BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046039
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 26/217 (11%)
Query: 301 GYENEAIKLFSGLQSSNLKPD----YISFIAVLTAC-NHSGKVNQAKDYFTLMTETYKIK 355
G EAI+ + + LKPD YI+ A L A + G V + Y ++
Sbjct: 81 GQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Query: 356 PSIKHYSCMVDALGRAGLLEEAEK-LIRSMPSDPD-AIIWGSLLSACRKHGNIEMAKQAA 413
+ + ++ ALGR LEEA+ ++++ + P+ A+ W +L G I +A
Sbjct: 139 SDLGN---LLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM-----KEVKIEKEPGCSLIE--- 465
++ + LD N Y+ + N+ + F+ A+ L + C E
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 466 VDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMGS 502
+D + + L P P+ Y +L ++E GS
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYC---NLANALKEKGS 286
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 101 LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNS 160
GL+ +G+ Q LE F M ++C + +FD DV W S
Sbjct: 5 FGLSHEGSHPQTLHAAQSLELSSFR----FTMQSDCNLV-----LFDS-----DVRVWAS 50
Query: 161 MIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRN 199
G C + +S L + ++NT+ W+S G + N
Sbjct: 51 NTAGATGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIGN 89
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 375 EEAEKLIRSMPSDPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433
E E +++ DP+ A W +L +A K G+ + A + ++ +ELD N + + + N
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 434 YAASYQFEEAME 445
Y ++EA+E
Sbjct: 87 YYKQGDYDEAIE 98
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 387 DP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444
DP A W +L +A K G+ + A + ++ +ELD N + + + N Y ++EA+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 445 E 445
E
Sbjct: 64 E 64
>pdb|4EW6|A Chain A, Crystal Structure Of D-Galactose-1-Dehydrogenase Protein
From Rhizobium Etli
Length = 330
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455
L++ +HG +E LD S V + Y++E A + + K V +
Sbjct: 53 LVATASRHGTVEGVNSYTTIEAXLDAEPSIDAVSL--CXPPQYRYEAAYKALVAGKHVFL 110
Query: 456 EKEPGCSLIEV 466
EK PG +L EV
Sbjct: 111 EKPPGATLSEV 121
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 382 RSMPSDPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440
+++ DP+ A W +L +A K G+ + A + ++ +ELD N + + N Y +
Sbjct: 34 KALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDY 93
Query: 441 EEAMEE 446
++A+E+
Sbjct: 94 QKAIED 99
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 387 DP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444
DP A W +L +A K G+ + A + ++ +ELD N + + + N Y +++A+
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 445 E 445
E
Sbjct: 64 E 64
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 378 EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437
E+ ++ P DP+A+ W L K G + A + K ++ GY+++S Y A
Sbjct: 29 ERALKENPQDPEALYW--LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86
Query: 438 YQFEEAME 445
Y+ E E
Sbjct: 87 YRQAEDRE 94
>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum
Length = 121
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
+YS + A G AGL E +I +P DP+A + L A G+ E AK + K + +L
Sbjct: 48 NYSAINHAAGEAGLHWTPENIIAYLP-DPNAFLRKFLADA----GHAEQAKGSTKMVFKL 102
Query: 420 -DKNE 423
D+ E
Sbjct: 103 PDEQE 107
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 387 DP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444
DP A W +L +A K G+ + A + ++ +ELD N + + + N Y ++EA+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 445 E 445
E
Sbjct: 64 E 64
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 336 GKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEA-EKLIRSMPSDP-DAII 392
G ++A +Y+ + ++ P S + + + +A + G +EA E +++ DP A
Sbjct: 15 GDYDEAIEYYQ---KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 393 WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
W +L +A K G+ + A + ++ +ELD + + + N Y ++EA+E
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 374 LEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433
+E +K + P++ +A W +L +A K G+ + A + ++ +EL N + + + N
Sbjct: 29 IEYYQKALELYPNNAEA--WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA 86
Query: 434 YAASYQFEEAME 445
Y ++EA+E
Sbjct: 87 YYKQGDYDEAIE 98
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 273 ERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332
E+ L V + V K LS W M+ GL ++ +E IK G S N+ L
Sbjct: 173 EKILAVCHGVMYKQLSAW--MLHGLLLDQHEEFFIK--QGPSSGNVSAQPEEDEEDLGIG 228
Query: 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLI 381
+GK + L+ E + PS+K +S V+ L + AEK++
Sbjct: 229 GLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKIL 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,253,757
Number of Sequences: 62578
Number of extensions: 557960
Number of successful extensions: 1167
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 21
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)