+..|+ |...+++.|.. .+.+.+++|+++-+|.++.+ .... ....+++++++|++..
T Consensus 319 flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i 388 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVI 388 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHH
Confidence 7889999999996 88899998864 78999999999999887533 1111 2234455566665543
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.48 E-value=6.9e-06 Score=76.74 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhc-----------cCCCCCcc
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAA-----------FGDKAPGN 94 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~-----------fG~~~~~~ 94 (265)
..+.++++++++|+.|.++|++.+.+++. .+|.+|++..+..+..++|+..=...-.. -|++++ .
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~ 268 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-V 268 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-H
Confidence 36689999999999999999999998863 37999999999999999999842222221 222221 1
Q ss_pred cccccCC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHH
Q 046038 95 FLTGFGF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRT 173 (265)
Q Consensus 95 il~nl~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~ 173 (265)
.+..+.. -+..+...++.++..+++..||-=.....+|.++..++. +++ ...|...-.
T Consensus 269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~-------------------~~~r~~~~~ 327 (414)
T PRK10483 269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS-------------------AMGRFKTAL 327 (414)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeeh
Confidence 1122211 012255566777777888888855555667777766532 110 012233344
Q ss_pred HHHHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038 174 VYVILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKI 219 (265)
Q Consensus 174 ~~v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~ 219 (265)
+..+-..++|+..|+ |=.-++..|.. .+.+.-++|+++-.+.||+
T Consensus 328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 567889999999996 88899999977 6788899999999998864
No 13
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.32 E-value=3.1e-05 Score=72.72 Aligned_cols=203 Identities=11% Similarity=0.082 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhh----c---CCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Cc
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTL----R---SSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKA-----PG 93 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~m----k---~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~-----~~ 93 (265)
.+..++++++|+|+-|+++|+....+ + +++...+|-+|++..+..+..++|+..-+..-..-+++. ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46789999999999999999998884 3 222124789999999999999999998776666655442 12
Q ss_pred cc--ccc----cCCC-Cc-----hHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcc-cCCCCccCCCCccccCCCCC
Q 046038 94 NF--LTG----FGFY-EP-----FWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCH-KWPESGFVTKRHPITFPSCG 160 (265)
Q Consensus 94 ~i--l~n----l~~~-~~-----~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~-~~~~~~~i~~~~~~~~p~~~ 160 (265)
|+ +.. ++.. +. .++..+..++..+++..||-=....++|.++.+... ..+. +++ +
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~----~~~---~----- 357 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKG----DKT---K----- 357 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccc---c-----
Confidence 22 221 2210 00 234555666666777788855556778888877621 1111 000 1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Q 046038 161 VCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT 240 (265)
Q Consensus 161 ~~~~~~~r~~~r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~ 240 (265)
.+.+..+.+...++++.+++.|+.=|++=.++.-+|+-....+.|++|...-+|.-.-++.+ .+..|+++++.|++..
T Consensus 358 -~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i 435 (443)
T PRK13629 358 -VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTI 435 (443)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHH
Confidence 11234556677778899999999999999999988888888999999998887763211111 1224678888887754
Q ss_pred HH
Q 046038 241 LL 242 (265)
Q Consensus 241 v~ 242 (265)
..
T Consensus 436 ~~ 437 (443)
T PRK13629 436 LN 437 (443)
T ss_pred HH
Confidence 33
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.32 E-value=6.4e-06 Score=76.87 Aligned_cols=180 Identities=11% Similarity=0.086 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhh----hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCC-----cc
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQ----DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAP-----GN 94 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~----~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~-----~~ 94 (265)
..++..++++..+||.+|.++++.. ++.++|+.+.+|-+|++..+..+..++|+..-+..-...+.+.- +|
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 4568899999999999999999997 33443432357899999999999999999887777766665431 22
Q ss_pred --cccccC-CCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHH
Q 046038 95 --FLTGFG-FYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIW 171 (265)
Q Consensus 95 --il~nl~-~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~ 171 (265)
.+..+. ..+..+...+..++-.+.+..||-=....++|.++..+....+. +++ + .+++..+...
T Consensus 265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~----~~~---~------~~~~~~~~~~ 331 (397)
T TIGR00814 265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM----KGK---K------INIRKLNRAI 331 (397)
T ss_pred cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc----ccc---c------cCHHHHHHHH
Confidence 111111 00112455566666677788888777778888888876211111 000 0 1123445566
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 046038 172 RTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISR 216 (265)
Q Consensus 172 r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~ 216 (265)
..++++.++..|+.=|++=.+++-+|+-....+.|++|...-.|.
T Consensus 332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 677888999999999999999997788888899999999887776
No 15
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.32 E-value=2.7e-05 Score=72.81 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhh--hhhh---------hhccCCCCCcc
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLC--GTLG---------YAAFGDKAPGN 94 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~--g~~G---------Y~~fG~~~~~~ 94 (265)
.++.+++++.++|+.|+++|++.+.+++. .+|.+|++.....+..++|... .+.| -.+-|++++.-
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 36679999999999999999999998854 3678888888888888888654 2222 12233333331
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHH
Q 046038 95 FLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTV 174 (265)
Q Consensus 95 il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~ 174 (265)
+..-....+..+...++.++..+++..||-=.....+|.+...++. +++ ...|...-.+
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~-------------------~~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNS-------------------HGGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehh
Confidence 1111110112366777778888888888855555667777665532 111 0123333445
Q ss_pred HHHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038 175 YVILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKI 219 (265)
Q Consensus 175 ~v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~ 219 (265)
..+...++|+..|+ |=.-++..|.. .+.+.-++|+++-.|.||+
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 67888999999997 88899999996 6688899999999998864
No 16
>PRK11021 putative transporter; Provisional
Probab=97.88 E-value=0.0021 Score=59.97 Aligned_cols=57 Identities=12% Similarity=0.339 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
.+.+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|......
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 344577889999999999999999999999993 689999999999999999998654
No 17
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.67 E-value=0.0027 Score=60.55 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=42.4
Q ss_pred HHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 33 NIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 33 i~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
.+.|+|.|-......-+|+|||. |+.+|++..+..++.++|....+.-..
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~ 251 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAF 251 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999993 789999999999999999876554333
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=97.65 E-value=0.0039 Score=58.66 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY 84 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY 84 (265)
.....++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|++......
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999999999999999993 68999999999999999998765443
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.59 E-value=0.0068 Score=57.23 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG 83 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G 83 (265)
.+..++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|.++.+.-
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999999993 6899999999999999999887653
No 20
>PRK10746 putative transport protein YifK; Provisional
Probab=97.54 E-value=0.0082 Score=57.14 Aligned_cols=56 Identities=13% Similarity=0.005 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
+..+..++....|+|.|--.....-.|+||| +|+.+|+...++....++|+.....
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446689999999999999999999999999 3789999998888888888876443
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.50 E-value=0.0092 Score=56.26 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 046038 23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAF 87 (265)
Q Consensus 23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~f 87 (265)
...++..++....|+|.|-......-+|+|||. |+.+|++..+..++.++|+...+.-....
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999999993 68999999999999999999876544333
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=97.48 E-value=0.0074 Score=58.07 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAA 86 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~ 86 (265)
+...+.++...+|+|.|-......-+|+|||+ |+.+|++..++....++|+.....-...
T Consensus 219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 33455667789999999999999999999993 6799999999998888888875544333
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=97.48 E-value=0.0095 Score=56.59 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG 83 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G 83 (265)
.+..++....|+|.|-......-+|+|||. |+.+|++..++....++|......-
T Consensus 210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 210 GLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999993 6899999999999999998754433
No 24
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.44 E-value=0.0076 Score=57.05 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
+.+...++....|+|.|-......-.|+||| +|+.+|++..++..+.++|+...+.
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999 2689999999999999999986554
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.39 E-value=0.015 Score=55.38 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY 84 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY 84 (265)
...+.++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|......-+
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 3577899999999999999999999999992 68999998777777888887665544
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.31 E-value=0.016 Score=55.04 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhh
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLC 79 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~ 79 (265)
....+++...|+|.|--.....-+|+|||+ |+.+|++..++....++|+..
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999999999999993 689999988888888777654
No 27
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.25 E-value=0.02 Score=54.23 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
..+.++....|+|.|-......-+|+||| +|+.+|+...+.....++|......
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999 2679999998888788888777543
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.23 E-value=0.027 Score=53.59 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG 88 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG 88 (265)
.+..++....|+|.|-.....+-+|+|++ |+.+|++..++..+.++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 35578889999999988888888888865 899999999999999999998876665444
No 29
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.16 E-value=0.012 Score=55.64 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG 83 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G 83 (265)
+.+.+.++....|+|.|-......-+|+|||+ |+.+|++..++.++.++|+......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999993 6899999999999999998876543
No 30
>TIGR00909 2A0306 amino acid transporter.
Probab=97.15 E-value=0.027 Score=52.78 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY 84 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY 84 (265)
....+.++....|+|.|........+|+|||. |+.+|++..++.++.++|+.......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999999999992 68999999999999999999865544
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.14 E-value=0.023 Score=54.08 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG 83 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G 83 (265)
....+.++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|+...+..
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999993 6899999999999999999886543
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.11 E-value=0.034 Score=51.86 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
.+.+++...|+|.|-......-+|+|| |+.+|++..++.++.++|......-....+++
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence 568889999999999999999999774 68999999999999999999976666555553
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.10 E-value=0.059 Score=51.29 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
+.+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|+...+.
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999993 789999999999999999987543
No 34
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.06 E-value=0.028 Score=53.66 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCG 80 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g 80 (265)
+..+.++-...|+|.|-......-+|+||| +|+.+|++..+..++.+++....
T Consensus 217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred hhhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence 345566666789999999999999999999 37899999999887776544433
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.02 E-value=0.019 Score=56.05 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
+.+++.+.....|+|.|-......-+|+|||. |+.+|++..++.++.++|..+.+.
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999993 689999999999999999988654
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.01 E-value=0.022 Score=53.64 Aligned_cols=55 Identities=5% Similarity=-0.077 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT 81 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~ 81 (265)
+...+.++....|+|.|.......-+|+|||+ |+.+|++..+..++.++|...-+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999999993 68999999999999888877644
No 37
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.91 E-value=0.062 Score=50.82 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY 84 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY 84 (265)
.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+......+|+.......
T Consensus 201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 3577899999999999999999999999993 68999998888888888888654433
No 38
>PRK10836 lysine transporter; Provisional
Probab=96.88 E-value=0.076 Score=50.88 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
..+.+.....|+|.|-......-+|+|||+ |+.+|++..++..+.++|+.....-..
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 344556667799999999999999999993 789999999999999999988654333
No 39
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.82 E-value=0.092 Score=50.03 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
...+..++....|+|.|-......-+|+|| + |+.+|++..+..++.++|+........
T Consensus 198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888999999999999999999998 3 899999999999999999988665443
No 40
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.81 E-value=0.068 Score=51.27 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT 81 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~ 81 (265)
..+.++....|+|.|-......-+|+|||+ |+.+|+...+...+.++|.+..+
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999993 68999999999999999998644
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.73 E-value=0.022 Score=54.14 Aligned_cols=177 Identities=12% Similarity=0.133 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccc------
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGF------ 99 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl------ 99 (265)
+.-.++=.-.|||.|=..+=-+..|+||| +|.+|+++..++.+++++|+++=+..+..-- .+.++.+-
T Consensus 205 ~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~F 278 (479)
T KOG1287|consen 205 NIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTF 278 (479)
T ss_pred HHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHH
Confidence 45567777889998888888899999999 3789999999999999999998766554431 12222211
Q ss_pred CC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHH
Q 046038 100 GF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVIL 178 (265)
Q Consensus 100 ~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~ 178 (265)
.+ -.+.+. -++-++..++.+.+.--.++..-..+...- ++ .|+.+-.+.+ .+++. ..+ ...++..+
T Consensus 279 a~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~a----re-G~LP~~~s~i----~~~~~-TP~--~allf~~~ 345 (479)
T KOG1287|consen 279 ADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGA----RE-GHLPAFFSMI----SVRRF-TPR--PALLFSGL 345 (479)
T ss_pred HHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH----Hc-cCccHHHHhh----cCCCC-CCh--HHHHHHHH
Confidence 00 001121 122233333333333211111111111110 01 0111000000 00110 011 12333345
Q ss_pred HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccc
Q 046038 179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRK 221 (265)
Q Consensus 179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~ 221 (265)
..++...+.|++.+++.++=.......+.+=+++|+|.++++.
T Consensus 346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5555666679999999999888888899999999999887653
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.63 E-value=0.047 Score=52.42 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY 84 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY 84 (265)
..+...++....|+|.|-......-.|+|||. |+.+|++..+..++.++|++..+.-.
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999993 68999999999999999999865443
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.60 E-value=0.075 Score=49.90 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGD 89 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~ 89 (265)
....+++...++|.|-......-+|+|||. |+.+|++..++..+.++|+...+.-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 577889999999999999999999999992 6799999999999999999998877777765
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.60 E-value=0.34 Score=50.40 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038 27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~ 82 (265)
++..++++.+||.|-.....+-.|+|+|. +..+++...++.+++++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888889999888888999999993 689999999999999999999763
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.45 E-value=0.53 Score=44.89 Aligned_cols=61 Identities=13% Similarity=-0.057 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG 88 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG 88 (265)
+..+.+.-...|+|.|-.....+-+|+|||+ |+.+|++..+..+..++|...-+......+
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3455667778899999999999999999993 789999999999887766555444333333
No 46
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.32 E-value=0.27 Score=47.42 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 046038 27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCG 80 (265)
Q Consensus 27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g 80 (265)
....+..+.|+|.|--.....-+|||||+ |+++|++..+..++.++|....
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 33444556899999999999999999993 6899999999999898887644
No 47
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=93.60 E-value=0.097 Score=49.86 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
.+-+++.++....++|.|-......-+|.||| +|+.+|+...++....++|+......=...|.+
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 45678899999999999999999999999999 378999999999999999998866544444443
No 48
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=93.15 E-value=1.1 Score=42.37 Aligned_cols=177 Identities=14% Similarity=0.164 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHH-----HHhhhhhhhhccCCCCCcc--cc
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIF-----YMLCGTLGYAAFGDKAPGN--FL 96 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~-----y~~~g~~GY~~fG~~~~~~--il 96 (265)
+..++.++-+.+|||++.-.+=---+|-|||+ |..+|+.+.-..=..++ ..+..+.-|-.++++.++= ++
T Consensus 202 ~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f 278 (462)
T COG1113 202 FLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVF 278 (462)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHH
Confidence 33578899999999999877776778999993 56888765544444444 4455777777777755542 22
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcc-cCCCCccCCCCccccCCCCCccccchhHHHHHHHH
Q 046038 97 TGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCH-KWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVY 175 (265)
Q Consensus 97 ~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~-~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~ 175 (265)
..+.. | +...+.|..+..+.+.+.==-.+..-+.+..+-.+ .-|+ ...+.++..-...-++...+.
T Consensus 279 ~~iGi--~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk----------~~~klsk~gVP~~ai~~s~~~ 345 (462)
T COG1113 279 SLIGI--P-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK----------AFAKLSKRGVPVNAILLSAVV 345 (462)
T ss_pred HHcCC--c-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccH----------hHhhccccCCCHHHHHHHHHH
Confidence 22211 1 22333333333333333211111222222222110 0011 000011111112334677777
Q ss_pred HHHHHHHHHhcCc--hHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 046038 176 VILTAVIAMLFPF--FNSVIGLLGAIAFWPLTVYFPVEMYISRAK 218 (265)
Q Consensus 176 v~~~~~iAi~iP~--~~~vlslvGs~~~~~l~filP~l~yl~~~~ 218 (265)
..++.++....|. |+.+.+..+... .....+=.+.|+|++|
T Consensus 346 ~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk 388 (462)
T COG1113 346 LLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 7888889999992 444444433322 3344445567888776
No 49
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.28 E-value=2.3 Score=38.72 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=48.5
Q ss_pred HHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc
Q 046038 32 GNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG 93 (265)
Q Consensus 32 gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~ 93 (265)
....++|.+.....-...++|+| ++.+|+...+..++.++|...-+..-..+|.+..+
T Consensus 186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~ 243 (359)
T TIGR00912 186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTK 243 (359)
T ss_pred HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhh
Confidence 36788888877778888889887 78999999999999999999888888888865443
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=90.40 E-value=1.7 Score=42.43 Aligned_cols=176 Identities=12% Similarity=0.049 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh-hhhhccCCC--CCcccccccC
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT-LGYAAFGDK--APGNFLTGFG 100 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~-~GY~~fG~~--~~~~il~nl~ 100 (265)
+.+++.++-+..|+|.|--.+-.--+|-||| +|..|++...++..+.++|+...+ +|-..=-++ ..++....-|
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp 307 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP 307 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence 4557789999999999988888888999999 378999999999999999999875 343333333 3322211111
Q ss_pred CC---CchHHHH---HHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCC-CccccchhHHHHHH
Q 046038 101 FY---EPFWLVD---FANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSC-GVCYVNMFRVIWRT 173 (265)
Q Consensus 101 ~~---~~~~~~~---i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~-~~~~~~~~r~~~r~ 173 (265)
.. +..+... +.++..++.++.+---..++.-+.+..+-...+ .|++ ++-.++-.-+.-..
T Consensus 308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~-------------~Pk~f~~v~~~g~P~~a~~ 374 (554)
T KOG1286|consen 308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGL-------------APKFFARVDRRGVPLVAVL 374 (554)
T ss_pred HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCC-------------cchHHhhcCCCCCchhHHH
Confidence 00 0011222 556666666655554455555555555532110 1110 00000101122223
Q ss_pred HHHHHHHHHHHhcCc-----hHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 046038 174 VYVILTAVIAMLFPF-----FNSVIGLLGAIAFWPLTVYFPVEMYISRA 217 (265)
Q Consensus 174 ~~v~~~~~iAi~iP~-----~~~vlslvGs~~~~~l~filP~l~yl~~~ 217 (265)
+.-++..+.++.... ++.++++.|--+ .+++.+=++.|+.++
T Consensus 375 v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 375 VSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRFR 421 (554)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeeee
Confidence 333444455554443 688888876544 556666666666554
No 51
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=82.99 E-value=2.7 Score=36.36 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHh---------hhhhhhhHHHHHHHHHHHHHhccc-----ccchhHHHHHHHHHHHHHH
Q 046038 174 VYVILTAVIAMLFPFFNSVIGLL---------GAIAFWPLTVYFPVEMYISRAKIR-----KFSVTWMWLQVLSWTCFIV 239 (265)
Q Consensus 174 ~~v~~~~~iAi~iP~~~~vlslv---------Gs~~~~~l~filP~l~yl~~~~~~-----~~~~~~~~~~~ii~~g~~~ 239 (265)
...+..+++|..++.+|-++... ||.++--|+++= |..+-+.+ ....++|+-|+++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 34556777888888888877765 777777777665 55443321 1122455667888999999
Q ss_pred HHHHHHH--HHHHHHHhc
Q 046038 240 TLLAAAG--SIQGLVKDL 255 (265)
Q Consensus 240 ~v~Gty~--si~~ii~~~ 255 (265)
.+-|++. .|+.+-+.+
T Consensus 237 ~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHhHHHHhhHHHHH
Confidence 8888765 344444443
No 52
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=74.59 E-value=45 Score=32.52 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc
Q 046038 23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG 93 (265)
Q Consensus 23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~ 93 (265)
+-|....++-.-+.++.|--....+-+|-||++ ++-+|....+..+..++-..+-+.-..+-++|.+.
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~ 317 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDA 317 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 567777778888888888888889999999994 68899988888888877666655555566654443
No 53
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=70.24 E-value=65 Score=28.18 Aligned_cols=46 Identities=2% Similarity=0.016 Sum_probs=31.4
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccC
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFG 100 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~ 100 (265)
+.+++| ++.+....-+.+..+++...-..++..+++.+ +.++..+|
T Consensus 19 ~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 19 KLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 566776 79999999999999988887555555555432 44444444
No 54
>PRK12768 CysZ-like protein; Reviewed
Probab=67.44 E-value=65 Score=28.03 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=25.0
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG 88 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG 88 (265)
+++.+| ++++++..+...+..++..++..-.+.++
T Consensus 10 ~ql~~~-----~~r~vl~~~~~lt~~l~~~~~~~~~~~~~ 44 (240)
T PRK12768 10 ARLLSP-----PMRSVFWKVLGLTLLLLVVLWFALRRLFS 44 (240)
T ss_pred HHhCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567776 79999999999988888887533333333
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=62.12 E-value=1.4e+02 Score=28.08 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHH-HHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhc----cCCCCC
Q 046038 21 TEKIWSSLQAIGNI-AFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAA----FGDKAP 92 (265)
Q Consensus 21 ~~~~~~~~~~~gi~-~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~----fG~~~~ 92 (265)
+...+..+.+++.. .+.-..-.+.+...+.+|+| ++-.+....++....+....+|+.+-.. +|+...
T Consensus 203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 203 STGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 33455555554442 22234455788899999987 4444556667777777777887777665 876543
No 56
>PRK11375 allantoin permease; Provisional
Probab=57.42 E-value=1.8e+02 Score=27.88 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhc-CccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh----hhccCCCC
Q 046038 24 IWSSLQAIGNIAFAYA-YSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG----YAAFGDKA 91 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~-~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G----Y~~fG~~~ 91 (265)
.|....++...+=++. ...+.|..-+-.|+| ++-.+....++.+..++...+|++. ...||+..
T Consensus 226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 226 GFLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444444433222333 345788888888887 4555555556666666655455433 45666654
No 57
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=55.94 E-value=17 Score=32.59 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc
Q 046038 21 TEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG 93 (265)
Q Consensus 21 ~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~ 93 (265)
+....+.+.+.-...+.|.+-....-+...+|+| ++..|....+..++.++|...-+..-..||.+..+
T Consensus 171 ~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~ 239 (320)
T PF03845_consen 171 ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPELAK 239 (320)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 4445567777777778888777777788899987 78899999999999999998888888888876443
No 58
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=55.88 E-value=39 Score=24.51 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccc
Q 046038 25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNF 95 (265)
Q Consensus 25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~i 95 (265)
++.....|++..+-.|...+.+..+.=.+|+ ..-.|++.. +.+..-.-+.+|++.|..|| ...++.
T Consensus 11 ~s~vli~GIiLL~~ACIFAfidFSK~~s~~~---~~~wRalSi-i~FIlG~vl~lGilifs~y~-~C~~~~ 76 (91)
T PHA02680 11 YSGVLICGVLLLTAACVFAFVDFSKNTSNVT---DYVWRALSV-TCFIVGAVLLLGLFVFSMYR-KCSGSM 76 (91)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhccCCCCc---chhHHHHHH-HHHHHHHHHHHHHHHHHHhc-ccCCCc
Confidence 3445567888888888888887777665663 223333332 33444445677889999998 666533
No 59
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=54.52 E-value=15 Score=23.27 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 046038 61 MKRASFVGVSITTIFYMLCGTLGYAAFGDKA 91 (265)
Q Consensus 61 ~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~ 91 (265)
|..+...++.+..++..+.|..-|.+||..-
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4556677778888888888888889999753
No 60
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=53.58 E-value=63 Score=26.10 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
|+..|.+....-...++..++|+..-..+-++. ++ .|+- +-.+|+-.+..+++.+|-+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fy-SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMY-SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 667888888888888888888877655554443 22 2332 12468888888889999999988887775
No 61
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=52.36 E-value=2.2e+02 Score=29.41 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh-hhh--------hccCCCCCcccc
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT-LGY--------AAFGDKAPGNFL 96 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~-~GY--------~~fG~~~~~~il 96 (265)
.+..-+|++.=|-.|...=-.--.++||| +|..+--...|.+.++.+|..-.+ +|- --||+.+.++..
T Consensus 411 SFtlLvgIfFPsVTGImaGSNrSGDLkDa---QkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lV 487 (1075)
T KOG2082|consen 411 SFTLLVGIFFPSVTGIMAGSNRSGDLKDA---QKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLV 487 (1075)
T ss_pred hHHHHHHhhccccceeeecCCCCccccch---hhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEE
Confidence 34455666666665554444445688988 356888888888888888875533 222 237777777655
Q ss_pred c---ccCCCCchHHHHHH----HHHHHHHHHhhhhhhc
Q 046038 97 T---GFGFYEPFWLVDFA----NMCIVVHLVGAYQVFC 127 (265)
Q Consensus 97 ~---nl~~~~~~~~~~i~----~i~~~l~~l~s~pl~~ 127 (265)
. +.|. | |...+. -....++.+++.|=..
T Consensus 488 va~laWPs--P-wVi~IGsFlST~GAgLQsLtgAPRLL 522 (1075)
T KOG2082|consen 488 VATLAWPS--P-WVIVIGSFLSTCGAGLQSLTGAPRLL 522 (1075)
T ss_pred EEEecCCC--c-eeeehhHHHHHhHHHHhhhcCcHHHH
Confidence 3 2241 1 533322 2234555566655443
No 62
>CHL00020 psbN photosystem II protein N
Probab=50.52 E-value=14 Score=23.11 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 64 ASFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 64 vl~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
+...++.+..++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455667777777778888888899975
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=49.58 E-value=2e+02 Score=26.60 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=23.0
Q ss_pred hhhhhcCCccchhhhhHHHHHHHHHHHHHHHhh---hhhhhhccC
Q 046038 47 IQDTLRSSPPENKVMKRASFVGVSITTIFYMLC---GTLGYAAFG 88 (265)
Q Consensus 47 I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~---g~~GY~~fG 88 (265)
.|+-+.-++ .|+.+|....+.......+... |+.++..|.
T Consensus 223 ~qR~~a~ks--~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 223 VQRCLAAKS--AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred hhHHHhcCC--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455554442 2678888777766555555444 555555553
No 64
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=49.09 E-value=2.7e+02 Score=27.33 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhh
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLC 79 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~ 79 (265)
+.++...+-+..|+|+|.-.+----.|-+||. |..||+....+-=..++|+..
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~s 285 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILS 285 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHH
Confidence 55677888899999999877776777889993 679999888877777777654
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=48.90 E-value=1.4e+02 Score=27.56 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHH
Q 046038 175 YVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMY 213 (265)
Q Consensus 175 ~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~y 213 (265)
+.++..++|...|+.+ +..+..-..+....-.+|+++-
T Consensus 350 ~~~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PF00474_consen 350 IGIIAILLALFFPDSG-IIDLILFAFGILAAPFFPPLLL 387 (406)
T ss_dssp HHHHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHHHH
T ss_pred eHHhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777743 4444444443333445565543
No 66
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=45.54 E-value=19 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 65 SFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 65 l~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
...++.+..++-.+.|..-|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34566777777778888889999864
No 67
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=41.30 E-value=3.2e+02 Score=25.90 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038 165 NMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKI 219 (265)
Q Consensus 165 ~~~r~~~r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~ 219 (265)
+.+|...|.+..+.+.++.+.+-+.+.++.+.+.+.+..+-+..++++.+..+|+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 4567778877666666555555599999999999988888888777777765553
No 68
>PHA03048 IMV membrane protein; Provisional
Probab=40.18 E-value=70 Score=23.35 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcc
Q 046038 26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGN 94 (265)
Q Consensus 26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~ 94 (265)
+.....|++..+-.|...+.+..+. +|+ ..-.|++.. +.+..-.-+.+|.+-|..||....++
T Consensus 12 S~vli~GIiLL~~aCIfAfidfsK~--k~~---~~~wRalsi-i~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 12 STALIGGIILLAASCIFAFVDFSKN--KAT---VTVWRALSG-IAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcC--CCc---chhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3445678888888887788777777 342 233333333 34444456678999999999887765
No 69
>PRK11281 hypothetical protein; Provisional
Probab=38.77 E-value=5.2e+02 Score=27.90 Aligned_cols=29 Identities=10% Similarity=0.191 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 046038 61 MKRASFVGVSITTIFYMLCGTLGYAAFGD 89 (265)
Q Consensus 61 ~~~vl~~a~~i~~~~y~~~g~~GY~~fG~ 89 (265)
=++++.+++..+....+.+..+||+.+..
T Consensus 542 T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 542 TPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777777777788888899988764
No 70
>PLN02351 cytochromes b561 family protein
Probab=38.37 E-value=1.3e+02 Score=26.29 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=47.4
Q ss_pred hhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhh
Q 046038 47 IQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVF 126 (265)
Q Consensus 47 I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~ 126 (265)
+++.++.+ ++.+|.+....-...++..++|+.. .|-+ +++...|+- +-.+|+-..+-+++.+|-+..+..+
T Consensus 72 vYR~~~~~----~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~--~~~~i~nly-SLHSWlGl~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 72 VHRWLPGS----RKTKKSVHLWLQGLALASGVFGIWT--KFHG--QDGIVANFY-SLHSWMGLICVSLFGAQWLTGFMSF 142 (242)
T ss_pred Hhhccccc----chHHHHHHHHHHHHHHHHHHHHHHH--HHhc--ccCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555544 4568888887777777777777766 3322 223444442 1246877777778888888887666
Q ss_pred cccH
Q 046038 127 CQPI 130 (265)
Q Consensus 127 ~~p~ 130 (265)
..|.
T Consensus 143 ~~P~ 146 (242)
T PLN02351 143 WHRG 146 (242)
T ss_pred hcCC
Confidence 5553
No 71
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=34.90 E-value=3.7e+02 Score=24.84 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=34.4
Q ss_pred cchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 046038 42 IVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGD 89 (265)
Q Consensus 42 ~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~ 89 (265)
...++..+-.|+| +|..+....+..+...+...+|...-.+.|+
T Consensus 190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3478888888876 6777777778888888999999877777665
No 72
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=34.42 E-value=2.3e+02 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046038 230 QVLSWTCFIVTLLAAAGSIQGLVKDL 255 (265)
Q Consensus 230 ~~ii~~g~~~~v~Gty~si~~ii~~~ 255 (265)
..+++.|++++.+|.+-+++.-.+.+
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777777777777777766654
No 73
>PLN02680 carbon-monoxide oxygenase
Probab=34.41 E-value=2.2e+02 Score=24.68 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
|+.+|.+...+=...++...+|+..-..+-++. ++ .|+- +-.+|+-..+.+++.+|.+..+..+..|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfy-SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFY-SLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 678888888888888888888886654444432 33 3332 12468887788888888888887766663
No 74
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=31.57 E-value=1.9e+02 Score=25.23 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCC
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYE 103 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~ 103 (265)
-+|.=--+.++-|-|- ++...-+|+.-+. ++|+.+|.+....=++.+...++|+..-..+-++.. ..|+- +-
T Consensus 54 ~fnlHP~lMviGfI~l-~GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~Nfy-SL 125 (245)
T KOG1619|consen 54 EFNLHPVLMVIGFIYL-QGEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFY-SL 125 (245)
T ss_pred hcCcchHHHHHHHHHh-ccceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cccee-eH
Confidence 3343334555666664 4555557776343 348999999999999999999999888877766655 33432 12
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 104 PFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 104 ~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
.+|+-..+-+++.+|-+.++--+.+|.
T Consensus 126 HSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 126 HSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 469877777888888888877666554
No 75
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.68 E-value=2.6e+02 Score=22.24 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
||.+|.+...+-....+..++|+..-..+-++. .+- |+- +-.+|+-.++.+++.++.+..+..+..|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~-~~~-SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIP-NLY-SLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Ccc-ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667788888888888888888875544444433 222 221 12368877787888888888876666664
No 76
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=28.11 E-value=2e+02 Score=20.63 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhcccc--cchhHHHHH
Q 046038 194 GLLGAIAFWPLTVYFPVEMYISRAKIRK--FSVTWMWLQ 230 (265)
Q Consensus 194 slvGs~~~~~l~filP~l~yl~~~~~~~--~~~~~~~~~ 230 (265)
++++.+.+..++++.|+.--+|.-+.+. ...+|...|
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YW 40 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYW 40 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4667788889999999988887754332 233454445
No 77
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=27.98 E-value=3.6e+02 Score=23.34 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=49.8
Q ss_pred CCcccccccceeeccccCchhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHH-HHHHHHHHHhhh
Q 046038 2 GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVG-VSITTIFYMLCG 80 (265)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a-~~i~~~~y~~~g 80 (265)
+++.+..-.+||||+..+-.-+ . .++..+..|..|..+.|+.. +| .-....+.-+ ..++..-|.-+.
T Consensus 117 ~~~~~~~~~~VEW~Y~FDVHcN---a--Ffp~~~~Lyv~Q~~LlP~l~---~~----~~~~~~~gNtLy~va~~yY~YiT 184 (231)
T PF05216_consen 117 SSHSHSVEQDVEWGYCFDVHCN---A--FFPLFVLLYVLQFFLLPLLL---KP----SFLSLLLGNTLYLVAIGYYFYIT 184 (231)
T ss_pred cCCCCCcCCceEEEEeeecchh---h--HHHHHHHHHHHHHHHHHHHh---cc----chHHHHHhHHHHHHHHHHHHHHH
Confidence 4577788889999887443322 2 37778888888989888877 33 3344444333 445555678888
Q ss_pred hhhhhccC
Q 046038 81 TLGYAAFG 88 (265)
Q Consensus 81 ~~GY~~fG 88 (265)
..||.+-.
T Consensus 185 FLGY~~LP 192 (231)
T PF05216_consen 185 FLGYSALP 192 (231)
T ss_pred HHhhccCc
Confidence 88886543
No 78
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=27.72 E-value=1.5e+02 Score=19.58 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046038 226 WMWLQVLSWTCFIVTLLAAAGSIQGLVKD 254 (265)
Q Consensus 226 ~~~~~~ii~~g~~~~v~Gty~si~~ii~~ 254 (265)
..+.|+..+++.+-++.|.|-++++-++.
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk~IRnY~r~ 34 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYKVIRNYFRR 34 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34567888899999999999999988654
No 79
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=26.91 E-value=4.2e+02 Score=23.83 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046038 230 QVLSWTCFIVTLLAAAGSIQGLVKDL 255 (265)
Q Consensus 230 ~~ii~~g~~~~v~Gty~si~~ii~~~ 255 (265)
..++.+|++++..|.+-+++.-.+.+
T Consensus 281 ~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 281 GLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888888887776665
No 80
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=26.43 E-value=5.6e+02 Score=25.51 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=53.1
Q ss_pred CCcccccccce-eeccccCchhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHH---HH
Q 046038 2 GNHVTTSLTGV-AIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIF---YM 77 (265)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~---y~ 77 (265)
+...+|+++-+ ++..|++-....|..+.+-.....++-| .+-.-+|+-|.-|+ .|+-++.+........+. +.
T Consensus 215 ~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~-vnQ~~VQR~lsl~s--lk~ak~~~~~~~~~~~l~~~~~~ 291 (585)
T KOG2349|consen 215 KAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYG-VNQLIVQRYLSLPS--LKHAKPSLLLFGYGVLLIMFIMV 291 (585)
T ss_pred ecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHh-hhHHHHhHHhcccc--HHHhhhhhhhhhhHHHHHHHhhc
Confidence 45667888888 7999999999999976554444444433 33444788887774 355566555544444333 44
Q ss_pred hhhhhhhhcc
Q 046038 78 LCGTLGYAAF 87 (265)
Q Consensus 78 ~~g~~GY~~f 87 (265)
..|..-|..|
T Consensus 292 ~~G~i~~~~Y 301 (585)
T KOG2349|consen 292 FVGMIIYALY 301 (585)
T ss_pred ccceeEeeec
Confidence 4466667666
No 81
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=26.30 E-value=1.3e+02 Score=22.82 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=8.9
Q ss_pred HHHHHhcccccCCCC
Q 046038 249 QGLVKDLQTYKPFSS 263 (265)
Q Consensus 249 ~~ii~~~~~~~~f~~ 263 (265)
+.+.+++++.++|++
T Consensus 44 ~~ll~~i~~~~~Fs~ 58 (136)
T PF11188_consen 44 RRLLRNIQKGKPFSP 58 (136)
T ss_pred HHHHHHHHCCCcchH
Confidence 555666666566664
No 82
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=26.21 E-value=2.8e+02 Score=22.34 Aligned_cols=61 Identities=8% Similarity=-0.105 Sum_probs=35.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhcccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046038 194 GLLGAIAFWPLTVYFPVEMYISRAKIRKFSV-TWMWLQVLSWTCFIVTLLAAAGSIQGLVKD 254 (265)
Q Consensus 194 slvGs~~~~~l~filP~l~yl~~~~~~~~~~-~~~~~~~ii~~g~~~~v~Gty~si~~ii~~ 254 (265)
+++|+-.+....|..|-+.+..-.+..++.. .+.--.+-+++|+..|++|+..+-....+.
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~k 94 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNK 94 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778889999876653111111100 000001236778888888888777766543
No 83
>PLN02810 carbon-monoxide oxygenase
Probab=24.68 E-value=4e+02 Score=23.13 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
|+.+|.+...+=...++...+|+..-..|-++. .+ .|+- +-.+|+-..+-.++.+|-+..+-.+.+|.
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i-~nly-SLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GI-ANLY-SLHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-Ccee-eHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567888888888888888888876666654433 33 3331 12468777777778888888776666553
No 84
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.20 E-value=3.3e+02 Score=22.33 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=30.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccc
Q 046038 57 ENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGF 99 (265)
Q Consensus 57 ~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl 99 (265)
.+++.+++.......-.++-+.+|-.-...||+.-.+|.-.|+
T Consensus 11 YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~Nl 53 (165)
T PF11286_consen 11 YRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNL 53 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeH
Confidence 3455666666666666666677777778889988888888876
No 85
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.06 E-value=94 Score=26.65 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Q 046038 58 NKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAP 92 (265)
Q Consensus 58 ~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~ 92 (265)
++|-+++|.+++++++++-++++ .++.||++..
T Consensus 9 rRK~N~iLNiaI~IV~lLIiiva--~~lf~~~~~~ 41 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVSLLIIIVA--YQLFFGGDDS 41 (217)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHh--hhheecCCCc
Confidence 36789999998887776544443 5666666543
No 86
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=23.70 E-value=2.1e+02 Score=23.31 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 046038 34 IAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKA 91 (265)
Q Consensus 34 ~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~ 91 (265)
.+=++-.....+.-++.+|+|. +..--..=-.+=+++|.+.|+.+|..+-.+-
T Consensus 20 a~gs~~~~~~~~~wy~~L~kP~-----w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~ 72 (161)
T COG3476 20 ALGSFFISSRDPNWYNNLKKPF-----WLPPEWAFPPVWTVLYALIGISAYLVWEKGP 72 (161)
T ss_pred HHHHHHhccccHHHHHhccCCC-----CCChHHHhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334445567777899999992 2222222123446789999999999986543
No 87
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=23.44 E-value=6.4e+02 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh---hhccCC
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLG---YAAFGD 89 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~G---Y~~fG~ 89 (265)
|+.+|....+......++....+.| +..+.+
T Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~ 300 (483)
T PRK09442 267 KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD 300 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778877777666566655444444 444544
No 88
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.30 E-value=31 Score=34.73 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=29.1
Q ss_pred hhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038 47 IQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG 83 (265)
Q Consensus 47 I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G 83 (265)
.-.|+|+|| +..+|-...+.++++++|.++.++.
T Consensus 316 MSgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 316 MSGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred cCccccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 448999996 6799999999999999999987653
No 89
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=23.10 E-value=6.8e+02 Score=24.05 Aligned_cols=60 Identities=22% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCccc-hhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 30 AIGNIAFAYAYSIV-LVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 30 ~~gi~~Faf~~h~~-~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
..+..++.|..++. .|...+ .+++...+++.++........+...-.++|+.+...|.+.
T Consensus 240 ~~~~~~l~~~~~~~i~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 240 AWGTLFLGYFGQPHILPRFMA-AKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred HHHHHHhhhhcCchhhhhhhh-hccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555544 444444 3333111245666666655666655566677777666544
No 90
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.95 E-value=3.7e+02 Score=21.32 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
||..|.+...+-...++-..+|+..-..+-++. + ..|+- +..+|+-.+..+++.++.+..+..+.+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~-~~hf~-SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--G-YPDMY-SLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C-CCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556677888888888888888876655554442 2 22332 12468877788888889998888777664
No 91
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=22.89 E-value=1.2e+02 Score=20.43 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=18.6
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
+--++| +++.|.+++..+ .+-..++|++||.
T Consensus 22 ~~~~KP--d~~Ef~~ia~~~----~iG~~i~G~iGf~ 52 (61)
T PRK09400 22 KVARKP--TREEFLLVAKVT----GLGILLIGLIGFI 52 (61)
T ss_pred HHhcCC--CHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 445678 567788876653 2334456666664
No 92
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.50 E-value=4e+02 Score=22.11 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccH
Q 046038 59 KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPI 130 (265)
Q Consensus 59 ~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~ 130 (265)
|+..|.+...+=...++..++|+..-..+-++. .+ .|+- +-.+|+-...-.++.+|-+..+..+..|.
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~-~nly-SlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HT-ANLY-SLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-cchh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567788888888888888888877666665543 23 3332 12468777777788888888887766553
No 93
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=21.86 E-value=1.3e+02 Score=20.29 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=18.4
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
+--++| +++.|.+++..+ . +=..++|+.||.
T Consensus 18 k~~~KP--d~~Ef~~iak~t-~---iG~~i~G~IGf~ 48 (61)
T TIGR00327 18 AVCKKP--DLEEYLKVAKVT-G---IGIIIVGIIGYI 48 (61)
T ss_pred HHhcCC--CHHHHHHHHHHH-H---HHHHHHHHHHHH
Confidence 344678 567788876653 2 234456666664
No 94
>PRK10484 putative transporter; Provisional
Probab=21.59 E-value=7.3e+02 Score=23.88 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=22.8
Q ss_pred hhhhhcCCccchhhhhHHHHHHHHHHHHH---HHhhhhhhhhccCCC
Q 046038 47 IQDTLRSSPPENKVMKRASFVGVSITTIF---YMLCGTLGYAAFGDK 90 (265)
Q Consensus 47 I~~~mk~P~~~~~~~~~vl~~a~~i~~~~---y~~~g~~GY~~fG~~ 90 (265)
+|+-|.-++ .|+-+|....+.....+. ....|..++..|+++
T Consensus 264 ~qR~~aak~--~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~ 308 (523)
T PRK10484 264 VQRALGAKN--LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDG 308 (523)
T ss_pred HHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455554432 256666665554333333 334578888888763
No 95
>PHA02898 virion envelope protein; Provisional
Probab=20.86 E-value=2.1e+02 Score=20.92 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccc
Q 046038 27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLT 97 (265)
Q Consensus 27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~ 97 (265)
.....|++..+-.|...+.+..++=+ |+ ..-.|++.. +.+..-.-+.+|.+-|-.||....++...
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~-~~---~~~wRalSi-i~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEK-PA---DSALRSISI-ISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCC-cc---hhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 44567777777777777776665533 42 222333332 33344445677888899999887775554
No 96
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.69 E-value=1.7e+02 Score=23.37 Aligned_cols=19 Identities=0% Similarity=-0.211 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046038 234 WTCFIVTLLAAAGSIQGLV 252 (265)
Q Consensus 234 ~~g~~~~v~Gty~si~~ii 252 (265)
...++++..|.|..+|.+.
T Consensus 126 ~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 126 GGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344555688888888764
No 97
>COG4478 Predicted membrane protein [Function unknown]
Probab=20.44 E-value=3.7e+02 Score=22.65 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=29.6
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHH---HHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046038 189 FNSVIGLLGAIAFWPLTVYFPVE---MYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQ 256 (265)
Q Consensus 189 ~~~vlslvGs~~~~~l~filP~l---~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~ii~~~~ 256 (265)
|.+|=.+.=-+....+.+.+|.+ .+.-.+++..+-.|+- ..+++++++.+++.+...........++
T Consensus 84 FadVk~Lf~lv~~v~i~i~lp~l~~fi~r~ik~~~~s~lk~s-li~l~v~pliIGv~~~ligF~~fF~~FH 153 (210)
T COG4478 84 FADVKNLFHLVQIVAIFILLPFLPLFIYRFIKKRFLSYLKKS-LILLLVLPLIIGVAASLIGFDIFFTLFH 153 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 44444444444444555555643 2222222221122221 2345666666666654444444444443
Done!