Query 046038
Match_columns 265
No_of_seqs 127 out of 1122
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 14:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046038.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046038hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 10.4 1.6E+02 0.012 20.5 4.4 30 48-80 65-94 (144)
2 d1rh5b_ f.23.28.1 (B:) Preprot 7.1 2.3E+02 0.017 16.3 3.6 31 50-86 14-44 (56)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 5.5 1.7E+02 0.012 19.1 2.6 18 175-192 10-27 (158)
4 d1q90r_ f.23.12.1 (R:) ISP sub 5.0 2.7E+02 0.02 14.8 2.5 18 196-213 18-35 (39)
5 d1ciya3 f.1.3.1 (A:33-255) del 4.5 2.8E+02 0.02 20.3 3.4 27 174-200 7-33 (223)
6 d1v54j_ f.23.4.1 (J:) Mitochon 3.8 4.2E+02 0.03 15.2 3.0 20 236-255 35-54 (58)
7 d2e74d2 f.23.12.1 (D:12-45) IS 3.0 3.8E+02 0.028 13.3 2.4 18 197-214 14-31 (34)
8 d3cx5c1 f.32.1.1 (C:262-385) M 2.9 6.1E+02 0.044 16.5 3.6 15 186-200 24-39 (124)
9 d1ppjc1 f.32.1.1 (C:261-379) M 2.7 6.2E+02 0.045 16.4 3.5 15 186-200 24-39 (119)
10 d1dlca3 f.1.3.1 (A:61-289) del 2.5 4.1E+02 0.03 19.4 2.4 27 180-210 16-42 (229)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.36 E-value=1.6e+02 Score=20.52 Aligned_cols=30 Identities=10% Similarity=-0.074 Sum_probs=18.0
Q ss_pred hhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 046038 48 QDTLRSSPPENKVMKRASFVGVSITTIFYMLCG 80 (265)
Q Consensus 48 ~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g 80 (265)
+.||+.|+ ..++.++..++..+.+-..++.
T Consensus 65 ~ae~~~p~---gewK~v~g~~~~~i~~s~~i~~ 94 (144)
T d1v54d_ 65 FAEMNRST---NEWKTVVGAAMFFIGFTALLLI 94 (144)
T ss_dssp HHHHTCCC---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCC---CchhHHHHHHHHHHHHHHHHHH
Confidence 47898885 4677777665544444333333
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.15 E-value=2.3e+02 Score=16.31 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=17.1
Q ss_pred hhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 046038 50 TLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAA 86 (265)
Q Consensus 50 ~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~ 86 (265)
--++| +++.|.++...+ .+. ..++|+.||.-
T Consensus 14 ~~~KP--~~~Ef~~ia~v~-~iG---~~i~G~IGf~I 44 (56)
T d1rh5b_ 14 VLKKP--TKDEYLAVAKVT-ALG---ISLLGIIGYII 44 (56)
T ss_dssp SEECC--CHHHHHHHHHHH-HHH---HHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHH-HHH---HHHHHHHHHHH
Confidence 34677 557788866553 222 34455566543
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.54 E-value=1.7e+02 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCchHHH
Q 046038 175 YVILTAVIAMLFPFFNSV 192 (265)
Q Consensus 175 ~v~~~~~iAi~iP~~~~v 192 (265)
+.++..+.|+.+|.+...
T Consensus 10 iaIIgILaaia~P~~~~~ 27 (158)
T d2pila_ 10 IAIVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555556666665443
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.99 E-value=2.7e+02 Score=14.77 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=9.4
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 046038 196 LGAIAFWPLTVYFPVEMY 213 (265)
Q Consensus 196 vGs~~~~~l~filP~l~y 213 (265)
+|+.+........|-.-|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 355555555555554433
No 5
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.51 E-value=2.8e+02 Score=20.29 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHhhhhh
Q 046038 174 VYVILTAVIAMLFPFFNSVIGLLGAIA 200 (265)
Q Consensus 174 ~~v~~~~~iAi~iP~~~~vlslvGs~~ 200 (265)
.+-++.++++.++|..|.++++++-+-
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~lw 33 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDIIW 33 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHc
Confidence 344677888888999998887765553
No 6
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.77 E-value=4.2e+02 Score=15.22 Aligned_cols=20 Identities=15% Similarity=-0.107 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 046038 236 CFIVTLLAAAGSIQGLVKDL 255 (265)
Q Consensus 236 g~~~~v~Gty~si~~ii~~~ 255 (265)
-..++++|+..|+..+....
T Consensus 35 Tm~L~~~G~~~s~~~l~~a~ 54 (58)
T d1v54j_ 35 TMTLCLGGTLYSLYCLGWAS 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33456778888888776543
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.97 E-value=3.8e+02 Score=13.34 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=13.4
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 046038 197 GAIAFWPLTVYFPVEMYI 214 (265)
Q Consensus 197 Gs~~~~~l~filP~l~yl 214 (265)
|+.+++.+.-..|..=|.
T Consensus 14 gt~tg~alg~lypvvkyf 31 (34)
T d2e74d2 14 GTVTGVALGALYPLVKYF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhHHhhc
Confidence 777788888888876554
No 8
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.88 E-value=6.1e+02 Score=16.53 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=8.2
Q ss_pred cCc-hHHHHHHhhhhh
Q 046038 186 FPF-FNSVIGLLGAIA 200 (265)
Q Consensus 186 iP~-~~~vlslvGs~~ 200 (265)
+|+ ++-++.+++|+.
T Consensus 24 iP~k~~Gvl~~~~si~ 39 (124)
T d3cx5c1 24 IPDKLLGVITMFAAIL 39 (124)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHH
Confidence 674 555555555543
No 9
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.71 E-value=6.2e+02 Score=16.42 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=9.0
Q ss_pred cCc-hHHHHHHhhhhh
Q 046038 186 FPF-FNSVIGLLGAIA 200 (265)
Q Consensus 186 iP~-~~~vlslvGs~~ 200 (265)
+|+ ++-++.+++|+.
T Consensus 24 ipnK~gGvl~m~~si~ 39 (119)
T d1ppjc1 24 IPNKLGGVLALAFSIL 39 (119)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHH
Confidence 774 666666665553
No 10
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=2.47 E-value=4.1e+02 Score=19.35 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=16.1
Q ss_pred HHHHHhcCchHHHHHHhhhhhhhhHHHHHHH
Q 046038 180 AVIAMLFPFFNSVIGLLGAIAFWPLTVYFPV 210 (265)
Q Consensus 180 ~~iAi~iP~~~~vlslvGs~~~~~l~filP~ 210 (265)
.+-++.+|..+.++++++ ..+.++.|.
T Consensus 16 il~~~~~P~~g~~~~~~~----~i~~~lwP~ 42 (229)
T d1dlca3 16 LLGVVGFPFGGALVSFYT----NFLNTIWPS 42 (229)
T ss_dssp HTTSCBSCCHHHHHHHHH----HHHHHTSSS
T ss_pred HHHhcCCCcHHHHHHHHH----HHHHHhCCC
Confidence 333345788887776654 345555664
Done!