Query 046038
Match_columns 265
No_of_seqs 127 out of 1122
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.3 1.5E-05 5.2E-10 73.1 14.2 64 24-90 190-253 (445)
2 4djk_A Probable glutamate/gamm 97.8 0.001 3.5E-08 62.0 18.1 60 28-90 204-263 (511)
3 3gia_A Uncharacterized protein 97.8 0.00048 1.6E-08 63.1 15.2 63 23-88 186-248 (444)
4 3dh4_A Sodium/glucose cotransp 50.1 1.6E+02 0.0053 27.2 15.1 39 47-87 242-283 (530)
5 2xq2_A Sodium/glucose cotransp 47.2 1.8E+02 0.0063 27.1 13.3 40 173-212 404-443 (593)
6 2jln_A MHP1; hydantoin, transp 45.6 1.1E+02 0.0036 28.1 9.5 42 41-82 224-273 (501)
7 3tx3_A Uncharacterized protein 42.4 1.1E+02 0.0039 25.4 8.4 36 49-89 22-57 (249)
8 3mp7_B Preprotein translocase 21.9 89 0.003 20.1 3.3 31 49-85 20-50 (61)
9 1rh5_B Preprotein translocase 16.0 1.3E+02 0.0043 20.2 3.1 31 49-85 24-54 (74)
10 2ww9_B Protein transport prote 15.3 1.4E+02 0.005 20.3 3.2 31 49-85 37-67 (80)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.25 E-value=1.5e-05 Score=73.10 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
...++.++....|+|.|.......-+|+||| +|+.+|++..+..++.++|+...+......+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4567788999999999999999999999999 378999999999999999999987766666543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.83 E-value=0.001 Score=62.00 Aligned_cols=60 Identities=7% Similarity=-0.042 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038 28 LQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK 90 (265)
Q Consensus 28 ~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~ 90 (265)
+.++...+|+|.|.......-+|+|||+ |+.+|++..++.++.++|+...+.-....+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 3457778999999999999999999993 68999999999999999999987766666554
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.81 E-value=0.00048 Score=63.07 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038 23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG 88 (265)
Q Consensus 23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG 88 (265)
.+.+.+.++....|+|.|.......-+|+||| +|+.+|++..+..++.++|....+......+
T Consensus 186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 186 AVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567788889999999999999999999999 2679999999999999999988766554444
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=50.12 E-value=1.6e+02 Score=27.17 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=20.5
Q ss_pred hhhhhcCCccchhhhhHHHHHHHHHHHHHH---Hhhhhhhhhcc
Q 046038 47 IQDTLRSSPPENKVMKRASFVGVSITTIFY---MLCGTLGYAAF 87 (265)
Q Consensus 47 I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y---~~~g~~GY~~f 87 (265)
+|+-|.-++ .|+-+|....+......+. ...|+.++..+
T Consensus 242 ~qR~laaks--~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 242 IQRTLAAKS--VSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HHHHHSSSC--HHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555442 2566776655544433333 34466666666
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=47.23 E-value=1.8e+02 Score=27.14 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHH
Q 046038 173 TVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEM 212 (265)
Q Consensus 173 ~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~ 212 (265)
.++.+++.++|..+.+.+.+++++....+....=++|+++
T Consensus 404 v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l 443 (593)
T 2xq2_A 404 VVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL 443 (593)
T ss_dssp HHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344555566665555666666655444433344455544
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=45.61 E-value=1.1e+02 Score=28.13 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=22.9
Q ss_pred ccchhhhhhhhcCCcc-chhhhhH----H---HHHHHHHHHHHHHhhhhh
Q 046038 41 SIVLVEIQDTLRSSPP-ENKVMKR----A---SFVGVSITTIFYMLCGTL 82 (265)
Q Consensus 41 h~~~~~I~~~mk~P~~-~~~~~~~----v---l~~a~~i~~~~y~~~g~~ 82 (265)
..+.++..+.+|+|++ ++++|.+ + ...+..+..++...+|+.
T Consensus 224 ~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~ 273 (501)
T 2jln_A 224 VVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAA 273 (501)
T ss_dssp HTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888899988742 1122222 2 333445555555556654
No 7
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=42.38 E-value=1.1e+02 Score=25.37 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=24.7
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGD 89 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~ 89 (265)
+.+.+| ++++.+.....+..++|.......+..+++
T Consensus 22 ~~i~~p-----~lr~~vl~Pllinl~L~~~~~~~~~~~~~~ 57 (249)
T 3tx3_A 22 ELIRTK-----GLRRYVVVPILTNLILFSLAFTWLYGEVDY 57 (249)
T ss_dssp HHHTST-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345655 688888888898888877765444444444
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=21.89 E-value=89 Score=20.14 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=18.1
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
+--++| +++.|.+++..+. +-..++|++||.
T Consensus 20 k~~~KP--d~~Ef~~iak~~~----iG~~i~G~iGf~ 50 (61)
T 3mp7_B 20 LVTKKP--NWATYKRAAKITG----LGIILIGLIGML 50 (61)
T ss_dssp HHSCCC--CTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344678 5577888766542 223445666664
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=16.04 E-value=1.3e+02 Score=20.25 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=17.9
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
+--++| +++.|.+++..+. +-..++|++||.
T Consensus 24 k~~~KP--dr~EF~~iak~~~----iG~~imG~IGfi 54 (74)
T 1rh5_B 24 LVLKKP--TKDEYLAVAKVTA----LGISLLGIIGYI 54 (74)
T ss_dssp HSEECC--CHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344677 5677888766542 223445666664
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=15.26 E-value=1.4e+02 Score=20.29 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=18.7
Q ss_pred hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038 49 DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA 85 (265)
Q Consensus 49 ~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~ 85 (265)
+--++| +++.|.+++..+ . +=..++|++||.
T Consensus 37 k~~~KP--dr~Ef~~iak~t-~---iG~~imG~IGfi 67 (80)
T 2ww9_B 37 AKCKKP--DLKEYTKIVKAV-G---IGFIAVGIIGYA 67 (80)
T ss_dssp HSCCCC--CHHHHHHHHHHH-H---HHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHH-H---HHHHHHHHHHHH
Confidence 445778 567788876654 2 234456666664
Done!