Query 046039
Match_columns 502
No_of_seqs 625 out of 2959
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 08:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.7E-74 7.9E-79 591.2 59.4 495 2-501 204-768 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.9E-73 4.2E-78 572.4 55.4 494 2-501 104-605 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 9.2E-62 2E-66 499.5 50.4 449 2-458 103-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.3E-60 5E-65 480.1 49.1 437 18-460 435-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.5E-60 3.2E-65 481.4 46.9 453 2-458 387-881 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.8E-56 6E-61 448.3 43.5 450 2-462 140-613 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-30 4E-35 273.6 49.6 432 32-499 442-886 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-30 4.6E-35 273.2 48.0 438 3-451 449-898 (899)
9 PRK11447 cellulose synthase su 99.9 4.7E-23 1E-27 218.1 48.3 414 28-452 276-739 (1157)
10 PRK11447 cellulose synthase su 99.9 4.1E-23 8.9E-28 218.5 46.2 445 2-454 129-667 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 5E-24 1.1E-28 192.5 30.0 358 88-451 116-483 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.1E-23 2.5E-28 190.3 29.9 379 53-443 117-509 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 9.4E-22 2E-26 195.7 40.5 391 55-453 130-571 (615)
14 PRK09782 bacteriophage N4 rece 99.9 2.8E-20 6E-25 188.6 43.6 437 3-452 62-671 (987)
15 PRK11788 tetratricopeptide rep 99.9 1E-21 2.2E-26 185.9 29.2 284 188-474 71-368 (389)
16 PRK15174 Vi polysaccharide exp 99.9 4.3E-20 9.3E-25 183.2 39.8 356 32-424 16-386 (656)
17 PRK09782 bacteriophage N4 rece 99.9 6.6E-19 1.4E-23 178.7 48.1 433 3-454 126-707 (987)
18 PRK10049 pgaA outer membrane p 99.9 1.8E-19 3.9E-24 182.6 41.7 386 32-454 26-457 (765)
19 PRK10049 pgaA outer membrane p 99.9 8.8E-20 1.9E-24 184.9 39.2 366 53-456 16-425 (765)
20 PRK15174 Vi polysaccharide exp 99.9 1.3E-19 2.8E-24 179.8 38.6 358 63-456 16-384 (656)
21 PRK11788 tetratricopeptide rep 99.9 2.9E-20 6.2E-25 176.0 30.1 292 97-418 44-346 (389)
22 TIGR00990 3a0801s09 mitochondr 99.9 6.3E-19 1.4E-23 175.6 40.7 387 28-425 135-577 (615)
23 PRK14574 hmsH outer membrane p 99.9 9.6E-18 2.1E-22 166.9 44.4 420 32-455 45-515 (822)
24 PRK14574 hmsH outer membrane p 99.8 1E-16 2.3E-21 159.6 42.8 389 60-453 42-479 (822)
25 KOG2002 TPR-containing nuclear 99.8 2.4E-17 5.3E-22 157.3 34.9 417 32-456 281-748 (1018)
26 KOG2002 TPR-containing nuclear 99.8 5.7E-16 1.2E-20 148.2 37.6 421 28-456 206-678 (1018)
27 KOG2003 TPR repeat-containing 99.8 5.6E-17 1.2E-21 142.2 27.5 409 22-440 203-710 (840)
28 KOG0495 HAT repeat protein [RN 99.8 1.1E-13 2.4E-18 127.1 41.0 426 33-469 418-894 (913)
29 KOG2076 RNA polymerase III tra 99.8 5E-15 1.1E-19 140.8 31.0 312 137-451 153-510 (895)
30 PF13429 TPR_15: Tetratricopep 99.7 7.1E-18 1.5E-22 151.2 10.1 258 191-452 13-276 (280)
31 KOG1173 Anaphase-promoting com 99.7 3.3E-14 7.2E-19 128.5 32.5 262 185-451 243-516 (611)
32 KOG4422 Uncharacterized conser 99.7 5.3E-13 1.2E-17 116.7 37.8 398 2-422 132-593 (625)
33 KOG2003 TPR repeat-containing 99.7 1.2E-14 2.7E-19 127.7 27.9 394 58-455 207-691 (840)
34 KOG1155 Anaphase-promoting com 99.7 1.7E-13 3.6E-18 121.0 31.2 331 118-452 159-494 (559)
35 KOG1915 Cell cycle control pro 99.7 4.8E-13 1E-17 118.5 33.9 399 54-459 75-506 (677)
36 KOG1126 DNA-binding cell divis 99.7 4.3E-15 9.3E-20 137.0 21.7 274 170-451 334-618 (638)
37 KOG1915 Cell cycle control pro 99.7 1.2E-12 2.6E-17 116.0 35.4 418 2-432 90-548 (677)
38 KOG0547 Translocase of outer m 99.7 3.1E-14 6.7E-19 126.4 25.6 216 231-451 336-564 (606)
39 PRK10747 putative protoheme IX 99.7 8.5E-14 1.8E-18 130.6 30.4 275 168-452 97-389 (398)
40 KOG1126 DNA-binding cell divis 99.7 1.8E-14 3.9E-19 132.9 22.1 250 201-456 334-589 (638)
41 KOG2076 RNA polymerase III tra 99.7 1E-12 2.2E-17 125.4 34.2 417 34-455 152-657 (895)
42 PF13429 TPR_15: Tetratricopep 99.6 5E-16 1.1E-20 139.2 9.8 247 226-501 13-265 (280)
43 PRK10747 putative protoheme IX 99.6 4.9E-13 1.1E-17 125.5 30.0 283 101-419 97-390 (398)
44 TIGR00540 hemY_coli hemY prote 99.6 1.8E-12 3.8E-17 122.4 32.4 117 135-252 96-218 (409)
45 KOG4422 Uncharacterized conser 99.6 1.7E-12 3.6E-17 113.7 29.2 350 16-385 203-588 (625)
46 COG2956 Predicted N-acetylgluc 99.6 5.9E-13 1.3E-17 112.3 25.2 310 136-475 48-369 (389)
47 KOG1155 Anaphase-promoting com 99.6 3.3E-12 7.3E-17 113.0 30.2 356 87-453 161-536 (559)
48 KOG0495 HAT repeat protein [RN 99.6 3.2E-11 7E-16 111.3 36.9 374 66-452 390-781 (913)
49 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 122.5 29.2 286 99-418 95-398 (409)
50 COG2956 Predicted N-acetylgluc 99.6 8.2E-12 1.8E-16 105.6 27.2 282 101-418 48-346 (389)
51 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 107.6 27.5 251 193-451 125-388 (400)
52 COG3071 HemY Uncharacterized e 99.5 5.1E-11 1.1E-15 103.9 29.3 276 136-418 97-389 (400)
53 TIGR02521 type_IV_pilW type IV 99.5 8E-12 1.7E-16 109.4 21.9 197 256-453 31-232 (234)
54 KOG4162 Predicted calmodulin-b 99.5 1.7E-10 3.6E-15 108.8 30.2 129 324-454 652-784 (799)
55 KOG1840 Kinesin light chain [C 99.5 1.5E-11 3.2E-16 114.9 23.0 164 289-452 285-478 (508)
56 KOG0547 Translocase of outer m 99.5 9.8E-11 2.1E-15 104.6 26.7 83 57-144 120-204 (606)
57 KOG4318 Bicoid mRNA stability 99.5 7.6E-11 1.6E-15 112.5 27.6 249 6-271 11-286 (1088)
58 KOG2047 mRNA splicing factor [ 99.4 2.4E-08 5.1E-13 92.7 40.6 401 38-451 92-613 (835)
59 PRK12370 invasion protein regu 99.4 5E-11 1.1E-15 117.0 25.0 260 185-455 255-537 (553)
60 KOG1174 Anaphase-promoting com 99.4 1.6E-09 3.4E-14 95.0 29.3 274 152-431 229-512 (564)
61 KOG1174 Anaphase-promoting com 99.4 9.1E-09 2E-13 90.4 33.4 269 182-456 228-503 (564)
62 KOG1129 TPR repeat-containing 99.4 1.5E-11 3.2E-16 104.1 15.8 229 223-456 225-461 (478)
63 KOG4340 Uncharacterized conser 99.4 2.8E-09 6.1E-14 89.5 27.7 392 55-458 13-448 (459)
64 KOG2376 Signal recognition par 99.4 1.7E-08 3.8E-13 92.7 35.2 411 24-450 16-517 (652)
65 KOG0548 Molecular co-chaperone 99.4 1.3E-09 2.9E-14 98.8 27.9 400 32-455 13-457 (539)
66 KOG1129 TPR repeat-containing 99.4 1.8E-11 3.9E-16 103.6 14.8 236 190-430 227-469 (478)
67 PF12569 NARP1: NMDA receptor- 99.4 8.7E-09 1.9E-13 97.9 34.2 406 32-449 15-516 (517)
68 COG3063 PilF Tfp pilus assembl 99.4 1E-10 2.2E-15 94.5 17.8 164 289-455 37-204 (250)
69 PRK12370 invasion protein regu 99.4 1.3E-10 2.7E-15 114.2 22.1 228 219-453 254-502 (553)
70 KOG2047 mRNA splicing factor [ 99.4 2.8E-08 6.1E-13 92.2 35.2 46 33-78 150-195 (835)
71 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.5E-14 99.7 25.8 280 154-436 243-535 (611)
72 PRK11189 lipoprotein NlpI; Pro 99.4 8.2E-10 1.8E-14 99.3 25.2 227 200-434 40-281 (296)
73 TIGR02521 type_IV_pilW type IV 99.4 3.7E-10 8E-15 98.8 22.7 199 186-419 31-232 (234)
74 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-10 3.6E-15 103.7 19.6 216 234-455 39-267 (296)
75 KOG1156 N-terminal acetyltrans 99.3 2.7E-08 5.8E-13 92.5 33.3 101 355-455 366-470 (700)
76 KOG1156 N-terminal acetyltrans 99.3 2.7E-08 5.9E-13 92.5 33.2 420 18-447 38-505 (700)
77 KOG4318 Bicoid mRNA stability 99.3 9E-10 2E-14 105.4 23.2 242 75-337 13-286 (1088)
78 KOG3785 Uncharacterized conser 99.3 3.2E-08 6.8E-13 85.3 29.6 413 32-458 33-495 (557)
79 KOG1840 Kinesin light chain [C 99.3 2.3E-09 5E-14 100.5 24.3 96 323-418 368-478 (508)
80 KOG0624 dsRNA-activated protei 99.3 2.8E-08 6.1E-13 85.2 27.3 304 123-453 38-370 (504)
81 PF13041 PPR_2: PPR repeat fam 99.3 2.2E-11 4.7E-16 76.5 6.7 50 184-233 1-50 (50)
82 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3E-13 96.5 28.3 287 60-384 12-331 (517)
83 KOG1125 TPR repeat-containing 99.2 7.8E-10 1.7E-14 101.2 17.9 252 231-501 295-559 (579)
84 KOG3785 Uncharacterized conser 99.2 2.9E-08 6.3E-13 85.5 25.3 381 59-450 29-454 (557)
85 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.6E-16 76.6 4.9 49 50-99 1-49 (50)
86 COG3063 PilF Tfp pilus assembl 99.2 4.3E-09 9.3E-14 85.3 18.7 194 258-452 37-235 (250)
87 KOG4162 Predicted calmodulin-b 99.2 4.2E-07 9.2E-12 86.5 33.8 336 118-454 318-750 (799)
88 KOG2376 Signal recognition par 99.2 3.8E-07 8.2E-12 84.2 32.1 382 59-454 19-488 (652)
89 KOG3616 Selective LIM binding 99.1 3E-08 6.5E-13 93.4 23.7 267 193-498 739-1009(1636)
90 PF04733 Coatomer_E: Coatomer 99.1 1.8E-09 4E-14 95.5 15.2 78 374-451 183-263 (290)
91 cd05804 StaR_like StaR_like; a 99.1 5.6E-07 1.2E-11 84.2 30.2 257 195-454 52-337 (355)
92 KOG3617 WD40 and TPR repeat-co 99.1 3.4E-06 7.3E-11 81.0 33.8 344 20-417 726-1107(1416)
93 PF04733 Coatomer_E: Coatomer 99.1 2.9E-08 6.3E-13 87.9 19.2 228 188-426 37-272 (290)
94 KOG1127 TPR repeat-containing 99.0 2.7E-07 5.8E-12 90.1 26.5 438 7-451 478-994 (1238)
95 cd05804 StaR_like StaR_like; a 99.0 1.4E-06 3E-11 81.6 30.8 56 363-418 269-335 (355)
96 KOG3616 Selective LIM binding 99.0 1.3E-06 2.8E-11 82.7 29.5 288 130-454 713-1025(1636)
97 PRK04841 transcriptional regul 99.0 7.8E-07 1.7E-11 94.2 32.2 324 131-454 382-761 (903)
98 KOG0548 Molecular co-chaperone 99.0 6.2E-07 1.4E-11 81.9 26.3 415 3-447 20-483 (539)
99 KOG0624 dsRNA-activated protei 99.0 1.7E-06 3.7E-11 74.6 27.3 328 55-426 41-377 (504)
100 PRK15359 type III secretion sy 99.0 2.8E-08 6E-13 78.6 14.8 92 361-452 27-120 (144)
101 TIGR03302 OM_YfiO outer membra 99.0 4.5E-08 9.8E-13 85.5 17.6 183 255-454 32-233 (235)
102 KOG1125 TPR repeat-containing 99.0 4.3E-08 9.4E-13 90.1 17.6 249 193-445 292-563 (579)
103 PRK10370 formate-dependent nit 99.0 4E-08 8.6E-13 82.2 16.1 148 294-455 23-175 (198)
104 PRK04841 transcriptional regul 99.0 5.4E-06 1.2E-10 87.9 35.3 359 59-422 348-763 (903)
105 KOG0985 Vesicle coat protein c 98.9 2E-05 4.4E-10 77.5 34.8 390 5-444 967-1374(1666)
106 KOG4340 Uncharacterized conser 98.9 1.3E-06 2.9E-11 73.8 22.7 325 83-416 5-372 (459)
107 PRK15363 pathogenicity island 98.9 5.9E-08 1.3E-12 75.1 12.3 119 358-499 35-155 (157)
108 PRK15359 type III secretion sy 98.9 1.2E-07 2.6E-12 75.0 14.0 124 307-436 13-138 (144)
109 PLN02789 farnesyltranstransfer 98.8 2.8E-06 6E-11 76.5 22.5 229 189-451 40-300 (320)
110 KOG0985 Vesicle coat protein c 98.8 7.2E-05 1.6E-09 73.9 32.8 353 50-448 982-1336(1666)
111 KOG3617 WD40 and TPR repeat-co 98.8 9.6E-06 2.1E-10 78.0 26.4 405 50-502 724-1160(1416)
112 KOG1070 rRNA processing protei 98.8 9.9E-07 2.2E-11 89.2 20.2 202 253-458 1455-1668(1710)
113 PRK15179 Vi polysaccharide bio 98.8 1E-06 2.2E-11 87.4 19.9 134 287-424 86-222 (694)
114 KOG1127 TPR repeat-containing 98.8 6.9E-06 1.5E-10 80.7 24.5 245 203-451 800-1102(1238)
115 KOG1128 Uncharacterized conser 98.7 4.2E-06 9E-11 79.5 21.9 215 121-350 396-615 (777)
116 TIGR03302 OM_YfiO outer membra 98.7 1E-06 2.2E-11 77.0 16.9 184 218-422 30-235 (235)
117 KOG1070 rRNA processing protei 98.7 5.9E-06 1.3E-10 83.9 23.4 232 105-339 1442-1688(1710)
118 KOG3081 Vesicle coat complex C 98.7 1.5E-05 3.3E-10 66.6 21.6 225 190-425 45-277 (299)
119 PLN02789 farnesyltranstransfer 98.7 2.3E-05 5.1E-10 70.6 24.8 140 158-299 40-188 (320)
120 KOG1128 Uncharacterized conser 98.7 9.3E-07 2E-11 83.8 16.0 187 253-454 395-583 (777)
121 PRK10370 formate-dependent nit 98.7 3.1E-06 6.7E-11 70.9 17.8 155 263-428 23-182 (198)
122 COG5010 TadD Flp pilus assembl 98.7 3.7E-06 7.9E-11 70.2 17.6 154 291-447 70-225 (257)
123 COG5010 TadD Flp pilus assembl 98.7 2.5E-06 5.3E-11 71.2 16.4 135 319-455 63-199 (257)
124 TIGR02552 LcrH_SycD type III s 98.7 3.1E-07 6.7E-12 72.4 11.0 97 358-454 17-115 (135)
125 KOG1914 mRNA cleavage and poly 98.6 0.00038 8.2E-09 64.4 35.1 397 17-421 17-503 (656)
126 PRK14720 transcript cleavage f 98.6 6.3E-06 1.4E-10 82.7 21.3 199 187-430 117-317 (906)
127 KOG2053 Mitochondrial inherita 98.6 0.00055 1.2E-08 67.2 32.7 407 33-458 21-507 (932)
128 KOG3081 Vesicle coat complex C 98.6 1.4E-05 3.1E-10 66.7 18.4 243 193-451 15-269 (299)
129 COG4783 Putative Zn-dependent 98.6 5E-05 1.1E-09 69.2 23.3 138 294-452 313-453 (484)
130 COG4783 Putative Zn-dependent 98.6 1.4E-05 3E-10 72.8 19.6 122 330-453 314-437 (484)
131 PRK14720 transcript cleavage f 98.6 6.3E-05 1.4E-09 75.8 25.8 166 123-316 31-198 (906)
132 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3.1E-12 52.9 4.2 32 118-149 2-33 (34)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.6E-06 3.5E-11 79.5 13.4 124 323-451 170-295 (395)
134 TIGR02552 LcrH_SycD type III s 98.5 3.6E-06 7.9E-11 66.2 13.4 118 309-429 5-124 (135)
135 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.9E-12 52.1 4.4 33 353-385 2-34 (34)
136 PRK15179 Vi polysaccharide bio 98.5 2.9E-05 6.2E-10 77.3 21.3 143 252-397 82-229 (694)
137 PF13414 TPR_11: TPR repeat; P 98.5 5.2E-07 1.1E-11 61.3 6.2 65 389-453 2-67 (69)
138 KOG3060 Uncharacterized conser 98.4 5.6E-05 1.2E-09 62.8 18.3 179 269-450 25-217 (289)
139 PF09976 TPR_21: Tetratricopep 98.4 8.5E-06 1.8E-10 64.8 13.6 124 325-450 15-144 (145)
140 KOG3060 Uncharacterized conser 98.4 2.5E-05 5.3E-10 64.9 16.1 200 233-435 24-236 (289)
141 KOG1914 mRNA cleavage and poly 98.4 0.0017 3.8E-08 60.2 32.4 395 50-452 18-500 (656)
142 PF12895 Apc3: Anaphase-promot 98.4 2.2E-07 4.9E-12 65.9 3.3 78 371-449 2-83 (84)
143 PF14559 TPR_19: Tetratricopep 98.4 8.7E-07 1.9E-11 60.0 6.0 53 401-453 2-54 (68)
144 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.8E-06 1E-10 63.9 10.7 95 360-454 4-106 (119)
145 PLN03088 SGT1, suppressor of 98.4 7.6E-06 1.6E-10 75.5 13.0 106 328-435 8-115 (356)
146 PF13432 TPR_16: Tetratricopep 98.3 1.2E-06 2.6E-11 58.6 5.7 60 396-455 3-62 (65)
147 KOG0553 TPR repeat-containing 98.3 4E-06 8.7E-11 71.4 9.7 101 331-433 90-192 (304)
148 PF09976 TPR_21: Tetratricopep 98.3 5.1E-05 1.1E-09 60.3 15.5 125 291-417 16-145 (145)
149 cd00189 TPR Tetratricopeptide 98.3 6E-06 1.3E-10 60.3 9.5 94 361-454 3-98 (100)
150 PF07079 DUF1347: Protein of u 98.3 0.0029 6.3E-08 57.5 29.2 411 32-452 17-523 (549)
151 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3E-05 6.5E-10 71.3 14.8 123 160-284 174-296 (395)
152 COG4235 Cytochrome c biogenesi 98.3 1E-05 2.2E-10 69.4 10.8 112 353-464 151-267 (287)
153 KOG0550 Molecular chaperone (D 98.2 3.5E-05 7.6E-10 68.5 13.7 156 295-454 177-351 (486)
154 KOG0553 TPR repeat-containing 98.2 1.3E-05 2.7E-10 68.5 10.4 107 295-405 89-198 (304)
155 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.2E-05 7E-10 59.2 11.8 106 323-428 3-114 (119)
156 PRK02603 photosystem I assembl 98.2 2.5E-05 5.3E-10 64.2 11.0 97 358-454 35-150 (172)
157 PLN03088 SGT1, suppressor of 98.1 4.2E-05 9.1E-10 70.7 12.8 97 293-392 8-105 (356)
158 PRK15331 chaperone protein Sic 98.1 7.3E-05 1.6E-09 58.5 11.8 89 364-452 43-133 (165)
159 PF13371 TPR_9: Tetratricopept 98.1 1.1E-05 2.4E-10 55.4 6.4 59 397-455 2-60 (73)
160 TIGR00756 PPR pentatricopeptid 98.1 7.8E-06 1.7E-10 46.7 4.5 33 188-220 2-34 (35)
161 PF13432 TPR_16: Tetratricopep 98.1 1.1E-05 2.3E-10 54.0 5.8 61 364-424 3-65 (65)
162 PF13812 PPR_3: Pentatricopept 98.1 9E-06 1.9E-10 46.0 4.4 33 187-219 2-34 (34)
163 TIGR00756 PPR pentatricopeptid 98.1 8.6E-06 1.9E-10 46.5 4.3 33 54-87 2-34 (35)
164 CHL00033 ycf3 photosystem I as 98.0 6E-05 1.3E-09 61.7 10.5 94 357-450 34-139 (168)
165 PF05843 Suf: Suppressor of fo 98.0 0.0003 6.5E-09 62.7 15.2 135 289-426 3-143 (280)
166 KOG1130 Predicted G-alpha GTPa 98.0 6E-05 1.3E-09 67.0 10.2 129 323-451 196-342 (639)
167 KOG2053 Mitochondrial inherita 98.0 0.023 4.9E-07 56.4 39.7 207 4-216 28-256 (932)
168 cd00189 TPR Tetratricopeptide 98.0 8.8E-05 1.9E-09 53.9 9.8 93 327-421 5-99 (100)
169 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.2E-10 45.1 4.2 33 53-86 2-34 (34)
170 PRK02603 photosystem I assembl 98.0 0.00025 5.4E-09 58.3 13.0 127 289-438 37-165 (172)
171 PRK10866 outer membrane biogen 98.0 0.0011 2.4E-08 57.5 17.4 57 395-451 180-239 (243)
172 PF12895 Apc3: Anaphase-promot 98.0 3.3E-05 7.2E-10 54.7 6.8 80 336-415 3-83 (84)
173 PRK10153 DNA-binding transcrip 97.9 0.00047 1E-08 66.6 16.4 67 359-425 421-488 (517)
174 KOG2041 WD40 repeat protein [G 97.9 0.012 2.6E-07 56.5 24.6 250 36-315 678-951 (1189)
175 KOG0550 Molecular chaperone (D 97.9 0.0032 7E-08 56.5 18.9 267 98-385 59-348 (486)
176 PF14938 SNAP: Soluble NSF att 97.9 0.002 4.4E-08 57.7 17.9 108 328-435 120-246 (282)
177 PF14938 SNAP: Soluble NSF att 97.8 0.012 2.6E-07 52.7 22.3 95 291-385 159-264 (282)
178 PF08579 RPM2: Mitochondrial r 97.8 0.00023 4.9E-09 51.4 8.7 81 54-135 27-116 (120)
179 KOG0543 FKBP-type peptidyl-pro 97.8 0.00015 3.3E-09 64.9 9.4 63 390-452 257-319 (397)
180 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 6.7E-05 1.4E-09 68.7 7.3 65 389-453 74-141 (453)
181 PRK10803 tol-pal system protei 97.8 0.00017 3.8E-09 62.9 9.6 85 369-453 154-246 (263)
182 PF13414 TPR_11: TPR repeat; P 97.8 6E-05 1.3E-09 51.0 5.4 65 357-421 2-69 (69)
183 COG4700 Uncharacterized protei 97.8 0.0052 1.1E-07 48.9 16.5 130 319-450 86-219 (251)
184 PF14559 TPR_19: Tetratricopep 97.8 2.1E-05 4.5E-10 53.2 3.1 62 370-431 3-66 (68)
185 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.2E-09 64.9 11.6 96 54-149 68-164 (429)
186 PF12688 TPR_5: Tetratrico pep 97.8 0.00031 6.8E-09 52.8 9.5 86 364-449 7-100 (120)
187 PRK10153 DNA-binding transcrip 97.8 0.0014 3E-08 63.5 16.0 136 317-456 332-485 (517)
188 PF13431 TPR_17: Tetratricopep 97.7 2.2E-05 4.8E-10 44.0 2.1 33 412-444 1-33 (34)
189 CHL00033 ycf3 photosystem I as 97.7 0.0011 2.3E-08 54.4 12.8 100 325-424 38-154 (168)
190 PF13428 TPR_14: Tetratricopep 97.7 7.9E-05 1.7E-09 44.9 4.3 42 391-432 2-43 (44)
191 PRK15363 pathogenicity island 97.7 0.0011 2.4E-08 51.8 11.6 96 185-282 34-129 (157)
192 PF01535 PPR: PPR repeat; Int 97.7 6.5E-05 1.4E-09 41.3 3.6 29 188-216 2-30 (31)
193 KOG1538 Uncharacterized conser 97.7 0.012 2.5E-07 56.1 19.7 105 300-418 729-845 (1081)
194 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.9E-08 47.6 10.3 80 189-268 28-116 (120)
195 PF12688 TPR_5: Tetratrico pep 97.6 0.0028 6.1E-08 47.7 12.6 94 292-385 6-102 (120)
196 PRK10866 outer membrane biogen 97.6 0.039 8.5E-07 48.0 21.4 66 186-252 32-100 (243)
197 PF04840 Vps16_C: Vps16, C-ter 97.6 0.053 1.1E-06 49.1 30.2 101 294-412 184-284 (319)
198 PF13525 YfiO: Outer membrane 97.6 0.0015 3.2E-08 55.2 12.0 50 396-445 147-199 (203)
199 COG4700 Uncharacterized protei 97.6 0.012 2.5E-07 46.9 15.4 131 288-418 90-221 (251)
200 PRK10803 tol-pal system protei 97.5 0.0016 3.4E-08 57.0 11.9 103 323-425 144-252 (263)
201 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.9E-09 40.0 3.5 28 54-81 2-29 (31)
202 PF13371 TPR_9: Tetratricopept 97.5 0.00041 8.8E-09 47.5 6.3 67 365-431 2-70 (73)
203 PF10037 MRP-S27: Mitochondria 97.5 0.0017 3.7E-08 60.3 11.8 61 291-351 107-167 (429)
204 PF13424 TPR_12: Tetratricopep 97.5 0.0002 4.3E-09 49.9 4.6 61 391-451 6-73 (78)
205 KOG1538 Uncharacterized conser 97.5 0.011 2.5E-07 56.2 16.9 117 168-315 729-845 (1081)
206 PF04840 Vps16_C: Vps16, C-ter 97.5 0.08 1.7E-06 47.9 23.4 110 323-449 178-287 (319)
207 PF13281 DUF4071: Domain of un 97.5 0.018 3.9E-07 52.5 17.7 170 258-430 143-345 (374)
208 KOG2796 Uncharacterized conser 97.5 0.015 3.2E-07 49.1 15.7 136 289-425 179-321 (366)
209 KOG1130 Predicted G-alpha GTPa 97.4 0.0018 3.9E-08 58.0 11.0 153 289-441 197-372 (639)
210 KOG2796 Uncharacterized conser 97.4 0.036 7.8E-07 46.9 17.8 130 188-317 179-316 (366)
211 KOG2041 WD40 repeat protein [G 97.4 0.061 1.3E-06 52.0 21.3 73 35-112 748-820 (1189)
212 PF05843 Suf: Suppressor of fo 97.4 0.0012 2.5E-08 58.9 10.0 129 323-453 2-136 (280)
213 PF07079 DUF1347: Protein of u 97.4 0.097 2.1E-06 48.1 29.0 56 360-415 462-520 (549)
214 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.1 2.2E-06 47.9 29.6 397 17-425 39-537 (660)
215 PF13525 YfiO: Outer membrane 97.4 0.054 1.2E-06 45.8 19.1 63 189-251 8-72 (203)
216 KOG2280 Vacuolar assembly/sort 97.3 0.18 3.9E-06 49.4 27.9 353 62-447 399-793 (829)
217 PF13512 TPR_18: Tetratricopep 97.2 0.011 2.4E-07 45.5 11.3 90 364-453 16-128 (142)
218 COG4235 Cytochrome c biogenesi 97.2 0.018 4E-07 50.0 13.7 105 319-425 153-262 (287)
219 PF06239 ECSIT: Evolutionarily 97.2 0.0063 1.4E-07 50.1 10.3 97 175-271 34-153 (228)
220 KOG0543 FKBP-type peptidyl-pro 97.1 0.0064 1.4E-07 54.8 11.1 95 359-453 258-355 (397)
221 PRK11619 lytic murein transgly 97.1 0.39 8.5E-06 48.3 31.3 125 300-431 254-383 (644)
222 COG3898 Uncharacterized membra 97.1 0.21 4.6E-06 45.0 27.1 246 136-388 133-393 (531)
223 COG3898 Uncharacterized membra 97.1 0.22 4.8E-06 44.9 27.6 276 136-418 97-391 (531)
224 PF13424 TPR_12: Tetratricopep 97.1 0.001 2.2E-08 46.3 4.4 62 358-419 5-75 (78)
225 PF03704 BTAD: Bacterial trans 97.0 0.0035 7.7E-08 49.8 7.8 68 392-459 64-136 (146)
226 COG1729 Uncharacterized protei 97.0 0.0094 2E-07 51.0 10.1 91 334-424 153-249 (262)
227 PF06239 ECSIT: Evolutionarily 96.9 0.0046 1E-07 50.9 7.6 99 39-138 32-153 (228)
228 COG4105 ComL DNA uptake lipopr 96.9 0.24 5.2E-06 42.3 18.6 57 395-451 172-231 (254)
229 KOG2114 Vacuolar assembly/sort 96.9 0.59 1.3E-05 46.7 26.1 174 25-212 339-516 (933)
230 PF00515 TPR_1: Tetratricopept 96.8 0.0028 6.1E-08 35.5 4.2 33 391-423 2-34 (34)
231 KOG1258 mRNA processing protei 96.8 0.52 1.1E-05 45.2 29.8 393 39-438 30-489 (577)
232 PF07719 TPR_2: Tetratricopept 96.8 0.0046 9.9E-08 34.6 4.8 33 391-423 2-34 (34)
233 PF10300 DUF3808: Protein of u 96.7 0.17 3.6E-06 48.9 17.8 116 335-453 246-376 (468)
234 COG3118 Thioredoxin domain-con 96.7 0.11 2.4E-06 45.1 14.1 120 331-453 143-265 (304)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.016 3.4E-07 53.7 9.6 97 356-455 73-176 (453)
236 PRK11906 transcriptional regul 96.6 0.045 9.7E-07 50.9 12.5 62 389-450 337-398 (458)
237 COG1729 Uncharacterized protei 96.6 0.036 7.8E-07 47.6 11.0 94 360-456 144-247 (262)
238 PF09205 DUF1955: Domain of un 96.6 0.11 2.4E-06 39.0 11.8 141 297-456 12-152 (161)
239 PRK15331 chaperone protein Sic 96.6 0.055 1.2E-06 42.8 10.9 85 299-386 49-133 (165)
240 COG3118 Thioredoxin domain-con 96.6 0.35 7.6E-06 42.2 16.6 149 295-445 142-293 (304)
241 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.72 1.6E-05 42.7 27.4 408 40-453 28-531 (660)
242 COG0457 NrfG FOG: TPR repeat [ 96.5 0.51 1.1E-05 40.7 25.4 220 201-422 38-268 (291)
243 KOG1258 mRNA processing protei 96.4 0.97 2.1E-05 43.5 24.5 340 87-444 44-420 (577)
244 PF12921 ATP13: Mitochondrial 96.4 0.055 1.2E-06 41.2 9.8 99 255-369 1-99 (126)
245 KOG0890 Protein kinase of the 96.4 2.5 5.4E-05 47.7 25.3 312 128-456 1388-1734(2382)
246 PF13512 TPR_18: Tetratricopep 96.4 0.12 2.6E-06 39.9 11.4 116 294-425 17-134 (142)
247 COG0457 NrfG FOG: TPR repeat [ 96.3 0.59 1.3E-05 40.2 26.2 219 235-455 37-267 (291)
248 KOG4234 TPR repeat-containing 96.3 0.015 3.2E-07 47.0 6.2 88 368-455 105-199 (271)
249 PF03704 BTAD: Bacterial trans 96.2 0.059 1.3E-06 42.8 9.8 72 188-260 64-140 (146)
250 KOG1941 Acetylcholine receptor 96.2 0.34 7.4E-06 43.3 14.7 94 188-281 85-187 (518)
251 COG4105 ComL DNA uptake lipopr 96.2 0.7 1.5E-05 39.6 18.3 180 57-250 39-233 (254)
252 PF02259 FAT: FAT domain; Int 96.2 1.1 2.4E-05 41.7 19.8 148 287-437 146-305 (352)
253 KOG2610 Uncharacterized conser 96.2 0.069 1.5E-06 47.0 10.2 161 297-460 113-283 (491)
254 KOG4555 TPR repeat-containing 96.1 0.066 1.4E-06 40.0 8.4 90 366-455 51-146 (175)
255 PF13428 TPR_14: Tetratricopep 96.1 0.012 2.7E-07 35.2 4.0 32 424-455 1-32 (44)
256 KOG1585 Protein required for f 96.1 0.46 9.9E-06 40.1 14.0 83 55-148 34-116 (308)
257 smart00299 CLH Clathrin heavy 96.0 0.57 1.2E-05 36.8 14.9 84 93-181 12-95 (140)
258 PF12921 ATP13: Mitochondrial 95.9 0.063 1.4E-06 40.9 8.1 52 83-134 47-99 (126)
259 COG4785 NlpI Lipoprotein NlpI, 95.8 0.72 1.6E-05 38.2 13.9 161 289-455 101-268 (297)
260 PF13181 TPR_8: Tetratricopept 95.8 0.021 4.7E-07 31.8 4.0 32 391-422 2-33 (34)
261 PF04053 Coatomer_WDAD: Coatom 95.8 0.44 9.4E-06 45.4 14.7 153 62-244 271-425 (443)
262 PRK11906 transcriptional regul 95.8 0.67 1.5E-05 43.4 15.3 145 302-448 273-431 (458)
263 PF13281 DUF4071: Domain of un 95.7 1.6 3.5E-05 40.2 17.6 73 194-266 149-227 (374)
264 smart00299 CLH Clathrin heavy 95.6 0.82 1.8E-05 35.9 15.0 124 291-434 11-135 (140)
265 KOG1585 Protein required for f 95.6 1.3 2.7E-05 37.6 16.3 85 361-446 153-249 (308)
266 PF04053 Coatomer_WDAD: Coatom 95.5 0.59 1.3E-05 44.6 14.7 160 96-282 269-428 (443)
267 KOG1941 Acetylcholine receptor 95.5 0.23 5E-06 44.3 10.9 223 196-418 16-274 (518)
268 KOG4555 TPR repeat-containing 95.5 0.057 1.2E-06 40.4 6.1 58 396-453 49-106 (175)
269 COG4649 Uncharacterized protei 95.5 0.33 7.2E-06 38.5 10.5 117 268-385 70-194 (221)
270 PF13176 TPR_7: Tetratricopept 95.4 0.033 7.1E-07 31.6 3.8 27 392-418 1-27 (36)
271 PF04184 ST7: ST7 protein; In 95.4 2.5 5.5E-05 40.0 18.1 56 293-348 265-321 (539)
272 PF09205 DUF1955: Domain of un 95.3 0.92 2E-05 34.3 13.7 137 99-253 13-152 (161)
273 KOG2280 Vacuolar assembly/sort 95.3 3.6 7.7E-05 40.9 26.8 323 57-415 442-795 (829)
274 PF10300 DUF3808: Protein of u 95.2 2.3 4.9E-05 41.3 17.8 126 189-316 191-334 (468)
275 KOG1586 Protein required for f 95.1 1.3 2.7E-05 37.3 13.2 64 363-426 118-190 (288)
276 KOG2610 Uncharacterized conser 95.0 0.73 1.6E-05 40.9 12.1 175 267-444 114-306 (491)
277 PF07035 Mic1: Colon cancer-as 94.8 1.7 3.7E-05 34.9 14.9 32 74-106 16-47 (167)
278 COG3629 DnrI DNA-binding trans 94.8 0.19 4.1E-06 44.0 8.2 61 392-452 155-215 (280)
279 COG1747 Uncharacterized N-term 94.7 4 8.6E-05 38.7 19.3 91 187-282 67-157 (711)
280 PF04184 ST7: ST7 protein; In 94.7 1.9 4.1E-05 40.7 14.7 55 363-417 264-322 (539)
281 KOG2114 Vacuolar assembly/sort 94.6 5.7 0.00012 40.1 20.0 176 157-348 336-516 (933)
282 KOG3941 Intermediate in Toll s 94.5 0.47 1E-05 40.9 9.7 97 176-272 55-174 (406)
283 PF13176 TPR_7: Tetratricopept 94.4 0.078 1.7E-06 30.0 3.5 26 426-451 1-26 (36)
284 KOG4648 Uncharacterized conser 94.2 0.19 4.1E-06 44.5 6.9 101 328-430 103-205 (536)
285 PF13174 TPR_6: Tetratricopept 94.2 0.11 2.5E-06 28.4 3.9 29 394-422 4-32 (33)
286 KOG2396 HAT (Half-A-TPR) repea 94.1 5.3 0.00012 37.8 31.2 240 203-451 299-557 (568)
287 COG4785 NlpI Lipoprotein NlpI, 94.1 3 6.4E-05 34.8 15.2 177 235-420 79-267 (297)
288 PF09613 HrpB1_HrpK: Bacterial 94.0 0.45 9.8E-06 37.6 8.1 83 359-441 8-95 (160)
289 PRK09687 putative lyase; Provi 94.0 4.3 9.3E-05 36.2 25.6 26 395-421 240-265 (280)
290 KOG2066 Vacuolar assembly/sort 94.0 7.6 0.00017 39.0 25.0 147 59-213 363-532 (846)
291 TIGR02561 HrpB1_HrpK type III 93.9 0.43 9.4E-06 37.0 7.6 83 359-441 8-95 (153)
292 COG2976 Uncharacterized protei 93.9 3.1 6.6E-05 34.1 13.5 92 328-422 95-191 (207)
293 PF07719 TPR_2: Tetratricopept 93.8 0.093 2E-06 29.0 3.0 31 425-455 2-32 (34)
294 PF13374 TPR_10: Tetratricopep 93.7 0.18 3.9E-06 29.5 4.5 28 391-418 3-30 (42)
295 PF00637 Clathrin: Region in C 93.7 0.2 4.2E-06 39.6 6.0 85 93-181 12-96 (143)
296 PF02259 FAT: FAT domain; Int 93.7 4.1 8.9E-05 37.9 15.7 68 388-455 144-215 (352)
297 COG4649 Uncharacterized protei 93.6 2.3 5E-05 34.0 11.0 122 297-418 68-195 (221)
298 KOG1920 IkappaB kinase complex 93.5 12 0.00026 39.7 20.7 23 191-213 795-819 (1265)
299 PF14853 Fis1_TPR_C: Fis1 C-te 93.3 0.41 8.9E-06 29.9 5.5 38 394-431 5-42 (53)
300 PF00515 TPR_1: Tetratricopept 93.3 0.13 2.8E-06 28.5 3.0 31 425-455 2-32 (34)
301 KOG3941 Intermediate in Toll s 93.3 0.98 2.1E-05 39.1 9.3 105 276-381 54-182 (406)
302 PF02284 COX5A: Cytochrome c o 93.0 1.3 2.8E-05 31.8 8.1 60 305-366 28-87 (108)
303 PF10602 RPN7: 26S proteasome 93.0 1.9 4E-05 35.4 10.6 98 289-386 38-141 (177)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 93.0 0.69 1.5E-05 32.7 6.7 60 305-366 25-84 (103)
305 KOG0276 Vesicle coat complex C 93.0 2.7 5.8E-05 40.6 12.5 151 267-450 597-747 (794)
306 KOG0890 Protein kinase of the 92.9 22 0.00047 41.0 23.8 61 358-418 1670-1730(2382)
307 COG2909 MalT ATP-dependent tra 92.8 13 0.00027 38.2 21.1 213 132-347 424-684 (894)
308 smart00028 TPR Tetratricopepti 92.5 0.25 5.5E-06 26.3 3.7 31 392-422 3-33 (34)
309 PRK15180 Vi polysaccharide bio 92.5 1.8 3.9E-05 40.5 10.6 89 368-456 333-423 (831)
310 PF09613 HrpB1_HrpK: Bacterial 92.4 4.6 0.0001 32.1 12.3 108 332-444 20-129 (160)
311 PF04097 Nic96: Nup93/Nic96; 92.4 14 0.0003 37.5 20.5 212 51-284 111-355 (613)
312 PF13170 DUF4003: Protein of u 92.4 1.5 3.3E-05 39.3 10.1 126 2-131 79-225 (297)
313 KOG3364 Membrane protein invol 92.3 1.8 4E-05 32.9 8.6 72 355-426 29-107 (149)
314 KOG4648 Uncharacterized conser 92.3 0.52 1.1E-05 41.8 6.7 79 294-383 104-183 (536)
315 KOG1464 COP9 signalosome, subu 92.2 4.3 9.3E-05 35.0 11.7 180 271-450 42-258 (440)
316 KOG1920 IkappaB kinase complex 92.1 18 0.0004 38.4 23.1 114 263-387 915-1028(1265)
317 PRK10941 hypothetical protein; 92.1 1.1 2.3E-05 39.5 8.5 63 392-454 183-245 (269)
318 KOG4642 Chaperone-dependent E3 92.0 0.56 1.2E-05 39.4 6.2 63 388-450 41-104 (284)
319 PF14853 Fis1_TPR_C: Fis1 C-te 92.0 0.76 1.7E-05 28.7 5.4 50 426-501 3-52 (53)
320 KOG4234 TPR repeat-containing 91.8 3.2 7E-05 34.1 10.1 100 332-433 105-211 (271)
321 COG3629 DnrI DNA-binding trans 91.7 2.3 4.9E-05 37.5 10.0 77 187-264 154-235 (280)
322 PF07721 TPR_4: Tetratricopept 91.7 0.23 5E-06 25.5 2.5 24 425-448 2-25 (26)
323 TIGR02508 type_III_yscG type I 91.6 3.1 6.6E-05 29.8 8.4 58 165-225 49-106 (115)
324 PF06552 TOM20_plant: Plant sp 91.6 1.3 2.7E-05 35.8 7.5 63 387-456 65-139 (186)
325 PF07035 Mic1: Colon cancer-as 91.4 6.5 0.00014 31.7 12.3 136 108-251 14-150 (167)
326 PF13174 TPR_6: Tetratricopept 91.2 0.27 5.8E-06 26.8 2.7 30 426-455 2-31 (33)
327 PF10602 RPN7: 26S proteasome 91.2 4.1 8.9E-05 33.4 10.6 92 258-351 38-142 (177)
328 KOG0545 Aryl-hydrocarbon recep 90.9 0.94 2E-05 38.3 6.4 62 393-454 233-294 (329)
329 PRK09687 putative lyase; Provi 90.8 12 0.00025 33.5 27.8 50 152-201 34-83 (280)
330 PRK11619 lytic murein transgly 90.6 22 0.00047 36.2 36.6 419 22-458 36-510 (644)
331 KOG1550 Extracellular protein 90.5 20 0.00044 35.8 22.9 272 171-454 228-539 (552)
332 PF08631 SPO22: Meiosis protei 90.2 13 0.00028 33.2 25.9 62 188-250 86-150 (278)
333 PF13181 TPR_8: Tetratricopept 90.2 0.59 1.3E-05 25.7 3.5 29 425-453 2-30 (34)
334 KOG1586 Protein required for f 90.2 11 0.00023 32.1 13.6 59 366-424 162-229 (288)
335 COG2909 MalT ATP-dependent tra 90.1 25 0.00054 36.2 26.6 218 229-449 423-684 (894)
336 PF13431 TPR_17: Tetratricopep 89.9 0.51 1.1E-05 26.2 3.0 32 111-143 2-33 (34)
337 KOG1464 COP9 signalosome, subu 89.8 12 0.00027 32.4 17.2 220 189-414 68-327 (440)
338 COG4455 ImpE Protein of avirul 89.7 0.85 1.8E-05 37.9 5.2 64 361-424 4-69 (273)
339 KOG4570 Uncharacterized conser 89.1 3.4 7.3E-05 36.5 8.6 46 103-148 115-160 (418)
340 KOG1308 Hsp70-interacting prot 89.0 0.25 5.5E-06 43.8 1.9 89 370-458 126-216 (377)
341 KOG1550 Extracellular protein 89.0 17 0.00036 36.4 14.7 81 373-455 343-428 (552)
342 PRK15180 Vi polysaccharide bio 88.9 3.6 7.7E-05 38.6 9.1 122 298-423 300-424 (831)
343 PF13374 TPR_10: Tetratricopep 88.8 0.75 1.6E-05 26.7 3.5 29 425-453 3-31 (42)
344 PF08631 SPO22: Meiosis protei 88.7 17 0.00037 32.5 24.8 120 197-316 4-150 (278)
345 KOG2066 Vacuolar assembly/sort 88.7 29 0.00064 35.1 23.3 101 95-198 363-467 (846)
346 PF11207 DUF2989: Protein of u 88.6 3.3 7.1E-05 34.3 7.9 75 368-444 117-198 (203)
347 PF13170 DUF4003: Protein of u 88.4 19 0.00041 32.5 17.2 47 105-151 79-131 (297)
348 COG3947 Response regulator con 87.5 19 0.00042 31.7 15.5 60 392-451 281-340 (361)
349 KOG4279 Serine/threonine prote 87.4 20 0.00043 36.1 13.4 189 242-433 184-409 (1226)
350 PF00637 Clathrin: Region in C 87.2 0.53 1.2E-05 37.1 2.7 53 228-280 14-66 (143)
351 PF13929 mRNA_stabil: mRNA sta 86.9 13 0.00029 32.8 10.9 112 37-148 144-263 (292)
352 PF14561 TPR_20: Tetratricopep 86.2 2.4 5.3E-05 30.1 5.3 51 390-440 22-74 (90)
353 PF06552 TOM20_plant: Plant sp 86.1 1.1 2.4E-05 36.1 3.8 48 406-453 51-109 (186)
354 PRK13800 putative oxidoreducta 84.9 60 0.0013 34.9 26.0 92 356-450 787-878 (897)
355 KOG0551 Hsp90 co-chaperone CNS 84.8 3.8 8.2E-05 36.6 6.7 91 360-450 83-179 (390)
356 PF11207 DUF2989: Protein of u 84.8 11 0.00024 31.3 9.0 78 197-276 118-198 (203)
357 COG2976 Uncharacterized protei 84.8 21 0.00046 29.5 14.7 90 228-317 96-189 (207)
358 KOG4507 Uncharacterized conser 84.7 2.8 6.1E-05 40.4 6.3 98 335-433 620-719 (886)
359 smart00028 TPR Tetratricopepti 84.7 1.7 3.6E-05 22.8 3.3 29 425-453 2-30 (34)
360 PF09986 DUF2225: Uncharacteri 84.5 8.2 0.00018 32.8 8.6 63 392-454 120-195 (214)
361 KOG2471 TPR repeat-containing 84.3 31 0.00067 32.9 12.5 102 265-369 249-380 (696)
362 KOG2582 COP9 signalosome, subu 84.1 33 0.00073 31.3 12.6 111 54-166 104-226 (422)
363 smart00386 HAT HAT (Half-A-TPR 84.1 2.7 5.8E-05 22.5 3.9 29 404-432 1-29 (33)
364 TIGR03504 FimV_Cterm FimV C-te 83.9 2.1 4.6E-05 25.4 3.4 27 428-454 3-29 (44)
365 TIGR02561 HrpB1_HrpK type III 83.0 21 0.00045 28.1 11.5 51 100-151 22-72 (153)
366 KOG3364 Membrane protein invol 82.5 8.8 0.00019 29.4 6.9 21 364-384 77-97 (149)
367 COG1747 Uncharacterized N-term 82.3 49 0.0011 31.9 20.9 59 219-280 64-122 (711)
368 PF13762 MNE1: Mitochondrial s 82.1 11 0.00023 29.6 7.5 81 55-135 42-127 (145)
369 KOG4077 Cytochrome c oxidase, 82.1 9.5 0.00021 28.7 6.8 58 306-365 68-125 (149)
370 PF07163 Pex26: Pex26 protein; 82.0 22 0.00047 31.3 9.9 87 193-279 90-181 (309)
371 cd00923 Cyt_c_Oxidase_Va Cytoc 82.0 12 0.00027 26.7 7.0 46 204-249 25-70 (103)
372 cd08819 CARD_MDA5_2 Caspase ac 81.9 10 0.00022 26.5 6.5 66 4-72 21-86 (88)
373 PF02284 COX5A: Cytochrome c o 81.6 12 0.00026 27.1 6.9 60 204-264 28-87 (108)
374 PF12862 Apc5: Anaphase-promot 81.4 5.6 0.00012 28.5 5.6 53 400-452 8-69 (94)
375 KOG4570 Uncharacterized conser 81.0 23 0.00049 31.7 9.8 100 251-351 59-164 (418)
376 PF12968 DUF3856: Domain of Un 80.4 22 0.00047 26.6 8.1 61 390-450 55-126 (144)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 80.2 16 0.00035 27.9 8.0 42 408-449 81-124 (126)
378 KOG4507 Uncharacterized conser 79.8 15 0.00032 35.8 9.0 135 319-455 568-707 (886)
379 PF04910 Tcf25: Transcriptiona 79.8 53 0.0012 30.7 14.3 58 395-452 108-167 (360)
380 PF10579 Rapsyn_N: Rapsyn N-te 79.6 4.4 9.6E-05 27.6 4.1 45 402-446 18-65 (80)
381 PF09670 Cas_Cas02710: CRISPR- 79.4 47 0.001 31.3 12.4 53 297-350 141-197 (379)
382 KOG2396 HAT (Half-A-TPR) repea 78.7 65 0.0014 31.0 28.8 102 319-423 456-564 (568)
383 PRK13800 putative oxidoreducta 78.7 1E+02 0.0022 33.2 27.7 159 178-350 720-880 (897)
384 KOG0276 Vesicle coat complex C 78.3 20 0.00044 35.0 9.4 74 26-115 620-693 (794)
385 KOG2300 Uncharacterized conser 77.1 71 0.0015 30.6 30.9 151 64-214 59-240 (629)
386 cd08819 CARD_MDA5_2 Caspase ac 76.9 20 0.00043 25.1 6.7 66 240-307 21-86 (88)
387 PF00244 14-3-3: 14-3-3 protei 76.7 50 0.0011 28.7 11.0 163 292-455 6-200 (236)
388 PF10345 Cohesin_load: Cohesin 76.6 93 0.002 31.7 30.3 177 4-181 40-251 (608)
389 PF14561 TPR_20: Tetratricopep 76.5 24 0.00053 25.0 7.8 41 412-452 10-50 (90)
390 TIGR03504 FimV_Cterm FimV C-te 76.5 7.4 0.00016 23.1 4.0 25 192-216 5-29 (44)
391 KOG2297 Predicted translation 76.3 57 0.0012 29.1 11.4 21 287-307 321-341 (412)
392 PRK13342 recombination factor 76.1 76 0.0016 30.4 13.4 115 105-234 154-278 (413)
393 COG0790 FOG: TPR repeat, SEL1 75.5 62 0.0013 29.1 19.4 77 376-455 173-268 (292)
394 KOG0376 Serine-threonine phosp 75.0 1.9 4.1E-05 40.5 1.9 103 328-433 10-115 (476)
395 PF07720 TPR_3: Tetratricopept 75.0 13 0.00028 21.0 4.8 30 393-422 4-35 (36)
396 PF07163 Pex26: Pex26 protein; 74.7 45 0.00098 29.4 9.7 84 262-345 89-181 (309)
397 PRK12798 chemotaxis protein; R 74.6 77 0.0017 29.9 20.6 150 269-420 125-287 (421)
398 PF13934 ELYS: Nuclear pore co 74.5 50 0.0011 28.4 10.3 103 91-198 79-184 (226)
399 COG3947 Response regulator con 74.4 63 0.0014 28.7 12.6 59 189-248 282-340 (361)
400 cd00280 TRFH Telomeric Repeat 74.3 47 0.001 27.2 11.1 70 374-444 85-164 (200)
401 PF10345 Cohesin_load: Cohesin 73.0 1.1E+02 0.0025 31.1 29.5 178 70-248 39-252 (608)
402 COG4976 Predicted methyltransf 73.0 6.6 0.00014 33.1 4.3 57 369-425 6-64 (287)
403 PF04097 Nic96: Nup93/Nic96; 72.7 1.2E+02 0.0025 31.0 21.2 49 32-80 122-180 (613)
404 PF04190 DUF410: Protein of un 72.7 68 0.0015 28.3 18.3 158 168-351 3-170 (260)
405 PF13934 ELYS: Nuclear pore co 72.2 64 0.0014 27.8 11.4 71 328-402 114-184 (226)
406 PF14863 Alkyl_sulf_dimr: Alky 71.9 24 0.00052 27.6 7.0 62 375-439 58-119 (141)
407 PF10579 Rapsyn_N: Rapsyn N-te 71.4 12 0.00026 25.5 4.5 46 334-379 18-64 (80)
408 PF10366 Vps39_1: Vacuolar sor 71.3 32 0.00069 25.4 7.3 27 289-315 41-67 (108)
409 PF11846 DUF3366: Domain of un 70.8 20 0.00042 30.0 7.0 35 387-421 141-175 (193)
410 KOG3824 Huntingtin interacting 70.3 8.3 0.00018 34.1 4.5 58 370-427 128-187 (472)
411 PF08424 NRDE-2: NRDE-2, neces 68.9 95 0.0021 28.5 15.8 160 286-456 18-212 (321)
412 KOG2471 TPR repeat-containing 68.8 1.1E+02 0.0025 29.4 13.8 46 392-437 337-382 (696)
413 PF04910 Tcf25: Transcriptiona 68.7 1E+02 0.0022 28.8 16.6 125 120-249 37-167 (360)
414 PF10366 Vps39_1: Vacuolar sor 68.6 45 0.00098 24.7 8.2 27 392-418 41-67 (108)
415 COG4976 Predicted methyltransf 66.9 17 0.00037 30.8 5.4 53 332-386 5-57 (287)
416 TIGR02508 type_III_yscG type I 66.9 46 0.001 24.1 9.4 78 237-317 21-98 (115)
417 KOG0889 Histone acetyltransfer 66.1 3.4E+02 0.0073 33.8 23.4 39 393-431 2815-2853(3550)
418 PHA02875 ankyrin repeat protei 66.1 1.3E+02 0.0027 28.8 17.3 39 7-46 17-57 (413)
419 KOG0686 COP9 signalosome, subu 66.0 1.2E+02 0.0026 28.5 15.2 62 188-249 152-215 (466)
420 COG4455 ImpE Protein of avirul 65.4 85 0.0018 26.7 11.6 57 291-348 5-61 (273)
421 cd00280 TRFH Telomeric Repeat 65.2 48 0.001 27.2 7.4 37 365-401 118-154 (200)
422 PRK10941 hypothetical protein; 65.1 55 0.0012 29.0 8.7 68 362-429 185-254 (269)
423 COG2912 Uncharacterized conser 62.8 35 0.00077 29.9 6.9 60 394-453 185-244 (269)
424 PF11846 DUF3366: Domain of un 62.7 30 0.00066 28.8 6.6 54 333-386 119-172 (193)
425 KOG2062 26S proteasome regulat 61.2 2E+02 0.0043 29.5 22.3 55 396-450 507-563 (929)
426 COG4941 Predicted RNA polymera 59.1 1.4E+02 0.0031 27.2 11.8 121 301-426 270-401 (415)
427 KOG4567 GTPase-activating prot 59.1 1.4E+02 0.003 27.0 9.6 57 109-167 264-320 (370)
428 COG0735 Fur Fe2+/Zn2+ uptake r 58.8 70 0.0015 25.2 7.5 64 207-271 7-70 (145)
429 KOG0292 Vesicle coat complex C 58.6 16 0.00035 37.4 4.6 52 358-415 672-723 (1202)
430 PHA02537 M terminase endonucle 58.0 1.2E+02 0.0027 26.1 9.2 33 390-422 169-210 (230)
431 COG5191 Uncharacterized conser 57.4 21 0.00046 31.8 4.6 80 353-432 102-184 (435)
432 PF11838 ERAP1_C: ERAP1-like C 57.1 1.6E+02 0.0034 27.0 15.7 245 22-266 41-320 (324)
433 PF04190 DUF410: Protein of un 57.0 1.4E+02 0.003 26.4 15.9 27 154-180 89-115 (260)
434 PF11817 Foie-gras_1: Foie gra 56.2 86 0.0019 27.4 8.5 55 395-449 183-243 (247)
435 KOG2297 Predicted translation 56.1 1.5E+02 0.0033 26.6 9.6 18 360-377 323-340 (412)
436 COG4259 Uncharacterized protei 55.9 57 0.0012 23.5 5.6 38 394-431 76-113 (121)
437 KOG4642 Chaperone-dependent E3 55.4 16 0.00035 31.2 3.5 54 397-450 17-70 (284)
438 KOG4814 Uncharacterized conser 55.3 43 0.00094 33.2 6.7 87 368-454 364-458 (872)
439 PF04090 RNA_pol_I_TF: RNA pol 54.4 1.3E+02 0.0028 25.2 9.9 28 289-316 43-70 (199)
440 COG0790 FOG: TPR repeat, SEL1 54.3 1.6E+02 0.0035 26.4 20.6 17 201-217 128-144 (292)
441 KOG0376 Serine-threonine phosp 54.2 23 0.00051 33.6 4.7 103 294-401 11-116 (476)
442 PF10255 Paf67: RNA polymerase 54.1 1.5E+02 0.0033 28.1 9.9 55 396-450 128-190 (404)
443 KOG4077 Cytochrome c oxidase, 53.9 97 0.0021 23.6 7.0 46 205-250 68-113 (149)
444 COG5187 RPN7 26S proteasome re 53.7 1.4E+02 0.003 26.7 8.7 25 54-78 117-141 (412)
445 smart00777 Mad3_BUB1_I Mad3/BU 53.0 65 0.0014 24.6 6.1 40 409-448 82-123 (125)
446 PF11817 Foie-gras_1: Foie gra 52.8 60 0.0013 28.4 6.9 18 331-348 187-204 (247)
447 PF11663 Toxin_YhaV: Toxin wit 52.4 17 0.00037 27.8 2.9 21 66-87 109-129 (140)
448 PRK13342 recombination factor 52.3 2.2E+02 0.0048 27.3 15.6 115 203-332 154-275 (413)
449 KOG4279 Serine/threonine prote 52.1 2.5E+02 0.0053 29.0 11.1 21 196-216 376-396 (1226)
450 PF11663 Toxin_YhaV: Toxin wit 51.6 18 0.00039 27.7 2.9 33 196-230 105-137 (140)
451 COG0735 Fur Fe2+/Zn2+ uptake r 51.4 1E+02 0.0022 24.3 7.3 60 77-138 11-70 (145)
452 PF08424 NRDE-2: NRDE-2, neces 51.4 2E+02 0.0043 26.5 13.8 112 273-385 48-181 (321)
453 KOG2908 26S proteasome regulat 51.4 1.9E+02 0.0042 26.5 9.5 52 367-418 84-143 (380)
454 KOG0686 COP9 signalosome, subu 50.9 87 0.0019 29.3 7.5 92 359-450 151-255 (466)
455 PF09454 Vps23_core: Vps23 cor 50.2 46 0.00099 21.9 4.3 49 183-232 5-53 (65)
456 PRK10564 maltose regulon perip 50.1 37 0.00081 30.3 5.1 38 188-225 259-296 (303)
457 PRK10564 maltose regulon perip 49.6 34 0.00073 30.5 4.7 46 83-128 251-297 (303)
458 PF10255 Paf67: RNA polymerase 49.5 2E+02 0.0044 27.3 10.0 57 259-315 125-192 (404)
459 PF14689 SPOB_a: Sensor_kinase 49.3 50 0.0011 21.4 4.4 24 225-248 27-50 (62)
460 KOG2422 Uncharacterized conser 48.9 2.8E+02 0.0062 27.5 15.0 78 193-270 349-430 (665)
461 KOG0292 Vesicle coat complex C 48.9 1.7E+02 0.0036 30.7 9.7 152 5-181 624-779 (1202)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 48.4 1.2E+02 0.0026 23.2 8.7 43 340-383 81-124 (126)
463 KOG0403 Neoplastic transformat 48.2 2.6E+02 0.0056 26.8 16.4 333 23-373 217-589 (645)
464 KOG1308 Hsp70-interacting prot 47.9 5.6 0.00012 35.8 -0.2 64 401-464 125-188 (377)
465 TIGR02270 conserved hypothetic 47.6 2.6E+02 0.0057 26.8 23.9 191 175-385 89-279 (410)
466 PF11848 DUF3368: Domain of un 47.5 63 0.0014 19.6 5.2 32 197-228 13-44 (48)
467 KOG3807 Predicted membrane pro 47.2 2.3E+02 0.0049 25.9 14.1 21 407-427 379-399 (556)
468 KOG3807 Predicted membrane pro 47.2 2.3E+02 0.0049 25.9 12.0 53 364-416 281-337 (556)
469 PF10516 SHNi-TPR: SHNi-TPR; 46.8 55 0.0012 18.7 3.9 27 392-418 3-29 (38)
470 PF14689 SPOB_a: Sensor_kinase 46.5 48 0.001 21.5 4.0 24 326-349 27-50 (62)
471 KOG2063 Vacuolar assembly/sort 46.5 3.9E+02 0.0085 28.5 17.6 193 224-434 507-742 (877)
472 PF14432 DYW_deaminase: DYW fa 44.8 25 0.00055 26.4 2.9 28 460-491 2-29 (116)
473 COG5191 Uncharacterized conser 44.1 52 0.0011 29.5 4.9 69 388-456 105-174 (435)
474 PHA02875 ankyrin repeat protei 42.7 3.1E+02 0.0067 26.2 16.4 14 134-147 76-89 (413)
475 KOG0687 26S proteasome regulat 42.3 2.7E+02 0.0059 25.4 11.6 25 324-348 106-130 (393)
476 COG4259 Uncharacterized protei 41.8 1.1E+02 0.0023 22.2 5.2 43 408-450 55-98 (121)
477 PF09986 DUF2225: Uncharacteri 41.7 2.1E+02 0.0045 24.4 8.2 86 335-420 90-195 (214)
478 TIGR02710 CRISPR-associated pr 41.1 3.1E+02 0.0068 25.8 11.4 27 296-322 139-165 (380)
479 TIGR02270 conserved hypothetic 40.8 3.4E+02 0.0073 26.1 24.5 22 325-346 255-276 (410)
480 PRK09462 fur ferric uptake reg 40.6 1.8E+02 0.0039 22.9 7.8 62 210-272 6-68 (148)
481 PF13762 MNE1: Mitochondrial s 40.1 1.9E+02 0.004 22.9 10.2 88 125-236 41-130 (145)
482 KOG1839 Uncharacterized protei 39.6 3E+02 0.0066 30.4 10.4 122 330-452 940-1085(1236)
483 PF07575 Nucleopor_Nup85: Nup8 39.5 3.4E+02 0.0074 27.4 10.7 76 206-283 390-465 (566)
484 PF04781 DUF627: Protein of un 39.4 1.3E+02 0.0028 22.4 5.6 86 364-449 2-103 (111)
485 KOG2581 26S proteasome regulat 39.2 2.7E+02 0.0058 26.3 8.7 136 321-456 125-279 (493)
486 PF12862 Apc5: Anaphase-promot 39.0 1.4E+02 0.0031 21.2 7.5 21 330-350 49-69 (94)
487 PRK11639 zinc uptake transcrip 38.8 2.1E+02 0.0046 23.2 7.9 67 203-270 8-74 (169)
488 COG5108 RPO41 Mitochondrial DN 38.4 3.1E+02 0.0067 27.8 9.5 86 128-213 33-130 (1117)
489 PF14669 Asp_Glu_race_2: Putat 38.4 2.3E+02 0.0051 23.6 12.9 54 227-280 138-205 (233)
490 KOG3824 Huntingtin interacting 38.3 50 0.0011 29.5 4.0 51 332-385 126-177 (472)
491 cd07153 Fur_like Ferric uptake 38.2 1.1E+02 0.0024 22.7 5.6 48 93-140 5-52 (116)
492 PF09670 Cas_Cas02710: CRISPR- 37.9 3.6E+02 0.0078 25.6 12.1 57 193-250 138-198 (379)
493 PF12583 TPPII_N: Tripeptidyl 37.8 1.5E+02 0.0032 22.8 5.8 39 399-437 85-123 (139)
494 PF15015 NYD-SP12_N: Spermatog 36.8 48 0.001 31.0 3.8 48 396-443 234-281 (569)
495 KOG0545 Aryl-hydrocarbon recep 36.3 3E+02 0.0064 24.1 9.1 69 360-428 232-302 (329)
496 PF10475 DUF2450: Protein of u 36.1 3.3E+02 0.0071 24.6 10.7 23 293-315 133-155 (291)
497 COG2256 MGS1 ATPase related to 35.1 4E+02 0.0087 25.3 11.8 52 184-235 244-298 (436)
498 KOG1839 Uncharacterized protei 34.7 3.5E+02 0.0077 29.9 10.0 95 324-418 1017-1127(1236)
499 PF01475 FUR: Ferric uptake re 34.6 1.3E+02 0.0027 22.7 5.4 49 92-140 11-59 (120)
500 PRK14700 recombination factor 34.5 3.5E+02 0.0077 24.5 15.4 68 185-252 122-197 (300)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-74 Score=591.19 Aligned_cols=495 Identities=34% Similarity=0.639 Sum_probs=459.4
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+.+++++..|.+.|+.||+.++|.++..| ++.|++++|.++|+.|++||..+||++|.+|++.|++++|+++|++|.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y-~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMY-VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHH-hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34667777888888888888889999999 99999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSM 161 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 161 (502)
|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+++
T Consensus 283 -g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~l 360 (857)
T PLN03077 283 -SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAM 360 (857)
T ss_pred -CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 6777777777
Q ss_pred HHHHHhcCCHHHHHHHH---------------------------------------------------------------
Q 046039 162 IIGLAKCGEIDESRRLF--------------------------------------------------------------- 178 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~--------------------------------------------------------------- 178 (502)
+.+|++.|++++|+++|
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 77777655555555444
Q ss_pred -------HccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 179 -------DKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 179 -------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
++|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 444455666677777777777777777777777765 589999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
+.++..++++|+.+|++.|++++|..+|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 9999999999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
|.+.|.+++|.++|+.|.+.+++.|+..+|+.++.+|++.|++++|.+++++|..+|+..+|++|+.+|...|+.+.+..
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999976799999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHH
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLN 491 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 491 (502)
..+++++++|+++..|..|+++|...|+|++|.++.+.|++.|++++||+||+++++++|.|+.++++||+..+||..|.
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 046039 492 DLGLLIQEMG 501 (502)
Q Consensus 492 ~~~~~~~~~~ 501 (502)
.+..+|++.|
T Consensus 759 ~l~~~~~~~g 768 (857)
T PLN03077 759 GFYEKMKASG 768 (857)
T ss_pred HHHHHHHhCC
Confidence 9999999876
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-73 Score=572.40 Aligned_cols=494 Identities=28% Similarity=0.493 Sum_probs=479.9
Q ss_pred chHHHHHHHHHHhC-CCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHH
Q 046039 2 KDLKKIHAHLIKTG-LAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFI 76 (502)
Q Consensus 2 ~~~~~i~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 76 (502)
+.|.+++..|.+.+ ..||..+|+.++..| ++.++++.|.+++..+.+ ||..+||.++..|++.|+++.|.++|+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~-~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEAC-IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 46888999998865 789999999999999 999999999999999874 999999999999999999999999999
Q ss_pred HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---CC
Q 046039 77 DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---EF 153 (502)
Q Consensus 77 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~ 153 (502)
+|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+.. .+
T Consensus 183 ~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 183 EMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred cCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 996 3799999999999999999999999999999999999999999999999999999999999877654 68
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
|..+|++|+.+|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 234 LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
.|+++.|.+++..+.+.|++|+..+++.|+.+|++.|++++|.++|++|.++|+.+|+.||.+|++.|+.++|+++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 046039 314 QSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIW 393 (502)
Q Consensus 314 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 393 (502)
.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+.+++.|+..+|+.++.+|++.|++++|.++++++...|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999987799999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEE
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEF 473 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (502)
++|+.+|...|+.+.|..++++++++.|++...|..|+.+|.+.|++++|.++++.|.+.|+.+.||++|+++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 474 VAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 474 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
+.+++.||+..+||..|..+..+|.+.|
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.2e-62 Score=499.46 Aligned_cols=449 Identities=27% Similarity=0.495 Sum_probs=395.6
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+.+.+++..+.+.|..|+...+|.++..| ++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~-~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~ 181 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMF-VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHH-HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34667788888888888888889999999 99999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeH---
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAW--- 158 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 158 (502)
|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|++|. .+|..+|
T Consensus 182 -g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~l 259 (857)
T PLN03077 182 -GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAM 259 (857)
T ss_pred -CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHH
Confidence 99999999999999888888888888888888888888888888888888888888888888887776 3444444
Q ss_pred -------------------------------------------------------------------HHHHHHHHhcCCH
Q 046039 159 -------------------------------------------------------------------NSMIIGLAKCGEI 171 (502)
Q Consensus 159 -------------------------------------------------------------------~~l~~~~~~~~~~ 171 (502)
++++.+|++.|++
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 4444555557777
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 172 DESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
++|.++|++|..||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|
T Consensus 340 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 77788888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
+.++..+++.|+.+|++.|++++|.++|++|.++++.+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
|++.|+.+.+.+++..+.+. |+.++..+++.|+.+|++.|++++|.++|+.+ .||..+|++++.+|.+.|+.++|.+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999887 88888888888888888888888888888887 6788888888888888888888888
Q ss_pred HHHHHHhc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHhh-hcCCccC
Q 046039 412 AAKQIIEL--DKNESCGYVLMSNLYAASYQFEEAMEERLLMK-EVKIEKE 458 (502)
Q Consensus 412 ~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 458 (502)
+|++|.+. .|+. .+|..++.+|.+.|++++|.++|+.|. +.|+.|+
T Consensus 576 lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 576 LFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 88888763 3544 445666667888888888888888887 5666664
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-60 Score=480.06 Aligned_cols=437 Identities=14% Similarity=0.243 Sum_probs=262.6
Q ss_pred CChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH
Q 046039 18 KDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS 93 (502)
Q Consensus 18 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 93 (502)
|+..+|+.+|..| ++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.
T Consensus 435 pd~~Tyn~LL~a~-~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVC-ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 4555556666665 566666666666665543 55566666666666666666666666666555 56666666666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-----CCCeeeHHHHHHHHHhc
Q 046039 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-----EFDVVAWNSMIIGLAKC 168 (502)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 168 (502)
+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .||..+|++++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 6666666666666666666666666666666666666666666666666666665532 35555666666666666
Q ss_pred CCHHHHHHHHHccC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 046039 169 GEIDESRRLFDKMV----SRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244 (502)
Q Consensus 169 ~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 244 (502)
|++++|.++|+.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666653 24455666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046039 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP----KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP 320 (502)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 320 (502)
+.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .++..+|+.||.+|++.|++++|.++|++|...|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 666666666666666666666666666666666666553 3455566666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----c-------------------CCHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----A-------------------GLLEEA 377 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A 377 (502)
|..||+.++.+|++.|+++.|.+++..|.+. |+.||..+|+.++..|.+ . +..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 6666666666666666666666666666555 666666666665544221 1 112445
Q ss_pred HHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCC-chHHHHHHHHhhh
Q 046039 378 EKLIRSMPSD---PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE-LDKNESCGYVLMSNLYAASYQ-FEEAMEERLLMKE 452 (502)
Q Consensus 378 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 452 (502)
..+|++|... ||..+|+.++.+++..+....+..+++.+.. -.+.+...|..|+..+ |+ .++|..++++|..
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~ 908 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHH
Confidence 5566655542 5666666666555555555555555555432 2234455666666655 33 3578888999988
Q ss_pred cCCccCCc
Q 046039 453 VKIEKEPG 460 (502)
Q Consensus 453 ~~~~~~~~ 460 (502)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 88877654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-60 Score=481.44 Aligned_cols=453 Identities=15% Similarity=0.214 Sum_probs=420.9
Q ss_pred chHHHHHHHHHHhCC-CCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 2 KDLKKIHAHLIKTGL-AKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
+.|.+++++|.+.|+ +|+...++.++..| .+.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~-~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-KKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 578999999999996 56777888889888 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---CCCeee
Q 046039 81 TSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---EFDVVA 157 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 157 (502)
. |+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .||..+
T Consensus 466 ~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 466 A-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred c-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999965 699999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMV------SRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNAC 231 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 231 (502)
|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999993 5899999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHH
Q 046039 232 AKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK----GLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+. +..+|+.++.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999864 5679999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS- 386 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 386 (502)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.+++.+|..
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999887 9999999999999999999999999999999976
Q ss_pred --CCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCC
Q 046039 387 --DPDAIIWGSLLSACRK----H-------------------GNIEMAKQAAKQIIELD--KNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 387 --~~~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 439 (502)
.||..+|+.++..|.+ . +..+.|..+|++|++.. |+ ..+|..+..++...+.
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHD 862 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccccc
Confidence 3999999999876542 1 22478999999999844 55 4455666678888899
Q ss_pred chHHHHHHHHhhhcCCccC
Q 046039 440 FEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 440 ~~~A~~~~~~~~~~~~~~~ 458 (502)
.+.+..+++.|...+..+.
T Consensus 863 ~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQK 881 (1060)
T ss_pred HHHHHHHHHHhccCCCCcc
Confidence 9999999888876665443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-56 Score=448.33 Aligned_cols=450 Identities=21% Similarity=0.326 Sum_probs=407.7
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+.+.+++..|.+.|+.||+.+||.++..| ++.|+++.|.++|++|++||..+||.++.+|++.|++++|+++|++|.+.
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y-~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMH-VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHH-hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSM 161 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 161 (502)
|+.|+..+|..++.+|+..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. ++|+.+|+++
T Consensus 219 -g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~l 296 (697)
T PLN03081 219 -GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSM 296 (697)
T ss_pred -CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcc----CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch
Q 046039 162 IIGLAKCGEIDESRRLFDKM----VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 237 (502)
+.+|++.|+.++|.++|++| ..||..+|+.++.+|++.|++++|.+++..|.+.|++||..+|+.++.+|++.|++
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK----KGLSCWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+ +|..+|+.++.+|++.|..++|.++|+.|
T Consensus 377 ~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 377 EDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999985 47899999999999999999999999999875 56779999999999999999999999999
Q ss_pred HH-CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CH
Q 046039 314 QS-SNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DA 390 (502)
Q Consensus 314 ~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~ 390 (502)
.+ .|+.|+..+|+.++.++++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.. .| +.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 86 689999999999999999999999999999876 6789999999999999999999999999998864 35 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCcchHHHHH---HHHH--------hcCCchHHHHHHHHhhhcCCcc
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDK--NESCGYVLMS---NLYA--------ASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
.+|..|++.|.+.|++++|.++++.|.+.+- .....|..+. ..+. ...-++...++..+|.+.|..|
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999997441 1111110000 0000 0111345566788888888877
Q ss_pred CCcee
Q 046039 458 EPGCS 462 (502)
Q Consensus 458 ~~~~~ 462 (502)
+....
T Consensus 609 ~~~~~ 613 (697)
T PLN03081 609 EENEL 613 (697)
T ss_pred Ccchh
Confidence 65543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-30 Score=273.63 Aligned_cols=432 Identities=13% Similarity=0.053 Sum_probs=241.3
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
.+.|++++|..+++.+.. ++..+|..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|++++|.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 344444444444444332 23334444455555555555555555554432 1222233444444445555555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC---
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--- 183 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 183 (502)
..++.+.+.+ +.+..++..+...+.+.|+.++|...++++.. +.+...+..+...+...|++++|..+++.+..
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 5555554443 22444455555555555555555555554432 23334444555555555555555555555532
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
.+...|..++.++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 234455555555556666666666666555543 3344455555555555566666666665555543 33445555555
Q ss_pred HHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
..+...|++++|..+++.+.+. +...+..++..+...|++++|...|+++...+ |+..++..++.++...|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 5566666666666666555432 23345555666666666666666666666543 333555556666666666666
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 341 AKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
|.+.++.+.+ ..+.+...+..+...|...|++++|...|+++... +++..+..++..+...|+ .+|+..++++++
T Consensus 755 A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 6666666665 33445566666666666677777777777666532 345566666667777666 667777777777
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 046039 419 LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQ 498 (502)
Q Consensus 419 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 498 (502)
..|+++.++..++.++...|++++|.++++++.+.+ |.+++++..++.++-+.|
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA--------------------------PEAAAIRYHLALALLATG 885 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------CCChHHHHHHHHHHHHcC
Confidence 777777777777777777777777777777666443 445667777777666554
Q ss_pred h
Q 046039 499 E 499 (502)
Q Consensus 499 ~ 499 (502)
+
T Consensus 886 ~ 886 (899)
T TIGR02917 886 R 886 (899)
T ss_pred C
Confidence 4
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-30 Score=273.17 Aligned_cols=438 Identities=13% Similarity=0.065 Sum_probs=383.3
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhH
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDML 79 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 79 (502)
.+..++..+.+. .++++.+++.+...+ ...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+.+.
T Consensus 449 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKK-QPDNASLHNLLGAIY-LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHh-CCCCcHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666666653 456677788777777 899999999999999764 455678888899999999999999999998
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeee
Q 046039 80 VTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVA 157 (502)
Q Consensus 80 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~ 157 (502)
.. .+.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|..+++.+.. +.+...
T Consensus 527 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 527 TI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred Hh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 75 34566788889999999999999999999998875 45777888999999999999999999998865 456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL 234 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 234 (502)
|..+..++...|++++|...|+.+.+ .++..+..+..++.+.|++++|...|+++.+.. +.+..++..++..+...
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 99999999999999999999998844 356678899999999999999999999999875 66788999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSG 312 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (502)
|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+... +..++..++.++...|++++|...+++
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999886 557788888999999999999999999987653 445778889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CH
Q 046039 313 LQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DA 390 (502)
Q Consensus 313 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~ 390 (502)
+.+.. +.+...+..+...|...|++++|.++|+.+.+. .+.+...++.++..+...|+ .+|..+++++... | ++
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 99874 447788899999999999999999999999874 46678889999999999999 8899999987642 3 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
..+..++..+...|++++|.+.++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.7e-23 Score=218.10 Aligned_cols=414 Identities=13% Similarity=0.055 Sum_probs=329.6
Q ss_pred HhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHH------------
Q 046039 28 AFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYP------------ 92 (502)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~------------ 92 (502)
...+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+...-.++...+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3333678999999999999865 3 667889999999999999999999999986522111211121
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCC
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGE 170 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 170 (502)
.....+.+.|++++|...++++++.. +.+...+..+..++...|++++|.+.|++... +.+...+..+...+. .++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 22345678899999999999999975 44677888899999999999999999998765 334556666666664 467
Q ss_pred HHHHHHHHHccCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchH
Q 046039 171 IDESRRLFDKMVSRN------------TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIR 238 (502)
Q Consensus 171 ~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (502)
.++|+..++.+.... ...+..+...+...|++++|++.|++.++.. +.+...+..+...+...|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999998775421 2235567788889999999999999999875 556778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc-------------chHHHHHHHHHhcCChHH
Q 046039 239 QGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL-------------SCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~ 305 (502)
+|...++++.+.. +.++..+..+...+...++.++|...++.+..... ..+..++..+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998764 33555555566677889999999999998865321 122345677889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
|..+++. .+++...+..+...+...|++++|+..|+.+.+. -+.+...+..++..|...|++++|...++.+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2445567778888999999999999999999874 34567888899999999999999999999887
Q ss_pred CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 386 SD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES------CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 386 ~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.. | +...+..++.++...|++++|.+.++++++..|+++ .++..++.++...|++++|+..++....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 53 4 566778889999999999999999999999776654 3666778999999999999999988753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.1e-23 Score=218.53 Aligned_cols=445 Identities=12% Similarity=0.060 Sum_probs=225.2
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
+.|.+.++.+.+.+ +|+...............|+.++|++.|+++.+ | +...+..+...+...|++++|+..++++
T Consensus 129 ~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 129 EEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34555566655432 333222221222221344677777777777664 2 3445666666666777777777777666
Q ss_pred HhcCCC---------------CCCcc---cHH----------------------------------HHHHHHHhcCCchh
Q 046039 79 LVTSPI---------------QPQRL---TYP----------------------------------SLFKAYAQLGLARD 106 (502)
Q Consensus 79 ~~~~~~---------------~p~~~---~~~----------------------------------~l~~~~~~~~~~~~ 106 (502)
...... .++.. .+. .....+...|++++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 432100 00000 000 00112233444444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCee---eHH------------HHHHHHHhcCC
Q 046039 107 GAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVV---AWN------------SMIIGLAKCGE 170 (502)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~---~~~------------~l~~~~~~~~~ 170 (502)
|+..|++.++.. +.+..++..+..++.+.|++++|...|++... .|+.. .|. .....+.+.|+
T Consensus 288 A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 288 AIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 444444444432 22344444444444445555555444444332 11110 011 11123334444
Q ss_pred HHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 046039 171 IDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 171 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
+++|+..|+++.. .+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|..+++.+
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l 444 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhC
Confidence 5555544444422 122334444444444455555555554444432 222333333333332 23344444444333
Q ss_pred HHcCCC--------CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 248 VTNCFE--------LNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 248 ~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
...... .....+..+...+...|++++|+..|++..+.+ +..+..+...|.+.|++++|...++++.+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 211000 001122334444555566666666666554432 234455555666666666666666665553
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI---------KHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.. .+...+..+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|..+++.-+
T Consensus 525 ~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p-- 600 (1157)
T PRK11447 525 KP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP-- 600 (1157)
T ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 21 12333333333344556666666666554321 111111 111234455667777777777777332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+++..+..+...+.+.|++++|+..|+++++.+|+++..+..++.+|...|++++|++.++.+.+..
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 3455667788889999999999999999999999999999999999999999999999999877543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=5e-24 Score=192.53 Aligned_cols=358 Identities=13% Similarity=0.099 Sum_probs=181.9
Q ss_pred cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeH-HHHHHHH
Q 046039 88 RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAW-NSMIIGL 165 (502)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~-~~l~~~~ 165 (502)
..+|..+...+-..|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+... .|+.... +.+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 3455555555555555555555555555542 12344555555555555555555555544432 2322221 2223333
Q ss_pred HhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHH
Q 046039 166 AKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEW 242 (502)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 242 (502)
...|++++|...+.+.++.+ ...|+.|...+-.+|+...|+..|++..+.. +.-...|..|...|...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHH
Confidence 44555555555554443321 2345555555555555555555555555442 2223445555555555555555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046039 243 IHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 319 (502)
.|.+..... +....++..+...|...|..+.|+..+++..+.+ +.+|+.|..++-..|++.+|...|.+..... .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p 351 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-P 351 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-C
Confidence 555554432 2234444455555555555555555555554432 2255555555555555555555555555432 1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHH
Q 046039 320 PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLL 397 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~ 397 (502)
.-..+.+.|...+...|.++.|..+|..... -.+.-...++.|...|.++|++++|+.-|++... +|. ...++.++
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 1234455555555555555555555555543 1112234445555555555555555555555443 243 23555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
..|-..|+.+.|++.+.+++..+|.-...+..|+.+|...|+..+|+.-++...
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-23 Score=190.27 Aligned_cols=379 Identities=14% Similarity=0.122 Sum_probs=325.6
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchh-HHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP-QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF-IHNTII 130 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 130 (502)
.+|+.+...+-..|+++.|+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 46888899999999999999999999974 45 4668999999999999999999999999885 34443 345566
Q ss_pred HHHHhCCChhHHHHHHhhcCC-CC-CeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCChHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDT-EF-DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKFKEA 205 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 205 (502)
..+-..|++++|...|.+... .| -...|+.|...+-..|++..|+..|++.++-| ...|-.|...|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 667778999999998877554 44 45689999999999999999999999996644 45789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 046039 206 LELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK 285 (502)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (502)
...|....... +.....+..+...|...|.++.|+..|++.++.. +.=+..|+.|..++-..|++.+|.+++.+...-
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999988763 4556778888888999999999999999999874 233788999999999999999999999988764
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhH
Q 046039 286 ---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD-YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKH 360 (502)
Q Consensus 286 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 360 (502)
...+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-..|++++|+..+++.. .+.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3558899999999999999999999998884 444 4678889999999999999999999988 56776 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
|+.+...|...|+.+.|.+.+.+... .|. ...++.|...|...|+..+|++.|+.+++++|+.+..+..++.++.--.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999988764 454 4588999999999999999999999999999999999999998887777
Q ss_pred CchHH
Q 046039 439 QFEEA 443 (502)
Q Consensus 439 ~~~~A 443 (502)
+|.+-
T Consensus 505 dw~D~ 509 (966)
T KOG4626|consen 505 DWTDY 509 (966)
T ss_pred cccch
Confidence 76653
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=9.4e-22 Score=195.72 Aligned_cols=391 Identities=12% Similarity=0.023 Sum_probs=280.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (502)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|+..++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34556667777888888888887774 45666677777777788888888888888877764 335667777778888
Q ss_pred hCCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhcCCHHHHHHHHHcc-----------------------------CC
Q 046039 135 NCGFLSEARLMFDEVDTE--FDVVAWNSMIIGLAKCGEIDESRRLFDKM-----------------------------VS 183 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------------------~~ 183 (502)
..|++++|...|...... .+......++..+........+...++.- .+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 888888887666543211 11111111111111100111111111111 01
Q ss_pred CCh---hhHHHHHHHH---HhCCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 046039 184 RNT---VSWNSMISGY---VRNVKFKEALELFREMQEQN-I-KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN 255 (502)
Q Consensus 184 ~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (502)
.+. ..+..+...+ ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|...++..++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 011 1111111111 23467999999999998765 2 3345667788888889999999999999999874 334
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 667888899999999999999999987653 456899999999999999999999999998642 3567778888899
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-------HH-HHHHHHHHHHhc
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-------AI-IWGSLLSACRKH 403 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-------~~-~~~~l~~~~~~~ 403 (502)
.+.|++++|+..|+.... ..+.+...++.+..++...|++++|...|++... .|+ .. .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999986 3455678889999999999999999999988654 232 11 122222334457
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
|++++|.+.++++++++|++...+..++.++.+.|++++|++.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=2.8e-20 Score=188.61 Aligned_cols=437 Identities=11% Similarity=0.014 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
.|...+....+. .|+.......+..++.+.|++++|+..+++..+ |+-..|..++..+ +++.+|..+++++..
T Consensus 62 ~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 456667777664 566555555555544899999999999999876 5444444444333 888888899999887
Q ss_pred cCCCCCCcccHHHHHHHH-----HhcCCchhHHHHHHHHHHhCCCCchhHHHHH-HHHHHhCCChhHHHHHHhhcCC-CC
Q 046039 81 TSPIQPQRLTYPSLFKAY-----AQLGLARDGAQLHGRVVKQGLEFDQFIHNTI-IYMYANCGFLSEARLMFDEVDT-EF 153 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-~~ 153 (502)
. .+-+..++..+.... ....+.++|.+.++ .....+.|+..+.... ..+|...|++++|+.++.++.+ .|
T Consensus 137 ~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 137 Q--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred h--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 5 222333444444430 11233355555555 3333333344444444 7788888888888888877765 22
Q ss_pred -CeeeHHHHHHHHHh-cCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHH---
Q 046039 154 -DVVAWNSMIIGLAK-CGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK-PSEFTMVSL--- 227 (502)
Q Consensus 154 -~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l--- 227 (502)
+......+..+|.. .++ +.+..+++...+.++..+..++..|.+.|+.++|.++++++...... |...++..+
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r 292 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSK 292 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHh
Confidence 33334555556666 355 66666666544556677777777777777777777777665432111 111111100
Q ss_pred ---------------------------HHHHh------------------------------------------------
Q 046039 228 ---------------------------LNACA------------------------------------------------ 232 (502)
Q Consensus 228 ---------------------------l~~~~------------------------------------------------ 232 (502)
+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 293 YSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE 372 (987)
T ss_pred ccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC
Confidence 11111
Q ss_pred ---------------ccCchHHHHHHHHHHHHc-C-CCCchhHHHHHHHHHHhc--------------------------
Q 046039 233 ---------------KLGAIRQGEWIHNFLVTN-C-FELNTIVVTAIIDMYCKC-------------------------- 269 (502)
Q Consensus 233 ---------------~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------------------- 269 (502)
..|+.++|..+++..... + ...+......++..|.+.
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 122333333333333221 0 011122222333333333
Q ss_pred -------------------------------------CChHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHH
Q 046039 270 -------------------------------------GCPERALQVFNTVPKKGLSCWNSMVFG--LAMNGYENEAIKLF 310 (502)
Q Consensus 270 -------------------------------------g~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~ 310 (502)
++.++|...+.+.....+..+..+..+ +...|++++|...|
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 233333333333222222223322222 24566666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 046039 311 SGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD 389 (502)
Q Consensus 311 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 389 (502)
+++... .|+...+..+..++...|+.++|...++...+. . +.+...+..+.....+.|++++|...+++... .|+
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 665443 233333444555566666666666666666543 1 22222222333333445777777777766654 366
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
...|..++.++.+.|++++|+..++++++++|+++..+..++.++...|++++|+..+++..+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777777777777777777777777777777777777777777777777777776654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1e-21 Score=185.92 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=187.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPS---EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+|+.+.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444555555555555554444321111 1233444444555555555555555554432 233444445555
Q ss_pred HHHhcCChHHHHHHHhcCCCCCc--------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 265 MYCKCGCPERALQVFNTVPKKGL--------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
.+.+.|++++|.+.++.+.+.++ ..+..++..+...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 55555555555555554433211 134456667778888888888888887753 224567777888899999
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
++++|.++++++... ........+..++.+|...|++++|...++++.. .|+...+..++..+.+.|++++|...+++
T Consensus 229 ~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 229 DYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998864 2112245678888999999999999999998765 47777778899999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHh--cCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEE
Q 046039 416 IIELDKNESCGYVLMSNLYAA--SYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFV 474 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (502)
+++..|+++.....+...+.. .|+.++|..++++|.++++.++|.+.....+.....+.
T Consensus 308 ~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~~ 368 (389)
T PRK11788 308 QLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTLY 368 (389)
T ss_pred HHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccce
Confidence 999999988655445433323 56999999999999999999999876655554444443
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4.3e-20 Score=183.19 Aligned_cols=356 Identities=12% Similarity=0.007 Sum_probs=204.6
Q ss_pred CCCCChhHHHHHhccCCC------CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCch
Q 046039 32 SPAGDINYAYLVFTQIKK------PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLAR 105 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 105 (502)
.+..+++.---.|...++ .+..-...++..+.++|++.+|..+++..... .+-+...+..++.+....|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHH
Confidence 344555555555555443 22333344455556666666666666666553 2222334444445555566666
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 046039 106 DGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN 185 (502)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 185 (502)
.|...++.+.... +.+...+..+...+...|++++|...+++... ....+
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~-----------------------------l~P~~ 143 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWL-----------------------------AFSGN 143 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------hCCCc
Confidence 6666666666653 23445555566666666666666666655442 01123
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
...+..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3445555555555566666655555554432 2222222222 2244555666666655555544322233333334455
Q ss_pred HHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH
Q 046039 266 YCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENE----AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKV 338 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 338 (502)
+.+.|++++|+..++++.+. +...+..+...+...|++++ |...|++..+..+ .+...+..+...+...|++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCH
Confidence 55566666666666554432 23355556666666666664 6777777776532 2456777777778888888
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 046039 339 NQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAI-IWGSLLSACRKHGNIEMAKQAAKQI 416 (502)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 416 (502)
++|...+++.... .+.+...+..+..+|.+.|++++|...|+++.. .|+.. .+..++.++...|++++|...|+++
T Consensus 301 ~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 301 EKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887753 233455666677788888888888888877764 35443 3344566778888888888888888
Q ss_pred HhcCCCCc
Q 046039 417 IELDKNES 424 (502)
Q Consensus 417 ~~~~p~~~ 424 (502)
++..|++.
T Consensus 379 l~~~P~~~ 386 (656)
T PRK15174 379 IQARASHL 386 (656)
T ss_pred HHhChhhc
Confidence 88877754
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=6.6e-19 Score=178.70 Aligned_cols=433 Identities=10% Similarity=-0.026 Sum_probs=300.4
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhh--------hCCCCChhHHHHHhccCCCC--CcchHHHH-HHHHhcCCChHHH
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFC--------TSPAGDINYAYLVFTQIKKP--NLFIWNTI-IRGFSQSSTPRNA 71 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~--------~~~~~~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a 71 (502)
.+..+++++.+. .|+...+..++... |.+.+....++. .+...| +..+.... ...|.+.|++++|
T Consensus 126 kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 466788888875 55544444443332 266655555655 222234 34444444 8899999999999
Q ss_pred HHHHHHhHhcCCCCCCcccHHHHHHHHHh-cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcC
Q 046039 72 ILLFIDMLVTSPIQPQRLTYPSLFKAYAQ-LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVD 150 (502)
Q Consensus 72 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (502)
+++++++.+. + +.+......+..++.. .++ +.+..+++. .+..++.....++..|.+.|+.++|.++++++.
T Consensus 202 i~lL~~L~k~-~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 202 DTLYNEARQQ-N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhc-C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 9999999986 2 2334445666667776 466 777777543 244688889999999999999999999998876
Q ss_pred C----CCCeeeHHH------------------------------HHHHHHh-----------------------------
Q 046039 151 T----EFDVVAWNS------------------------------MIIGLAK----------------------------- 167 (502)
Q Consensus 151 ~----~~~~~~~~~------------------------------l~~~~~~----------------------------- 167 (502)
. .|...+|.- ++..+.+
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 4 133222211 1222333
Q ss_pred ----------------------------------cCCHHHHHHHHHccCC-C-----ChhhHHHHHHHHHhCCC---hHH
Q 046039 168 ----------------------------------CGEIDESRRLFDKMVS-R-----NTVSWNSMISGYVRNVK---FKE 204 (502)
Q Consensus 168 ----------------------------------~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~ 204 (502)
.|+.++|.++|+.... + +....+-++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 4445555555544422 1 11122344455554443 222
Q ss_pred HHHH----------------------H---HHHHHCCCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh
Q 046039 205 ALEL----------------------F---REMQEQNIKP--SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTI 257 (502)
Q Consensus 205 a~~~----------------------~---~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (502)
+..+ + ...... .++ +...+..+..++.. ++.++|...+....... |+..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 2222 1 111111 123 45566666666655 77778888777777654 4444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
....+...+...|++++|...|+++... ....+..+..++.+.|++++|...+++..+.+. ++...+..+.......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC
Confidence 4444455567899999999999977653 344677778889999999999999999998642 2333344444555667
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|++++|...+++..+. .|+...+..+..++.+.|++++|...|++... .| +...+..++.++...|++++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999854 56788899999999999999999999998875 35 5678899999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+++++.+|+++.++..++.++...|++++|+..+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.8e-19 Score=182.62 Aligned_cols=386 Identities=10% Similarity=-0.025 Sum_probs=196.7
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
...|+.++|+.++..... .+...+..+...+...|++++|.++|++..+. -+.+...+..+...+...|++++|+
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777776553 23334666666777777777777777776653 1233445556666666777777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNT 186 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 186 (502)
..++++++.. +.+.. +..+..++...|+.++|...++++.. +.+...+..+..++...+..+.|+..++.... ++
T Consensus 104 ~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 104 VKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 7777776653 33444 66666677777777777777766554 22333444555556666666666666665544 21
Q ss_pred h--------hHHHHHHHHHh-----CCCh---HHHHHHHHHHHHC-CCCCCH-HHHH----HHHHHHhccCchHHHHHHH
Q 046039 187 V--------SWNSMISGYVR-----NVKF---KEALELFREMQEQ-NIKPSE-FTMV----SLLNACAKLGAIRQGEWIH 244 (502)
Q Consensus 187 ~--------~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~-~~~~----~ll~~~~~~~~~~~a~~~~ 244 (502)
. ....++..... .+++ ++|++.++.+.+. ...|+. ..+. ..+.++...|++++|...|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 11111111111 1112 4445555544432 111111 0110 0012223344555555555
Q ss_pred HHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---
Q 046039 245 NFLVTNCFE-LNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP--- 320 (502)
Q Consensus 245 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--- 320 (502)
+.+.+.+.+ |+ .....+... |...|++++|+..|+++.......
T Consensus 261 ~~ll~~~~~~P~-~a~~~la~~-------------------------------yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 261 QRLKAEGQIIPP-WAQRWVASA-------------------------------YLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred HHhhccCCCCCH-HHHHHHHHH-------------------------------HHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 554444311 11 111112334 444445555555544444322110
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYK----------IKPS---IKHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.......+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 012233333344455555555555555443210 0112 123344555556666666666666665432
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 -P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 -~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
| +...+..++..+...|++++|++.++++++++|+++.++..++.++...|++++|+.+++.+.+..
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3 444556666666666666666666666666666666666666666666666666666666665443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=8.8e-20 Score=184.88 Aligned_cols=366 Identities=11% Similarity=0.039 Sum_probs=251.6
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
....-.+......|+.++|++++...... -+.+...+..+...+...|++++|..++++.++.. +.+...+..+..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 33444566667788888888888888742 13334457788888888888888888888888763 3456677778888
Q ss_pred HHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHH
Q 046039 133 YANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALE 207 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 207 (502)
+...|++++|...++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..++|++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 8888888888888888754 33444 77777778888888888888888744 3 34455666777777788888887
Q ss_pred HHHHHHHCCCCCCHH------HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh---HHHHHH
Q 046039 208 LFREMQEQNIKPSEF------TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP---ERALQV 278 (502)
Q Consensus 208 ~~~~m~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~ 278 (502)
.++.... .|+.. ....++..... ......+++ ++|++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHH
Confidence 7766543 22210 00001111100 000111112 334444
Q ss_pred HhcCCC---CCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 279 FNTVPK---KGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 279 ~~~~~~---~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
++.+.+ .++. .....+.++...|++++|+..|+++.+.+.. |+. ....+..++...|++++|+..|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 443331 1111 1111133445678899999999998887532 332 222356789999999999999999
Q ss_pred hhhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-------------C---HHHHHHHHHHHHhcCCHHH
Q 046039 348 MTETYKIKP--SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-------------D---AIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 348 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------------~---~~~~~~l~~~~~~~~~~~~ 408 (502)
+.......+ .......+..++...|++++|..+++.+... | + ...+..++..+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 876422211 1345667777889999999999999887643 3 2 2345677888999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
|++.++++++..|+++..+..++.++...|++++|++.++++.+..+.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999876644
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.3e-19 Score=179.78 Aligned_cols=358 Identities=11% Similarity=-0.039 Sum_probs=270.3
Q ss_pred hcCCChHHHHHHHHHhHhcCCCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 046039 63 SQSSTPRNAILLFIDMLVTSPIQ-PQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE 141 (502)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 141 (502)
.++.+|+..--.|....++..-. -+..-...++..+.+.|+++.|+.+++..+...+. +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 44555554444444333221111 12223445566667777788887777777776433 44445555555556677777
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 046039 142 ARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE 221 (502)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 221 (502)
|...|+++. .....+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 95 A~~~l~~~l-----------------------------~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~ 144 (656)
T PRK15174 95 VLQVVNKLL-----------------------------AVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNS 144 (656)
T ss_pred HHHHHHHHH-----------------------------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 766666554 1122345677888889999999999999999999864 5567
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----cchHHHHHHHH
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG----LSCWNSMVFGL 297 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~ 297 (502)
..+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+.+ ...+..++..+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 78888999999999999999999988776533 33334333 34788999999999999876643 22445567788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 298 AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ----AKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
...|++++|+..++++...+. .+...+..+...+...|++++ |...++.+... .+.+...+..+...+.+.|+
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999998753 356778888899999999985 89999998863 34457788899999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+++|...++++.. .| +...+..++.++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..++++.
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998765 35 466788899999999999999999999999999988777778889999999999999999987
Q ss_pred hcCCc
Q 046039 452 EVKIE 456 (502)
Q Consensus 452 ~~~~~ 456 (502)
+..++
T Consensus 380 ~~~P~ 384 (656)
T PRK15174 380 QARAS 384 (656)
T ss_pred HhChh
Confidence 76544
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.9e-20 Score=176.05 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=204.7
Q ss_pred HHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHH
Q 046039 97 AYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRR 176 (502)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 176 (502)
.+...|+++.|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...|+....
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------------ 104 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------------ 104 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------------
Confidence 3455666777777777776653 234556666666666666666666666655432211000
Q ss_pred HHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc-
Q 046039 177 LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN- 255 (502)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 255 (502)
.....+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.
T Consensus 105 -------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 105 -------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch
Confidence 011345566667777777777777777776653 44566667777777777777777777777766543221
Q ss_pred ---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 256 ---TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL 329 (502)
Q Consensus 256 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 329 (502)
...+..++..+.+.|++++|...|+++.+. +...+..++..+.+.|++++|.++++++...+......++..++
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 123445666777778888888888776543 23467778888889999999999999988754333346678888
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh---cCC
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRK---HGN 405 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~ 405 (502)
.++...|++++|...++.+... .|+...+..++..+.+.|++++|..+++++.. .|+...+..++..+.. .|+
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc
Confidence 9999999999999999998864 46666778889999999999999999987765 4888888888877764 558
Q ss_pred HHHHHHHHHHHHh
Q 046039 406 IEMAKQAAKQIIE 418 (502)
Q Consensus 406 ~~~A~~~~~~~~~ 418 (502)
.+++...++++++
T Consensus 334 ~~~a~~~~~~~~~ 346 (389)
T PRK11788 334 AKESLLLLRDLVG 346 (389)
T ss_pred chhHHHHHHHHHH
Confidence 8999999998886
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=6.3e-19 Score=175.58 Aligned_cols=387 Identities=12% Similarity=0.004 Sum_probs=287.0
Q ss_pred HhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC-CcccHHHHHHHHHhcCCc
Q 046039 28 AFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP-QRLTYPSLFKAYAQLGLA 104 (502)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 104 (502)
..+ .+.|+++.|+..|++... |+...|..+..++.+.|++++|++.++...+. .| +...+..+..++...|++
T Consensus 135 ~~~-~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 135 NKA-YRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCH
Confidence 344 788999999999999876 88888999999999999999999999999864 44 455888899999999999
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC------------------------------CCC
Q 046039 105 RDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT------------------------------EFD 154 (502)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------~~~ 154 (502)
++|+..+..+...+...+... ..++..+........+...++.-.. .+.
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 999988876655432222211 1111111111111122222211110 000
Q ss_pred -eeeHHHHHHHH---HhcCCHHHHHHHHHccCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 155 -VVAWNSMIIGL---AKCGEIDESRRLFDKMVSR------NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 155 -~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
...+..+...+ ...+++++|.+.|+..... ....|+.+..++...|++++|+..|++.++.. +.+...|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 00111111111 2246889999999988542 34568888899999999999999999998864 4456788
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcC
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNG 301 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (502)
..+..++...|++++|...++.+++.. +.+..++..+...+...|++++|...|++..+.+ ...+..+...+.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 888999999999999999999998875 4567889999999999999999999999887643 447788889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hh-------HHHHHHHHHHhcCC
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IK-------HYSCMVDALGRAGL 373 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~g~ 373 (502)
++++|+..|++..... +.+...+..+..++...|++++|+..|+..... .|+ .. .++.....+...|+
T Consensus 448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999998753 335678888999999999999999999998753 221 11 12222233445799
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+++|..++++... .| +...+..++..+.+.|++++|+..|+++.++.+....
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999999998653 35 4457889999999999999999999999998776443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=9.6e-18 Score=166.90 Aligned_cols=420 Identities=12% Similarity=0.032 Sum_probs=306.1
Q ss_pred CCCCChhHHHHHhccCCC--CCcc-hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 32 SPAGDINYAYLVFTQIKK--PNLF-IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
.+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... ..+........+...+...|+++.|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 589999999999999986 5542 233888888889999999999999872 11222222233355778889999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C-
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R- 184 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~- 184 (502)
++++++.+..+. ++..+..++..+...++.++|++.++++.. .|+...+..++..+...++..+|+..++++.+ |
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 999999998643 577788888999999999999999999885 45555554444445456666669999999854 4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----hccCc---hHHHHHHHHHHHHc
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM------VSLLNAC-----AKLGA---IRQGEWIHNFLVTN 250 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------~~ll~~~-----~~~~~---~~~a~~~~~~~~~~ 250 (502)
+...+..+..++.+.|-...|+++..+-... +.+..... ...++-- ....+ .+.|..-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 5667788888999999999998777653321 11111111 1111110 01122 23444555555542
Q ss_pred C--CCCchhH----HHHHHHHHHhcCChHHHHHHHhcCCCCCc--c--hHHHHHHHHHhcCChHHHHHHHHHHHHCCC--
Q 046039 251 C--FELNTIV----VTAIIDMYCKCGCPERALQVFNTVPKKGL--S--CWNSMVFGLAMNGYENEAIKLFSGLQSSNL-- 318 (502)
Q Consensus 251 ~--~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 318 (502)
- .++.... ..-.+-++...|++.+++..|+.+...+. . +-..++++|...+++++|..+|+++.....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 1 1222122 22345567788999999999999986542 3 556788999999999999999999976431
Q ss_pred ---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC----------CCC---hhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 319 ---KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKI----------KPS---IKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 319 ---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
.++......|.-++...+++++|..+++.+.+.... .|+ ...+..++..+...|++.+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 223344578889999999999999999999863110 122 2233456777889999999999999
Q ss_pred hCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 383 SMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 383 ~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++... | |......+...+...|.+.+|.+.++.+..++|++..+....+.++...|+|++|..+.+.+.+..+
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 98754 5 7888999999999999999999999999999999999999999999999999999998877765544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1e-16 Score=159.56 Aligned_cols=389 Identities=11% Similarity=0.038 Sum_probs=286.7
Q ss_pred HHHhcCCChHHHHHHHHHhHhcCCCCCCcc-cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRL-TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
-...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|+..+++.... -+........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3456899999999999999865 45542 2237888888899999999999999722 12233344444678999999
Q ss_pred hhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHH--hCCChHHHHHHHHHHHH
Q 046039 139 LSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYV--RNVKFKEALELFREMQE 214 (502)
Q Consensus 139 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 214 (502)
+++|.++|+++.. +.++..+..++..+...++.++|++.++++...++.....++.++. ..++..+|++.++++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999876 3456677788889999999999999999997755443333444444 46666669999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch-----hHHHHHHHHH---H--hcCC---hHHHHHHHhc
Q 046039 215 QNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNT-----IVVTAIIDMY---C--KCGC---PERALQVFNT 281 (502)
Q Consensus 215 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~---~--~~g~---~~~A~~~~~~ 281 (502)
.. |.+...+..+..++.+.|-...|.++..+-.+.--+.+. ......++.- . ...+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 85 667888888899999999888888776653321100010 0011111110 0 1112 2334444444
Q ss_pred CCC---CCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 282 VPK---KGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 282 ~~~---~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
+.. .++. +..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 433 2221 223356678889999999999999999886656668889999999999999999999998764
Q ss_pred cC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---------------CHH-HHHHHHHHHHhcCCHHHHH
Q 046039 352 YK----IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---------------DAI-IWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 352 ~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---------------~~~-~~~~l~~~~~~~~~~~~A~ 410 (502)
.+ .+++......|..+|...+++++|..+++.+... | |-. ....++..+.-.|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 21 2334444578899999999999999999988652 2 222 3445677788999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+.+++++...|.|+.+...++.++...|+..+|+..++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.4e-17 Score=157.34 Aligned_cols=417 Identities=14% Similarity=0.075 Sum_probs=254.0
Q ss_pred CCCCChhHHHHHhccCCCC------CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc--cHHHHHHHHHhcCC
Q 046039 32 SPAGDINYAYLVFTQIKKP------NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL--TYPSLFKAYAQLGL 103 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~ 103 (502)
.-.|+++.+..+...+... -..+|..+.+++-..|++++|...|.+..+. .|+.. .+..+...+.+.|+
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhch
Confidence 4556666666655554431 1224555566666666666666666555532 23332 33344555666666
Q ss_pred chhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHH
Q 046039 104 ARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG----FLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRL 177 (502)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 177 (502)
.+.+...|+.+.+.. +.+..+...+...|+..+ ..+.|..++.+... +.|...|..+...+-..+-+. ++..
T Consensus 358 le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~ 435 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDA 435 (1018)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHH
Confidence 666666666665542 334455555555555443 34445555444432 233444444444443332222 1333
Q ss_pred HHcc--------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHhccCchHHH
Q 046039 178 FDKM--------VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQ---NIKPSE------FTMVSLLNACAKLGAIRQG 240 (502)
Q Consensus 178 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a 240 (502)
|... ....+...|.+...+...|++++|...|+..... ...++. .+--.+..+.-..++.+.|
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 3222 1234555666666666666766666666665543 112222 1222334444555666666
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
.+.|..+.+.. +.-+..|-.++......+...+|...++.+.. .++..|..+...+.....+..|.+-|....+.-
T Consensus 516 ~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 516 EEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 66666666543 11122233333222233566667777766554 355677777778888877777777666555432
Q ss_pred -CCCCHHHHHHHHHHHhc------------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 318 -LKPDYISFIAVLTACNH------------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 318 -~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
..+|..+...|...|.. .+..++|+++|.++.+ ..+.|...-|.+.-.++..|++.+|..+|.++
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 23566666666665432 2456788888888886 44567777788888999999999999999988
Q ss_pred CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 385 PSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL--DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 385 ~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.+. ....+|..++.+|...|+|..|+++|+.+++. ..+++.+...|+.++.+.|++.+|.+.+.......+.
T Consensus 673 rEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 673 REATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 753 35568999999999999999999999999973 3567889999999999999999999988777665543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5.7e-16 Score=148.15 Aligned_cols=421 Identities=14% Similarity=0.088 Sum_probs=288.0
Q ss_pred HhhhCCCCChhHHHHHhccCCCCCcchHHHHHHH------HhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhc
Q 046039 28 AFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRG------FSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQL 101 (502)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 101 (502)
..|+++.|+.+.|+..|++..+-|+...++++.. +.....+..+..++...... .+-|+...+.|..-+...
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFK 283 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhc
Confidence 3444556666666666666555333332322211 11223455666666666554 234555677777778888
Q ss_pred CCchhHHHHHHHHHHhCCC--CchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCC--eeeHHHHHHHHHhcCCHHHHHH
Q 046039 102 GLARDGAQLHGRVVKQGLE--FDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFD--VVAWNSMIIGLAKCGEIDESRR 176 (502)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~ 176 (502)
|++..+..+...+...... .-...|-.+.++|-..|++++|...|-+... .++ +..+.-+...+...|+++.+..
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 8888888888888765311 1234467788888889999999888877654 233 3445567788888999999988
Q ss_pred HHHccCC---CChhhHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH-
Q 046039 177 LFDKMVS---RNTVSWNSMISGYVRNV----KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV- 248 (502)
Q Consensus 177 ~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 248 (502)
.|+.+.+ .+..+...|...|...+ ..++|..++.+..+.- +.|...|..+...+-.. +...+..+|..+.
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALD 441 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 8888844 34556667777776664 4577777777776653 55667777766666544 3333466665544
Q ss_pred ---HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------Cc------chHHHHHHHHHhcCChHHHHHHHHH
Q 046039 249 ---TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-------GL------SCWNSMVFGLAMNGYENEAIKLFSG 312 (502)
Q Consensus 249 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (502)
..+-.+.+...|.+...+...|++++|...|...... +. .+--.+...+-..++++.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4555577888999999999999999999988765532 11 1233456666677889999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C
Q 046039 313 LQSSNLKPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS----D 387 (502)
Q Consensus 313 ~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 387 (502)
+... .|+-. .|..++......+...+|..++..... ....++..+..+...+.+...+..|.+-|+.+.. .
T Consensus 522 Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 522 ILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 8875 34443 344443233345778888888888876 4445555666677788888888888875555443 4
Q ss_pred CCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 PDAIIWGSLLSACR------------KHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+|+.....|++.|. ..+..++|+++|.+++..+|.|..+-..++.++...|++.+|..+|.+.++...
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 67777777777665 234678899999999999999999999999999999999999999999988766
Q ss_pred c
Q 046039 456 E 456 (502)
Q Consensus 456 ~ 456 (502)
+
T Consensus 678 ~ 678 (1018)
T KOG2002|consen 678 D 678 (1018)
T ss_pred h
Confidence 3
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=5.6e-17 Score=142.21 Aligned_cols=409 Identities=13% Similarity=0.075 Sum_probs=275.2
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchH-HHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc------c
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIW-NTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL------T 90 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~ 90 (502)
+...|-..| .......+|+..++.+.+ ||.-.. -.+...+.+.+++.+|++.|+-.+.. .|+.. .
T Consensus 203 vl~nlaqqy-~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~riki 278 (840)
T KOG2003|consen 203 VLFNLAQQY-EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHh-hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhhHHHH
Confidence 333444555 666777888888888775 544332 23455677888888998888877654 33322 2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---C------------CCe
Q 046039 91 YPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---E------------FDV 155 (502)
Q Consensus 91 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~------------~~~ 155 (502)
.+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|.. . |+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 333333467888899999998888775 46666666677777778888888888887754 1 111
Q ss_pred eeHHH-----HHHHHHhcC--CHHHHHHHHHcc----CCCChh-------------hHH--------HHHHHHHhCCChH
Q 046039 156 VAWNS-----MIIGLAKCG--EIDESRRLFDKM----VSRNTV-------------SWN--------SMISGYVRNVKFK 203 (502)
Q Consensus 156 ~~~~~-----l~~~~~~~~--~~~~a~~~~~~~----~~~~~~-------------~~~--------~l~~~~~~~~~~~ 203 (502)
...+. .+.-+-+.+ +.++++-.--++ +.|+-. .+. .-...+.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 11111 111111111 112222111111 112100 000 0112355667777
Q ss_pred HHHHHHHHHHHCCCC------------------------------------CCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 046039 204 EALELFREMQEQNIK------------------------------------PSEFTMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~------------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
.|+++++-..+..-+ -+......-.+.....|++++|...|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 777666665443211 11111111222233457889999999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP---KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
+...-......|+ +.-.+-..|++++|+.+|-++. ..+......+...|-...+..+|++++.+.... ++.|+..
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8765444444444 4455678899999999987754 356667777888888999999999999887765 5567888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-Hh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP-SDPDAIIWGSLLSAC-RK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~ 402 (502)
+.-|...|-+.|+-.+|.+.+-.--+ -++.+..+...|...|....-+++|+.+|++.. -+|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 99999999999999999988766544 567788999999999999999999999998874 369999999887766 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
.|++++|.+.|+......|.+...+..|..++...|..
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 89999999999999999999999999999988877753
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=1.1e-13 Score=127.09 Aligned_cols=426 Identities=11% Similarity=0.053 Sum_probs=253.4
Q ss_pred CCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHh----HhcCCCCCCcccHHHHHHHHHhcCCch
Q 046039 33 PAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDM----LVTSPIQPQRLTYPSLFKAYAQLGLAR 105 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~p~~~~~~~l~~~~~~~~~~~ 105 (502)
+..-++.|.+++++..+ .+...|-+-...--.+|+.+...++..+- ... |+..+...|..=...|-..|..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChh
Confidence 33455777777777665 45566666655556677777776666543 233 66666666666666666666666
Q ss_pred hHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHh--------------
Q 046039 106 DGAQLHGRVVKQGLEFD--QFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAK-------------- 167 (502)
Q Consensus 106 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~-------------- 167 (502)
.+..+....+..|+.-. ..+|+.-...|.+.+.++-|..+|....+ +.+...|......--.
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666666666554321 23555555566666666666665555443 2233344444433334
Q ss_pred --------------------cCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 168 --------------------CGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 168 --------------------~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
.|+...|..++....+ .+...|-.-+..-..+.+++.|..+|.+.... .|+...|
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~ 654 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW 654 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh
Confidence 4555555555444422 12334444445555555555555555555442 3444444
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcC
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNG 301 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 301 (502)
.--+...--.+..++|.+++++.++.- +.-...|-.+.+.+-+.++.+.|...|..-.+. .+..|-.+...--+.|
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 444444444455555555555555542 223444555555555555555555555544332 2335555555555556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLI 381 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (502)
..-.|..++++.+-.+++ +...|...++.-.+.|+.+.|..+..+..+ .++.+...|..-|....+.++-..+...+
T Consensus 734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHH
Confidence 666666666665555433 455555566666666666666666665555 44555555555555555555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCce
Q 046039 382 RSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGC 461 (502)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 461 (502)
++.. .|+.....+...+....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.++++..... +|..|.
T Consensus 811 kkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~ 886 (913)
T KOG0495|consen 811 KKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGE 886 (913)
T ss_pred Hhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCc
Confidence 5443 455666677888888999999999999999999999999999999999999999999999888755 456777
Q ss_pred eEEEECCE
Q 046039 462 SLIEVDGE 469 (502)
Q Consensus 462 ~~~~~~~~ 469 (502)
.|+-+...
T Consensus 887 ~W~avSK~ 894 (913)
T KOG0495|consen 887 LWQAVSKD 894 (913)
T ss_pred HHHHHhhh
Confidence 77655433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=5e-15 Score=140.84 Aligned_cols=312 Identities=15% Similarity=0.160 Sum_probs=178.3
Q ss_pred CChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHcc---CCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 046039 137 GFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKM---VSRNTVSWNSMISGYVRNVKFKEALELFRE 211 (502)
Q Consensus 137 g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (502)
|++++|.+++.++.. +.....|.+|...|-+.|+.+++...+-.. ...|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444444332 223334444444444444444444333222 222334444444444444555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCChHHHHHHHhcCCCC--
Q 046039 212 MQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVV----TAIIDMYCKCGCPERALQVFNTVPKK-- 285 (502)
Q Consensus 212 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~-- 285 (502)
.++.. +++...+---...|-+.|+...|..-|.++.....+.+..-+ ...++.+...++.+.|.+.++.....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44443 333333333344444445555555444444444322121111 11233333444444454444443321
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHHhcC
Q 046039 286 ---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSS---------------------------NLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 286 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~p~~~~~~~l~~~~~~~ 335 (502)
+...++.++..+.+...++.|......+... +..++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 1224455555555555555555544444431 122233331 122233344
Q ss_pred CCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDP---DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
+..+....+....... . +.-+...|..+..+|...|++.+|+.+|..+...| +...|..++.+|...|.++.|+
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444444444443 4 33357788999999999999999999999998753 5668999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+.|++++...|++..+...|+.++.+.|+.++|.+.+..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999998887
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=7.1e-18 Score=151.18 Aligned_cols=258 Identities=16% Similarity=0.125 Sum_probs=114.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
.+...+.+.|++++|+++++.......+| |...+..+...+...++++.|...++++...+. .++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45677788899999999986654443233 444444455566678889999999999887763 366677777777 688
Q ss_pred CChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 270 GCPERALQVFNTVPK--KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN-LKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 270 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
+++++|..++...-+ +++..+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876643 345577778888899999999999999987643 34577788888899999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
+..+. .|.+......++..+...|+.+++.++++..... .++..|..++.+|...|++++|+..|+++.+.+|+++
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99874 2345778888999999999999988888766532 4556788999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.....++.++...|+.++|..+.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999877653
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.3e-14 Score=128.51 Aligned_cols=262 Identities=13% Similarity=0.054 Sum_probs=218.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44455555667788999999999999998875 7777788888888999999888888888888774 567888999999
Q ss_pred HHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 046039 265 MYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 341 (502)
.|...|+..+|+++|.+...-|. ..|-.+...|+-.|..++|+..+...-+. ++-...-+..+.--|.+.++...|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999998877654 48999999999999999999999887764 111222233344457888999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 342 KDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DP-DAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.++|.+... -.|.|+...+.+.-.....+.+.+|..+|+.... ++ -..+++.|+.+|.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999885 3455677888888888889999999999987652 12 345788999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+++++.+.|.++.++..++-+|...|+++.|.+.|.+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.3e-13 Score=116.74 Aligned_cols=398 Identities=13% Similarity=0.138 Sum_probs=268.7
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhh-hCCCCChh-------------------------HHHHHhccCCCCCcchH
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFC-TSPAGDIN-------------------------YAYLVFTQIKKPNLFIW 55 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~-~~~~~~~~-------------------------~A~~~~~~~~~~~~~~~ 55 (502)
+.+.-+++.|.+.|++.++.+-..|+... |....++. -|.-+|+..+ ....+|
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT~et~ 210 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KTDETV 210 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CCchhH
Confidence 34566889999999999888877776632 12222211 2223333332 466789
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046039 56 NTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN 135 (502)
Q Consensus 56 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (502)
..+|.++|+--..++|.++|++.... ..+.+..+||.+|.+-.-. ...+++.+|.+....||..|+|.++++..+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 99999999999999999999999888 7889999999999876533 238899999999999999999999999999
Q ss_pred CCChhHHHHH----HhhcCC---CCCeeeHHHHHHHHHhcCCHHH-HHHHHHccC--------C---C-ChhhHHHHHHH
Q 046039 136 CGFLSEARLM----FDEVDT---EFDVVAWNSMIIGLAKCGEIDE-SRRLFDKMV--------S---R-NTVSWNSMISG 195 (502)
Q Consensus 136 ~g~~~~a~~~----~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~--------~---~-~~~~~~~l~~~ 195 (502)
.|+++.|... +.+|.. +|+..+|..+|..+++.++..+ +..++.++. + | +...|...+..
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 9998876554 444433 7899999999998888887754 444444431 1 1 34456677778
Q ss_pred HHhCCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 196 YVRNVKFKEALELFREMQEQN----IKPS---EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
|.+..+.+-|..+-.-+.... +.|+ ..-|..+..+.+.....+.....|+.++-.-+-|+..+...++++..-
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 888888887777665543211 3333 223556666777778888888888888877777888888888888888
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCCHHHH-HHH
Q 046039 269 CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY---ISFIAVLTACNHSGKVNQA-KDY 344 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a-~~~ 344 (502)
.|.++-..+++..+..-| ..-+-+-.++++..|....+.|+. .-+.....-|.. ++.++ ...
T Consensus 446 ~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~ 511 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQ 511 (625)
T ss_pred cCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 888888888877765322 111222333444555544334432 233333332221 22222 222
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-------PDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
-.++.+ ........+..+-.+.+.|+.++|.++|..+..+ |......-++..-.+.+.+..|..+++-+.
T Consensus 512 ~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 512 PIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233333 3445556677888889999999999998877432 333444456677778889999999999997
Q ss_pred hcCCC
Q 046039 418 ELDKN 422 (502)
Q Consensus 418 ~~~p~ 422 (502)
+.+-+
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 75543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.2e-14 Score=127.68 Aligned_cols=394 Identities=13% Similarity=0.086 Sum_probs=277.8
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHH-HHHHHHHhcCCchhHHHHHHHHHHhCCCCch----hHHHHHHHH
Q 046039 58 IIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYP-SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQ----FIHNTIIYM 132 (502)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 132 (502)
|..-|..+....+|+..|+-+.+. ..-||..... .+...+.+.+++..|+++|+..+..-+..+. .+.+.+.-.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344555667788999999999887 6777766443 3445677888999999999988876443333 345566667
Q ss_pred HHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC----------------CChhhHHHHH--
Q 046039 133 YANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS----------------RNTVSWNSMI-- 193 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~l~-- 193 (502)
+.+.|+++.|...|+.... .|+..+-..|+-++..-|+-++..+.|.+++. |+....+.-+
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 8899999999999998654 68888777777778888999999999988843 1111222111
Q ss_pred ---HHHHhCC--ChHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHhccCchHHHHHHHHHH
Q 046039 194 ---SGYVRNV--KFKEALELFREMQEQNIKPSEFT-------------M--------VSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 194 ---~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~-------------~--------~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
.-+-+.+ +-++++-.-.++..--+.|+-.. + ..-...+.+.|+++.|.++++-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 12222222222222222232110 0 01123467889999999999888
Q ss_pred HHcCCCCchhHHHHHHHHH------------------------------------HhcCChHHHHHHHhcCCCCCcchHH
Q 046039 248 VTNCFELNTIVVTAIIDMY------------------------------------CKCGCPERALQVFNTVPKKGLSCWN 291 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~ 291 (502)
.+..-..-...-+.|-..+ ...|++++|.+.+++....+..+-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 7654332222222221111 1357889999999998888766544
Q ss_pred HH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 292 SM---VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 292 ~l---~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
+| .-.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.++.....|...|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 44 34567889999999999887653 334677888888999999999999999988765 6677788999999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 046039 369 GRAGLLEEAEKLIRSM-PSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
-+.|+-..|.+.+-.- .--| +..+..-|..-|....-+++++..|+++--+.|+.......++.|+.+.|++++|..+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999875332 2223 6667777888888888899999999999989999888888889999999999999999
Q ss_pred HHHhhhcCC
Q 046039 447 RLLMKEVKI 455 (502)
Q Consensus 447 ~~~~~~~~~ 455 (502)
++...++-+
T Consensus 683 yk~~hrkfp 691 (840)
T KOG2003|consen 683 YKDIHRKFP 691 (840)
T ss_pred HHHHHHhCc
Confidence 999876644
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.7e-13 Score=121.03 Aligned_cols=331 Identities=15% Similarity=0.066 Sum_probs=246.9
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC-hhhHHHHHHHH
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN-TVSWNSMISGY 196 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~ 196 (502)
+...|...+-.....+.+.|..+.|...|..... .-+..|.+.+...--..+.+.+..+...+...+ ...=-.+..++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3444555555556667778888888888877662 223444444443333344444433333333221 11112344666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCChHH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE--LNTIVVTAIIDMYCKCGCPER 274 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 274 (502)
....+.++++.-.+.....|++.+...-+....+.....|+++|+.+|+++.+..+- -|..+|+.++-.-....+..-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 677788899999999999998777777777777778889999999999999988421 256677766643322222222
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC
Q 046039 275 ALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKI 354 (502)
Q Consensus 275 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (502)
--...-.+.+--+.|...+.+-|.-.++.++|+..|++..+.+.. ....|+.+.+-|....+...|++-++.+++ -.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 122222334445667888888999999999999999999986533 456788888999999999999999999986 45
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 355 KPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+.|-..|..|.++|.-.+...=|.-.|++... +| |...|.+|+.+|.+.++.++|+++|++++.....+...+..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 66788999999999999999999999999865 45 78899999999999999999999999999988888899999999
Q ss_pred HHHhcCCchHHHHHHHHhhh
Q 046039 433 LYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~ 452 (502)
+|.+.++.++|..++++-.+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999998887765
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=4.8e-13 Score=118.47 Aligned_cols=399 Identities=12% Similarity=0.105 Sum_probs=284.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
.|-....--..++++..|.++|+..+.. -..+...|..-+.+-.+...+..|..++++.+..= +.-...|...+.+=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHH
Confidence 3433334445567788899999998864 34566667777777788889999999999998863 33334555556666
Q ss_pred HhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHcc--CCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKM--VSRNTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
-..|++..|.++|++-.. +|+...|.+.++.-.+-+.++.|..++++. ..|++.+|-.....-.+.|+...+..+|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 678999999999988655 899999999999999999999999999986 56889999888888889999999999998
Q ss_pred HHHHC-C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCChHHHHHHH-------
Q 046039 211 EMQEQ-N-IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVTAIIDMYCKCGCPERALQVF------- 279 (502)
Q Consensus 211 ~m~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~------- 279 (502)
...+. | -..+...+.+...--.....++.|..+|+..++.- +.+ ...|..+...--+-|+........
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 87664 1 01122233333333345667888888888888763 323 455665555555566655444432
Q ss_pred -hcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hcCCCHHHHHHHH
Q 046039 280 -NTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI-------SFIAVLTAC---NHSGKVNQAKDYF 345 (502)
Q Consensus 280 -~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~ 345 (502)
+...+.+ -.+|.-.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 347777777777889999999999998875 444221 122222222 2356888888888
Q ss_pred HHhhhhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 346 TLMTETYKIKPSIKHYSCMVDAL----GRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
+...+ -+|....+|.-+-.+| .++.++..|.+++..+... |...+|...|..-.+.++++....++++.++..
T Consensus 390 q~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 390 QACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88876 4455555655444443 4678888888888776654 888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCC
Q 046039 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEP 459 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 459 (502)
|.+..+|...+..-...|+++.|..+|.-+.+.+.-..|
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 888888888888878888888888888887765543333
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=4.3e-15 Score=136.98 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=165.1
Q ss_pred CHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCchHHHHH-H
Q 046039 170 EIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQN--IKPSEFTMVSLLNACAKLGAIRQGEW-I 243 (502)
Q Consensus 170 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~-~ 243 (502)
+..+|+..|..++. .+..+...+..+|...+++++|.++|+.+.+.. ...+..+|...+..+-+ +-+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 44566666666432 123344556666777777777777777665542 11244556655554422 11222 2
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046039 244 HNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP 320 (502)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 320 (502)
-+.+.+.. +..+.+|.++..+|.-.++.+.|++.|++..+.|+ .+|+.+..-+.....+|.|...|+..+....+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 22333332 44567777777777777777777777777666544 36666666677777777777777766653211
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~ 398 (502)
+-..|..+...|.+.++++.|+-.|+.+.. -.+.+......+...+.+.|+.++|+++++++.. + .++..-...+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 234555666667777777777777777663 2223445555566666777777777777776642 2 24444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+...+++++|+..++++.++-|++..++..++.+|.+.|+.+.|+.-|.-+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 66667777777777777777777777777777777777777777766554443
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.2e-12 Score=116.04 Aligned_cols=418 Identities=10% Similarity=0.057 Sum_probs=299.1
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcc-hHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLF-IWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
++|+.||+..+... ..+...+.....+= .+...++.|..+|++... |.+. .|...+-.--.-|+...|.++|+..
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56778888877765 55666777777777 788888899999888765 4332 4444444445568888999999888
Q ss_pred HhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC-----C
Q 046039 79 LVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE-----F 153 (502)
Q Consensus 79 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 153 (502)
. ...|+...|.+.|..-.+.+.++.|..+++..+- +.|++.+|......=.+.|.+..|..+|+..... .
T Consensus 168 ~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 168 M---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred H---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8 4588988999999888888899999999988876 4688888888888888889988888888776531 2
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C---ChhhHHHHHHHHHhCCChHHHHHH--------HHHHHHCCCCCC
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R---NTVSWNSMISGYVRNVKFKEALEL--------FREMQEQNIKPS 220 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~~~ 220 (502)
+...+.+....-.++..++.|.-+|+-.+. | ....|..+...--+-|+.....+. |+.+++.+ +-|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCC
Confidence 233455555555567777777777765533 1 133455554444455654443332 44455554 667
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh-HHHHHHHH--------HHhcCChHHHHHHHhcCCCC---Ccc
Q 046039 221 EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTI-VVTAIIDM--------YCKCGCPERALQVFNTVPKK---GLS 288 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~---~~~ 288 (502)
-.++-..+..-...|+.+...++|+.++..-.+.... .+...|-. -....+.+.+.++|+...+. ...
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 7788888888888899999999999998864332211 11111111 12467888888888765542 222
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 046039 289 ----CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364 (502)
Q Consensus 289 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 364 (502)
.|.....-..++.+...|.+++...+. .-|-..+|...|..-.+.++++.+..+++.... --|.+..+|...
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKY 477 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHH
Confidence 444455556678899999999988775 578889999999988899999999999999985 224456777777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSDPD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
...=...|+.+.|..+|+-+.++|. ...|...|..-...|.+++|..+++++++..+-.. +|...+.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 7777788999999999999988763 34677888888889999999999999998766533 5555553
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.1e-14 Score=126.36 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=176.8
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHH
Q 046039 231 CAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
+.-.|+.-.+..-|+..+..... +...|-.+..+|....+.++-...|.+..+. ++.+|..-...+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34567888999999999887633 3344777788899999999999999987764 5668999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS- 386 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 386 (502)
.-|++.+.... -+...|..+..+..+.+.+++++..|++..+ .+|..+.+|+.....+...+++++|.+.|+....
T Consensus 415 aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998642 2456677777777788999999999999988 6677788999999999999999999999988754
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 387 DPD---------AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 387 ~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+|. +.+-..++..- -.+++..|..+++++++++|.....+..|+..-.+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 232 22222333332 34899999999999999999999999999999999999999999998764
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=8.5e-14 Score=130.56 Aligned_cols=275 Identities=11% Similarity=0.081 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHccCCC--Chhh-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCchHHHHH
Q 046039 168 CGEIDESRRLFDKMVSR--NTVS-WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMV--SLLNACAKLGAIRQGEW 242 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 242 (502)
.|+++.|++.+....+. ++.. |.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555443221 1222 222233335566666666666666543 33332221 22344555666666666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-----------hHHHHHHHHHhcCChHHHHHHHH
Q 046039 243 IHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS-----------CWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 334555555666666666666666665555543211 22222333333344455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-C
Q 046039 312 GLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-D 389 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~ 389 (502)
.+.+. .+.++.....+...+...|+.++|..+++...+. +|+.... ++.+....++.+++.+.++...++ | |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 54332 2346667777778888888888888888777653 3444222 233334558888888887776643 5 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+..+..++..|.+.+++++|.+.|+++++..|++.. +..++.++.+.|+.++|..++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556777888888888888888888888888887654 45777788888888888888776643
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.8e-14 Score=132.92 Aligned_cols=250 Identities=15% Similarity=0.110 Sum_probs=171.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF--ELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
+..+|+..|....+. +..+......+..+|...+++++++.+|+.+.+... .-+..+|.+.+-.+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467788888774443 344556667777788888888888888888776541 23566666666544332222222222
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-
Q 046039 279 FNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP- 356 (502)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 356 (502)
+-......+.+|.++...|.-+++.+.|++.|++.++. .| ...+|+.+.+-+.....++.|...|+.... +.|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence 22333445678888888888888888888888888774 34 556777777777777788888888877663 222
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+-..|..+...|.+.++++.|+-.|+++.. .| +......++..+.+.|+.++|+++++++..++|.++-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 234455566777888888888888877764 34 4556667777788888888888888888888888888878888888
Q ss_pred HhcCCchHHHHHHHHhhhcCCc
Q 046039 435 AASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
...+++++|+..++++.+--++
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcc
Confidence 8888888888888887755443
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1e-12 Score=125.43 Aligned_cols=417 Identities=14% Similarity=0.121 Sum_probs=297.8
Q ss_pred CCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 046039 34 AGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQL 110 (502)
Q Consensus 34 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 110 (502)
.|++++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-. -.+-|...|..+.....+.|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3999999999999876 5667899999999999999999888765543 3455667899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CC--Cee----eHHHHHHHHHhcCCHHHHHHHHHccCC
Q 046039 111 HGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EF--DVV----AWNSMIIGLAKCGEIDESRRLFDKMVS 183 (502)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 183 (502)
|.++++.. +++....-.-+..|-+.|+...|...|.++.. .| |.. .-..+++.+...++-+.|++.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999986 45666666778899999999999999988764 22 111 122345667778888999999988755
Q ss_pred -----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---------------------------CCHHHHHHHHHHH
Q 046039 184 -----RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK---------------------------PSEFTMVSLLNAC 231 (502)
Q Consensus 184 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~ll~~~ 231 (502)
-+...++.++..+.+...++.+......+...... ++... ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 24557899999999999999999999888762222 22222 1233345
Q ss_pred hccCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHH
Q 046039 232 AKLGAIRQGEWIHNFLVTNC--FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK----GLSCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 305 (502)
.+....+....+...+.... +.-+...|..+..+|.+.|++.+|+.+|..+... +...|-.++.+|...|.++.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 56666666666777777766 3445778899999999999999999999988764 34589999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh-------hcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE-------TYKIKPSIKHYSCMVDALGRAGLLEEAE 378 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (502)
|.+.|+......+ .+...-..|...+...|+.++|.+.+..+.. ..+..|...........+.+.|+.++=.
T Consensus 468 A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999998532 2344555667778899999999999998531 1144556555566677788899988765
Q ss_pred HHHHhCCCC--------C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HhcCCCCc-
Q 046039 379 KLIRSMPSD--------P-----------------DAIIWGSLLSACRKHGNIEMAKQAAKQI--------IELDKNES- 424 (502)
Q Consensus 379 ~~~~~~~~~--------~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~p~~~- 424 (502)
.+..+|... | .......++.+-.+.++..........- ..+.-++.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 544433210 1 1112222333333333332222222111 11122222
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
..+..++.++.+.+++++|+.+...+.+...
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~ 657 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYI 657 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 3556677788899999999998888766543
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=5e-16 Score=139.24 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=117.0
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcC
Q 046039 226 SLLNACAKLGAIRQGEWIHNFLVTNC-FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNG 301 (502)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (502)
.+...+...|++++|.+++....... .+.++..+..+.......++++.|...++++...+ +..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55788889999999999997665554 35566777777788888999999999999998754 3366677777 7899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLI 381 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (502)
++++|.+++....+. .+++..+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356677788888899999999999999998765445677888889999999999999999999
Q ss_pred HhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCC
Q 046039 382 RSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEP 459 (502)
Q Consensus 382 ~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 459 (502)
+++.. .| +......++..+...|+.+++.++++...+..|+++.++..++.+|...|+.++|+.++++..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~-------- 241 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL-------- 241 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH--------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc--------
Confidence 99875 46 477888999999999999999999999999889999999999999999999999999999986
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 460 GCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
..+|+++.+...++.+....|+.+
T Consensus 242 ------------------~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 242 ------------------KLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp ------------------HHSTT-HHHHHHHHHHHT------
T ss_pred ------------------cccccccccccccccccccccccc
Confidence 346788888889998888887764
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=4.9e-13 Score=125.47 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=177.7
Q ss_pred cCCchhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHH--HHHHHHHhcCCHHHHHH
Q 046039 101 LGLARDGAQLHGRVVKQGLEFDQFIH-NTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWN--SMIIGLAKCGEIDESRR 176 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~--~l~~~~~~~~~~~~a~~ 176 (502)
.|+++.|.+.+....+.. +++..+ ..........|+++.|...+.++.. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777655432 123333 3334444778888888888887764 23332222 12344555555555555
Q ss_pred HHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 177 LFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 177 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
.++++.+ .++.....+...|.+.|++++|.+++..+.+.+..+ ......+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH-------------------------
Confidence 5555422 234455555666666666666666666666554322 11111000
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 254 LNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLT 330 (502)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 330 (502)
..++..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. .|++... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 01112222222233344555555555543 35556777778888888888888888887774 4444322 233
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 409 (502)
+....++.+++.+..+...+ ..+-|+..+..+...+.+.+++++|.+.|+.... .|+...+..+...+.+.|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33455889999999998887 4455667778889999999999999999998876 48988888999999999999999
Q ss_pred HHHHHHHHhc
Q 046039 410 KQAAKQIIEL 419 (502)
Q Consensus 410 ~~~~~~~~~~ 419 (502)
.+++++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 9999998774
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.8e-12 Score=122.42 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=65.1
Q ss_pred hCCChhHHHHHHhhcCC-CCCeee-HHHHHHHHHhcCCHHHHHHHHHccCC--CCh--hhHHHHHHHHHhCCChHHHHHH
Q 046039 135 NCGFLSEARLMFDEVDT-EFDVVA-WNSMIIGLAKCGEIDESRRLFDKMVS--RNT--VSWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~ 208 (502)
..|+++.|.+.+.+... .|++.. +-....+..+.|+.+.|.+.+.+..+ |+. .........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655443 232222 22223445555666666666655422 222 1222345666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 046039 209 FREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF 252 (502)
Q Consensus 209 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 252 (502)
++.+.+.. |-+......+...+...|+++.+.+.+..+.+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 77776664 44555666666666777777777777777666653
No 45
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.7e-12 Score=113.70 Aligned_cols=350 Identities=12% Similarity=0.097 Sum_probs=245.8
Q ss_pred CCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccH
Q 046039 16 LAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTY 91 (502)
Q Consensus 16 ~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 91 (502)
.+-++.++..+++-. +|-...+.|..++++... -+..+||.+|.+-.-. ...+++.+|... .++||..|+
T Consensus 203 ~PKT~et~s~mI~Gl-~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq-km~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGL-CKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ-KMTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHH-HHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh-hcCCchHhH
Confidence 466789999999999 899999999999999865 5667888887664333 337889999988 899999999
Q ss_pred HHHHHHHHhcCCchh----HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH-HHHHHhhcCC-----------CCCe
Q 046039 92 PSLFKAYAQLGLARD----GAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE-ARLMFDEVDT-----------EFDV 155 (502)
Q Consensus 92 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~-----------~~~~ 155 (502)
|.++.+.++.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. +.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56788899999999999999999999999888755 4444433321 2344
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHccCC--------CC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 156 VAWNSMIIGLAKCGEIDESRRLFDKMVS--------RN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
..|..-+..|.+..+.+.|.++..-+.. ++ ..-|..+....++....+.-..+|+.|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 4567778888899999988887765522 22 234667778888888999999999999888788999999
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc-CCh
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN-GYE 303 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 303 (502)
..++++....|.++-.-+++..+...|..........+...+++..- .++......+-.+.++. -++
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887755444444434433333220 11111111111111110 011
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH---HHHHHHHhcCCHHHHHH
Q 046039 304 -NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS---CMVDALGRAGLLEEAEK 379 (502)
Q Consensus 304 -~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~ 379 (502)
+.....-.+|++... .....+.++-.+.+.|..++|.+++..+.+++.-.|.....+ .+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 111222334444433 445556666667788888888888888755433333333444 55566667788888888
Q ss_pred HHHhCC
Q 046039 380 LIRSMP 385 (502)
Q Consensus 380 ~~~~~~ 385 (502)
.++-+.
T Consensus 583 ~lQ~a~ 588 (625)
T KOG4422|consen 583 VLQLAS 588 (625)
T ss_pred HHHHHH
Confidence 887774
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=5.9e-13 Score=112.33 Aligned_cols=310 Identities=13% Similarity=0.053 Sum_probs=162.2
Q ss_pred CCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC-CChh------hHHHHHHHHHhCCChHHHH
Q 046039 136 CGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS-RNTV------SWNSMISGYVRNVKFKEAL 206 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~ 206 (502)
.++.++|.+.|-+|.. +.+..+-.+|.+.|-+.|..+.|+++-..+.+ ||.. +...|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4556666666666653 12223334555666666666666666666543 2211 2233445555666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 046039 207 ELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG 286 (502)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (502)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+...- +..
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQ---------------------- 181 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHH----------------------
Confidence 6666665543 33344455555566666666666666665555443322110 011
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.|..+...+....+.+.|..++.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~ 257 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYE 257 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 2223333333444555555555555554322 2222223344455556666666666655543 22222344455555
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCCchHH
Q 046039 367 ALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA--SYQFEEA 443 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A 443 (502)
+|...|+.++....+..+... +....-..+...-....-.+.|...+.+-+...|+-..++..+.--... .|++.+-
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKES 337 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhh
Confidence 666666666666655554432 3333333344444444445556666666666666544444444322222 2446666
Q ss_pred HHHHHHhhhcCCccCCceeEEEECCEEEEEEe
Q 046039 444 MEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA 475 (502)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (502)
+..++.|....++..|.|..-..+-..+.+.|
T Consensus 338 L~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 338 LDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred HHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 77888888888888888887777777776664
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-12 Score=112.98 Aligned_cols=356 Identities=13% Similarity=0.078 Sum_probs=251.1
Q ss_pred CcccHHHHHH--HHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHH
Q 046039 87 QRLTYPSLFK--AYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIG 164 (502)
Q Consensus 87 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~ 164 (502)
+...|..-+. .+.+.|....|...+...+.. .|..-..|..|.... .+.+.+..+...+......-.--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3334444333 345677888888888777664 344555555554443 3344443333222211111111133456
Q ss_pred HHhcCCHHHHHHHHHccCC---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCchH
Q 046039 165 LAKCGEIDESRRLFDKMVS---R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNI--KPSEFTMVSLLNACAKLGAIR 238 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~ 238 (502)
+....+.+++..-.+.... | +...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-.....
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk-- 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK-- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH--
Confidence 6666677777666655533 2 233333444555678899999999999998741 1256677776644322111
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 239 QGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
..++.+-.-.--+.-+.|...+.+-|.-.++.++|...|+...+.|+. +|+.+..-|....+...|++.+++.++
T Consensus 315 --Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 --LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred --HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222222211112445678888899999999999999999998886654 899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 046039 316 SNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIW 393 (502)
Q Consensus 316 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 393 (502)
-++ -|...|..+.++|.-.+.+.-|+-+|++... --|.|...|.+|..+|.+.++.++|+.-|.....- .+...+
T Consensus 393 i~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 INP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred cCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 643 3788999999999999999999999999875 33446899999999999999999999999988653 455789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIE-------LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..|+..|-+.++.++|.+.|++.++ .+|....+...|+.-+.+.+++++|..+.......
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999999887 34545556666888899999999999877666543
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=3.2e-11 Score=111.26 Aligned_cols=374 Identities=12% Similarity=0.055 Sum_probs=208.4
Q ss_pred CChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 046039 66 STPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLM 145 (502)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 145 (502)
.+.+.|.-++....+- ++.+. -|..++++..-++.|..+++...+. ++.+..+|.+-...=-..|+.+...++
T Consensus 390 E~~~darilL~rAvec--cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC--CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHHh--ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444466666555542 22222 2333444455566666666666554 455666666555555566666666555
Q ss_pred HhhcCC-------CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC------CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 146 FDEVDT-------EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS------RNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 146 ~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
+.+... ..+...|..=...|-..|..-.+..+....+. .--.+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 544321 12222333334444444444444444444321 12335666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ccch
Q 046039 213 QEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSC 289 (502)
Q Consensus 213 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 289 (502)
++. .+-+...|......--..|..+....+++++.... +.....+-.....+...|+...|..++..+-+. +...
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 554 23344455555544455566666666666666653 233444444455555566666666666654432 2335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
|.+-+.......+++.|..+|.+.... .|+...|.--+..-...++.++|.+++++..+ .++.-...|..+.+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHH
Confidence 666666666666666666666666553 34555555444444455666666666666665 33334555666666666
Q ss_pred hcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
+.++++.|...|..-... | .+..|..|...--+.|+..+|..+++++.-.+|.++.+|...+.+-.+.|+.++|..+.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555433 3 34456666666666666666666666666666666666666666666666666666655
Q ss_pred HHhhh
Q 046039 448 LLMKE 452 (502)
Q Consensus 448 ~~~~~ 452 (502)
.++.+
T Consensus 777 akALQ 781 (913)
T KOG0495|consen 777 AKALQ 781 (913)
T ss_pred HHHHH
Confidence 44443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.7e-12 Score=122.52 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=180.7
Q ss_pred HhcCCchhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCee--eHHHHHHHHHhcCCHHHH
Q 046039 99 AQLGLARDGAQLHGRVVKQGLEFDQ-FIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVV--AWNSMIIGLAKCGEIDES 174 (502)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a 174 (502)
...|+++.|.+.+....+.. |++ ..+.....++...|+.+.|.+.+.+... .|+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35577777777776665542 332 2333445566667777777777766543 23332 233346666777777777
Q ss_pred HHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH---hccCchHHHHHHHHHH
Q 046039 175 RRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSL-LNAC---AKLGAIRQGEWIHNFL 247 (502)
Q Consensus 175 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~---~~~~~~~~a~~~~~~~ 247 (502)
...++.+.+ | ++.++..+...+...|++++|.+.+..+.+.++. +...+..+ ..++ ...+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~--------- 242 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD--------- 242 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 777777743 3 5667888999999999999999999999998743 33333211 1111 1111111
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
...+...+.+...++ .++..+..++..+...|+.++|.+.+++..+.........
T Consensus 243 ----------------------~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 243 ----------------------EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred ----------------------cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 112233333333332 2455666666677777777777777777776432221111
Q ss_pred H-HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--CC-CCCCHHHHHHHHHHH
Q 046039 325 F-IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRS--MP-SDPDAIIWGSLLSAC 400 (502)
Q Consensus 325 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~ 400 (502)
+ ..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. .. ..|+...+..++..+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 1 1111222345778888888888876432222225667889999999999999999993 33 368888888999999
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 046039 401 RKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~ 418 (502)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999876
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=8.2e-12 Score=105.56 Aligned_cols=282 Identities=10% Similarity=0.088 Sum_probs=181.1
Q ss_pred cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeee------HHHHHHHHHhcCCHHHH
Q 046039 101 LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA------WNSMIIGLAKCGEIDES 174 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a 174 (502)
+++.++|.++|-+|.+.. +-+..+..+|.+.|.+.|..+.|+++...+..+||... ...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888887753 33556667888888888888888888888776666542 33455668888999999
Q ss_pred HHHHHccCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCchHHHHHHHHHH
Q 046039 175 RRLFDKMVSRN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEF----TMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 175 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
+.+|..+.+.. ......|+..|-...+|++|++.-+++.+.+-.+... .|.-+...+....+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99998887633 4467788999999999999999999998876444321 2222333333334444444444444
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIA 327 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 327 (502)
.+.+ +..+. +--.+...+...|+++.|++.++...+.+..--..+...
T Consensus 207 lqa~-~~cvR-------------------------------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQAD-KKCVR-------------------------------ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhC-cccee-------------------------------hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4432 11122 223344555666777777777777766654444556677
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHh---c
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK-LIRSMPSDPDAIIWGSLLSACRK---H 403 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~---~ 403 (502)
|..+|...|+.++...++..+.+. .+....-..+...-....-.+.|.. +.+.+..+|+...+..++..-.. -
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 777888888888888888877754 2333333334444333444444444 44566667888888888776543 2
Q ss_pred CCHHHHHHHHHHHHh
Q 046039 404 GNIEMAKQAAKQIIE 418 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~ 418 (502)
|...+....+..++.
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 345555556666654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.3e-11 Score=107.58 Aligned_cols=251 Identities=14% Similarity=0.080 Sum_probs=117.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.-+.|+.+.+-.++.+.-+.--.++...+....+.....|+.+.|..-..++.+.+ +.++.+.....++|.+.|++
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccH
Confidence 34444444455555544444443213333333344444444444454444444444443 22344444444555555555
Q ss_pred HHHHHHHhcCCCCCcc-----------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 046039 273 ERALQVFNTVPKKGLS-----------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 341 (502)
.....++.++.+.+.. +|..++.-....+..+.-...++..-.. .+.++..-..++.-+...|+.++|
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHH
Confidence 5555555444443211 3444444444444444444444444332 233444444555555556666666
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 342 KDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
.++.++..++ +..|+.. ..-.+.+-++...-++..++.... | ++..+.+|+..|.+.+.|.+|...|+.+++.
T Consensus 283 ~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 283 QEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 6666555554 3333311 111223344444333333332211 1 2345556666666666666666666666555
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 420 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.|+ ...+..++.+|.+.|+..+|..++++..
T Consensus 358 ~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 358 RPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 554 3345566666666666666666555544
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=5.1e-11 Score=103.94 Aligned_cols=276 Identities=14% Similarity=0.066 Sum_probs=191.7
Q ss_pred CCChhHHHHHHhhcCCCC--CeeeHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhhHHHHHHHHHhCCChHHHHHHH
Q 046039 136 CGFLSEARLMFDEVDTEF--DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR----NTVSWNSMISGYVRNVKFKEALELF 209 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (502)
.|+|..|++...+..+.. ....|..-..+..+.|+.+.+-+.+.+.-++ +...+-.........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 456666666665544322 2223333344555566666666666665332 3334455556666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNT-------IVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776665 445556666677777777777777777777776644332 34455555444455555555677766
Q ss_pred CC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChh
Q 046039 283 PK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359 (502)
Q Consensus 283 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (502)
++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ....-.+.+.++...-++..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 64 4677777888888999999999999998888877766 2223346677888888888888777545444 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.+..|...|.+.+.+.+|...|+...+ .|+..+|.-+..++.+.|+..+|.++.++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 778899999999999999999997765 49999999999999999999999999999885
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=8e-12 Score=109.36 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...+++..+. +...+..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 455566666777777777777777665432 234666777778888888888888888877643 3556677778888
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
...|++++|.+.++........+.....+..+..++...|++++|...+++.... | +...+..++..+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998764222334556777888899999999999999887642 3 4667888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..++++++..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999988877543
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.7e-10 Score=108.80 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACR 401 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 401 (502)
.|......+...++.++|...+.+... ..+.....|......+...|..++|.+.|..... +| ++.+..+++..+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345566677788888999888888765 4456677888888889999999999999877654 46 5678899999999
Q ss_pred hcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 402 KHGNIEMAKQ--AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 402 ~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+.|+..-|.. ++..+++++|.++..|..++.++...|+.++|.+.|+...+-.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999888888 9999999999999999999999999999999999999987654
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=1.5e-11 Score=114.94 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=116.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCC---
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQS-----SNL-KPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYK--IKP--- 356 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 356 (502)
+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|...+++++|..+++...+.+. +.+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 444444455555555554444444322 121 2222 3456667778888999999988887665432 222
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC
Q 046039 357 -SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---------PD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE----LDK 421 (502)
Q Consensus 357 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p 421 (502)
-..+++.|...|...|++++|.++++++... +. ...++.|...|.+.+++.+|.+.|.+... ..|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2467889999999999999999999887531 22 34678899999999999999999998875 445
Q ss_pred CCc---chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 422 NES---CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 422 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+++ ..|..|+.+|.+.|++++|.++...+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 554 5788999999999999999999888764
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.8e-11 Score=104.58 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCC-cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQ-RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFD-QFIHNTIIYMYA 134 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 134 (502)
....-+.++|++++|++.|.+... ..|+ +..|.....+|...|+|+.+.+--...++. .|+ +-.+..-.+++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 344556777888888888888774 3577 566777777777888888877777776664 333 345556666777
Q ss_pred hCCChhHHHH
Q 046039 135 NCGFLSEARL 144 (502)
Q Consensus 135 ~~g~~~~a~~ 144 (502)
..|++++|+.
T Consensus 195 ~lg~~~eal~ 204 (606)
T KOG0547|consen 195 QLGKFDEALF 204 (606)
T ss_pred hhccHHHHHH
Confidence 7777776643
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=7.6e-11 Score=112.54 Aligned_cols=249 Identities=13% Similarity=0.124 Sum_probs=180.2
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 6 KIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 6 ~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
.+|..+...|+.|+..+|..++..| +..|+++.|- +|.-|.- -+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarY-c~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARY-CTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHH-cccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4678899999999999999999999 9999999998 8887764 45567889999988888877663
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHH-------hCCCCchh--------------HHHHHHHHHHhCCChh
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK-------QGLEFDQF--------------IHNTIIYMYANCGFLS 140 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~--------------~~~~l~~~~~~~g~~~ 140 (502)
.|.+.+|..|..+|...|+...-..+=+.+.. .|+..... .-...+....-.|-++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 47888999999999999987652222222222 22111111 1122333344556677
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhc-CCHHHHHHHHHccCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046039 141 EARLMFDEVDTEFDVVAWNSMIIGLAKC-GEIDESRRLFDKMVS-RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218 (502)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (502)
.+.+++..++...-......+++-+... ..+++-........+ +++.+|..++.+-..+|+.+.|..++.+|.+.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 7777777665411111111123333333 334555555555555 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 219 PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
.+.+-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 998888877754 78889999999999999999999998877766665443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=2.4e-08 Score=92.68 Aligned_cols=401 Identities=14% Similarity=0.136 Sum_probs=243.4
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh
Q 046039 38 NYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ 117 (502)
Q Consensus 38 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 117 (502)
+.++....+|+ ..|-..+..+..+|+.......|...+..-.+......|...+......+-++.+..++++.++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44555555553 46767777788888888888888888775455556668888888888888888888888888764
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---------CCCee--------------------------------
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---------EFDVV-------------------------------- 156 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~-------------------------------- 156 (502)
++..-+..+..+++.+++++|.+.+..+.. +.+-.
T Consensus 168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 333466677778888888888877766543 11222
Q ss_pred ------eHHHHHHHHHhcCCHHHHHHHHHccCCC--ChhhHHHHHHHHHhCC----------------------ChHHHH
Q 046039 157 ------AWNSMIIGLAKCGEIDESRRLFDKMVSR--NTVSWNSMISGYVRNV----------------------KFKEAL 206 (502)
Q Consensus 157 ------~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~----------------------~~~~a~ 206 (502)
.|.+|.+.|.+.|.+++|.++|++.+.. ++..|+.+.++|+.-. +++-.+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 2445555555555555555555554332 2222333333332111 011112
Q ss_pred HHHHHHHHCC-----------CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhc
Q 046039 207 ELFREMQEQN-----------IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL------NTIVVTAIIDMYCKC 269 (502)
Q Consensus 207 ~~~~~m~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 269 (502)
..|+.+.+.. -+.+...+..-.. ...|+..+....+.++.+.- .| -...+..+...|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhc
Confidence 2222222111 0111111111111 11234445555565555431 22 134567788889999
Q ss_pred CChHHHHHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------CHHHH
Q 046039 270 GCPERALQVFNTVPKKGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-----------------DYISF 325 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~~~ 325 (502)
|+.+.|..+|++..+-+.. +|..-...-.++.+++.|++++++.....-.| +...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999988875433 55556666667888999999888876432111 12234
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHH-HHHHHHHHHH
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--D-PDAI-IWGSLLSACR 401 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~-~~~~l~~~~~ 401 (502)
...+..-...|-++....+++.+..-.-..| .+.-.....+....-++++.++|++-.. + |++. .|+..+.-+.
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 4555555556788888888888876522233 2223333444566778999999998764 2 6554 7777665544
Q ss_pred h---cCCHHHHHHHHHHHHhcCCCCc--chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 402 K---HGNIEMAKQAAKQIIELDKNES--CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 402 ~---~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+ ....+.|..+|+++++.-|+.. ++|...+..-.+-|.-..|.++++++.
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3479999999999999766422 345555555556788888999888864
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=5e-11 Score=116.98 Aligned_cols=260 Identities=13% Similarity=-0.020 Sum_probs=188.6
Q ss_pred ChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCchHHHHHHHHHHHHc
Q 046039 185 NTVSWNSMISGYVR-----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACA---------KLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 185 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 250 (502)
+...|...+.+-.. .+++++|...|++..+.. +.+...+..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555554321 234679999999998874 445556666555443 234588999999999988
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 251 CFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIA 327 (502)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 327 (502)
+ +.+...+..+...+...|++++|...|+++.+.+ ...+..+...+...|++++|+..+++..+.++. +...+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 6 4567888888889999999999999999877654 347888899999999999999999999986543 2223333
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-AIIWGSLLSACRKHG 404 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~ 404 (502)
++..+...|++++|...++++... .+| ++..+..+..++...|+.++|...++++... |+ ...++.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 444566689999999999998763 234 4555677888899999999999999987654 44 334556666777777
Q ss_pred CHHHHHHHHHHHHh---cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 405 NIEMAKQAAKQIIE---LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 405 ~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++|...++++++ ..|.++.. +..+|.-.|+.+.+... +++.+.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 488888888776 33444433 55567778888887776 77776543
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-09 Score=94.99 Aligned_cols=274 Identities=10% Similarity=-0.015 Sum_probs=177.1
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVS---WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLL 228 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 228 (502)
+.|+.....+..++...|+.++|+..|++..--|+.+ .....-.+.+.|+.+....+...+.... .-+...|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4566666777777777777777777777764443332 2233344556777777777766665432 22222333333
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHH
Q 046039 229 NACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 305 (502)
......++++.|..+-++.++.+ +.+...+-.-...+...|+.++|.=.|+.... .+..+|.-|+..|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 34455667777777777776654 23444444445566677777777777776543 245578888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-CCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVL-TACNH-SGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
|.-.-+..... ...+..+++.+. ..|.. ..--++|..+++...+ +.|+ ....+.+...+...|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 77766555543 233555555552 33332 2345677788777653 3454 4455667777888888888888887
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 383 SMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 383 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
.... .||....+.|+..+...+.+++|++.|..++.++|++......|-
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 7654 478888888888888888888888888888888888776555443
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.1e-09 Score=90.36 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=201.9
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHH
Q 046039 182 VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTA 261 (502)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (502)
...|+.....+..++...|+.++|...|++.+..+ +-+........-.+...|+.+....+...+.... ..+...+-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 33578888999999999999999999999987653 2233333333444567888888888887776643 223333333
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKV 338 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 338 (502)
-+......++++.|+.+-++..+.+.. .+-.-..++...|+.++|.-.|+..+... +.+...|..++.+|...|.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 344455678899999999887765544 44444567889999999999999998752 34668999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 339 NQAKDYFTLMTETYKIKPSIKHYSCMV-DALG-RAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
.+|.-.-....+ -++.+..+...+. ..+. ...--++|..++++... +|+ ....+.+...|...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888777766 3445555555442 2222 33346889999988765 475 3466778889999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 415 QIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 415 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.+...|+ ...+..|+.++...+.+++|.+.|....+.+++
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99988887 457899999999999999999999988765543
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.5e-11 Score=104.10 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=191.7
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 046039 223 TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAM 299 (502)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 299 (502)
--..+.++|.+.|.+.+|++.++..++. .|-+.+|-.|.+.|.+..++..|+.+|.+-.+. ++....-+...+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3456788899999999999999888876 456677888889999999999999999887664 33344556777888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
.++.++|.++|+...+.. ..+......+...|.-.++++-|..+++++... |+ .++..|+.+..+|.-.+++|-+..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999998864 336666777777888889999999999999886 54 467788889999999999999999
Q ss_pred HHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 380 LIRSMPS---DPD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 380 ~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
-|++... +|+ ..+|..+.......|++..|.+.|+-++..+|++...++.|+..-.+.|+.++|..++....+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8887654 243 45899999999999999999999999999999999999999999999999999999999988765
Q ss_pred Cc
Q 046039 455 IE 456 (502)
Q Consensus 455 ~~ 456 (502)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
No 63
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.8e-09 Score=89.47 Aligned_cols=392 Identities=11% Similarity=0.009 Sum_probs=221.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHH-HHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHN-TIIYMY 133 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 133 (502)
+++.+..+.+..++..|++++..-.+. -+.+......+..+|-...++..|-..++++-.. .|...-|. .-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 445555556666677777776666554 1224445555666666666677777777666553 23322221 223445
Q ss_pred HhCCChhHHHHHHhhcCCCCCeeeHHHHHHH--HHhcCCHHHHHHHHHccC-CCChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDTEFDVVAWNSMIIG--LAKCGEIDESRRLFDKMV-SRNTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
.+.+.+..|+++...|...++...-..-+.+ ..+.+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5666667777776666643333222222222 234566777777777776 3556666666666677778888877777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC-------------ch---------------hHHHHH
Q 046039 211 EMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL-------------NT---------------IVVTAI 262 (502)
Q Consensus 211 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l 262 (502)
...+-+--.....|+..+ ++.+.|+.+.|.++..++++.|++. |. ..+|.-
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 776644233344555444 4556677777777777777765431 11 123333
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 046039 263 IDMYCKCGCPERALQVFNTVPKK-----GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK 337 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 337 (502)
...+.+.|+++.|.+.+-.|+.+ |+++...+.-. -..+++.+..+-+.-+.+.++ ....||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 33456789999999999998754 55555444322 223555556666666666544 456788888888999888
Q ss_pred HHHHHHHHHHhhhhcCCC-CChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC----HHHHH
Q 046039 338 VNQAKDYFTLMTETYKIK-PSIKHYSCMVDALG-RAGLLEEAEKLIRSMPSDPDAIIWGSLLSAC-RKHGN----IEMAK 410 (502)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~~~----~~~A~ 410 (502)
++.|-.++.+-... .+. .+...|+ |++++. ..-..++|.+-++.+........-...+..- .+..+ ...|+
T Consensus 326 f~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888887654321 111 1233333 344443 3345666666555443211000111111111 11111 22344
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
+-+++.++.- ..+....++.|++..++..+++.|+.-.+..-+.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 4444544432 12567778899999999999999998776654443
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.7e-08 Score=92.68 Aligned_cols=411 Identities=12% Similarity=0.041 Sum_probs=225.7
Q ss_pred HHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHh
Q 046039 24 SRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ 100 (502)
Q Consensus 24 ~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 100 (502)
-+-+..+ ...|++++|.+...++.. .+...+.+=+-++.+.+++++|+.+.+.-. ++..+...+.-=.-+..+
T Consensus 16 ~t~ln~~-~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 16 LTDLNRH-GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHHHHHHHH
Confidence 3345566 677888888888887765 344566777777788888888875543332 111111111112233347
Q ss_pred cCCchhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHH-HHhcCCHHHHHHHH
Q 046039 101 LGLARDGAQLHGRVVKQGLEF-DQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIG-LAKCGEIDESRRLF 178 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~ 178 (502)
.+..++|+..++ |..+ +..+...-...+.+.|++++|..+|+.+.. .+...+...+.+ +...+....+. +.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhhhHH-HH
Confidence 788888888777 2232 334666666777788888888888887752 222222221111 11111111111 22
Q ss_pred HccCCCChhhHHH---HHHHHHhCCChHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHhccCchHHHH
Q 046039 179 DKMVSRNTVSWNS---MISGYVRNVKFKEALELFREMQEQN-------IKPSE-------FTMVSLLNACAKLGAIRQGE 241 (502)
Q Consensus 179 ~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~ll~~~~~~~~~~~a~ 241 (502)
+........+|.. ....+...|++.+|+++++..+..+ -..+. ..-..+.-.+...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222222223322 2334445666666666666552110 00000 01122333444556666666
Q ss_pred HHHHHHHHcCCCCchh----HHHHHHHH---------------------------------------------HHhcCCh
Q 046039 242 WIHNFLVTNCFELNTI----VVTAIIDM---------------------------------------------YCKCGCP 272 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~----~~~~l~~~---------------------------------------------~~~~g~~ 272 (502)
.++..+++... +|.. ..|.|+.. ..-.+..
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 66666655542 2211 11212111 0111222
Q ss_pred HHHHHHHhcCCCCCc-chHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH---
Q 046039 273 ERALQVFNTVPKKGL-SCWNSMVFGLA--MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT--- 346 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--- 346 (502)
+.+.++-.......+ ..+..++.... +......+.+++....+....-........+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 333333333332221 23333433322 223466777777777665333334566666777888999999999998
Q ss_pred -----HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 347 -----LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DP-DAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 347 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.+... +.. +.+...+...+.+.++.+.|..++.+... ++ -..++.-++..-.+.|+-++|...
T Consensus 404 ~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44332 333 44455677778888887777777665532 12 122445555666788999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
++++++.+|++..+...++.+|.+. +.+.|+.+-+.+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999888887 677887765544
No 65
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-09 Score=98.84 Aligned_cols=400 Identities=14% Similarity=0.102 Sum_probs=229.8
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDG 107 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a 107 (502)
...|+++.|+..|-.... +|...|+.-..+|...|++++|++=-.+-.+ +.|+. ..|.....++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHH
Confidence 578999999999998654 7888899999999999999999877666653 56774 4899999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH------HhhcCCCC------CeeeHHHHHHHHHh--------
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLM------FDEVDTEF------DVVAWNSMIIGLAK-------- 167 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~------~~~~~~~~------~~~~~~~l~~~~~~-------- 167 (502)
+..|.+-++.. +.+...++.+..++... .. +.+. +..+...| ....|..++..+-+
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999998874 44667777777776111 00 0111 11111111 01112222111111
Q ss_pred --cCCHHHHHHHHHccCCCChhhHHHHHHHHH-hCCChH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCchHH
Q 046039 168 --CGEIDESRRLFDKMVSRNTVSWNSMISGYV-RNVKFK----EALELFREMQE-QNIKPSEFTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 168 --~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (502)
..++..+.-.+.....+ .+...-.... ....+. ........+.+ .....-..-...+.++..+..+++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred cccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 11111111111111000 0000000000 000000 00000000000 0000011123445566666667777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc----------hHHHHHHHHHhcCChHHHHHH
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS----------CWNSMVFGLAMNGYENEAIKL 309 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~ 309 (502)
+.+.+....... .+...++....+|...|.+..+...-....+.+-. +...+..+|.+.++++.++..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 777777766654 45555566666777777766666555444333221 222244466667788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-
Q 046039 310 FSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI-KHYSCMVDALGRAGLLEEAEKLIRSMPSD- 387 (502)
Q Consensus 310 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 387 (502)
|.+.......|+..+ +....+++....+... -+.|.. .-...-...+.+.|++..|+..|.++...
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 887665433333221 1223344444333332 223332 11122356677888888888888877653
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
| |...|..-..+|.+.|++..|+.-.+..++++|+.+..|..=+.++....+|++|.+.|++..+.+.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5 6678888888888888888888888888888888888888888888888888888888888776553
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.8e-11 Score=103.63 Aligned_cols=236 Identities=12% Similarity=0.082 Sum_probs=200.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
+.+..+|.+.|-+.+|.+.|+..++. .|-+.||..|-++|.+..+++.|..++.+-++.- +.++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 57889999999999999999998886 5677799999999999999999999999988863 55666667778888999
Q ss_pred CChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 270 GCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
++.++|.++++...+. ++.+...+...|.-.++++-|+..|+++.+.|+. ++..|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999987764 4556666777888899999999999999999976 88899999999999999999999999
Q ss_pred HhhhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 347 LMTETYKIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 347 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
+.... ...|+ ..+|..+.......||+.-|.+-|+-.... + ....++.|...-.+.|+.++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98764 33344 567888888888999999999999987654 4 5668999999999999999999999999999998
Q ss_pred CcchHHHH
Q 046039 423 ESCGYVLM 430 (502)
Q Consensus 423 ~~~~~~~l 430 (502)
-......+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 65544444
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=8.7e-09 Score=97.92 Aligned_cols=406 Identities=12% Similarity=0.059 Sum_probs=252.7
Q ss_pred CCCCChhHHHHHhccCCC--CCc-chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHH-hc-----C
Q 046039 32 SPAGDINYAYLVFTQIKK--PNL-FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYA-QL-----G 102 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~-----~ 102 (502)
...|++++|+..++.... .|. .........+.+.|+.++|..+|..+.+. .|+...|...+..+. .. .
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccccc
Confidence 567999999999988665 444 45566778889999999999999999876 466555544444443 22 2
Q ss_pred CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh-HHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHcc
Q 046039 103 LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS-EARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKM 181 (502)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 181 (502)
+.+....+++++...- |.......+.-.+.....+. .+...+..+..+.-+.+|+.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 4677788888887653 33222222222222222232 23333444443445566777766666555555555555544
Q ss_pred C------------------CCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 046039 182 V------------------SRNT--VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGE 241 (502)
Q Consensus 182 ~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 241 (502)
. .|+. .++..+...|...|++++|++++++.++.. |..+..|..-.+.+-+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 1 1222 244667788899999999999999999874 445778899999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc----------hH--HHHHHHHHhcCChHHHHHH
Q 046039 242 WIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS----------CW--NSMVFGLAMNGYENEAIKL 309 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~g~~~~a~~~ 309 (502)
..++...... .-|..+-+..+..+.+.|+.++|..++....+.+.. .| ...+.+|.+.|++..|++-
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999876 457778888889999999999999999988876522 23 4456789999999988877
Q ss_pred HHHHHHC--CC-------------CCCHHHHHHHHHHHhcCCC-------HHHHHHHHHHhhhhcCCCC-----------
Q 046039 310 FSGLQSS--NL-------------KPDYISFIAVLTACNHSGK-------VNQAKDYFTLMTETYKIKP----------- 356 (502)
Q Consensus 310 ~~~~~~~--~~-------------~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~----------- 356 (502)
|....+. .+ +.+..+|..+++..-+... ...|++++-.+........
T Consensus 328 ~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~ 407 (517)
T PF12569_consen 328 FHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENM 407 (517)
T ss_pred HHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccC
Confidence 7665442 01 1223344444433222111 1234444444433210000
Q ss_pred ChhHHHHHHHHH---HhcCCHHHHHHHHHh-----------CCC------CCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 046039 357 SIKHYSCMVDAL---GRAGLLEEAEKLIRS-----------MPS------DPDAIIWGSLLSACRKHG-NIEMAKQAAKQ 415 (502)
Q Consensus 357 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~~~------~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 415 (502)
+..--..+..-. .+...-+++...-.+ ... .+|+ ++.-+.+.. =.++|.++++-
T Consensus 408 ~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~GekL~~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 408 SAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----LGEKLLKTEDPLEEAMKFLKP 482 (517)
T ss_pred ChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc-----cHHHHhcCCcHHHHHHHHHHH
Confidence 000000111000 111111111111100 000 1222 222233333 46889999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 416 IIELDKNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
+.+..|++..+|..-..+|.|.|++--|+..+.+
T Consensus 483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999887654
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=1e-10 Score=94.54 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
+...|.-.|...|+...|..-+++..+.+. .+..++..+...|.+.|..+.|.+-|+...+. -+-+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 445566677788888888888888877542 25567777888888888888888888887752 234567777788888
Q ss_pred HhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 369 GRAGLLEEAEKLIRSMPSDPD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
|..|++++|...|++....|. ..+|..++.+..+.|+++.|.+.|++.++.+|+++.....++..+...|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888888776643 4478888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhhcCC
Q 046039 445 EERLLMKEVKI 455 (502)
Q Consensus 445 ~~~~~~~~~~~ 455 (502)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88887766554
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=1.3e-10 Score=114.20 Aligned_cols=228 Identities=11% Similarity=-0.029 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHh-----ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCChHHHHHHHhcCCC
Q 046039 219 PSEFTMVSLLNACA-----KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK---------CGCPERALQVFNTVPK 284 (502)
Q Consensus 219 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 284 (502)
.+...|...+.+.. ..+++++|...+++..+.. +.+...+..+..+|.. .+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455555555431 2245789999999999875 3345566666665542 2447899999998876
Q ss_pred CC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhH
Q 046039 285 KG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKH 360 (502)
Q Consensus 285 ~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 360 (502)
.+ ..++..+...+...|++++|...|++..+.++ .+...+..+..++...|++++|...+++..+. .|+ ...
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 54 45788888899999999999999999998752 24667888888999999999999999999864 343 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD--P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+..++..+...|++++|...++++... | ++..+..++.++...|++++|...++++....|.+......++..|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 334455566789999999999887542 4 4556778889999999999999999999888898888889998888888
Q ss_pred CCchHHHHHHHHhhhc
Q 046039 438 YQFEEAMEERLLMKEV 453 (502)
Q Consensus 438 g~~~~A~~~~~~~~~~ 453 (502)
| ++|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 5888888887654
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=2.8e-08 Score=92.18 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=20.7
Q ss_pred CCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 33 PAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
..+-++-+.+++++..+-++..-+-.|..++..+++++|.+.+...
T Consensus 150 ~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 3344444444444444433333444444444455555444444444
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-09 Score=99.75 Aligned_cols=280 Identities=11% Similarity=0.004 Sum_probs=202.7
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNA 230 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 230 (502)
++.....-..-+...+++.+..++++.+.+. +...+-.-|.++...|+..+-..+=.++.+.- |..+.+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3334444455566677777777777777553 33445555667777888777777777777763 6667777777777
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--C-cchHHHHHHHHHhcCChHHHH
Q 046039 231 CAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK--G-LSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~ 307 (502)
|...|+..+|.++|.+....+.. =...|-.+...|+-.|+.+.|...+....+. + -..+.-+.--|.+.++..-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 77778888888888877765422 2345666777788888888888777665442 1 113334455677788888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY-----KIKPSIKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
+.|.+..... +.|+..++.+.-.....+.+.+|..+|+.....- .......+++.|+.+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9988887742 3366667766666667789999999998876210 011134568889999999999999999999
Q ss_pred hCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 383 SMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 383 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
+... ..+..++.+++-.|...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8764 35888999999999999999999999999999999998887777765443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=8.2e-10 Score=99.28 Aligned_cols=227 Identities=12% Similarity=-0.016 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 046039 200 VKFKEALELFREMQEQN-IKPS--EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERAL 276 (502)
Q Consensus 200 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 276 (502)
+..+.++..+.+++... ..|+ ...|..+...+...|+.+.|...|++..+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 1121 3446666777788888888888888888765 446778888888888888888888
Q ss_pred HHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 277 QVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 277 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
..|++..+.+ ..+|..++.++...|++++|++.|++..+.+ |+..........+...++.++|...++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 8888776543 3477778888888999999999999988754 3332222222234456789999999977654 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHH--HHHHHHhCCCC-----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc
Q 046039 354 IKPSIKHYSCMVDALGRAGLLEE--AEKLIRSMPSD-----P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK-NES 424 (502)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~ 424 (502)
..|+... ..+.. ...|+... +...+.+.... | ....|..++..+...|++++|+..|+++++.+| +.+
T Consensus 195 ~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3333322 22332 33455433 33333322221 2 345789999999999999999999999999997 555
Q ss_pred chHHHHHHHH
Q 046039 425 CGYVLMSNLY 434 (502)
Q Consensus 425 ~~~~~l~~~~ 434 (502)
.....++...
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=3.7e-10 Score=98.77 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456667777777777777777777776653 4445566666667777777777777777766654 2234444455555
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCCHHHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL-KPDYISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
+...|++++|...++. ...... ......+..+..++...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555554 433211 11223444455556666666666666
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
+++.... .+.+...+..+...+...|++++|...+++... ..+...+..++..+...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666542 222344555566666666666666666665432 123445555566666667777776666665544
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=1.7e-10 Score=103.73 Aligned_cols=216 Identities=13% Similarity=0.038 Sum_probs=156.2
Q ss_pred cCchHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHH
Q 046039 234 LGAIRQGEWIHNFLVTNC-FEL--NTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
.+..+.+...+.+++... ..| ....+..+...|...|++++|...|++..+. ++..|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346677777777777543 122 2456778888999999999999999987764 4558999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
..|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999985422 4567788888889999999999999999864 343322222223345678899999999765432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQII-------ELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.+...|. ........|+...+ +.++.+. ++.|+.+..|..++.++...|++++|+..|++..+.++
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1222232 12333345555443 2444443 45667778999999999999999999999999987665
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=2.7e-08 Score=92.48 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=80.8
Q ss_pred CCChhHH--HHHHHHHHhcCCHHHHHHHHHhCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 355 KPSIKHY--SCMVDALGRAGLLEEAEKLIRSMPSD-PDA-IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 355 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
+|....| ..++..|-+.|+++.|..+++..... |+. ..|..-...+...|+.++|...++++.+++-.|..+-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4554443 45677788999999999999988765 543 3566666788889999999999999999998878777788
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 431 SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+.-..++++.++|.++.....+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 8888899999999998888877664
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=2.7e-08 Score=92.46 Aligned_cols=420 Identities=12% Similarity=0.064 Sum_probs=235.5
Q ss_pred CChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHH
Q 046039 18 KDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSL 94 (502)
Q Consensus 18 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 94 (502)
|......++.+.-+...|+-++|......-.. .+.+.|+.+.-.+...+++++|++.|...... -+-|...+.-+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDl 115 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDL 115 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 34334444444443567999999999888765 56678999998888899999999999999863 23344566666
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC----CCCeeeHHHHH------HH
Q 046039 95 FKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT----EFDVVAWNSMI------IG 164 (502)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~l~------~~ 164 (502)
.-.-++.|+++..........+.. +.....|.....++.-.|+...|..++++..+ .|+...+.... ..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 666678899999888888888763 33556677888888889999999988877654 35555544322 34
Q ss_pred HHhcCCHHHHHHHHHccCCC--Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHh-ccCchHH
Q 046039 165 LAKCGEIDESRRLFDKMVSR--NTV-SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM-VSLLNACA-KLGAIRQ 239 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~-~~~~~~~ 239 (502)
..+.|..++|.+.+...... |-. .-..-...+.+.++.++|..++..++..+ ||..-| ..+..++. -.+..+.
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHH
Confidence 56688888888887665332 222 23345677888999999999999999874 554444 44444553 2333333
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC-PERALQVFNTVPKKGL-SCWNSMVFGLAMNGYENEAIKLFSGLQS-- 315 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (502)
...+|....+.-. ....-..+--......+ .+....++....+.++ ..+..+...|-.....+-..++...+..
T Consensus 273 lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 273 LKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 3355555444311 10000000000111111 2222333333333332 2344444444332222211111111111
Q ss_pred --CC----------CCCCHH--HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 046039 316 --SN----------LKPDYI--SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 316 --~~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
.| -+|... ++..++..+-..|+++.|..+++.... -.|+ +..|..-.+.+.-.|++++|..+
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 00 023332 233445556666677777777666663 2333 34444445666666777777777
Q ss_pred HHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C------cchHHHHHHHHHhcCCchHHHHHH
Q 046039 381 IRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN---E------SCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 381 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~------~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
+++..+- +|..+=.--+.-..+.++.++|.++.......+-+ + ..+..-=+.+|.++|++..|++=|
T Consensus 428 l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 428 LDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 6666532 33333333444555666666666666655442211 0 011122244566666666665533
No 77
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=9e-10 Score=105.41 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=128.6
Q ss_pred HHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCC
Q 046039 75 FIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 75 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
+-.+... |+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. .|.
T Consensus 13 la~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep~ 82 (1088)
T KOG4318|consen 13 LALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EPL 82 (1088)
T ss_pred HHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CCc
Confidence 3334444 66666666666666666666666665 6665555555555666666666655555555443 455
Q ss_pred eeeHHHHHHHHHhcCCHHH---HHH--------------------HHHcc-CCC-ChhhHHHHHHHHHhCCChHHHHHHH
Q 046039 155 VVAWNSMIIGLAKCGEIDE---SRR--------------------LFDKM-VSR-NTVSWNSMISGYVRNVKFKEALELF 209 (502)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~---a~~--------------------~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (502)
..+|..|..+|.+.||+.. +.+ ++..+ ..| ....-...+....-.|-|+.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665543 111 11111 000 0001112223333445555555555
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 210 REMQEQN-IKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 210 ~~m~~~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
..+.-.. ..|... .++-+.... .+++-..+.....+ .+++.++..++.+-...|+.+.|..++..|.+.+.
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 4442211 011111 233332222 22222222222222 46777777777777778888888888888777664
Q ss_pred c-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 046039 288 S-----CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK 337 (502)
Q Consensus 288 ~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 337 (502)
. .|..++. .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 236 pir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 3 2333322 66777777777777888888888877777766666444
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3.2e-08 Score=85.31 Aligned_cols=413 Identities=11% Similarity=0.011 Sum_probs=238.6
Q ss_pred CCCCChhHHHHHhccCCC---CCc-chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNL-FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDG 107 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 107 (502)
....++..|+.+++.-.. ... .+--.+...+.+-|++++|...|..+.++ -.|+...+..+.-+..-.|.+.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHH
Confidence 455778888888776543 111 12223445566778999999998888775 345556666666666667777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCCh-
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNT- 186 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 186 (502)
..+.... +.++-....++..-.+.|+-++-..+-+.+.. ....-.+|.....-.-.+.+|++++.++...++
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 7665443 22333334455555566776666665555542 112233444444455678889999988866443
Q ss_pred -hhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CchHHHH------------HHHHHHHHc
Q 046039 187 -VSWNS-MISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL--GAIRQGE------------WIHNFLVTN 250 (502)
Q Consensus 187 -~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~~ 250 (502)
...|. +.-+|.+..-++-+.++++--+.. ++.+....+..+....+. |+..+.+ ...+.+.++
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 33443 445677888888888888877665 233333333333222221 2211110 111122221
Q ss_pred CC------------CC-----chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcC-------ChHHH
Q 046039 251 CF------------EL-----NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNG-------YENEA 306 (502)
Q Consensus 251 ~~------------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a 306 (502)
+. -| -+..--.|+-.|.+.+++.+|..+.+.+....+.-|-.-.-.++..| ...-|
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 10 01 12233345556788999999999988887655543333333333333 33445
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 307 IKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
.+.|+-.-+++...|. ..-.++.+++.-..++++.+.++..+..- -...|...+ .+..+++..|.+.+|+++|-.+.
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc
Confidence 5555444334333222 11223444444455788888888777652 233333333 47888888999999999988876
Q ss_pred CC--CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 386 SD--PDAIIWG-SLLSACRKHGNIEMAKQAAKQIIELDKN-ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 386 ~~--~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
.. .+..+|. .|..+|.+.++++.|..++-++ -.|. .......+++.|.+.+.+--|.+.|+.+...++.|+
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 43 3555554 4667888888888887765433 2233 334556667778888888888888888877665554
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=2.3e-09 Score=100.54 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETY-----KIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DP 388 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 388 (502)
.++..+...|...|++++|.++++.+.... +..+ ....++.+...|.+.+++.+|.++|.+... .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 456666666777777777777776665431 1111 244566777778888888878777766432 25
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 389 DA-IIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 389 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+. .+|..|+..|.+.|+++.|.++.+.+..
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44 4889999999999999999999998874
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=2.8e-08 Score=85.25 Aligned_cols=304 Identities=12% Similarity=0.099 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHH---HHHHhcCCHHHHHHHHHccCCCChhhHHH---HHHHH
Q 046039 123 QFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMI---IGLAKCGEIDESRRLFDKMVSRNTVSWNS---MISGY 196 (502)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~ 196 (502)
+.-...+...+...|++..|+.-|.... +.|+..|.++. ..|...|+...|+.-+.+.++..+..+.+ -...+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3334445555555566666666555554 44444444332 34555555555555555553322222222 22455
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC--H------------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPS--E------------FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAI 262 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~--~------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (502)
.++|.+++|..=|+..++.....+ . ......+..+...|+...|+.....+++.. +.+...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 666666666666666665431100 0 011223344555677777777777777654 4566666666
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 263 IDMYCKCGCPERALQVFNTVP---KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
..+|...|++..|+.=++... ..+...+..+-..+...|+.+.++...++-.+. .||.......-. ...
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK------klk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK------KLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH------HHH
Confidence 777777777777765554433 344445555566666667777666666666553 344432111100 011
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-----AIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
+....++.| ....+.+++-++.+..+.... +|. ...+..+-.++...+++.+|++..
T Consensus 268 Kv~K~les~-----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 268 KVVKSLESA-----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHH-----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 111111111 111233444444444433322 232 112233334444555556666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++++.+|+++.++...+.+|.-..++|.|+.-++...+.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666665555555555555555556555555555443
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=2.2e-11 Score=76.53 Aligned_cols=50 Identities=44% Similarity=0.794 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
||+.+||.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.4e-08 Score=96.53 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=155.5
Q ss_pred HHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC--
Q 046039 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG-- 137 (502)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 137 (502)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++ .+..-|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4456778888888888776542 333344556667777888888888888888888763 34555555555542222
Q ss_pred ---ChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046039 138 ---FLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQ 213 (502)
Q Consensus 138 ---~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (502)
+.+...++|+++.. -|.......+.-.+.....+ -..+..++..+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F------------------------------~~~~~~yl~~~l 138 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEF------------------------------KERLDEYLRPQL 138 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHH------------------------------HHHHHHHHHHHH
Confidence 34455555555432 12111111111111110111 123444445555
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc----C----------CCCch--hHHHHHHHHHHhcCChHHHHH
Q 046039 214 EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN----C----------FELNT--IVVTAIIDMYCKCGCPERALQ 277 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~ 277 (502)
..|+|+ +|..+-..|.......-...++...... + -+|+. .++..+...|-..|++++|+.
T Consensus 139 ~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 556443 3333333344333333333444333321 0 11222 233445666667777777777
Q ss_pred HHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC
Q 046039 278 VFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKI 354 (502)
Q Consensus 278 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (502)
++++..+.++. .|..-+..+-..|++.+|.+.++..+..+.. |...-+-.+..+.+.|++++|.+++....+. +.
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DV 293 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CC
Confidence 77766655433 5566666677777777777777777765433 5555555566666777777777777776554 32
Q ss_pred CCChhH--------HHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 355 KPSIKH--------YSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 355 ~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
.|.... ....+.+|.+.|++..|+..|..+
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 332211 133456677777777777655444
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=7.8e-10 Score=101.19 Aligned_cols=252 Identities=11% Similarity=0.054 Sum_probs=174.6
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHH
Q 046039 231 CAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 307 (502)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.++ .+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346677777777777777665 44666777777777777777777777776665443 35566666677777777777
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 308 KLFSGLQSSNLK--------PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 308 ~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
+.++.-+...++ ++...-.. ........+....++|-++....+..+|+.++..|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777766543211 00000000 11122223445556666665554666888899999999999999999999
Q ss_pred HHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 380 LIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 380 ~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
-|+.+.. +| |...|+.|+..+....+.++|+..|.+++++.|..+.+.+.|+..|...|.+++|.+.|-.+.......
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9998875 46 677999999999999999999999999999999999999999999999999999999876665322110
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 458 EPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
.- ..+..++ +.+|-.+|....-.|++.|
T Consensus 532 ~~---------------~~~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 532 RN---------------HNKAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cc---------------cccCCcc-hHHHHHHHHHHHHHcCCch
Confidence 00 0001111 4577777777666666554
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.9e-08 Score=85.54 Aligned_cols=381 Identities=13% Similarity=0.086 Sum_probs=238.0
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
+.-+...+++..|+.+++--... +-.-...+-.-+..++.+.|++++|+..+..+.... .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 45566778999999998776543 222222233334456678999999999999888754 6677777778888888899
Q ss_pred hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046039 139 LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218 (502)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (502)
+.+|..+..+.. .++..-..|.+...+.++-++-..+-+.+... ...--+|.+.....-.+.+|+++++..+.. .
T Consensus 107 Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 107 YIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 999999887754 23333445566677778777766666555432 233344555555556789999999998875 3
Q ss_pred CCHHHHHHHH-HHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHHH--HHHHhcCC----------
Q 046039 219 PSEFTMVSLL-NACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC--GCPERA--LQVFNTVP---------- 283 (502)
Q Consensus 219 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A--~~~~~~~~---------- 283 (502)
|+-...+.-+ -+|.+..-++.+.+++.-.++.- +.++...|.......+. |+..++ ..+-+.+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 4444444433 34566666777777777766652 33344444333322221 221111 11111111
Q ss_pred CCC---------------------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----cCCC
Q 046039 284 KKG---------------------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACN-----HSGK 337 (502)
Q Consensus 284 ~~~---------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~~~ 337 (502)
+.+ +.+...|+--|.+++++.+|..+.+++.- ..|-......+..+-. ....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 111 22444456667889999999988777643 2344444444433321 1123
Q ss_pred HHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 338 VNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
..-|.+.|+..-.+ +..-| ..--.++...+.-..++++.+-.++.+..- .|...-..+..+++..|++.+|.+.|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 45667777665443 33322 223345566666677888888888877652 233333457889999999999999998
Q ss_pred HHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 415 QIIELD-KNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 415 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
+....+ .+.......|+.||.+.|+.+-|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 887655 445666778899999999999998876554
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.1e-11 Score=76.57 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=31.9
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYA 99 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 99 (502)
||+.+||.+|.+|++.|++++|.++|++|.+. |++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 56666666666666666666666666666666 66666666666666654
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=4.3e-09 Score=85.32 Aligned_cols=194 Identities=11% Similarity=-0.032 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 334 (502)
+...|.-.|...|++..|..-+++..+.|+. +|..+...|.+.|+.+.|.+-|++....... +....+....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445677788889999999998888877655 7788888899999999999999998886432 44666777777788
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.|.+++|.+.|++......+.....+|..+..+..+.|+++.|...|++.... | .+.....+.....+.|++..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88999999999998887555556778888888888999999999999887652 4 455777888888999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+++.....+.+...+...+.+-.+.|+.+.|-++-..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999887777788888888888889999988887666654
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=4.2e-07 Score=86.47 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=210.4
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC-----hhhHH
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN-----TVSWN 190 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 190 (502)
.+..|..+|..+.-++...|+++.+-+.|++... -.....|+.+...+...|.-..|..+++....+. +..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556888888888899999999999999988763 2455678888888999999899999988874432 23333
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhccC-----------chHHHHHHHHHHHHcCCCC
Q 046039 191 SMISGYV-RNVKFKEALELFREMQEQ--NI--KPSEFTMVSLLNACAKLG-----------AIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 191 ~l~~~~~-~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 254 (502)
.....|. +.+..++++.+-.+.... +. ...+..|..+.-+|...- ...++.+.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 3333343 456778888887777662 11 223345555555553221 23466777888877663 3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---------
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPK----KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP--------- 320 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p--------- 320 (502)
|+.+...+.--|+..++.+.|.+..++..+ .+...|..++-.+...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 444444455567788889888888776554 35668999999999999999999998877653 2100
Q ss_pred -----C----HHHHHHHHHHHhc------C-----------------CCHHHHHHHHHHhh-------hh---------c
Q 046039 321 -----D----YISFIAVLTACNH------S-----------------GKVNQAKDYFTLMT-------ET---------Y 352 (502)
Q Consensus 321 -----~----~~~~~~l~~~~~~------~-----------------~~~~~a~~~~~~~~-------~~---------~ 352 (502)
+ ..|...++..... . .+..++......+. +. .
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0 0111111111110 0 01111111111100 00 0
Q ss_pred CCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 353 KIKPS--------IKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 353 ~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+.|. ...|......+.+.+..++|..-+.+...- -.+..|...+..+...|+.++|.+.|..++.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 01111 112334445566777777777666555432 35567777777788888888999999988889999
Q ss_pred CcchHHHHHHHHHhcCCchHHHH--HHHHhhhcC
Q 046039 423 ESCGYVLMSNLYAASYQFEEAME--ERLLMKEVK 454 (502)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~ 454 (502)
++.....++.++.+.|+..-|.. ++..+.+.+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 98888889988888887777766 677766443
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.8e-07 Score=84.17 Aligned_cols=382 Identities=14% Similarity=0.056 Sum_probs=229.9
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
+.-+..++++++|.....++... .+-+...+..=+-++++.++++.|+.+.+.-.. ...+...+..-..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 44566789999999999999864 344555677777788899999999855443211 11111221233455567899
Q ss_pred hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046039 139 LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218 (502)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (502)
.++|+..++-.. +.+..+...-...+.+.+++++|..+|+.+.+.+...+...+.+-+..-- .+... +.+......
T Consensus 95 ~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-QLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-HHHHhccCC
Confidence 999999999444 45555666667889999999999999999988777766655543221110 11111 122222223
Q ss_pred CCHHHHHHHHH---HHhccCchHHHHHHHHHHHHcCC-------CCch-------hHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 219 PSEFTMVSLLN---ACAKLGAIRQGEWIHNFLVTNCF-------ELNT-------IVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 219 ~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
| ..+|..+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-.+...|+.++|..++..
T Consensus 171 ~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 171 P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3 334544443 45678999999999998843221 0001 1123345567789999999998887
Q ss_pred CCCCCcc-------hHHHHHHHHH---------------------------------------------hcCChHHHHHH
Q 046039 282 VPKKGLS-------CWNSMVFGLA---------------------------------------------MNGYENEAIKL 309 (502)
Q Consensus 282 ~~~~~~~-------~~~~l~~~~~---------------------------------------------~~g~~~~a~~~ 309 (502)
+.+.+.. +-|.++..-. -.+.-+.+.++
T Consensus 250 ~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 250 IIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6653211 1111111000 00111111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH----
Q 046039 310 FSGLQSSNLKPDYISFIAVLTACNH--SGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIR---- 382 (502)
Q Consensus 310 ~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~---- 382 (502)
-... .+..|. ..+..++..+.+ ...+..+.+++..... +.+.+ ..+.-..+......|+++.|.+++.
T Consensus 330 ~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 330 SASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 1111 011222 334444444332 2246777777777765 33333 3444556677889999999999988
Q ss_pred ----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 383 ----SMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE----LDKN---ESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 383 ----~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+.+ .-.+.+...+...+.+.++.+.|..++..++. ..+. ....+..++..-.+.|+-++|..+++++
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 3332 13445666677778888888889999988876 1122 2234555566667789999999999999
Q ss_pred hhcC
Q 046039 451 KEVK 454 (502)
Q Consensus 451 ~~~~ 454 (502)
.+.+
T Consensus 485 ~k~n 488 (652)
T KOG2376|consen 485 VKFN 488 (652)
T ss_pred HHhC
Confidence 8744
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=3e-08 Score=93.41 Aligned_cols=267 Identities=16% Similarity=0.097 Sum_probs=144.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+....++|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556667777777776665432 2234556666777777777777766432 2234456667777777
Q ss_pred HHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 273 ERALQVFNTVPKKG--LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 273 ~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
+.|.++-.+...+. +..|-+-..-+-.+|++.+|.++|-.... |+. .+..|-+.|..+..+++.++...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 77777766665543 33455555556667777777666544322 222 34556666666666666554321
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 351 TYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
. .-..+...+..-|...|++..|..-|-+.. -|..-++.|..++-|++|-++.+. -...|..-....
T Consensus 879 d----~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~f 945 (1636)
T KOG3616|consen 879 D----HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAF 945 (1636)
T ss_pred h----hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHH
Confidence 1 113345556666777777777777776554 466666667666666666554332 233333333333
Q ss_pred HHHHHhcCCchHHHHHHHH--hhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 046039 431 SNLYAASYQFEEAMEERLL--MKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQ 498 (502)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 498 (502)
.++-.-. -+.|.+++.+ |.+.+++........++...+.++ ......+++...++...+..+
T Consensus 946 lwaksig--gdaavkllnk~gll~~~id~a~d~~afd~afdlari----~~k~k~~~vhlk~a~~ledeg 1009 (1636)
T KOG3616|consen 946 LWAKSIG--GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI----AAKDKMGEVHLKLAMFLEDEG 1009 (1636)
T ss_pred HHHHhhC--cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH----hhhccCccchhHHhhhhhhcc
Confidence 3333333 3556666554 234444322222222222223332 223344566666665554443
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=1.8e-09 Score=95.48 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc-hHHHHHHHHh
Q 046039 374 LEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF-EEAMEERLLM 450 (502)
Q Consensus 374 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 450 (502)
+.+|..+|+++..+ +++.+.+.++.++...|++++|.++++++++.+|+++.+...++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 44444444444332 33444444444444555555555555555444455544444444444444444 3333444444
Q ss_pred h
Q 046039 451 K 451 (502)
Q Consensus 451 ~ 451 (502)
.
T Consensus 263 ~ 263 (290)
T PF04733_consen 263 K 263 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=5.6e-07 Score=84.17 Aligned_cols=257 Identities=9% Similarity=-0.033 Sum_probs=132.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046039 195 GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (502)
.+...|++++|.+.+++..+.. |.+...+.. ...+.. .+....+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 4455666666666666666542 333333321 112222 23333333333321 1111122233344455666667
Q ss_pred ChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHhcCCCHHHHHHH
Q 046039 271 CPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDY--ISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
++++|...+++..+. +...+..+...+...|++++|..++++....... |+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777766665543 2335566666677777777777777766654221 222 2344566667777777777777
Q ss_pred HHHhhhhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 345 FTLMTETYKIKPSIKHY-S--CMVDALGRAGLLEEAEKL---IRSMPSD-P---DAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
++.........+..... + .++..+...|....+.++ ....... + ..........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77764321111111111 1 222223333432222222 1111100 1 11122346667778888888888888
Q ss_pred HHHhcC-C--------CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 415 QIIELD-K--------NESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 415 ~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.+.... . .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 876522 1 134455667777889999999999888876543
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.4e-06 Score=81.01 Aligned_cols=344 Identities=13% Similarity=0.113 Sum_probs=204.3
Q ss_pred hHHHHHHHH--hhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCC--------CCCcc
Q 046039 20 PIAASRILA--FCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPI--------QPQRL 89 (502)
Q Consensus 20 ~~~~~~ll~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~p~~~ 89 (502)
+.+=..+|. .| .-.|+.+.|.+-.+.+. +...|..+.+.+.+.++.+-|.-.+-.|....|. .|+ .
T Consensus 726 ~~TRkaml~FSfy-vtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFY-VTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred HHHHHhhhceeEE-EEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 334444444 34 67788888888877764 4567888888888888887776665555432111 122 2
Q ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcC
Q 046039 90 TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCG 169 (502)
Q Consensus 90 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 169 (502)
.=..+.-.....|.+++|+.+|.+-++. ..|-..|-..|.|++|.++-+.=..-.=..||......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2223333346778888888888877653 2344567778888888887664321112235555666666678
Q ss_pred CHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 170 EIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
+.+.|++.|++...+--..+..|. .++.....+.+.+ .|...|......+-..|+.+.|+.+|..+.+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 888888888876443222222221 1223333333333 3446777777777888999999998887665
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 250 NCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL 329 (502)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 329 (502)
|-++++..+-.|+.++|-++-++ ..|..+...+...|-..|++.+|+..|.+... |...|
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 33466666778888888887765 23455667788888889999999988877653 33334
Q ss_pred HHHhcCC---------------CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---------C
Q 046039 330 TACNHSG---------------KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM---------P 385 (502)
Q Consensus 330 ~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~ 385 (502)
+.|-..+ +.-.|-++|++.- .. +..-+..|-+.|.+.+|+++--+- .
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 4333222 2333344444331 11 122334566677766666642111 1
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 386 ----SDPDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 386 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
...|+...+.-...+....++++|..++-.+.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11355555555666666666666665554443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=2.9e-08 Score=87.90 Aligned_cols=228 Identities=18% Similarity=0.111 Sum_probs=150.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-LNTIVVTAIIDMY 266 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 266 (502)
....+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-++........ .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3445567777777766544 3333333 555555555555554434444444444433333222 2333333334556
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAK 342 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 342 (502)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...++.++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 6778888888888775 44556677788899999999999999999874 333 444445554432 34689999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 046039 343 DYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNI-EMAKQAAKQIIEL 419 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 419 (502)
.+|+++.. .+++++.+.+.+..+....|++++|.+++.+.... | ++.++..++.+..-.|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999876 55788889999999999999999999999887653 4 566777888888888887 7788899998889
Q ss_pred CCCCcch
Q 046039 420 DKNESCG 426 (502)
Q Consensus 420 ~p~~~~~ 426 (502)
.|+++.+
T Consensus 266 ~p~h~~~ 272 (290)
T PF04733_consen 266 NPNHPLV 272 (290)
T ss_dssp TTTSHHH
T ss_pred CCCChHH
Confidence 9987743
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.05 E-value=2.7e-07 Score=90.11 Aligned_cols=438 Identities=12% Similarity=0.044 Sum_probs=267.0
Q ss_pred HHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCC
Q 046039 7 IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSP 83 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 83 (502)
+..-+....+.|+-...-+.|+.+|....+...|.+.|++..+ .+..++......|++..+++.|..+.-..-+...
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~ 557 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP 557 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch
Confidence 3344455556666444444444443777788999999999876 5667788899999999999999998554443311
Q ss_pred CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCC-eeeHHHH
Q 046039 84 IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFD-VVAWNSM 161 (502)
Q Consensus 84 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~~l 161 (502)
...-...|..+.-.+...++...+..-|+...+.. +.|...|..++.+|.++|++..|.++|.+... +|+ ...--..
T Consensus 558 a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~ 636 (1238)
T KOG1127|consen 558 AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE 636 (1238)
T ss_pred HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH
Confidence 11111223333444667788999999999988875 44888999999999999999999999987763 232 2222222
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC----------ChhhHHHHHHHHHhCCChHHHHHHHHH-------HHHCCCCCCHHHH
Q 046039 162 IIGLAKCGEIDESRRLFDKMVSR----------NTVSWNSMISGYVRNVKFKEALELFRE-------MQEQNIKPSEFTM 224 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~-------m~~~~~~~~~~~~ 224 (502)
.-.-+..|.+.+|...+..+... -..++..+...+...|-..++..+++. ........+...+
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33456688888888888777331 122333333333333333333333332 2222212222222
Q ss_pred HHHHHHH-----------------------hccCch---H---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cC-
Q 046039 225 VSLLNAC-----------------------AKLGAI---R---QGEWIHNFLVTNCFELNTIVVTAIIDMYCK----CG- 270 (502)
Q Consensus 225 ~~ll~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g- 270 (502)
..+-.+| -..+.. + -+.+.+-.-.+ ...+...+..|+..|.+ .|
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCC
Confidence 2222221 111111 1 00011100000 11123344445444443 22
Q ss_pred ---ChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 046039 271 ---CPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 271 ---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
+...|+.++.+..+ .+...|+.|.-. ...|++.-+...|-+-+... +-...+|..+...|....+++.|...
T Consensus 795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHH
Confidence 23467777776554 345577777665 66678888887777666653 23567788888788889999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHH-------
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM-----PS--DPDAIIWGSLLSACRKHGNIEMAK------- 410 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~------- 410 (502)
|...+. -.+.+...|-.........|+.-++..+|..- .. -|+...|.+........|++++-+
T Consensus 873 f~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 873 FSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 998874 23344556655555556789888888888762 11 166666666655566666655444
Q ss_pred ---HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 411 ---QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 411 ---~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
-.+++.+...|+...+|...+....+.+.+.+|.+...++.
T Consensus 951 sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 951 SASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455556789999999999999999999999998777664
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=1.4e-06 Score=81.59 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--C---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPSD--P---------DAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~--~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
....++...|+.+.|..+++.+... . .+........++...|++++|.+.+..++.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666778888888877665431 1 112223344456788899999998888876
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=1.3e-06 Score=82.73 Aligned_cols=288 Identities=14% Similarity=0.145 Sum_probs=161.6
Q ss_pred HHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChh--hHHHHHHHHHhCCChHHHHH
Q 046039 130 IYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTV--SWNSMISGYVRNVKFKEALE 207 (502)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~ 207 (502)
...+...|+++.|..-|-+.. ....-+.+......|.+|+.+++.+...++. -|..+...|...|+++.|.+
T Consensus 713 g~hl~~~~q~daainhfiea~------~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN------CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHH
Confidence 344445555555555554332 1222345556677777788887777655433 36667777788888888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 208 LFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
+|-+.- .++-.|..|.+.|+++.|.++-.+.. |.......|-+-..-.-..|++.+|.++|-.+..++.
T Consensus 787 lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~ 855 (1636)
T KOG3616|consen 787 LFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK 855 (1636)
T ss_pred HHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH
Confidence 775431 23445667777888887777765543 3344455555555566677778888877777766653
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
.|..|-+.|..+..+++..+-... .-..|-..+..-+...|+...|+..|-+... |.+-+.+
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnm 917 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNM 917 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHH
Confidence 356677777777777766554321 1223444555566667777777766654421 2334455
Q ss_pred HHhcCCHHHHHHHHHhCCCC----CCHHHH-------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 368 LGRAGLLEEAEKLIRSMPSD----PDAIIW-------------------GSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~----~~~~~~-------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
|...+.+++|.++-+.-... .-...| ..-+...+..+-++-|..+.+-+.+ ..-+
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~ 995 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMG 995 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCc
Confidence 55556666665554332110 000011 1111222333344444444333322 2334
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+++..++..+...|++++|-+.+-+..+.+
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 556666667777888888877666655443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=7.8e-07 Score=94.22 Aligned_cols=324 Identities=11% Similarity=-0.017 Sum_probs=212.0
Q ss_pred HHHHhCCChhHHHHHHhhcCC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC----C----C----hhhHHHHHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDT---EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS----R----N----TVSWNSMISG 195 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~----~~~~~~l~~~ 195 (502)
..+...|+++.+..+++.+.. ..+..........+...|+++++...+..... . + ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556778877777777642 12333334445556678999999888876521 1 1 1122233455
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHcCC---CC--chhHHHHHHHHH
Q 046039 196 YVRNVKFKEALELFREMQEQNIKPSE----FTMVSLLNACAKLGAIRQGEWIHNFLVTNCF---EL--NTIVVTAIIDMY 266 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 266 (502)
+...|++++|...+++....-...+. .....+...+...|+++.|...+++.....- .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763212222 2345556667789999999999988775321 11 123455667788
Q ss_pred HhcCChHHHHHHHhcCCC----CC-------cchHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPK----KG-------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN--LKP--DYISFIAVLTA 331 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~ 331 (502)
...|+++.|...+++... .+ ...+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999998776442 11 1134455666777899999999988876531 112 23344456667
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHY-----SCMVDALGRAGLLEEAEKLIRSMPSD--PDA----IIWGSLLSAC 400 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~ 400 (502)
....|+++.|.+.++..............+ ...+..+...|+.+.|..++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999988875421111111111 11224455689999999998776542 111 1245677788
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 401 RKHGNIEMAKQAAKQIIELD------KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
...|++++|...++++++.. +.....+..++.++.+.|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999998742 1233467788899999999999999998887654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.2e-07 Score=81.95 Aligned_cols=415 Identities=13% Similarity=0.025 Sum_probs=248.9
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCc-chHHHHHHHHhcCCChHHHHHHHHHhH
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNL-FIWNTIIRGFSQSSTPRNAILLFIDML 79 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~ 79 (502)
.+...+.+.+... +++...|..-...| ++.|++++|++=-.+-.+ |+- ..|+....++.-.|++++|+..|.+-+
T Consensus 20 ~ai~~~t~ai~l~-p~nhvlySnrsaa~-a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 20 TAIRLFTEAIMLS-PTNHVLYSNRSAAY-ASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHHccC-CCccchhcchHHHH-HHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 4556666665543 34666677777777 999999999887766655 433 379999999999999999999999888
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhCCChhHHHHHHhhcCCCCC
Q 046039 80 VTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTII-----YMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 80 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
+. .+.|...+..+..++. .+.+. +.. .-++..+..+. +.+...-.+..-++.+.+.+. +
T Consensus 98 ~~--d~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~--~ 161 (539)
T KOG0548|consen 98 EK--DPSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT--S 161 (539)
T ss_pred hc--CCchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH--h
Confidence 64 2333445555555541 11111 000 00111111111 111111111111111111111 0
Q ss_pred eee---HHHHHHHHHhcCCHHH-HH---HHH---------HccCC--C-------------ChhhHHHHHHHHHhCCChH
Q 046039 155 VVA---WNSMIIGLAKCGEIDE-SR---RLF---------DKMVS--R-------------NTVSWNSMISGYVRNVKFK 203 (502)
Q Consensus 155 ~~~---~~~l~~~~~~~~~~~~-a~---~~~---------~~~~~--~-------------~~~~~~~l~~~~~~~~~~~ 203 (502)
... ...++.+.......+. .. ... ..+.. | -..-+..+.+...+..++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 000 0111111111000000 00 000 00000 0 1123556778888888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHH-------HHHHHHHHhcCChHHHH
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVV-------TAIIDMYCKCGCPERAL 276 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~ 276 (502)
.|++-+....+.. -+..-++....++...|.+..+........+.|.. ...-| ..+..+|.+.++++.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999888764 44445556666788888888887777776666532 12222 22444666778888999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 046039 277 QVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 355 (502)
..|.+....... -....+....+++........-.+ |.. .-...-...+.+.|++..|+..|.++++. .+
T Consensus 319 ~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P 389 (539)
T KOG0548|consen 319 KYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DP 389 (539)
T ss_pred HHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC
Confidence 988875432211 122333445556666555554432 332 22223356678899999999999999874 36
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
-|...|..-..+|.+.|.+..|..=.+...+ .| ....|..-+.++....+|++|++.|.++++.+|++..+...+..|
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 6788999999999999999999987776654 34 445777778888888999999999999999999999998888888
Q ss_pred HHhcCCchHHHHHH
Q 046039 434 YAASYQFEEAMEER 447 (502)
Q Consensus 434 ~~~~g~~~~A~~~~ 447 (502)
...+.......++.
T Consensus 470 ~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 470 VEAQRGDETPEETK 483 (539)
T ss_pred HHHhhcCCCHHHHH
Confidence 77643333334433
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=1.7e-06 Score=74.57 Aligned_cols=328 Identities=12% Similarity=0.046 Sum_probs=196.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhH-HHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI-HNTIIYMY 133 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 133 (502)
.--+...+...|++..|+.-|....+- .+.+-.++-.-...|...|+...|+.=+...++. +||-.. ...-...+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 334566677788888888888887752 2222223333445677788888888888888774 555432 23344567
Q ss_pred HhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
.+.|.++.|..=|+.+.. .|+..+- ..+..+.-..++- ......+..+...|+...|+.....+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~---~eaqskl~~~~e~------------~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLV---LEAQSKLALIQEH------------WVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchh---HHHHHHHHhHHHH------------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 788888888888877664 2322111 1111111111111 11223445566788999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH
Q 046039 213 QEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNS 292 (502)
Q Consensus 213 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 292 (502)
++.. +.|...|..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.+.++..+++..+.|+..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH--- 256 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH--- 256 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch---
Confidence 8874 6788888888899999999999988887777665 3355566667778888899998888888777655431
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-----IKHYSCMVDA 367 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 367 (502)
..+...|+++++. . .... -+......++|.++.+-.+...+. .|. ...+..+..+
T Consensus 257 -----------K~Cf~~YKklkKv--~---K~le-s~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 257 -----------KLCFPFYKKLKKV--V---KSLE-SAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred -----------hhHHHHHHHHHHH--H---HHHH-HHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 1122222222210 0 0000 011122344555555555555542 222 2223344455
Q ss_pred HHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 368 LGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+...|++.+|++...++.. .| |+.++.--..+|.--..++.|+.-|+++.+.+|++..+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5566677777766666553 24 35566666666766667777777777777777666544
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=2.8e-08 Score=78.62 Aligned_cols=92 Identities=11% Similarity=-0.159 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+..+...+...|++++|...|+.+.. .| +...|..++.++...|++++|...|+++++++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 33455566666777777666666543 23 55566666666777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHhhh
Q 046039 439 QFEEAMEERLLMKE 452 (502)
Q Consensus 439 ~~~~A~~~~~~~~~ 452 (502)
++++|+..++...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777776666654
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=4.5e-08 Score=85.50 Aligned_cols=183 Identities=10% Similarity=-0.029 Sum_probs=115.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFI 326 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~ 326 (502)
....+..++..+...|+++.|...|+++....+ .++..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455566666777777777777777776654322 24566667777777777777777777764322111 1344
Q ss_pred HHHHHHhcC--------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046039 327 AVLTACNHS--------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLS 398 (502)
Q Consensus 327 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 398 (502)
.+..++... |+++.|.+.++.+...+ +-+...+..+.... ...... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD----YLRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH----HHHHHH-----------HHHHHHHHH
Confidence 444444433 56667777777766531 11222222111110 000000 011225667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.+.+.|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78999999999999999999877654 688999999999999999999999887654
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=4.3e-08 Score=90.08 Aligned_cols=249 Identities=14% Similarity=0.038 Sum_probs=187.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
..-+.+.|+..+|.-.|+..++.+ |-+...|..|.......++-..|+..+++.++.. +.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344678888999999999988876 6678888888888888888889999999998876 45677888888889999999
Q ss_pred HHHHHHHhcCCCCCcc-hHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 046039 273 ERALQVFNTVPKKGLS-CWNSMV---------FGLAMNGYENEAIKLFSGLQ-SSNLKPDYISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a 341 (502)
..|+.+|++.....+. .|.... ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|.+++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999988876432211 110000 11112223344555555544 445457788888888888889999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 342 KDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
+..|+.+.. .-|-|..+||.|...++...+.++|+..|+++.. +|. +..+..|+.+|+..|.|++|.+.|-.++.+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999985 3344688999999999999999999999999875 575 457888999999999999999999999985
Q ss_pred CCC-----C-----cchHHHHHHHHHhcCCchHHHH
Q 046039 420 DKN-----E-----SCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 420 ~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.+. . ..+|..|-.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 543 1 2477777777777787774444
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.98 E-value=4e-08 Score=82.19 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=115.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
+..|...|+++.+....+.+... . ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 34577777777765554333221 1 012235677888888888776 446678899999999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSAC-RKHGN--IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
+++|...|++... .| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++.++...|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998865 34 677888888864 67777 5999999999999999999999999999999999999999999
Q ss_pred HhhhcCC
Q 046039 449 LMKEVKI 455 (502)
Q Consensus 449 ~~~~~~~ 455 (502)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9986654
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=5.4e-06 Score=87.87 Aligned_cols=359 Identities=10% Similarity=-0.006 Sum_probs=209.0
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG 137 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 137 (502)
...+...|++.+|...+...... +.. .............|+++.+...++.+.......+..........+...|
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 44455666666665544433211 100 1111122233455666666666655422111122333344455556677
Q ss_pred ChhHHHHHHhhcCC---CCC---e---e--eHHHHHHHHHhcCCHHHHHHHHHccCC--C--Ch----hhHHHHHHHHHh
Q 046039 138 FLSEARLMFDEVDT---EFD---V---V--AWNSMIIGLAKCGEIDESRRLFDKMVS--R--NT----VSWNSMISGYVR 198 (502)
Q Consensus 138 ~~~~a~~~~~~~~~---~~~---~---~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~ 198 (502)
+++++...+..... ..+ . . ....+...+...|++++|...++.... + +. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 77777777665421 100 1 1 111222345567888888877776532 1 11 234556667778
Q ss_pred CCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNI---KP--SEFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CFE--L-NTIVVTAIIDMY 266 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~ 266 (502)
.|++++|...+++.....- .+ ....+..+...+...|+++.|...+++..+. +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8999999988888764310 11 1234455566777889999998888776653 211 1 123344556667
Q ss_pred HhcCChHHHHHHHhcCCCC----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKK----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN--LKPDYI--SF--IAVLTAC 332 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~ 332 (502)
...|++++|...+.+.... + ...+..+...+...|++++|...+.+..... ...... .. ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7789999998888765431 1 2244456667788999999999888875421 111110 10 1112334
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------C--CHHHHHHHHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPS---IKHYSCMVDALGRAGLLEEAEKLIRSMPSD------P--DAIIWGSLLSACR 401 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~--~~~~~~~l~~~~~ 401 (502)
...|+.+.|..++...... ..... ...+..+..++...|+.++|...++++... + ...+...+..++.
T Consensus 664 ~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5578999999998776532 11111 111345677788999999999998877531 1 1235667788899
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 046039 402 KHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 402 ~~~~~~~A~~~~~~~~~~~p~ 422 (502)
+.|+.++|...+.+++++...
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999986543
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2e-05 Score=77.53 Aligned_cols=390 Identities=14% Similarity=0.130 Sum_probs=236.4
Q ss_pred HHHHHHHHHhCCC--CChHHHHHHHHhhhCCCCChhHHHHHhccCCC-C-----CcchHHHHHHHHhcCCChHHHHHHHH
Q 046039 5 KKIHAHLIKTGLA--KDPIAASRILAFCTSPAGDINYAYLVFTQIKK-P-----NLFIWNTIIRGFSQSSTPRNAILLFI 76 (502)
Q Consensus 5 ~~i~~~~~~~g~~--p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~ 76 (502)
+++.+++.+.+++ .|+...+....++ .-.+-+.+-+++++++.- + +...-|.|+-...+. +..++.+..+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAf-MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAF-MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHH-HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 3455555555553 2344445555555 555556666666666542 2 222333444433333 3344444444
Q ss_pred HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCee
Q 046039 77 DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVV 156 (502)
Q Consensus 77 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 156 (502)
++-.- ..| .+...+...+-+++|..+|+.. ..+....+.|+. ..+.+++|.+.-++.. .+.
T Consensus 1045 rLdny--Da~------~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~ 1105 (1666)
T KOG0985|consen 1045 RLDNY--DAP------DIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPA 1105 (1666)
T ss_pred HhccC--Cch------hHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChH
Confidence 44321 111 1233344445566666666544 223444444433 3455666666655543 456
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++...++..-.|... +.++-+|++.++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 7888888888899998888877654 466778889999999999999999888887766555544 467778888888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
+.+.++++ ..|+......+..-|...|.++.|.-+|..+ .-|..|...+...|++..|.+.-++.
T Consensus 1182 l~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----SN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1182 LTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----SNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 77766554 3577777778888888888888888887753 46888888888899998888765543
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHH
Q 046039 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWG 394 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 394 (502)
.+..||..+-.+|...+.+..|. +..- .+-....-...|+..|...|-+++-+.+++.... ......|.
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 25678888888887766554442 2111 2223444556678888888888888888876542 23333455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-cC-C------CCcchHHHHHHHHHhcCCchHHH
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIE-LD-K------NESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
-|.-.|.+- ++++..+.++-... ++ | +....|.-|...|.+-..||.|.
T Consensus 1318 ELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 555555443 34555554444332 11 1 12334555555565555555553
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.3e-06 Score=73.78 Aligned_cols=325 Identities=9% Similarity=0.005 Sum_probs=220.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHHH-
Q 046039 83 PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWNS- 160 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~- 160 (502)
|+.....-+.+++..+.+..++..|++++..-.++. +.+......+..+|....++..|-..++++.. .|...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 344444457788888889999999999999888775 33677788899999999999999999999875 354444443
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch
Q 046039 161 MIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMIS--GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237 (502)
Q Consensus 161 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 237 (502)
-...+.+.+.+..|+++...|... +...-..-+. .....+++..+..++++....| +..+.....-...+.|++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 246677889999999999988764 2222111122 2335678888888887765333 344444555556789999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-----------------------------
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS----------------------------- 288 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------------------- 288 (502)
+.|.+-|+...+-+--.....|+ +.-+..+.|+++.|++...++.++++.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999998866444455565 445566889999999988876543211
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 046039 289 ---CWNSMVFGLAMNGYENEAIKLFSGLQSSN-LKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364 (502)
Q Consensus 289 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 364 (502)
++|.-...+.+.|+++.|.+.+.+|--+. ...|+.|+..+.-.- ..+++....+-+.-+... .+-...||..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHH
Confidence 33444445668899999999888885432 345677776664332 234566666666666543 22346788899
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSD----PDAIIWGSLLSACR-KHGNIEMAKQAAKQI 416 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 416 (502)
+-.||+..-++-|-.++.+-..- .+...|+ |+.++. ....+++|.+-++.+
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998775532 2344444 333333 345677776665554
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=5.9e-08 Score=75.15 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
......+...+...|++++|..+|+-+.. .| +...|..|+.++...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44445566677899999999999988754 34 67789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 436 ASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
..|+.+.|.+.|+..+... ..+|+..++........+.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999987543 2467777777777777666654
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=1.2e-07 Score=74.97 Aligned_cols=124 Identities=13% Similarity=0.011 Sum_probs=103.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 307 IKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
..++++..+. .|+. +.....++...|++++|...|+.... --+.+...+..+..++.+.|++++|...|+++..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 3443 55567788899999999999999886 3355788889999999999999999999998875
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 387 -DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 387 -~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.| ++..+..++.++...|++++|+..|+++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 24 778999999999999999999999999999999999999888876543
No 109
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=2.8e-06 Score=76.47 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=122.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
+..+-..+...++.++|+.++.++++.. +-+...|.....++...| +++++...++.+.+.. +.+..+++.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3333444455556666666666666543 223333443333444444 3455555555555543 222233332222222
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
+.|+. ..++++.+++++.+.+.+ +..+|....-++...|+++++++.+++
T Consensus 118 ~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 118 KLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22221 013455555555554332 455565555555566666666666666
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 046039 348 MTETYKIKPSIKHYSCMVDALGRA---GL----LEEAEKLIRSMP-SDP-DAIIWGSLLSACRK----HGNIEMAKQAAK 414 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~ 414 (502)
+++. -+.+...|+....++.+. |. .+++.....++. ..| +...|+.+...+.. .++..+|.+++.
T Consensus 168 ~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 168 LLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 6653 123344444444333332 22 234555553333 334 55677777777766 245567888888
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC------------------CchHHHHHHHHhh
Q 046039 415 QIIELDKNESCGYVLMSNLYAASY------------------QFEEAMEERLLMK 451 (502)
Q Consensus 415 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 451 (502)
++...+|+++.++..|+.+|.... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888888887642 2366777777773
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=7.2e-05 Score=73.88 Aligned_cols=353 Identities=13% Similarity=0.083 Sum_probs=230.8
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCC-CCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPI-QPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNT 128 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 128 (502)
.|+..-+..+.++...+-+.+-+++++++.-++.. .-+...-+.|+-...+ -+...+.++.+++.... .| .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------h
Confidence 45555666677777777777777777777543111 1111122333333333 34555666666654432 11 2
Q ss_pred HHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH-hcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHH
Q 046039 129 IIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA-KCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALE 207 (502)
Q Consensus 129 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 207 (502)
+.......+-+++|..+|++.. .+..-+..+. .-+.++.|.+.-++..+ +..|..+..+-.+.|...+|++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIENIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHHhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHH
Confidence 3344556666778888877654 2222233332 34666777776666554 4678888888888888888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 208 LFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
-|-+. .|+..|.-++..+.+.|.+++-..++....+..-+|.. =+.|+-+|++.++..+.++++. .++.
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~ 1194 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNV 1194 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCc
Confidence 77442 36678889999999999999999888888777655543 3568888999888888777654 3555
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
.......+-|...|.++.|.-+|.. ..-|..+...+...|+++.|...-++. .+..+|..+..+
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFA 1258 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHH
Confidence 6666777778888888888777653 344666777777788888887654433 356788888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 368 LGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
|...+.+.-|.--=-.+. ....-..-++..|...|-+++.+.+++..+.+...+-.++.-|+..|.+- +.++-.+.+
T Consensus 1259 Cvd~~EFrlAQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HhchhhhhHHHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 876666554432100000 23345667888999999999999999999998888888888888777654 344444433
Q ss_pred H
Q 046039 448 L 448 (502)
Q Consensus 448 ~ 448 (502)
+
T Consensus 1336 ~ 1336 (1666)
T KOG0985|consen 1336 K 1336 (1666)
T ss_pred H
Confidence 3
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=9.6e-06 Score=78.02 Aligned_cols=405 Identities=14% Similarity=0.093 Sum_probs=255.9
Q ss_pred CCcchHHHHHH--HHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh-C-------C
Q 046039 50 PNLFIWNTIIR--GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ-G-------L 119 (502)
Q Consensus 50 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~ 119 (502)
=|..+-..++. .|..-|+.+.|.+-.+-+.. ...|..+.+.|.+.++.+-|.-.+-.|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 45555556654 45677999998887776653 357899999999998888887776665431 1 1
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHh
Q 046039 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVR 198 (502)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 198 (502)
..+..+-....-.....|.+++|+.+|++.. -|..|=..|...|.+++|.++-+.--+- =..||......+-.
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ck------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCK------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1111333344445567888999999998876 3555667778889999998887654221 23356666677777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.++.+.|+++|++.. .|--..+..|. .++...+.+.+. ..|...|.......-..|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHH
Confidence 888888888887653 22222222222 122222333332 23556777777777788999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCC-
Q 046039 279 FNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK-IKP- 356 (502)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~- 356 (502)
|.... -|..++...|-+|+.++|-.+-++ . -|......+.+.|...|++.+|..+|.+...-.+ +..
T Consensus 935 Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen 935 YSSAK-----DYFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred HHHhh-----hhhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99865 477788888899999999888654 2 3666777888999999999999999988753100 000
Q ss_pred -ChhHHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------H--hcCCC-
Q 046039 357 -SIKHYSCMVDALG--RAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI--------I--ELDKN- 422 (502)
Q Consensus 357 -~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~--~~~p~- 422 (502)
....-..|...+. ...+.-.|-++|++... .+...+..|-+.|.+.+|+++.=+- + .++|.
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 0000111222222 23344455566666542 1233445677788887777654221 1 25654
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhhc----CCccCCceeEEEECCEEEEEE-eCCCCCCCchHHHHHHHHHHHHH
Q 046039 423 ESCGYVLMSNLYAASYQFEEAMEERLLMKEV----KIEKEPGCSLIEVDGEVHEFV-AGGRLHPKAPEVYLLLNDLGLLI 497 (502)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~ 497 (502)
+|.....-+..+....++++|..++-..++. ++....+.+ +-..+.+.+ ..+...|+-++....|.++.+..
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~---vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR---VTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 6778888888888999999999876555431 111111111 001122222 33357888888899999999988
Q ss_pred HhcCC
Q 046039 498 QEMGS 502 (502)
Q Consensus 498 ~~~~~ 502 (502)
.++|+
T Consensus 1156 ~qQG~ 1160 (1416)
T KOG3617|consen 1156 LQQGA 1160 (1416)
T ss_pred Hhccc
Confidence 88875
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=9.9e-07 Score=89.20 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=153.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 253 ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-G-------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
+.+...|-..|......++.++|+++.+++... + ...|.++++.-...|.-+...+.|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344566777777778888888888888776542 1 237788887777778777888888888774 223356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD---AIIWGSLLSAC 400 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~ 400 (502)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+.++-+.|..++.++... |. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77788888888888888888888888554 56677888888888888888888888776542 32 34455566667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
.+.|+.+++..+|+..+...|.....|..++..-.++|+.+.+..+|+++...++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7888888888888888888888888888888888888888888888888888776543
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=1e-06 Score=87.36 Aligned_cols=134 Identities=12% Similarity=0.151 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
+..+..|.....+.|++++|..+++...+. .|+. .....++.++.+.+++++|...+++... .-+-+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 445666666666666666666666666663 3333 4455555666666666666666666664 2233445555566
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 366 DALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.++.+.|++++|..+|+++.. .|+ ..++..+..++...|+.++|...|+++++...+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 666666666666666666653 233 45666666666666666666666666666544333
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=6.9e-06 Score=80.66 Aligned_cols=245 Identities=14% Similarity=-0.007 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
..|+..+++.++.. ..+..+++.|.-. ...|++.-+.-.|-+-.... +....+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 46777777776653 3455555555433 55566666655555444433 334555555666666666666666666655
Q ss_pred CCCCcc---hHH---------------------------------------HHHHHHHhcCChHHHHHHHHHHHHC----
Q 046039 283 PKKGLS---CWN---------------------------------------SMVFGLAMNGYENEAIKLFSGLQSS---- 316 (502)
Q Consensus 283 ~~~~~~---~~~---------------------------------------~l~~~~~~~g~~~~a~~~~~~~~~~---- 316 (502)
..-++. .|- .-.......|+.++-+...+.+-..
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 543221 222 2222223344443333222222110
Q ss_pred -----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 317 -----NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS----CMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 317 -----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
+.+.....|........+.+.+..|.+...+...-...+.+...|+ .+.+.++..|.++.|..-+.....+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1222334555555555555555555555444332111122333333 3445566777777777766555433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+..+..+-+.. .-.|+++++.+.|++++.+-.++. .....++.+...++..+.|...+-+..
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 232222222222 446899999999999998654433 455666667777888888887655544
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=4.2e-06 Score=79.52 Aligned_cols=215 Identities=9% Similarity=0.083 Sum_probs=122.1
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--CChhhHHHHHHHHHh
Q 046039 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--RNTVSWNSMISGYVR 198 (502)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 198 (502)
|-...-..+...+.+.|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..+ |++..|..+.+....
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 333444555666666666666766666654 555666666666666666666555433 455556666665555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
..-+++|.++.+..-.. .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++++.|...
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 55566666665543221 11112222233566666666666655554 33455555566666666666666666
Q ss_pred HhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 279 FNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 279 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
|.....- +..+||.+-.+|.+.|+-.+|...+++..+.+ .-+...+...+....+.|.+++|++.+.++..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6654432 23466666666666666666666666666655 22344444444455566666666666666543
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=1e-06 Score=77.02 Aligned_cols=184 Identities=12% Similarity=-0.005 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---c---h
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL--NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---S---C 289 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~---~ 289 (502)
......+..+...+...|+++.|...++++....... ....+..+..++...|++++|...++++.+..+ . +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3456677888888999999999999999998865221 124667788999999999999999998875432 2 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 046039 290 WNSMVFGLAMN--------GYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360 (502)
Q Consensus 290 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (502)
+..+..++... |++++|.+.|+++.... |+. .....+..... . .. ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~------~~-~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----L------RN-RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----H------HH-HHH--------HH
Confidence 55566666654 78899999999998863 332 22221111100 0 00 000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
...+...|.+.|++++|...+++.... | ....+..++.++...|++++|..+++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 124667788999999999999887643 3 3468889999999999999999999888776653
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=5.9e-06 Score=83.87 Aligned_cols=232 Identities=12% Similarity=0.098 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC-------CCeeeHHHHHHHHHhcCCHHHHHHH
Q 046039 105 RDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE-------FDVVAWNSMIIGLAKCGEIDESRRL 177 (502)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~ 177 (502)
+.|.+....++. -|.+...|-..|......+++++|++++++.... .-...|.++++.-...|.-+...++
T Consensus 1442 esaeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344444433333 2445667888899999999999999999887642 2234788888888888888899999
Q ss_pred HHccCCC-C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC-
Q 046039 178 FDKMVSR-N-TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL- 254 (502)
Q Consensus 178 ~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 254 (502)
|+++.+- | -..|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-...
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 9998663 3 456888999999999999999999999876 34667788899999999999999999999988763221
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFIAVL 329 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~ 329 (502)
........+..-.+.|+.+.+..+|+...... ...|+..+..-.++|+.+.+..+|++....++.|-. ..|.-.+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 24445556667778999999999999877654 448999999999999999999999999998876654 3444444
Q ss_pred HHHhcCCCHH
Q 046039 330 TACNHSGKVN 339 (502)
Q Consensus 330 ~~~~~~~~~~ 339 (502)
..--..|+-.
T Consensus 1679 eyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1679 EYEKSHGDEK 1688 (1710)
T ss_pred HHHHhcCchh
Confidence 4333444433
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.5e-05 Score=66.56 Aligned_cols=225 Identities=15% Similarity=0.067 Sum_probs=132.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHH-HHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG-EWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
..+.++|...|++.....-. .... .|.......+......-++.+.- .++.+.+.......+......-...|+.
T Consensus 45 ~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~ 120 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH 120 (299)
T ss_pred HHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc
Confidence 33445555555544332222 1111 33333344444333333333332 2334444444333333333344556777
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHHHH
Q 046039 269 CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAKDY 344 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 344 (502)
.|++++|++...... +..+...=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.+ .+.+..|.-+
T Consensus 121 ~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyi 195 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYI 195 (299)
T ss_pred CCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 888888888877732 2223333344556677788888888888763 256677767666543 3467788888
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCC
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNI-EMAKQAAKQIIELDK 421 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p 421 (502)
|+++.. +.+|+..+.+....++...|++++|..++++...+ .++.+...++.+-...|.. +-..+.+.++....|
T Consensus 196 feE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 196 FEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 888875 56788888888888888888888888888877654 4566666666555555544 444556666666777
Q ss_pred CCcc
Q 046039 422 NESC 425 (502)
Q Consensus 422 ~~~~ 425 (502)
.++.
T Consensus 274 ~h~~ 277 (299)
T KOG3081|consen 274 EHPF 277 (299)
T ss_pred cchH
Confidence 7653
No 119
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=2.3e-05 Score=70.56 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCCh---hhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSMISGYVRNV-KFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
+..+-..+...+..++|+.+.++++..++ .+|+....++...| ++++++..++++.+.+ +.+..+|......+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 44555666778899999999999866444 45555556667777 5899999999998875 5566667665555555
Q ss_pred cCch--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHh
Q 046039 234 LGAI--RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAM 299 (502)
Q Consensus 234 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~ 299 (502)
.|+. +.+..+++.+++.. +-+..+++...-++...|+++++++.++++.+.| ..+|+.....+.+
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 6653 56777887777765 4466777777777777777777777777766543 3456555544443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=9.3e-07 Score=83.76 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=121.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 253 ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
+|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 3444455566777777888888888887753 566677778888888888887777766 367777777777766
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
...--+++|.++.+....+ .-..+.....+.++++++.+.|+.-.. +| ...+|..++.+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 5555566777666654332 111222223345666666666655432 22 4556666666666667777777
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+.|...+.++|++.+.|+++..+|.+.|+..+|...+++..+.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77777777777777777777777777777777776666666655
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.68 E-value=3.1e-06 Score=70.87 Aligned_cols=155 Identities=8% Similarity=0.027 Sum_probs=117.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 046039 263 IDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777787777655543322111 01223566788888888887764 347888999999999999999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHH-HHhcCC--HHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 343 DYFTLMTETYKIKPSIKHYSCMVDA-LGRAGL--LEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
..|+...+. .+.+...+..+..+ +.+.|+ .++|.+++++.... | +...+..++..+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999863 34467788888876 467777 59999999998753 5 67789999999999999999999999999
Q ss_pred hcCCCCcchHH
Q 046039 418 ELDKNESCGYV 428 (502)
Q Consensus 418 ~~~p~~~~~~~ 428 (502)
+..|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99887665443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=3.7e-06 Score=70.20 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..+...+...|+-+....+........ .-+.......+....+.|++..|+..+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 334455555666666666555543321 22444444566666777777777777777765 556667777777777777
Q ss_pred cCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 371 AGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
.|+++.|..-|.+..+ . .++...+.++..+.-.|+.+.|..++..+....+.+..+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777766543 2 355566777777777777777777777777666667777777777777777777776653
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=2.5e-06 Score=71.20 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSL 396 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 396 (502)
.|+......+...+...|+-+....+...... ..+.+......++....+.|++..|...|++... .+|...|+-+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 34333335566677778888888887777543 4445666777789999999999999999999865 3689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+.+|.+.|+++.|...|.+++++.|+++.++..++..|.-.|+++.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999988876544
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=3.1e-07 Score=72.38 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
......+...+...|++++|.+.|+.+.. .| +...|..++.++...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34455566667777777777777776643 23 55677777777777788888888888877777877777888888888
Q ss_pred hcCCchHHHHHHHHhhhcC
Q 046039 436 ASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~ 454 (502)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888777776543
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.65 E-value=0.00038 Score=64.37 Aligned_cols=397 Identities=14% Similarity=0.109 Sum_probs=237.9
Q ss_pred CCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH
Q 046039 17 AKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS 93 (502)
Q Consensus 17 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 93 (502)
+-|...|+.|+..+ ....+++++..++++.. | ....|..-|+...+.++++....+|.+.+.. ..+...|..
T Consensus 17 P~di~sw~~lire~--qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREA--QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHH--ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence 56788999999988 44499999999999876 3 4567899999999999999999999999876 345555666
Q ss_pred HHHHHHh-cCCchh----HHHHHHHHH-HhCCCC-chhHHHHHHHHH---------HhCCChhHHHHHHhhcCCCCCe--
Q 046039 94 LFKAYAQ-LGLARD----GAQLHGRVV-KQGLEF-DQFIHNTIIYMY---------ANCGFLSEARLMFDEVDTEFDV-- 155 (502)
Q Consensus 94 l~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~-- 155 (502)
-+.--.+ .++... ..+.|+-.. +.|..+ +..+|+..+..+ ....+++...+++.++...|=.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5554322 233333 223333332 344333 234555555443 2233566777888877653311
Q ss_pred -------eeHHHHHHHH-------HhcCCHHHHHHHHHccCC------CC---------------hhhHHHHHHHHHhCC
Q 046039 156 -------VAWNSMIIGL-------AKCGEIDESRRLFDKMVS------RN---------------TVSWNSMISGYVRNV 200 (502)
Q Consensus 156 -------~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~------~~---------------~~~~~~l~~~~~~~~ 200 (502)
..|..=|+.. -+...+..|.++++++.. .+ ...|-.+|..-..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1121111111 113344555555555411 00 011323332211111
Q ss_pred C--------hHHHHHHHHHH-HHCCCCCCHHHHHH-----HHHHHhccCc-------hHHHHHHHHHHHHcCCCCchhHH
Q 046039 201 K--------FKEALELFREM-QEQNIKPSEFTMVS-----LLNACAKLGA-------IRQGEWIHNFLVTNCFELNTIVV 259 (502)
Q Consensus 201 ~--------~~~a~~~~~~m-~~~~~~~~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 259 (502)
- -....-.+++. .-.+..|+.....+ .-..+...|+ -+++..+++...+.-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11122222222 22233333221111 1112223333 34455566655544333344444
Q ss_pred HHHHHHHHhcC---ChHHHHHHHhcCCCC---C-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046039 260 TAIIDMYCKCG---CPERALQVFNTVPKK---G-LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTA 331 (502)
Q Consensus 260 ~~l~~~~~~~g---~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 331 (502)
..+...--..- ..+.....++++... + ..+|..++..-.+..-...|..+|.+..+.+..+ +......++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44433211111 244455555544432 2 3478888998889999999999999999988776 56667777776
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---P--DAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~ 406 (502)
+| .++..-|.++|+.-.+.+| .++..-...++-+...|+-..|..+|++.... | ...+|..++..-..-|+.
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 65 4799999999999887544 44455567788888999999999999998754 2 456999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 046039 407 EMAKQAAKQIIELDK 421 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p 421 (502)
..+.++-++.....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887666
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=6.3e-06 Score=82.73 Aligned_cols=199 Identities=5% Similarity=-0.010 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
.++..++.+|-+.|+.+++...|+++++.. +-|....+.+...++.. ++++|.+++.+++.. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 355666777777777777777777777766 55666777777777766 777777776666543 4
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
...+++..+..+|.++...++. +++.-..+.+.+... |..--..++..+-..|...++++++..++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4555666666666666554333 222222333333322 22223344555556666667777777777
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKH-GNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 424 (502)
+.+.+. -+-|......++.+|... +.. ...|++ |-.+ ...... .++..++.-|++.+..+|.+.
T Consensus 247 K~iL~~--~~~n~~a~~~l~~~y~~k--Y~~-~~~~ee---------~l~~-s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 247 KKILEH--DNKNNKAREELIRFYKEK--YKD-HSLLED---------YLKM-SDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHhc--CCcchhhHHHHHHHHHHH--ccC-cchHHH---------HHHH-hccccCCccHHHHHHHHHHHeeecCCCE
Confidence 777652 223444445555555411 110 111111 1000 011111 355667777777776666666
Q ss_pred chHHHH
Q 046039 425 CGYVLM 430 (502)
Q Consensus 425 ~~~~~l 430 (502)
.++...
T Consensus 312 v~H~~W 317 (906)
T PRK14720 312 VYHRTW 317 (906)
T ss_pred EEEcCC
Confidence 555433
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.62 E-value=0.00055 Score=67.18 Aligned_cols=407 Identities=14% Similarity=0.115 Sum_probs=194.6
Q ss_pred CCCChhHHHHHhccCCC--CCcchHHHHHHH--HhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 33 PAGDINYAYLVFTQIKK--PNLFIWNTIIRG--FSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
..+++..|.....++.+ ||.. |...+.+ +.+.|+.++|..+++..... +.. |..|...+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34566666666666544 4432 2233332 35666777777666665533 211 4456666666666677777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH----HHHHHhhcCCCCCeeeHHHHHHHHHhcC----------CHHHH
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE----ARLMFDEVDTEFDVVAWNSMIIGLAKCG----------EIDES 174 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 174 (502)
.+|++..+. .|+......+..+|.+.+++.+ |.++++..+ .+...+-++++...+.. -..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 777776664 3345555666666666665543 444444332 23333334444333311 11223
Q ss_pred HHHHHccCCCCh--hh---HHHHHHHHHhCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 175 RRLFDKMVSRNT--VS---WNSMISGYVRNVKFKEALELFR-EMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 175 ~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
.+.++.+.+.+. .+ .......+...|.+++|++++. ...+.-..-+...-+..+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444444433220 01 1111223344566666666663 23332223333344445555566666666666666666
Q ss_pred HcCCCCchhHHHHHHHHHH----------------hcCChHHHHHHHhcCCCC-CcchHHHHHHHH---HhcCChHHHHH
Q 046039 249 TNCFELNTIVVTAIIDMYC----------------KCGCPERALQVFNTVPKK-GLSCWNSMVFGL---AMNGYENEAIK 308 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~---~~~g~~~~a~~ 308 (502)
..+.. | |...++.+. ..+..+...+...+.... .-..|-+-+.++ ...|+.+++.-
T Consensus 254 ~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 66532 1 221111111 111122222222221111 011222222222 23355555444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChh-------HHHHHHHHHHhcCC-----HHH
Q 046039 309 LFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK-------HYSCMVDALGRAGL-----LEE 376 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~ 376 (502)
.|-+- .|-+|- +..=+..|...=..+.-..++..... ..++.. -+.+.+..-.-.|. -+.
T Consensus 330 ~y~~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFKK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHHH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 33221 111221 11111222222233444444444432 122221 01222222222231 122
Q ss_pred HHHHHHhCC-------C---C--CCH---------HHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 377 AEKLIRSMP-------S---D--PDA---------IIWGSLLSACRKHGNI---EMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 377 A~~~~~~~~-------~---~--~~~---------~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
-..++++.. + . |.. .+.+.|+..+.+.++. -+|+-+++..+...|.|+.+-..++.
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLir 481 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 222222211 1 0 211 1345677888887765 46777888888899999999999999
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 433 LYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
+|.-.|-+..|.+.++.+--+.++.+
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHhcCChhHHHHHHhcchHHhhhc
Confidence 99999999999999999988877755
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.4e-05 Score=66.70 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=158.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
++-+.-.|++..++..-...... +.+...-..+.++|...|...... ..+.... .+....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 45556678888887766655433 234444445566666666654332 2222222 23333333333333334443
Q ss_pred HHHHH-HHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 273 ERALQ-VFNTVPKKG----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 273 ~~A~~-~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
+.-.. +.+.+.... ......-+..|+..|++++|++...... +......=+..+.+..+.+.|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 233333221 1222333456888999999999887622 222222333445677789999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 348 MTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
|..- .+..+.+.|..++.+ .+...+|.-+|+++..+ |++.+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9753 345566767776653 46799999999999874 8888999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHH-HHHHhh
Q 046039 422 NESCGYVLMSNLYAASYQFEEAME-ERLLMK 451 (502)
Q Consensus 422 ~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 451 (502)
++|.++..++.+-...|.-.++.+ .+..+.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999988888888877654 555554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=5e-05 Score=69.22 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAG 372 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 372 (502)
.-.+...|++++|+..++.++..- +-|+.........+...|+..+|.+.++.+... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcC
Confidence 333444455555555555554431 112233333334444555555555555555432 222 333344445555555
Q ss_pred CHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 373 LLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
++.+|+.+++..... | ++..|..|..+|...|+..++..... ..|...|++++|...+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHH
Confidence 555555555444321 2 44455555555555555444433222 2344455555555555555
Q ss_pred hh
Q 046039 451 KE 452 (502)
Q Consensus 451 ~~ 452 (502)
.+
T Consensus 452 ~~ 453 (484)
T COG4783 452 SQ 453 (484)
T ss_pred HH
Confidence 44
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.4e-05 Score=72.78 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=106.3
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHH
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-AIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~ 407 (502)
..+...|+++.|+..++.+.+ ..+-|+.........+.+.|+.++|.+.++++... |+ ...+..+..+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567899999999999987 44556666677788999999999999999998763 76 567788999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 408 MAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+|+.++.+....+|+++..|..|+.+|..+|+..+|.....+....
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887776544
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=6.3e-05 Score=75.78 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCee-eHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCC
Q 046039 123 QFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVV-AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNV 200 (502)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (502)
...+..|+..+...+++++|.++.+.... .|+.. .|..+...+.+.++...+..+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 34455555555555555555555553332 22222 222222233333333222222 2334444455
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
++.-+..++..|... .-+...+..+..+|.+.|+.+++..+++++++.. +-++.+.|.+...|... +.++|..++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 555555555555553 3344567777778888888888888888888776 55777777777777777 7777777776
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 281 TVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
+.. ..+...+++.++.+++.++...
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 642 3355555666666666666654
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.4e-07 Score=52.95 Aligned_cols=32 Identities=41% Similarity=0.492 Sum_probs=20.0
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhc
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEV 149 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (502)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.55 E-value=1.6e-06 Score=79.46 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~ 400 (502)
.....++..+...++++.|.++++++.+. .|+ ....++..+...++-.+|.+++.+...+ | +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456667777788999999999998865 254 3445788888888999999998887653 4 667777888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+.++++.|+.+.+++.+..|++...|..|+.+|...|++++|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999988876
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=3.6e-06 Score=66.23 Aligned_cols=118 Identities=15% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C
Q 046039 309 LFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D 387 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 387 (502)
.+++....... +......+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...+++... .
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555554222 3455667777888899999999999998763 355678888899999999999999999988754 2
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 388 -PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 388 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
.+...+..++.++...|++++|...|+++++.+|++..+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 467788889999999999999999999999999998775433
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=2.2e-07 Score=52.14 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=2.9e-05 Score=77.30 Aligned_cols=143 Identities=12% Similarity=0.084 Sum_probs=118.4
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAV 328 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 328 (502)
.+.++..+..|.....+.|.+++|+.+++.+.+.. ...+..++..+.+.+++++|+...++....... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 45678889999999999999999999999887643 447888899999999999999999999986432 56677788
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 046039 329 LTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLL 397 (502)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 397 (502)
..++...|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++.... |....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8889999999999999999987 33445778888999999999999999999998653 5555555443
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.46 E-value=5.2e-07 Score=61.34 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY-QFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 453 (502)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999988754
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=5.6e-05 Score=62.82 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=121.7
Q ss_pred cCChHHHHHHHhcCCCC------Ccc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 269 CGCPERALQVFNTVPKK------GLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~------~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
..+.++..+++..+... +.. .|..++-+....|+.+.|...++++...- +-+...-..-..-+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35677777777765431 222 34445556667788888888888887763 222233222223345568888
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
+|+++++.+... -+.|..++..-+......|+.-+|++-+....+. .|...|.-+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888874 3556667766666667778777887776665543 578888888888888888888888888888
Q ss_pred hcCCCCcchHHHHHHHHHhcCC---chHHHHHHHHh
Q 046039 418 ELDKNESCGYVLMSNLYAASYQ---FEEAMEERLLM 450 (502)
Q Consensus 418 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 450 (502)
=..|-++..+..++.++.-.|. .+-|.+++.+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888776665 33344444443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=8.5e-06 Score=64.79 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHH----HHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAI----IWGSLLS 398 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~l~~ 398 (502)
|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+.+... |+.. ....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333333 35666777776777766422111 1222233455666777777777777776543 3322 3445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+...|++++|+..++.. .-.+..+..+..+|.+|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777777777777552 223344556777777777777777777777653
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.5e-05 Score=64.86 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=151.6
Q ss_pred ccCchHHHHHHHHHHHHc---C-CCCch-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH---HHHHHHhcCChH
Q 046039 233 KLGAIRQGEWIHNFLVTN---C-FELNT-IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNS---MVFGLAMNGYEN 304 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 304 (502)
...+.++..+++.++... | ..++. .+|..++-+....|+.+.|..+++.+...-+.++.. -...+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 346788888888888753 3 33443 446667777788999999999999876543332222 123355679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
+|+++++.+.+.+ +.|..++..-+...-..|..-+|++-+....+ .+..|...|..+...|...|++++|.--++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999986 33666777666666777888899998888887 66789999999999999999999999999987
Q ss_pred CC-CC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 385 PS-DP-DAIIWGSLLSACRKHG---NIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 385 ~~-~~-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
.- +| ++..+..+...+...| +.+.|.+.|.+++++.|.+...+..+-.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 53 46 5667777887776555 7889999999999999976666655554433
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.41 E-value=0.0017 Score=60.19 Aligned_cols=395 Identities=10% Similarity=0.066 Sum_probs=231.7
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTI 129 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (502)
-|+.+|+.||+-+..+ ..+++.+.++++... .+-....|..-|+.-.+.++++.+..+|.+.+..-+ +...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 5788999999988666 999999999999953 344456888889999999999999999999887533 46666655
Q ss_pred HHHHHh-CCChhHHHH----HHhh----cC-CCCCeeeHHHHHHH---------HHhcCCHHHHHHHHHccCC-C-----
Q 046039 130 IYMYAN-CGFLSEARL----MFDE----VD-TEFDVVAWNSMIIG---------LAKCGEIDESRRLFDKMVS-R----- 184 (502)
Q Consensus 130 ~~~~~~-~g~~~~a~~----~~~~----~~-~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~-~----- 184 (502)
+.--.+ .|+...+.. .|+- +. ...+...|+..+.. +....+++...+++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553322 344333222 2221 11 12334445555443 3345577778888888744 2
Q ss_pred ----ChhhHHHHHHHH-------HhCCChHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHhccCc
Q 046039 185 ----NTVSWNSMISGY-------VRNVKFKEALELFREMQE--QNIKPSEF---------------TMVSLLNACAKLGA 236 (502)
Q Consensus 185 ----~~~~~~~l~~~~-------~~~~~~~~a~~~~~~m~~--~~~~~~~~---------------~~~~ll~~~~~~~~ 236 (502)
|-..|..=|+.. -+...+..|.++++++.. .|+.-+.. .|..+|.- -+.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 222222222211 123446677777777643 23211111 12222221 11111
Q ss_pred h---------HHHHHHHHHHHH-cCCCCchhHH-----HHHHHHHHhcCCh-------HHHHHHHhcCCCC----CcchH
Q 046039 237 I---------RQGEWIHNFLVT-NCFELNTIVV-----TAIIDMYCKCGCP-------ERALQVFNTVPKK----GLSCW 290 (502)
Q Consensus 237 ~---------~~a~~~~~~~~~-~~~~~~~~~~-----~~l~~~~~~~g~~-------~~A~~~~~~~~~~----~~~~~ 290 (502)
+ ....-++++.+. .+..|+.... ....+.+...|+. +++..+++..... +...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111222222221 2222222111 1112233344443 3444444443321 11223
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHH
Q 046039 291 NSMVFGLAMN---GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVD 366 (502)
Q Consensus 291 ~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 366 (502)
..+..---.. ...+....+++++...-..--..+|..++....+..-...|..+|.++.+. +..+ ++.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHH
Confidence 3222211111 135566667777665322222356777788878888899999999999887 5555 6777788887
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHhcCCch
Q 046039 367 ALGRAGLLEEAEKLIRSMPSD-PDAI-IWGSLLSACRKHGNIEMAKQAAKQIIEL--DKN-ESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~ 441 (502)
.|| .++..-|.++|+--..+ +|.. .-...+..+...++-..|..+|++++.. .|+ ...+|..+...-+.-|+..
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 665 68899999999876554 5444 4456778888899999999999999975 443 3468888887777789999
Q ss_pred HHHHHHHHhhh
Q 046039 442 EAMEERLLMKE 452 (502)
Q Consensus 442 ~A~~~~~~~~~ 452 (502)
-+.++-+++..
T Consensus 490 si~~lekR~~~ 500 (656)
T KOG1914|consen 490 SILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHH
Confidence 88888766643
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=2.2e-07 Score=65.91 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 046039 371 AGLLEEAEKLIRSMPSD-P---DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
.|+++.|+.+++++... | +...+..++.+|.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777666542 3 334555577777777777777777777 666676667777777778888888888777
Q ss_pred HHH
Q 046039 447 RLL 449 (502)
Q Consensus 447 ~~~ 449 (502)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=8.7e-07 Score=60.01 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=46.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...|++++|++.|+++++.+|+++.++..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998888754
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=4.8e-06 Score=63.86 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVLMS 431 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 431 (502)
++..++..+.+.|++++|...|+++... |+ ...+..++.++.+.|+++.|...|++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666667777777666666432 22 2345556667777777777777777777666654 34566667
Q ss_pred HHHHhcCCchHHHHHHHHhhhcC
Q 046039 432 NLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.++...|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777766554
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=7.6e-06 Score=75.52 Aligned_cols=106 Identities=19% Similarity=0.071 Sum_probs=79.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGN 405 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~ 405 (502)
-...+...|+++.|+..|+++++. .+.+...|..+..+|...|++++|+..++++.. .| +...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566778888888888888763 334566777778888888888888888887754 24 56677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
+++|+..|+++++++|+++.+...+..+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888888877777665533
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.35 E-value=1.2e-06 Score=58.62 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++..+...|++++|...|+++++.+|+++.++..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788889999999999999998899999999999999999999999998888876543
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=4e-06 Score=71.42 Aligned_cols=101 Identities=25% Similarity=0.172 Sum_probs=82.5
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~ 408 (502)
-..+.+++.+|+..|.+.++ -.+-|...|..=..+|.+.|.++.|++-.+.... .| ...+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 46677899999999999885 3344566677778889999999999998888764 34 34589999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
|++.|+++++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999999777777654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=5.1e-05 Score=60.29 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHH
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHYSCMVD 366 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 366 (502)
..++..+ ..++...+...++.+........ ......+...+...|++++|...|+.+... ...|+ ......|..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 3344444 47777888888888877643211 233444556778889999999999988875 32222 223445677
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 367 ALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.+...|++++|...++..... ..+..+...+..|.+.|++++|...|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788899999999999876544 345567778888999999999999988763
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.32 E-value=6e-06 Score=60.28 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+..++..+...|++++|...++++... | +...+..++..+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778889999999988877542 3 44677788888888999999999999999999988888999999999999
Q ss_pred CchHHHHHHHHhhhcC
Q 046039 439 QFEEAMEERLLMKEVK 454 (502)
Q Consensus 439 ~~~~A~~~~~~~~~~~ 454 (502)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999888876543
No 150
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.28 E-value=0.0029 Score=57.50 Aligned_cols=411 Identities=13% Similarity=0.107 Sum_probs=217.1
Q ss_pred CCCCChhHHHHHhccCCC---CCcc------hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHH--Hh
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLF------IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAY--AQ 100 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~ 100 (502)
-+.+++.+|.++|.++.+ .+.. .-+.++++|.. ++.+.....+....+. .| ...|..+..++ -+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~---~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ---FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh---cC-CchHHHHHHHHHHHH
Confidence 466889999999988865 2222 23456666654 4566666666666654 23 34566666553 46
Q ss_pred cCCchhHHHHHHHHHHh--CCCC------------chhHHHHHHHHHHhCCChhHHHHHHhhcCC-------CCCeeeHH
Q 046039 101 LGLARDGAQLHGRVVKQ--GLEF------------DQFIHNTIIYMYANCGFLSEARLMFDEVDT-------EFDVVAWN 159 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~ 159 (502)
.+.+..|.+.+..-... +..+ |-..-+..+.++...|.+.+++.+++++.. .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77888888777655443 2111 122225667788888999999888887654 25667777
Q ss_pred HHHHHHHhcCCHHH--------HHHHHHcc-------CC----------CChhhHHHHHHHHHhC--CChHHHHHHHHHH
Q 046039 160 SMIIGLAKCGEIDE--------SRRLFDKM-------VS----------RNTVSWNSMISGYVRN--VKFKEALELFREM 212 (502)
Q Consensus 160 ~l~~~~~~~~~~~~--------a~~~~~~~-------~~----------~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 212 (502)
.++-.+.++=-++. ....++.+ .. |.......++....-. .+..--..+++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 76555554221111 11111111 00 1111111111111110 1111122222222
Q ss_pred HHCCCCCCHHH-HHHHHHHHhccCchHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 213 QEQNIKPSEFT-MVSLLNACAKLGAIRQGEWIHNFLVTNCFEL----NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 213 ~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
...-+.|+-.. ...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-+..-++
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 33334454332 2233333333 5566666555555443221 245667777777888888888887775543322
Q ss_pred c---------hHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCC-HHHHHHHHHHhhhh
Q 046039 288 S---------CWNSMVFGLAM----NGYENEAIKLFSGLQSSNLKPDYI--SFIAVLTACNHSGK-VNQAKDYFTLMTET 351 (502)
Q Consensus 288 ~---------~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 351 (502)
. +-..+-+..+. .-+...=+.++......++.-..- -...-+.-+.+.|. -++|+++++.+.+-
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 2 11122222221 112233344555555543321111 11112223555565 78889998888752
Q ss_pred cCCCCChhHHHHHHH----HHHhc---CCHHHHHHH---HHhCCCC----CCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 046039 352 YKIKPSIKHYSCMVD----ALGRA---GLLEEAEKL---IRSMPSD----PDAIIWGSLLSA--CRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~---~~~~~~~----~~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 415 (502)
.+-|..+-|.+.. .|... ..+.+-..+ .++..-. .+...-+.|..+ +...|++.++.-.-.-
T Consensus 410 --t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 410 --TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2223333333222 22221 112222222 1222111 233455555544 5679999999998888
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 416 IIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+.+..| ++.+|..+|.++....++++|..++..+.-
T Consensus 488 L~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 488 LTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 889999 899999999999999999999999988753
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=3e-05 Score=71.32 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 046039 160 SMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 160 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (502)
+++..+...++++.|+.+|+++.+.++.....++..+...++..+|.+++++.++.. +.+..........+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 455566667888888888888877777777778888888888888888888888653 5566666666677788888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK 284 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (502)
|..+.+++.... +.+..+|..|..+|...|+++.|+..++.++-
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888764 44566888888888888888888888887763
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1e-05 Score=69.43 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=95.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchH
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKH---GNIEMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~ 427 (502)
..+-|...|-.|...|.+.|+++.|..-|.+... .+++..+..+..++..+ ....++..+|+++++.+|+|+...
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3456789999999999999999999999988754 25677777777776543 356899999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEE
Q 046039 428 VLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLI 464 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 464 (502)
..|+..+...|++.+|...++.|.+......|+.+.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999999887766665544
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.5e-05 Score=68.49 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=109.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-------------
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY------------- 361 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 361 (502)
.++.-.|++++|...--...+.... +......--.++.-.++.+.+...|++.+. ..|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 3456678888888776666654321 222222222234456788888888887763 33432211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS------DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
..=..-..+.|++.+|.+.|.+... +|+...|.....+..+.|+..+|+.-.+.+++++|.-...+..-+.|+.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 1112234578899999999988764 2566678788888889999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhcC
Q 046039 436 ASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~ 454 (502)
..++|++|.+.++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999888775443
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=68.47 Aligned_cols=107 Identities=21% Similarity=0.158 Sum_probs=79.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCC
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGL 373 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 373 (502)
.-+.+.+++.+|+..|.+.++... -|.+-|..-..+|.+.|.++.|++-.+..+. +.|+ ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 446678899999999999998643 3667778888889999999999888887764 3443 6788889999999999
Q ss_pred HHHHHHHHHhCCC-CCCHHHHH-HHHHHHHhcCC
Q 046039 374 LEEAEKLIRSMPS-DPDAIIWG-SLLSACRKHGN 405 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~ 405 (502)
+++|++.|++... .|+..+|. .|-.+-.+.+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999988775 47655553 33333333333
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=3.2e-05 Score=59.19 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSL 396 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l 396 (502)
.++..+...+...|++++|...|+.+.....-.+ ....+..+..++.+.|++++|...|+.+.. .|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455566677778888888888888876422111 134556678888888999999988887754 233 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
+.++...|++++|...++++++..|+++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88899999999999999999999998775443
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=2.5e-05 Score=64.25 Aligned_cols=97 Identities=15% Similarity=0.063 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
...+..+...+...|++++|...|++.... |+ ...+..++.++.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445667777788888888888888877531 22 3578888899999999999999999999999999999999999
Q ss_pred HHHhcCC--------------chHHHHHHHHhhhcC
Q 046039 433 LYAASYQ--------------FEEAMEERLLMKEVK 454 (502)
Q Consensus 433 ~~~~~g~--------------~~~A~~~~~~~~~~~ 454 (502)
+|...|+ +++|.+++++....+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988777 455555555555433
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.14 E-value=4.2e-05 Score=70.66 Aligned_cols=97 Identities=12% Similarity=-0.031 Sum_probs=78.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG 372 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (502)
....+...|++++|+..|+++++... .+...+..+..++...|++++|+..++.+... .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 45567788999999999999998753 36678888888999999999999999999863 3445778888899999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHH
Q 046039 373 LLEEAEKLIRSMPS-DPDAII 392 (502)
Q Consensus 373 ~~~~A~~~~~~~~~-~~~~~~ 392 (502)
++++|...|+++.. .|+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 99999999988764 354333
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=98.12 E-value=7.3e-05 Score=58.49 Aligned_cols=89 Identities=18% Similarity=0.088 Sum_probs=78.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 441 (502)
...-+...|++++|..+|+-+.. . -+...|..|+.++...+++++|+..|..+..+++++|......+.||...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445689999999999987643 2 467778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 046039 442 EAMEERLLMKE 452 (502)
Q Consensus 442 ~A~~~~~~~~~ 452 (502)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.10 E-value=1.1e-05 Score=55.44 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
...|.+.+++++|.++++++++++|+++..+...+.++...|++++|.+.++...+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999886554
No 160
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=7.8e-06 Score=46.65 Aligned_cols=33 Identities=42% Similarity=0.811 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPS 220 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 220 (502)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999998888887
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.08 E-value=1.1e-05 Score=53.97 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
+...+.+.|++++|...|+++... | +...|..++.++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788999999999999998764 6 566889999999999999999999999999999875
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=9e-06 Score=46.02 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKP 219 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 219 (502)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 163
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=8.6e-06 Score=46.46 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=24.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCC
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQ 87 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 87 (502)
+||.+|.+|++.|++++|.++|++|.+. |++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER-GIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC
Confidence 5777777777777777777777777776 77776
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.03 E-value=6e-05 Score=61.71 Aligned_cols=94 Identities=13% Similarity=-0.148 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
....+..++..+...|++++|...|++.... | ...+|..++..+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677778888889999999998887431 2 2357889999999999999999999999999999999888888
Q ss_pred HHHH-------hcCCchHHHHHHHHh
Q 046039 432 NLYA-------ASYQFEEAMEERLLM 450 (502)
Q Consensus 432 ~~~~-------~~g~~~~A~~~~~~~ 450 (502)
.++. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888666665544
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.0003 Score=62.66 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA-CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57777888888888999999999998543 3344555555444 33356778899999999984 56678888899999
Q ss_pred HHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+...|+.+.|..+|++.... |. ...|...+..-.+.|+.+.+..+.+++.+..|++..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999998765 33 3489999999999999999999999999988885544
No 166
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.99 E-value=6e-05 Score=66.99 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhh---hhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMT---ETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-------D-PDA 390 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~ 390 (502)
..|..|...|.-.|+++.|+...+.=. +.+|-.. ....+..+..++.-.|+++.|.+.|+.... + ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345555556666778888877655421 2223222 234566677778888888888887765321 1 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIEL----D--KNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
....+|+++|.-..++++|+..+.+-+.+ + -.....+..|+.+|...|..++|+.+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667888888888888888888776542 2 2245578888888888888888887765544
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.023 Score=56.44 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 4 LKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
|.+-...+.+. .|+...+..+=+.-..+.|+.++|..+++.... .|..+...+-..|...++.++|..+|+....
T Consensus 28 al~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 28 ALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44444444443 455555544444434688999999999988754 5777889999999999999999999999985
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-C---------hhHHHHHHhhcC
Q 046039 81 TSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG-F---------LSEARLMFDEVD 150 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a~~~~~~~~ 150 (502)
. -|+..-...+..+|.+.+.+..-.++--++-+. .+-+...+=++++.....- . ..-|.+.++.+.
T Consensus 106 ~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 106 K---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred h---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 4 577777777888888888877655554444443 3334444444555444321 1 233555555555
Q ss_pred CCC-Ceee---HHHHHHHHHhcCCHHHHHHHHHc-----cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 151 TEF-DVVA---WNSMIIGLAKCGEIDESRRLFDK-----MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 151 ~~~-~~~~---~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
..+ ...+ .......+...|.+++|++++.. ....+...-+.-+..+...++|.+..++-.++...|
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 444 2222 12233455668889999998833 233344445566777888889999999888888876
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=8.8e-05 Score=53.90 Aligned_cols=93 Identities=24% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHG 404 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 404 (502)
.+...+...|++++|..+++...+. .+.+...+..+...+...|++++|...++..... | +...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444555566666666666666542 2223345555666666667777777776665431 2 3346667777777777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 046039 405 NIEMAKQAAKQIIELDK 421 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p 421 (502)
+++.|...+.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777776665
No 169
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.5e-05 Score=45.08 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=21.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP 86 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p 86 (502)
.+|+.++.++++.|+++.|.++|+.|.+. |++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~-gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ-GVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence 45666666666666666666666666665 6555
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.00025 Score=58.27 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.+..+...+...|++++|...|++....+..+. ...+..+..++...|++++|...+++.... .+.+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 455555666666777777777776665433222 345666677777777888888777777653 2233555556666
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 367 ALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+|...|+...+..-++... ..+++|.++++++++.+|++ +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6666666655544333221 23678889999999989887 333333444444
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0011 Score=57.52 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++..|.+.|.+..|..-++.+++.-|+.+ .....++.+|...|..++|..+.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 456778999999999999999999777754 567888899999999999998876653
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=3.3e-05 Score=54.68 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDP-DAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....| +......++.+|.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 55566666666665542211233333445566666666666666665521112 22333344556666666666666665
Q ss_pred H
Q 046039 415 Q 415 (502)
Q Consensus 415 ~ 415 (502)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.95 E-value=0.00047 Score=66.64 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
..|..+.......|++++|...++++.. +|+...|..++..+...|++++|.+.+++++.++|.+++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4444444444445555555555555443 245555555555555555555555555555555555553
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.012 Score=56.50 Aligned_cols=250 Identities=12% Similarity=0.020 Sum_probs=144.9
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH----H--HHHHHhcCCchhHHH
Q 046039 36 DINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS----L--FKAYAQLGLARDGAQ 109 (502)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~----l--~~~~~~~~~~~~a~~ 109 (502)
.+++|.+..+.- |.+..|..+.......-.++.|...|-+...-.|++.-...-.. + ....+--|++++|.+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 345566555543 56677887777666666667776666655433233211110000 0 111223478888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC----CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 046039 110 LHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE----FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN 185 (502)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 185 (502)
+|-++-++. ..+..+.+.|||-...++++.-... .-...|+.+...++....|++|.+.|......
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~- 825 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT- 825 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 887775543 2355667788888888888765432 22346778888888888888888877664321
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
...+.++.+..++++-..+... ++.+....-.+...+.+.|.-++|.+.+-+. +. | .+.+..
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~t 887 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHT 887 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHH
Confidence 2345555555555554443333 3555566667777788888777777665332 21 1 123455
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchH--------------HHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPKKGLSCW--------------NSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
+...++|.+|.++-+...-+.+.+. ..-|..+.+.|++-.|-+++.+|.+
T Consensus 888 Cv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 6677777777777766554433321 1123445556666666666666654
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0032 Score=56.51 Aligned_cols=267 Identities=11% Similarity=-0.037 Sum_probs=131.2
Q ss_pred HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHH
Q 046039 98 YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESR 175 (502)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 175 (502)
+.+..++..|+..+...++.++. +..-|..-+..+...|++++|.--.++-.. +.......-.-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 44556677788888888877533 455666666666677777776655543332 222333444445555555555555
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNI-KPSEFTMVSL-LNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
+.++. ...| ....++..++....... +|...++..+ ..++...|+.++|..+-..+++.. .
T Consensus 138 ~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 55551 1111 11222233333222221 2333344333 234456677777776666665543 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---------------hHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 046039 254 LNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS---------------CWNSMVFGLAMNGYENEAIKLFSGLQSS-- 316 (502)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 316 (502)
.+....-.=..++.-.++.+.|...|++..+.++. .|..-..-..+.|++..|.+.|.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 11111111112233455666777777766655443 1222233345566666666666666543
Q ss_pred -CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 317 -NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 317 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
+..|+...|.....+..+.|+..+|+.--+...+ +.+. ...|..-..++.-.+++++|.+-|++..
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555566666666665555442 1121 1122222233444555666666655543
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.002 Score=57.69 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred HHHHHhcC-CCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHH-HH
Q 046039 328 VLTACNHS-GKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P----DAI-IW 393 (502)
Q Consensus 328 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~-~~ 393 (502)
+...|... |+++.|++.|++...-+.-... ..++..++..+.+.|++++|.++|+++... + +.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 44456666 7777777777776542211111 345556677788888888888888765321 1 221 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHH
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNES-----CGYVLMSNLYA 435 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~ 435 (502)
...+-++...|++..|.+.+++..+.+|.-. .+...|+.++.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 3445566778888888888888888776533 24444554443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.012 Score=52.69 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CCCCC--hhHH
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNL-----KPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETY-KIKPS--IKHY 361 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~ 361 (502)
..++..+.+.|++++|+++|++...... +.+.. .|...+-++...|+...|.+.++...... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 3456667777777777777777665322 12222 23333445566788888888888776431 23223 3445
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHhCC
Q 046039 362 SCMVDALGR--AGLLEEAEKLIRSMP 385 (502)
Q Consensus 362 ~~l~~~~~~--~g~~~~A~~~~~~~~ 385 (502)
..|+.+|-. ...+.+|..-|+.+.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 566666643 234677777777765
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00023 Score=51.40 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=68.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCC-CCCcccHHHHHHHHHhcC--------CchhHHHHHHHHHHhCCCCchh
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPI-QPQRLTYPSLFKAYAQLG--------LARDGAQLHGRVVKQGLEFDQF 124 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 124 (502)
+....|..+...+++.....+|+.+++. |+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445567777789999999999999998 99 999999999999887653 2446788999999999999999
Q ss_pred HHHHHHHHHHh
Q 046039 125 IHNTIIYMYAN 135 (502)
Q Consensus 125 ~~~~l~~~~~~ 135 (502)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00015 Score=64.85 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
..++..+..+|.+.+++..|++...++++++|+|+..++.-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345667777888888888888888888888888888888888888888888888888887763
No 180
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.79 E-value=6.7e-05 Score=68.69 Aligned_cols=65 Identities=15% Similarity=-0.056 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG---YVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...|+.++.+|...|++++|+..|+++++++|++... |+.++.+|..+|+.++|+..++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678888888888888888888888888888888754 888888888888888888888888765
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.79 E-value=0.00017 Score=62.93 Aligned_cols=85 Identities=8% Similarity=-0.055 Sum_probs=42.8
Q ss_pred HhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCc
Q 046039 369 GRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVLMSNLYAASYQF 440 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 440 (502)
.+.|++++|...|+.+... |+ +..+..++.+|...|++++|...|+++++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445555555555544431 22 1244445555555555555555555555554443 23344445555555555
Q ss_pred hHHHHHHHHhhhc
Q 046039 441 EEAMEERLLMKEV 453 (502)
Q Consensus 441 ~~A~~~~~~~~~~ 453 (502)
++|.++++.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=6e-05 Score=51.04 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHG-NIEMAKQAAKQIIELDK 421 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 421 (502)
+...|..+...+...|++++|+..|++... .| ++..|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456788888899999999999999988764 34 5668899999999999 79999999999999888
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.0052 Score=48.86 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---DAIIWG 394 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~ 394 (502)
.|+...-..+..+....|++.+|...|++.... -+..|....-.+.++....+++..|...++.+.+- | ++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456655666777777888888888888877663 45556777777777777888888888877776542 1 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+...+...|++..|...|+.++..-|. +......+..+.++|+.++|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5677778888888888888888876665 334455556677788777776544444
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=2.1e-05 Score=53.15 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=37.3
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
..|++++|.++|+++.. .| +...+..++.+|.+.|++++|.++++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45666666666666543 23 4555566666666666666666666666666666655554443
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00033 Score=64.90 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=48.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcC-CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTS-PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
....++..+....+.+.+..++-+.+... ....-..|..++++.|...|..+.++.+++.=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33444444444444555555555444321 01112234445555555555555555555555555555555555555555
Q ss_pred HHhCCChhHHHHHHhhc
Q 046039 133 YANCGFLSEARLMFDEV 149 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~ 149 (502)
+.+.|++..|.++...|
T Consensus 148 fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEM 164 (429)
T ss_pred HhhcccHHHHHHHHHHH
Confidence 55555555555555444
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.00031 Score=52.81 Aligned_cols=86 Identities=21% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD----P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN---ESCGYVLMSNLYA 435 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 435 (502)
+..++-..|+.++|+.+|++.... + -...+..+..++...|++++|..++++.+...|+ +..+...++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445566677777777777766542 1 1235556777777778888888888877776676 5566666677777
Q ss_pred hcCCchHHHHHHHH
Q 046039 436 ASYQFEEAMEERLL 449 (502)
Q Consensus 436 ~~g~~~~A~~~~~~ 449 (502)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887775543
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0014 Score=63.47 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHHHhc--C---CCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 046039 317 NLKPDYISFIAVLTACNH--S---GKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRA--------GLLEEAEKLIR 382 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 382 (502)
..+.+...|...+++... . ++...|..+|++..+. .|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345677778777777432 2 2367888888888753 454 44444444433321 12344555555
Q ss_pred hCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 383 SMPS----DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 383 ~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+... ..++..|..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++....++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4322 23557788887777788999999999999999999 5789999999999999999999999998766543
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.73 E-value=2.2e-05 Score=43.96 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
+|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0011 Score=54.36 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACR 401 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~ 401 (502)
+..+...+...|++++|...|+.......-++ ...++..+..+|...|++++|...+++.... | ....+..++..+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34444444445555555555555543211111 1224455555555555555555555554321 2 2233444444444
Q ss_pred -------hcCCHH-------HHHHHHHHHHhcCCCCc
Q 046039 402 -------KHGNIE-------MAKQAAKQIIELDKNES 424 (502)
Q Consensus 402 -------~~~~~~-------~A~~~~~~~~~~~p~~~ 424 (502)
..|+++ +|..+++++++.+|++.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 556655 55666666667777644
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.69 E-value=7.9e-05 Score=44.90 Aligned_cols=42 Identities=19% Similarity=0.398 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
.+|..+..+|...|++++|+++|+++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999888874
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.0011 Score=51.75 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
+....-.+...+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|...|....... +.++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33344445555666777777777777766654 4455555566666666777777777777776665 345666666667
Q ss_pred HHHhcCChHHHHHHHhcC
Q 046039 265 MYCKCGCPERALQVFNTV 282 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~ 282 (502)
++...|+.+.|.+.|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777777777776666653
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=6.5e-05 Score=41.30 Aligned_cols=29 Identities=52% Similarity=0.906 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.67 E-value=0.012 Score=56.15 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
+|-.+-++++-+++-. .+..+...+...+.+...+..|-++|..+-.. ..+++.....+++++|..
T Consensus 729 ~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFA 794 (1081)
T ss_pred ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHh
Confidence 4444444444444332 24455555555566667777888888877432 346677778888888888
Q ss_pred HHHhCCCC-CCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 380 LIRSMPSD-PDAI-----------IWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 380 ~~~~~~~~-~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+-++.++- |++. -|.-.-.+|.+.|+..+|.++++++..
T Consensus 795 lAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 795 LAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88877652 3322 122223455666677777777766653
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.0013 Score=47.56 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------chHHHHHHHHHHHHcCCCCchhHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNI-KPSEFTMVSLLNACAKLG--------AIRQGEWIHNFLVTNCFELNTIVV 259 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 259 (502)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-....+|+.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999987653 345678899999999999999999
Q ss_pred HHHHHHHHh
Q 046039 260 TAIIDMYCK 268 (502)
Q Consensus 260 ~~l~~~~~~ 268 (502)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987764
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0028 Score=47.71 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=63.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHH
Q 046039 292 SMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDAL 368 (502)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 368 (502)
.+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888888888888888776644 34566677778888888888888888876421101 222223344566
Q ss_pred HhcCCHHHHHHHHHhCC
Q 046039 369 GRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~ 385 (502)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77888888888765443
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.61 E-value=0.039 Score=47.96 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCchHHHHHHHHHHHHcCC
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM---VSLLNACAKLGAIRQGEWIHNFLVTNCF 252 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 252 (502)
...+-.....+...|++++|.+.|+.+...- +-+.... ..++.++.+.++++.|...+++.++..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3333344555667788888888888887753 2222222 3455667778888888888888777653
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.053 Score=49.05 Aligned_cols=101 Identities=24% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 333444444444444433331 24555555555555555555554443221 1123444555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 374 LEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
..+|..+..++. +..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHH
Confidence 555555555532 12233444555555555444
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.58 E-value=0.0015 Score=55.23 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHHH
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESC---GYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 445 (502)
++..|.+.|.+..|..-++.+++.-|+.+. ....++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 567899999999999999999999888654 57778889999999885543
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.012 Score=46.95 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
...-.|..++...|++.+|...|++...--...|......+.++....+++..|...++.+.+...-.-++...-.+.+.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 34556777888888888888888888776566788888888999889999999999999887643222234445567788
Q ss_pred HHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
|...|+..+|+..|+...+- |+...-......+.++|+.+++..-+..+.+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88999999999999887753 6666655566677788877776665555543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.54 E-value=0.0016 Score=57.02 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSL 396 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l 396 (502)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+... | ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444567899999999999887542221 1346677888999999999999999888642 3 34566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+.++...|++++|..+|+++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 88888999999999999999999998764
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00013 Score=40.00 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=18.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 5666666666666666666666666654
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.00041 Score=47.52 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
...|.+.+++++|.++++.+..- | ++..|...+.++...|++++|.+.|+++++..|+++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35678899999999999988753 4 5668888999999999999999999999999998887655443
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.48 E-value=0.0017 Score=60.30 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
.+++..|...|..+.++.+++.=...|+-||..+++.++..+.+.|++..|.++...|...
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555555555555555555555555555554443
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.48 E-value=0.0002 Score=49.87 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIEL----DKN---ESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+++.++..|...|++++|+..|++++++ .++ -..++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777788888888888888877752 222 24567778888888888888888777664
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.47 E-value=0.011 Score=56.19 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 046039 168 CGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
.|-.+-++++=.++...+..+...+...+.+...+.-|-++|..|-. ...++..+...+++.+|..+.+..
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 33344445555555445555555555556666667777777776642 224555666777777777666554
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
.+. . ..+|-...+.++...++++|.+.|. +.|+..+|..+++++..
T Consensus 800 Pe~--~--~dVy~pyaqwLAE~DrFeEAqkAfh------------------kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 800 PEF--K--DDVYMPYAQWLAENDRFEEAQKAFH------------------KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ccc--c--ccccchHHHHhhhhhhHHHHHHHHH------------------HhcchHHHHHHHHHhhh
Confidence 332 1 2233333444455555555544433 34555566666555543
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.08 Score=47.92 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK 402 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (502)
.+.+..+.-|...|+...|.++-.+. ++ |+...|..-+.+|+..++|++-..+... +.++..|...+.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677788888887776555 44 6788888999999999999998887654 3456789999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.|+..+|..+..++ .+..-...|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988882 125566788999999999875433
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.46 E-value=0.018 Score=52.49 Aligned_cols=170 Identities=19% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKK-------GLSCWNSMVFGLAM---NGYENEAIKLFSGLQSSNLKPDYISFIA 327 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 327 (502)
+...++-+|....+++..+++++.+... ....-...+-++.+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555566677777777777766553 11122334445555 7888888888888665556677778777
Q ss_pred HHHHHhc---------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---Hh-CCC----
Q 046039 328 VLTACNH---------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL-LE---EAEKLI---RS-MPS---- 386 (502)
Q Consensus 328 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~~~---- 386 (502)
+.+.|-. ....++|+..|.+.-. +.|+...--.++..+...|. ++ +..++- .. +..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7766532 1236677777776543 33443222222223333332 22 222221 11 111
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 387 --DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 387 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
..+-..+.+++.++.-.|++++|.+.++++.++.|+....-.++
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 14555667899999999999999999999999988766443333
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.015 Score=49.10 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-----HH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY-----SC 363 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 363 (502)
..+.++..+.-.|.+.-.+..+++.++.....++.....+.+.-.+.|+.+.|..+|+...+. .-+.+.... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445667777778889999999999999877778888888999999999999999999977654 222332222 23
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
....|.-.+++.+|...+.+++.. .++...+.-.-+..-.|+...|++.++.+++..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 334466778899999999888753 34555566555666678999999999999998887544
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0018 Score=57.95 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChh
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQ----SSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTLMTE----TYKIKPSIK 359 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 359 (502)
+|..|...|.-.|+++.|+..-+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... ...-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 66677777777889999887654422 22322 2335677888888899999999999887532 111122345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-Ccc
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-------D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL-----DKN-ESC 425 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~-~~~ 425 (502)
+..+|...|.-..++++|+.++.+-.. . .....+.+|+.++...|..++|+.+.+..++. +|. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 566788888888899999998866432 1 34567888999999999999999999888762 232 234
Q ss_pred hHHHHHHHHHhcCCch
Q 046039 426 GYVLMSNLYAASYQFE 441 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~ 441 (502)
....|...-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 4455555555555543
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.036 Score=46.90 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHH-----H
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTA-----I 262 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 262 (502)
+.+.++.++.-.|.+.-....+++.++...+.++.....+++...+.||.+.|..+|+...+..-..+...++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566677777788888888888888876666777778888888888888888888887765443333333333 3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 263 IDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
...|.-.+++..|...+.++...| +..-|.-.-+..-.|+..+|++.++.|.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334555677777888887776643 3344554455555678888888888887753
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.061 Score=52.01 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=32.6
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 046039 35 GDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 112 (502)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 112 (502)
|.+++|.+++-.+.+.|. -|....+.|+|-.+.++++.=-.......-...|+.+...++....+++|.+.|.
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554332 2344445555555555443211100000111234445555555555555544443
No 212
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.43 E-value=0.0012 Score=58.92 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA-LGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSA 399 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 399 (502)
.+|..++..+.+.+..+.|..+|.+..+.. ..+..+|...+.. |...++.+.|..+|+...+. .+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467778888888888999999999998642 2344455555554 33357777799999998754 477889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...|+.+.|..+|++++..-|.+. .+|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998665544 58888888888889999999998888754
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.42 E-value=0.097 Score=48.09 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 360 HYSCMVDA--LGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 360 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
.-|.|.++ +...|++.++.-.-.-+.. .|++.+|.-++-++...+++++|..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44444443 3456777776643222221 36777777777777777777777666654
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.41 E-value=0.1 Score=47.91 Aligned_cols=397 Identities=11% Similarity=0.056 Sum_probs=219.7
Q ss_pred CCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCc---chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH
Q 046039 17 AKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNL---FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS 93 (502)
Q Consensus 17 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 93 (502)
+.|+..|-.|+..+ .-.|..++.+++++++..|-+ .+|..-+++-...+++.....+|.+.+.. . .+...|..
T Consensus 39 PtnI~S~fqLiq~~-~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~--l~ldLW~l 114 (660)
T COG5107 39 PTNILSYFQLIQYL-ETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-S--LNLDLWML 114 (660)
T ss_pred chhHHHHHHHHHHH-hhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-h--ccHhHHHH
Confidence 45577777888877 888888888888888877443 36777777777777888888888888765 3 34445555
Q ss_pred HHHHHHhcCCc------hhHHHHHHHHHH-hCCCC-chhHHHHHHHHHHh---CCC------hhHHHHHHhhcCCCCC--
Q 046039 94 LFKAYAQLGLA------RDGAQLHGRVVK-QGLEF-DQFIHNTIIYMYAN---CGF------LSEARLMFDEVDTEFD-- 154 (502)
Q Consensus 94 l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~---~g~------~~~a~~~~~~~~~~~~-- 154 (502)
-+.--.+.++. ....+.|+-... .++.| ....|+..+..+.. .|. ++.....+.++...|-
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 55443333211 112233333333 33333 23345544443322 233 3445555555543221
Q ss_pred e-eeHH------HHHHH-----HHh--cCCHHHHHHHHHccCC-------C---Chhh-----------HHHHHHHHHhC
Q 046039 155 V-VAWN------SMIIG-----LAK--CGEIDESRRLFDKMVS-------R---NTVS-----------WNSMISGYVRN 199 (502)
Q Consensus 155 ~-~~~~------~l~~~-----~~~--~~~~~~a~~~~~~~~~-------~---~~~~-----------~~~l~~~~~~~ 199 (502)
. ..|+ .=++- +.. ..-+-.|...++++.. . +..+ |-..|..-...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 0 0111 00000 000 1111223333333210 0 1111 22233221111
Q ss_pred -----CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 200 -----VK--FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 200 -----~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
|+ ....--++++.... +.-.+..|----.-+...++-+.|........ +..+...-.+...|.-..+.
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~lse~yel~nd~ 349 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFLSEYYELVNDE 349 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeHHHHHhhcccH
Confidence 11 12222334443332 23333444333334445566666655544332 22222222233333333333
Q ss_pred HHHHHHHhcCC---------------------------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 046039 273 ERALQVFNTVP---------------------------------KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN-L 318 (502)
Q Consensus 273 ~~A~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 318 (502)
+....+|++.. ..=..+|...+....+....+.|..+|-+..+.| +
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 33333333221 0112267778888888888999999999999988 5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----PDAIIWG 394 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 394 (502)
.++...++.++..++ .|+...|..+|+.-... ++.++..-+..+..+.+.++-..|..+|+....+ .-..+|.
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~ 506 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYD 506 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHH
Confidence 677788888887664 57899999999987763 3334444456677778999999999999976543 2256888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
.++.--..-|+...+..+=+++.++-|....
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 8998888999999999999999888887543
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.39 E-value=0.054 Score=45.79 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNI--KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
.-.....+...|++.+|...|+.+...-. +--......++.++.+.|+++.|...++.+++.-
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33445566778888888888888876521 1223445566777778888888888888877764
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.18 Score=49.37 Aligned_cols=353 Identities=12% Similarity=0.079 Sum_probs=191.2
Q ss_pred HhcCCChHHHHHHHHHhHhc-------CCCCCCcccHH-----HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHH
Q 046039 62 FSQSSTPRNAILLFIDMLVT-------SPIQPQRLTYP-----SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTI 129 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~-------~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (502)
+.+..++++-..+.+.+.-. -|++.+..-|. .++.-+...+.+..|.++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 34555666665555544321 14444443333 3455556667788888777766332111 15677777
Q ss_pred HHHHHhCCC---hhHHHHHHhhcCCC-CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC--------ChhhHHHHHHHHH
Q 046039 130 IYMYANCGF---LSEARLMFDEVDTE-FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR--------NTVSWNSMISGYV 197 (502)
Q Consensus 130 ~~~~~~~g~---~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~ 197 (502)
...+.+..+ -+.+..+=+++..+ ....+|..+.......|+.+.|..+++.-... +..-+...+.-+.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 777776632 22233333334321 34567778888888889998888888764332 1222334444455
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 046039 198 RNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQ 277 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (502)
++|+.+-...++-.+.+. .+...+...+ .+...|..+|.+..+..-.. .+-..|-. ++...+..
T Consensus 558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q-~dn~~~~a 621 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ-DDNHQALA 621 (829)
T ss_pred hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-ccchhhhh
Confidence 556655555555554432 1111111111 13334444454444321110 01112222 22222222
Q ss_pred HHh--cC-----CCCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 278 VFN--TV-----PKKGLSCWNSMVFGLAMNGY----------ENEAIKLFSGLQS-SNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 278 ~~~--~~-----~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
.|. .. ...-..........+.+... ..+-+.+.+.+.. .|......+.+--+.-+...|+..
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 111 10 00111122233334443332 1122222333322 232333445555666677789999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
+|.++-.+++ -|+-..|-.-+.++...+++++-+++-+... ++..|.....+|.+.|+-++|.+.+-+.-.+
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 9988877664 3677777777888999999998888776655 3567888889999999999998887765331
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 420 DKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 420 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
.-...+|.+.|++.+|.++-
T Consensus 774 --------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 774 --------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred --------HHHHHHHHHhccHHHHHHHH
Confidence 25667899999999988753
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.19 E-value=0.011 Score=45.49 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=66.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC---GYVLMSNLYA 435 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~ 435 (502)
-.....+.|++++|.+.|+.+... | ....-..++.+|.+.+++++|...+++.++++|.++. ++...|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344456788999999998888754 2 3345667889999999999999999999999998775 4555565666
Q ss_pred hcCC---------------chHHHHHHHHhhhc
Q 046039 436 ASYQ---------------FEEAMEERLLMKEV 453 (502)
Q Consensus 436 ~~g~---------------~~~A~~~~~~~~~~ 453 (502)
++.. ..+|..-|+.+.+.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 6554 55666666666544
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.018 Score=49.97 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC-CC-CHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA---GLLEEAEKLIRSMPS-DP-DAIIW 393 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~-~~-~~~~~ 393 (502)
+-|...|..|..+|...|+++.|..-|....+.. ++++..+..+..++... .+..++..+|+++.. +| ++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3477899999999999999999999999988743 44566666666665533 246788899998875 34 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
..|...+...|++.+|...|+.|++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 88899999999999999999999998876554
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0063 Score=50.07 Aligned_cols=97 Identities=8% Similarity=0.114 Sum_probs=76.1
Q ss_pred HHHHHcc--CCCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046039 175 RRLFDKM--VSRNTVSWNSMISGYVR-----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG------------ 235 (502)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 235 (502)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444554 45677777777777764 4677888888899999999999999999998875421
Q ss_pred ----chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 236 ----AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 236 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999998866554
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0064 Score=54.79 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.++..+..+|.+.+++.+|++..++... ++++.....=+.+|...|+++.|+..|+++++++|+|..+...|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4567788899999999999999988764 36788888889999999999999999999999999999999999988777
Q ss_pred cCCchHH-HHHHHHhhhc
Q 046039 437 SYQFEEA-MEERLLMKEV 453 (502)
Q Consensus 437 ~g~~~~A-~~~~~~~~~~ 453 (502)
.....+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666555 5688888654
No 221
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.09 E-value=0.39 Score=48.26 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=68.9
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 300 NGYENEAIKLFSGLQSSN-LKPDY--ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
..+.+.|..++....... ..+.. .....+.......+..+++..+++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 445677777777764432 22222 22333333333332255666666654422 2244445555555567888888
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 377 AEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 377 A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+...+..|... -...-..=++.++...|+.++|...|+++.. + .++|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 88888777642 1222222356666667888888888888733 2 24555554
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.08 E-value=0.21 Score=45.04 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=115.9
Q ss_pred CCChhHHHHHHhhcCCCCCeee--HHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 136 CGFLSEARLMFDEVDTEFDVVA--WNSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
.|+++.|.+-|+.|...|.... ...|.-...+.|+.+.|.+.-+..-. | -...+...+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 4566666666665554333322 22223333445555555555544422 1 23345556666666666666666666
Q ss_pred HHHHCC-CCCCHHH--HHHHHHHH--h-ccCchHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCChHHHHHHHhcCC
Q 046039 211 EMQEQN-IKPSEFT--MVSLLNAC--A-KLGAIRQGEWIHNFLVTNCFELNTIV-VTAIIDMYCKCGCPERALQVFNTVP 283 (502)
Q Consensus 211 ~m~~~~-~~~~~~~--~~~ll~~~--~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (502)
.-+... +.++..- -..|+.+- . -..+...|...-.+..+. .|+..- .-.-..++.+.|+..++-.+++.+=
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 544322 2233211 11122111 1 112344444444444332 222111 1122345566666666666666554
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 046039 284 KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY 361 (502)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (502)
+..+..--..+-.+.+.|+ .++.-+++.... .++| +..+...+..+....|++..|..--+... ...|....|
T Consensus 291 K~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~ 365 (531)
T COG3898 291 KAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAY 365 (531)
T ss_pred hcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHH
Confidence 4333222222222333333 233333322211 1233 33555566666667777777766655554 345666666
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhCCCCC
Q 046039 362 SCMVDALG-RAGLLEEAEKLIRSMPSDP 388 (502)
Q Consensus 362 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 388 (502)
..|.+.-. ..||-.++..++-+....|
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 66666544 3477777777776665433
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.22 Score=44.92 Aligned_cols=276 Identities=15% Similarity=0.096 Sum_probs=154.5
Q ss_pred CCChhHHHHHHhhcCC--CCCeeeHHHHHH--HHHhcCCHHHHHHHHHccCC-CChh--hHHHHHHHHHhCCChHHHHHH
Q 046039 136 CGFLSEARLMFDEVDT--EFDVVAWNSMII--GLAKCGEIDESRRLFDKMVS-RNTV--SWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~--~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~ 208 (502)
.||-..|.++-.+..+ ..|......++. +-.-.|+.+.|.+-|+.|.. |... -...|.-...+.|..+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4566666665544332 233333333332 33447888888888888865 2211 123333344567788888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-CCCchhH--HHHHHHHHHh---cCChHHHHHHHhcC
Q 046039 209 FREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-FELNTIV--VTAIIDMYCK---CGCPERALQVFNTV 282 (502)
Q Consensus 209 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~---~g~~~~A~~~~~~~ 282 (502)
-+..-..- +--.......+...+..|+++.|+++.+.-.... +.++..- -..|+.+-.. ..+...|...-.+.
T Consensus 177 Ae~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 77765542 3345667777888888888888888887666543 2333221 1122222111 12344444444433
Q ss_pred CC--CCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-h
Q 046039 283 PK--KGLS-CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-I 358 (502)
Q Consensus 283 ~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 358 (502)
.+ ++.. .--.-..++.+.|+..++-.+++.+-+....|+.. .. ....+.|+. +..-++...+--.++|| .
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LL--YVRARSGDT--ALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HH--HHHhcCCCc--HHHHHHHHHHHHhcCccch
Confidence 33 2322 33344567788888888888888888765444432 21 123344442 22223333222233443 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKH-GNIEMAKQAAKQIIE 418 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 418 (502)
.....+..+-...|++..|..--+.... .|....|..|...-... |+-.++.+.+.+.++
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555566677777888777766555543 37777777666655444 888888888888776
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.001 Score=46.27 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
..+++.+...|...|++++|+..|++... .|+ ..++..++.++...|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34567777777788888887777766542 132 457788888888999999999998888763
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.0035 Score=49.85 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh-----cCCccCC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE-----VKIEKEP 459 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 459 (502)
....++..+...|++++|...+++++..+|-+..++..++.+|...|+..+|.++++++.+ .|+.|+|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 5566778888999999999999999999999999999999999999999999999988753 4666543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.0094 Score=51.00 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=42.0
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P-DAIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~ 407 (502)
+.|++..|.+-|...++.+.-.+ ....+..|..++...|++++|..+|..+... | -+..+.-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555554321100 1222333555555555555555555444321 1 2234444555555555555
Q ss_pred HHHHHHHHHHhcCCCCc
Q 046039 408 MAKQAAKQIIELDKNES 424 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~ 424 (502)
+|...|+++.+.-|+.+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 55555555555555544
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.0046 Score=50.86 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=78.5
Q ss_pred HHHHHhccC--CCCCcchHHHHHHHHhcC-----CChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhc----------
Q 046039 39 YAYLVFTQI--KKPNLFIWNTIIRGFSQS-----STPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQL---------- 101 (502)
Q Consensus 39 ~A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------- 101 (502)
.-...|+.. ...|-.+|..++..+.+. |..+-....+..|.+- |+.-|..+|+.|++.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 334566665 347888888888888643 6777778888888887 9999999999999987542
Q ss_pred ------CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 102 ------GLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 102 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1346689999999999999999999999999876654
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.87 E-value=0.24 Score=42.28 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++..|.+.|.+..|..-++++++.-|+.. ..+..+..+|...|..++|.+.-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 356778999999999999999999766644 456777788999999999988755553
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.59 Score=46.67 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=118.2
Q ss_pred HHHHhhhCCCCChhHHHHHhccCCCCCcch----HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHh
Q 046039 25 RILAFCTSPAGDINYAYLVFTQIKKPNLFI----WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ 100 (502)
Q Consensus 25 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 100 (502)
.-|... .+..-++.|..+-+.-.- +... .......+.+.|++++|..-|-+-... +.| ..++.-+..
T Consensus 339 ~kL~iL-~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDIL-FKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHH-HHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcC
Confidence 344444 455667777777665432 2222 223344567789999999888776632 333 355666777
Q ss_pred cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHc
Q 046039 101 LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 180 (502)
..+...--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+......-..-....+..+.+.+-.++|..+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 77778888889999998865 56666789999999999999999888766222233466777778888888888777666
Q ss_pred cCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
... +...... .+-..+++++|++++..+
T Consensus 489 ~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 544 3333333 344578899999998876
No 230
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.83 E-value=0.0028 Score=35.49 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.+|..++.+|...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999999863
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.80 E-value=0.52 Score=45.23 Aligned_cols=393 Identities=12% Similarity=0.110 Sum_probs=221.9
Q ss_pred HHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc-cHHHHHHHHHhcCCchhHHHHHHHHH
Q 046039 39 YAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL-TYPSLFKAYAQLGLARDGAQLHGRVV 115 (502)
Q Consensus 39 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 115 (502)
+-.+.++.... -+...|..+|.---.....+.+..++..++.+ -|... -|......=.+.|..+.+.++|++.+
T Consensus 30 ~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv 106 (577)
T KOG1258|consen 30 DSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGV 106 (577)
T ss_pred chhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555443 44556666665554555556677777777744 34433 34444444466777788888888777
Q ss_pred HhCCCCchhHHHHHHHHHH-hCCChhHHHHHHhhcCC-----CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhH
Q 046039 116 KQGLEFDQFIHNTIIYMYA-NCGFLSEARLMFDEVDT-----EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSW 189 (502)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (502)
.. ++.+...|......+. ..|+.+.....|+.... =.+...|...+..-...+++.....+++++++-....|
T Consensus 107 ~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~ 185 (577)
T KOG1258|consen 107 QA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL 185 (577)
T ss_pred Hh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh
Confidence 64 5666666665555443 34666666666666543 13455677777777777778888888877765433333
Q ss_pred HHHHHHHHh---C------CChHHHHHHHHHHH--------------------HCCCCCCHH--HHHHHHHHH-------
Q 046039 190 NSMISGYVR---N------VKFKEALELFREMQ--------------------EQNIKPSEF--TMVSLLNAC------- 231 (502)
Q Consensus 190 ~~l~~~~~~---~------~~~~~a~~~~~~m~--------------------~~~~~~~~~--~~~~ll~~~------- 231 (502)
+..-.-|.+ + ...+++.++-.... ..+-+.+.. ..+.+...+
T Consensus 186 ~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~ 265 (577)
T KOG1258|consen 186 NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY 265 (577)
T ss_pred HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence 333222211 1 11222222221111 111000000 011111111
Q ss_pred hccCchHHHHHHHHHHHHcC---C----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcC
Q 046039 232 AKLGAIRQGEWIHNFLVTNC---F----ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNG 301 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (502)
............++.-+..- + .++..++...+..-...|+.+.+.-.|+...-+- ...|-..+.-....|
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG 345 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC
Confidence 11111112222222222211 1 1245667777777888999999999998876542 235666666666668
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHhcCCHHHHH--
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI-KHYSCMVDALGRAGLLEEAE-- 378 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~-- 378 (502)
+.+-|..++....+-.++-.+.+-..-..-+...|++..|..+++.+... . |+. ..-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 88888877776665433323322222222345568999999999999874 3 553 22223344556888888888
Q ss_pred -HHHHhCCC-CCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 379 -KLIRSMPS-DPDAIIWGSLLS-----ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 379 -~~~~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+++..... +.+..+...+.. .+.-.++.+.|..++.++.+..|++..+|..+.......+
T Consensus 423 ~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 55544432 122223222222 2334678999999999999999999999998888766655
No 232
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.78 E-value=0.0046 Score=34.58 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
..|..++.++...|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999988875
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.72 E-value=0.17 Score=48.92 Aligned_cols=116 Identities=15% Similarity=0.031 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYS-CMVDALGRAGLLEEAEKLIRSMPSD----P--DAIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~ 407 (502)
....+.|.++++.+.+++ |+...|. .-.+.+...|++++|++.|++.... + ....+--++.++.-..+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 457889999999998753 5655554 3356677889999999999976541 2 3335556788889999999
Q ss_pred HHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCCc-------hHHHHHHHHhhhc
Q 046039 408 MAKQAAKQIIELDKNESC-GYVLMSNLYAASYQF-------EEAMEERLLMKEV 453 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~ 453 (502)
+|.+.|.++.+...-+.. .++..+.++...|+. ++|.++++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999987665444 445555667778988 8888888887643
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.11 Score=45.11 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=76.5
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGS---LLSACRKHGNIE 407 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 407 (502)
.....|++..|...|+..... .+-+...--.++.+|...|+.+.|..++..++.+-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667888888888877763 233345556677888888888888888888876532222222 233333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 408 MAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+... +++-...+|++...-..++..+...|+.++|.+.+=.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3222 23334568888888888888888888888888765555444
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.016 Score=53.70 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDA----IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
.+...++.+..+|.+.|++++|+..|++... +|+. ..|..+..+|...|+.++|++.+++++++.+. .+..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 3466778888888888888888888887654 4653 35888888888888888888888888886321 11111
Q ss_pred HH--HHHhcCCchHHHHHHHHhhhcCC
Q 046039 431 SN--LYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 431 ~~--~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.. .+....+..+..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 10 11122333455556666666554
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=96.63 E-value=0.045 Score=50.88 Aligned_cols=62 Identities=13% Similarity=-0.060 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|+.....++.+..-.++++.|...|+++..++|+.+..+...+.++.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444455555555555555555555555555555555555555555555553
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.036 Score=47.56 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD-------PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVL 429 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 429 (502)
.|+.-+.. .+.|++..|...|...... |+...| |+.++...|++++|..+|..+.+..|++ |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 55554443 4677788888888776543 333333 8888888888888888888888866554 456788
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 430 MSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
|+.+..+.|+.++|...++++.+.-+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 888888888888888888888766543
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.58 E-value=0.11 Score=39.01 Aligned_cols=141 Identities=10% Similarity=0.074 Sum_probs=86.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+.-.|..++..++..+...+ .+..-++.++--....-+-+-..++++.+-+-+.+.+-. ....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34567778888887777663 255566666655555556666666666665543333322 12334455554443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.......+..+..+|+-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++.++++++-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23344556677788999999999999988767778999999999999999999999999999999875
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=96.57 E-value=0.055 Score=42.77 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=35.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 046039 299 MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAE 378 (502)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (502)
..|++++|..+|+-+...++. +..-+..|..++-..+++++|+..|........ -|+..+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHHHHH
Confidence 344444444444444433221 233334444444444555555555444332211 11112222444444555555555
Q ss_pred HHHHhCCC
Q 046039 379 KLIRSMPS 386 (502)
Q Consensus 379 ~~~~~~~~ 386 (502)
.-|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 54444443
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.35 Score=42.15 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=101.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (502)
......|++.+|..+|+........ +...-..++.++...|+.+.|..++..+-.. .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456678888888888888776433 4456667888888999999999998887542 1111111122234455555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHH
Q 046039 375 EEAEKLIRSMPSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD--KNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 375 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.+...+-.+....| |...-..+...+...|+.+.|.+.+=.+++.+ -.+...-..|..++.-.|.-+.+..
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 55555555555566 66677778888999999999999888888744 5567778888888888886665544
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.48 E-value=0.72 Score=42.66 Aligned_cols=408 Identities=13% Similarity=0.078 Sum_probs=228.4
Q ss_pred HHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh
Q 046039 40 AYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ 117 (502)
Q Consensus 40 A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 117 (502)
-+++=+++.+ .|..+|-.|+.-+..++..++..+++++|.. ..+--...|..-+.+-...+++..+..+|.+.+..
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3366667765 5677999999999999999999999999986 34445567888888777788999999999999886
Q ss_pred CCCCchhHHHHHHHHHHhCCC---------hhHHHHHHhh-cC-CCCCeeeHHHHHHHHH---h------cCCHHHHHHH
Q 046039 118 GLEFDQFIHNTIIYMYANCGF---------LSEARLMFDE-VD-TEFDVVAWNSMIIGLA---K------CGEIDESRRL 177 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~-~~-~~~~~~~~~~l~~~~~---~------~~~~~~a~~~ 177 (502)
.+ +...|...+.--.+.+. +-+|.++.-. +. .+.+...|+..+..+- . ..+++...+.
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 44 46666666654444331 1122222211 11 1234445655544322 2 3344555566
Q ss_pred HHccCC-C---------ChhhHHHHHHHH-----Hh--CCChHHHHHHHHHHHH--CCC----CCCHHHHHHHHH-----
Q 046039 178 FDKMVS-R---------NTVSWNSMISGY-----VR--NVKFKEALELFREMQE--QNI----KPSEFTMVSLLN----- 229 (502)
Q Consensus 178 ~~~~~~-~---------~~~~~~~l~~~~-----~~--~~~~~~a~~~~~~m~~--~~~----~~~~~~~~~ll~----- 229 (502)
+.+++. | +-..|..=++-. .. .--+-.|...+++... .|+ +.+..+++-..+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666643 1 111111111111 10 1113455555655533 222 223333332211
Q ss_pred ------HHhcc-----Cc--hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHH
Q 046039 230 ------ACAKL-----GA--IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFG 296 (502)
Q Consensus 230 ------~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 296 (502)
--... |+ .....-++++.... +...+.+|----..+...++-+.|+.......+..+..-..+...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 00 11112222332222 122333333333344556777888887776554322211111111
Q ss_pred HHhc-------CChHHHHHHHHHHHH-------CCC---------------CCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 297 LAMN-------GYENEAIKLFSGLQS-------SNL---------------KPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 297 ~~~~-------g~~~~a~~~~~~~~~-------~~~---------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
|... |.++...+.+.+-.. .+. .--...|...+.+..+..-.+.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111 112222211111000 001 01124566677777777888999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C
Q 046039 348 MTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIW-GSLLSACRKHGNIEMAKQAAKQIIELDKN--E 423 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~ 423 (502)
..+..-+.+++..+++++..++ .|+..-|..+|+--... ||...| .-.+..+...++-+.|..+|+..++.-.+ -
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 9887336788888999888664 78899999999875543 666655 45667778899999999999987763222 2
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 424 SCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..+|..++.--..-|+...+..+-+.+.+.
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 457777877666778887777766666543
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.45 E-value=0.51 Score=40.69 Aligned_cols=220 Identities=18% Similarity=0.080 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 201 KFKEALELFREMQEQNIK-PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN-CFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 12344445555555556666555555555432 2233344444555555555566666666
Q ss_pred HhcCCCCCc---chHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 046039 279 FNTVPKKGL---SCWNSMVF-GLAMNGYENEAIKLFSGLQSSNL--KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY 352 (502)
Q Consensus 279 ~~~~~~~~~---~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (502)
+......+. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 196 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL- 196 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-
Confidence 655544211 12222223 56677777777777777754221 112233333333455667788888887777653
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 353 KIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 353 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+. ....+..+...+...++++.|...+...... |+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 -NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 233 3556666777777777778887777766543 33 344555555555666788888888888877776
No 243
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.41 E-value=0.97 Score=43.48 Aligned_cols=340 Identities=11% Similarity=0.006 Sum_probs=174.9
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHH
Q 046039 87 QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIG 164 (502)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 164 (502)
+...+..++.---.....+.+..+++.++.. .|.--..|......=.+.|..+.+.++|++... +.++..|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445556665444444556677777777754 344445566666667788999999999998765 4455666666654
Q ss_pred HH-hcCCHHHHHHHHHccCC------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----
Q 046039 165 LA-KCGEIDESRRLFDKMVS------RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK---- 233 (502)
Q Consensus 165 ~~-~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 233 (502)
+. ..|+.+...+.|+.... .+...|...+..-..++++.....+++..++....-=...|.........
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 44 46777778888887744 24556888888888889999999999998864211111111111111111
Q ss_pred -cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCCCCcc---hHHHH-------HHHHHhcC
Q 046039 234 -LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG-CPERALQVFNTVPKKGLS---CWNSM-------VFGLAMNG 301 (502)
Q Consensus 234 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~---~~~~l-------~~~~~~~g 301 (502)
....+.+.++-....... .-...+ ..+.-....+....+... ..+.+ -..+...-
T Consensus 203 ~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred hhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 112222222221111100 000000 011111111111111100 00011 11111222
Q ss_pred ChHHHHHHHHHHHHCC---CC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 046039 302 YENEAIKLFSGLQSSN---LK----PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~---~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (502)
........|+.-+... ++ ++..+|...+.--...|+.+...-+|+...- .+..-...|-..+.-....|+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCch
Confidence 2223333333333221 11 2335566666666667777777777776643 2222334444445545555777
Q ss_pred HHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 375 EEAEKLIRSMPS-----DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 375 ~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
+-|..++..... .|....+.+. .+-..|+++.|..++++..+--|....+-..-+....+.|..+.+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 777766655432 1222222222 2334567777777777777644766666556666666777777766
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.39 E-value=0.055 Score=41.24 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 334 (502)
|..++.+++.++++.|+.+....+++..=.-++.. -...+. --......|+..++.+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 34567777778888888877777776543221110 000000 11223467899999999999999
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
.|++..|.++++.+.+.++++.+..+|..|+.-..
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998888888888886443
No 245
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=2.5 Score=47.73 Aligned_cols=312 Identities=11% Similarity=0.039 Sum_probs=178.9
Q ss_pred HHHHHHHhCCChhHHHHHHhhcCC----CC-CeeeHHHHHHHHHhcCCHHHHHHHHHc-cCCCChhhHHHHHHHHHhCCC
Q 046039 128 TIIYMYANCGFLSEARLMFDEVDT----EF-DVVAWNSMIIGLAKCGEIDESRRLFDK-MVSRNTVSWNSMISGYVRNVK 201 (502)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 201 (502)
.+..+-.+++.+.+|...++.-.. .. ....+..+...|+..++++....+... ...++ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 445566678889999988887311 11 222344455589999999888777763 33332 2334556677899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 202 FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
++.|...|+.+.+.+ ++...+++-++......|.++......+-.....-+.....++.=+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999999876 556788888888888888888877755555443322122223333455578888888887776
Q ss_pred CCCCCcchHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh---------
Q 046039 282 VPKKGLSCWNSM--VFGLAMNG--YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLM--------- 348 (502)
Q Consensus 282 ~~~~~~~~~~~l--~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------- 348 (502)
..+...|... +....+.. +.-.-.+..+.+++.-+.| +.+|...|.+..+.++.-.+
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 33333222 1111112333333221111 11222222222221111111
Q ss_pred -hhhcCCCCCh------hHHHHHH---HHHHhcCCHHHHHH-HHHh--CC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 349 -TETYKIKPSI------KHYSCMV---DALGRAGLLEEAEK-LIRS--MP---SDPDAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 349 -~~~~~~~~~~------~~~~~l~---~~~~~~g~~~~A~~-~~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
....+..++. ..|..-+ ..+.+...+=-|.+ .+.. |. ...-..+|..........|+++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0111222221 1121111 11112111111111 1111 11 113456899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+-.+.+..+ +.++.-.+..++..|+...|+.++++-.+.+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 988888774 556788888999999999999999998876553
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.36 E-value=0.12 Score=39.88 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=58.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLK--PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA 371 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (502)
.....+.|++++|.+.|+.+...-+. -....-..++.++.+.++++.|...+++.++.+...|++ -|...+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 34445566666666666666654211 122344555566666666666666666666554444432 222333333322
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 372 GLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
...+..+.-+- ..+.| .+....|..-|+++++..|++..
T Consensus 96 ~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 22221111111 11111 12356888899999999998764
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.34 E-value=0.59 Score=40.25 Aligned_cols=219 Identities=18% Similarity=0.108 Sum_probs=158.8
Q ss_pred CchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFE-LNTIVVTAIIDMYCKCGCPERALQVFNTVPK-----KGLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
+....+...+......... ............+...+++..+...+..... .....+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555554322 1356677778888899999998888877653 234467777778888889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 309 LFSGLQSSNLKPDYISFIAVLT-ACNHSGKVNQAKDYFTLMTETYKI--KPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
.+.........+. ........ ++...|+++.+...+...... .. ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999987644432 22222223 688899999999999998542 21 1233444444555678899999999998876
Q ss_pred CC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 386 SD-PD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 386 ~~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.. ++ ...+..+...+...++++.|...+..+....|.....+..++..+...|..+++...+........
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 53 33 577888999999999999999999999999998666777777777777889999988888776543
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.015 Score=46.96 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=57.2
Q ss_pred HHhcCCHHHHHHHHHhCCCC-C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-P------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
+...|++++|..-|..+... | ....|..-..++.+.+.++.|+.-..++++++|....+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666665554321 1 1224455556667777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHhhhcCC
Q 046039 441 EEAMEERLLMKEVKI 455 (502)
Q Consensus 441 ~~A~~~~~~~~~~~~ 455 (502)
++|++-++.+.+..+
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 777777777765543
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.059 Score=42.79 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVVT 260 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 260 (502)
+...++..+...|++++|..+++.+.... |.+...|..+|.++...|+...|..+|+.+.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34456666777888888888888888775 66788888888888888888888888877653 47777665543
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.21 E-value=0.34 Score=43.30 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-----CCCchhH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQ-NIKP---SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-----FELNTIV 258 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 258 (502)
+|..+.+++-+..++.+++.+-+.-... |..| .......+..++...+.++++.+.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555554443322 1111 11233345556666667777777766655421 1123455
Q ss_pred HHHHHHHHHhcCChHHHHHHHhc
Q 046039 259 VTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
+..|...|.+..++++|.-+..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHh
Confidence 66677777777777766554443
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.19 E-value=0.7 Score=39.57 Aligned_cols=180 Identities=15% Similarity=0.045 Sum_probs=101.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCC-cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQ-RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN 135 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (502)
.-+....+.|++++|.+.|+.+..+....|= ..+...++.++-+.++++.|+...++..+.-+.....-|...|.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 3344456789999999999999876333332 224455566677889999999999998886544344455555555553
Q ss_pred C-------CChhHHHHHHhhcC---C-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHH
Q 046039 136 C-------GFLSEARLMFDEVD---T-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKE 204 (502)
Q Consensus 136 ~-------g~~~~a~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (502)
. .|...+.+.|..+. . =||.. -...|..-...+...=...=..+.+.|.+.|.+-.
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 2 22223333333222 1 01111 00111111100000000111245677888888888
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 205 ALELFREMQEQNIKPS---EFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 205 a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
|..-++.|++. .+-+ ...+-.+..+|...|-.++|...-.-+...
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888876 2333 234555667777788777777766555544
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.17 E-value=1.1 Score=41.72 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=82.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP---DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHY 361 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 361 (502)
..+|..++..+.+.|+++.|...+.++...+..+ .+.....-+......|+..+|+..++..... .+... ....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 4467777888888888888888888877643211 3344444556666778888888888777662 11111 1111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 362 SCMVDALGRAGLLEEAEKL-IRSMPSDPDAIIWGSLLSACRKH------GNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
..+...+.. ..+..... ........-...+..++..+... ++.+++...|..+.+..|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000001122344444444444 7889999999999999999888888888776
Q ss_pred Hhc
Q 046039 435 AAS 437 (502)
Q Consensus 435 ~~~ 437 (502)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.069 Score=46.97 Aligned_cols=161 Identities=17% Similarity=0.094 Sum_probs=111.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH----HHHHHHhcC
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSC----MVDALGRAG 372 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g 372 (502)
...+|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|.. +.-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888888888888876 445777777777888888998888888888875 33455544433 334455889
Q ss_pred CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHH
Q 046039 373 LLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN----ESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
-+++|++.-++..+- .|...-.++...+...|++.++.++..+--..=.. -..-|...+.++...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999988887642 45555667777788889999998887765431111 112344555567778899999999
Q ss_pred HHHhhhcCCccCCc
Q 046039 447 RLLMKEVKIEKEPG 460 (502)
Q Consensus 447 ~~~~~~~~~~~~~~ 460 (502)
|+.=.-...+++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87765454544433
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.11 E-value=0.066 Score=40.03 Aligned_cols=90 Identities=21% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc---chHHHHHHHHHhcCC
Q 046039 366 DALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK-NES---CGYVLMSNLYAASYQ 439 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~---~~~~~l~~~~~~~g~ 439 (502)
-++...|+++.|++.|.+... ...+..|+.-..++.-+|+.++|+.-+++++++.. ... ..+...+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345677888888888877653 23566788888888888888888888888887543 322 246666777888888
Q ss_pred chHHHHHHHHhhhcCC
Q 046039 440 FEEAMEERLLMKEVKI 455 (502)
Q Consensus 440 ~~~A~~~~~~~~~~~~ 455 (502)
-+.|..-|...-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888887777766654
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.08 E-value=0.012 Score=35.19 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 424 SCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
|..+..++.+|.+.|++++|+++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999986543
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.46 Score=40.10 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (502)
|..-..+|...+++++|...+.+..+ +...|...|.. ...++.|.-+.+++.+. +--+..|+.-...|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 44445566667777777776666654 22333322221 12345555566665542 223445566666777
Q ss_pred hCCChhHHHHHHhh
Q 046039 135 NCGFLSEARLMFDE 148 (502)
Q Consensus 135 ~~g~~~~a~~~~~~ 148 (502)
.+|..+.|-..+++
T Consensus 103 E~GspdtAAmaleK 116 (308)
T KOG1585|consen 103 ECGSPDTAAMALEK 116 (308)
T ss_pred HhCCcchHHHHHHH
Confidence 77777666655554
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.98 E-value=0.57 Score=36.76 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHH
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEID 172 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (502)
.++..+...+.+.....+++.+...+ ..++..++.++..|++.+ ..+....++. ..+.......++.|.+.+.++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHH
Confidence 33444444444444444444444443 234444444444444332 2222223221 122233333444444444444
Q ss_pred HHHHHHHcc
Q 046039 173 ESRRLFDKM 181 (502)
Q Consensus 173 ~a~~~~~~~ 181 (502)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 554444443
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.92 E-value=0.063 Score=40.94 Aligned_cols=52 Identities=8% Similarity=0.078 Sum_probs=31.3
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHH-hCCCCchhHHHHHHHHHH
Q 046039 83 PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK-QGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 134 (502)
...|+..+..+++.+++..|++..|+++++...+ .+++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666544 345555566666665433
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.82 E-value=0.72 Score=38.24 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.||-+.--+...|+++.|.+.|+...+.++.-+-...+.-+ ++.--|++..|.+-+...-+...-.|-...|-.+.
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~--- 176 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN--- 176 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---
Confidence 55555555566666666666666666543322222222111 22334666666655555443212222222222111
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCch
Q 046039 369 GRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-------SCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~ 441 (502)
.+.-++.+|..-+.+--...|..-|...+..+.- |+.. ....++++.+...++ ..+|..|+.-+...|+.+
T Consensus 177 E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~ 254 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLD 254 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHH
Confidence 1233455555443222222333333322222211 1111 122333333322222 235666777777777777
Q ss_pred HHHHHHHHhhhcCC
Q 046039 442 EAMEERLLMKEVKI 455 (502)
Q Consensus 442 ~A~~~~~~~~~~~~ 455 (502)
+|..+|+-....++
T Consensus 255 ~A~~LfKLaiannV 268 (297)
T COG4785 255 EATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHhH
Confidence 77777776665444
No 260
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.80 E-value=0.021 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+|..++..|...|++++|.+.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35777888888888899999998888888875
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.77 E-value=0.44 Score=45.45 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=79.6
Q ss_pred HhcCCChHHHHHHHH--HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 046039 62 FSQSSTPRNAILLFI--DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFL 139 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~--~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (502)
..-.++++++.+... .+.. .++ ....+.++..+-+.|..+.|+++..+- . .-.....+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 344566776655554 2221 122 223566666666777777776554322 1 233455667777
Q ss_pred hHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 046039 140 SEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKP 219 (502)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 219 (502)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.++..++.+.....| .
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~- 404 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG-D- 404 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc-C-
Confidence 77777665543 44567777777777777777777776653 35556666666777666666666666555 1
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHH
Q 046039 220 SEFTMVSLLNACAKLGAIRQGEWIH 244 (502)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~ 244 (502)
++....++...|++++..+++
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHH
Confidence 333344444456666555544
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=95.75 E-value=0.67 Score=43.43 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 302 YENEAIKLFSGLQS-SNLKPDY-ISFIAVLTACNH---------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 302 ~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..+.|+.+|.+... +...|+. ..|..+..++.. ..+..+|.+.-+...+. -+-|+.....+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 34577888888872 2244543 344444443322 23455666777766653 24456666677777778
Q ss_pred cCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCCchHHHHHH
Q 046039 371 AGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL-YAASYQFEEAMEER 447 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~ 447 (502)
.++++.|..+|++... .|+ ..+|......+.-.|+.++|.+.++++++++|.....-..-.++ ..-....++|++++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 8889999999998865 464 55777778888889999999999999999999866543333323 23344577777765
Q ss_pred H
Q 046039 448 L 448 (502)
Q Consensus 448 ~ 448 (502)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.74 E-value=1.6 Score=40.17 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=32.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 194 SGYVRNVKFKEALELFREMQEQN---IKPSEFTMVSLLNACAK---LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|..++..+......+++.++..+++.|
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34555555555555555554331 11111112222333334 455555555555544444445555555555444
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.62 E-value=0.82 Score=35.86 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..++..+...+.......+++.+...+. .+....+.++..|++. +.......++. . .+.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 4455555556666677777776666553 4555666666666654 23344444432 1 112222335566666
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 371 AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKH-GNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
.+.++++..++.++.. +...+..+... ++++.|.+++++ +.++..|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 6667777777766652 22233333333 667777666664 23444555555443
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.3 Score=37.60 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcchHH
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-------DPDA-IIWGSLLSACRKHGNIEMAKQAAKQIIE----LDKNESCGYV 428 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~ 428 (502)
+....+.+.+..++++|-..+.+-.. -++. ..+...+-.+.-..++..|..+++..-+ ..|++.....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33344555566666665554443321 1222 2344455555666677777777777554 3355555666
Q ss_pred HHHHHHHhcCCchHHHHH
Q 046039 429 LMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~ 446 (502)
.|..+ ...|+.+++..+
T Consensus 233 nLL~a-yd~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTA-YDEGDIEEIKKV 249 (308)
T ss_pred HHHHH-hccCCHHHHHHH
Confidence 66643 345666665554
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.54 E-value=0.59 Score=44.59 Aligned_cols=160 Identities=10% Similarity=0.084 Sum_probs=105.1
Q ss_pred HHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHH
Q 046039 96 KAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESR 175 (502)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 175 (502)
+...-.++++.+.++...-.-. +..+....+.++..+.+.|-.+.|+++-..- ..-.....+.|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP---------DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H---------HHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh---------HHHhHHHHhcCCHHHHH
Confidence 4455678888877776521111 1123556788999999999999999885431 23456678899999999
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN 255 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (502)
++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+.-.++.+.....| .
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-- 404 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-- 404 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C--
Confidence 9887765 667999999999999999999999987642 4566667778888888888887777665 2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
++....++.-.|+.++..+++.+.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233344455567777777766553
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.52 E-value=0.23 Score=44.32 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=113.6
Q ss_pred HHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHh
Q 046039 196 YVRNVKFKEALELFREMQEQ--NIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF-----ELNTIVVTAIIDMYCK 268 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 268 (502)
+..+.+.++|+..+.+-+.. +...-..++..+..+.+..|.++++...--..++.-. ..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777787777766543 1112234566667777777777766543322111100 0112334445555555
Q ss_pred cCChHHHHHHHhcCCC--------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcC
Q 046039 269 CGCPERALQVFNTVPK--------KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN-----LKPDYISFIAVLTACNHS 335 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~ 335 (502)
.-++.+++.+-+.-.. ........+..++...+.++++++.|+...+-- ....-..+..+-..+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555544332211 112234445566666677777777776665421 111224566666666667
Q ss_pred CCHHHHHHHHHHhhh---hcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTE---TYKIKPSIKHYS-----CMVDALGRAGLLEEAEKLIRSMPS-------DP-DAIIWGSLLSA 399 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~ 399 (502)
.++++|.-+.....+ ..++..-...|. .+.-++...|.+.+|.+..++..+ ++ -......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777666554322 222222222222 233445556666666555544321 11 22344556667
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 046039 400 CRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~ 418 (502)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777777777777777655
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.50 E-value=0.057 Score=40.38 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
-..++...|+.+.|++.|.+++.+-|.++..|+..+.++.-+|+.++|+.-+++..+.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999999999988777653
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=0.33 Score=38.52 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=48.2
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHhcCCCHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMV-----FGLAMNGYENEAIKLFSGLQSSNLKPDYI-SFIAVL--TACNHSGKVN 339 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~--~~~~~~~~~~ 339 (502)
+.+..++|+.-|..+.+.+...|..|. ....+.|+...|+..|.+.-.....|... -...|= -.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 445555555555555554443333322 22344555555555555554433223221 111111 1123344444
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
....-.+-+... +.+.....-..|..+-.+.|++.+|.++|..+.
T Consensus 150 dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444444443322 222222222334444444555555555554443
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.42 E-value=0.033 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777543
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.38 E-value=2.5 Score=39.96 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
+..+..+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555432211 12233444555555555555555555544
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.28 E-value=0.92 Score=34.30 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=78.8
Q ss_pred HhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeee---HHHHHHHHHhcCCHHHHH
Q 046039 99 AQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA---WNSMIIGLAKCGEIDESR 175 (502)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~ 175 (502)
.-.|..++..++..+..... +..-+|.++--....-+-+-..+.++.+.+-.|... .-.++.+|+..+.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~----- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK----- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc-----
Confidence 44577777777777776653 444455555555555555556666665543222221 1233333333332
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
+....+..+.....+|.-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 85 ---------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ---------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -----------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677788888888888888887644 777888888888888888888888888888887753
No 273
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=3.6 Score=40.93 Aligned_cols=323 Identities=15% Similarity=0.068 Sum_probs=163.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCC--chhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGL--ARDGAQLHGRVVKQGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (502)
.+|.-+...+.+..|+++.+.+... -.. ....|.....-+.+..+ -+.+++.+++=.+.-. .....|..+.....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p-~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLP-ESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCc-ccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 4566777788899999998887542 111 14455555555554432 2233333333333212 34455777777777
Q ss_pred hCCChhHHHHHHhhcCCC-------CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHhCCChHHHH
Q 046039 135 NCGFLSEARLMFDEVDTE-------FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVRNVKFKEAL 206 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 206 (502)
..|+.+.|..+++.=... -+..-+..-+.-+.+.|+.+....++-.+... +...+.. -..+...|.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~------~l~~~p~a~ 592 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM------TLRNQPLAL 592 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH------HHHhchhhh
Confidence 899999999988753321 12223344445555566666655555444221 1111111 122334455
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHH--HHHH----HcCCCCchhHHHHHHHHHHhcCChHHH-----
Q 046039 207 ELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH--NFLV----TNCFELNTIVVTAIIDMYCKCGCPERA----- 275 (502)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A----- 275 (502)
.+|.+..+..-.. + +- .+.+.++-..+...+ +... ..+..|+ .......+.+.....-.
T Consensus 593 ~lY~~~~r~~~~~---~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA---T---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHHHHHhhchh---h---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHH
Confidence 5555543321011 0 11 111222211111111 1100 0111222 22223333333221111
Q ss_pred -----HHHHhcCCCC-C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 276 -----LQVFNTVPKK-G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 276 -----~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
+.+.+.+... + -.+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1111111111 1 1144555566677777777777766654 467777777777788878877766655
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
+... ++.-|.-++.+|.+.|+.++|.+++-+....+ -...+|.+.|++.+|.+..-+
T Consensus 739 kskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 4432 23445557778888888888888877765332 355667777777777665433
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.20 E-value=2.3 Score=41.27 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQN-IKPSEF-----TMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIV 258 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 258 (502)
...+++...=.|+-+.+++.+.+..+.+ +.-... .|...+..++. ..+.+.+.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3444455555677777777776655432 111111 12222222222 335566666666666652 33333
Q ss_pred H-HHHHHHHHhcCChHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 259 V-TAIIDMYCKCGCPERALQVFNTVPKKG-------LSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 259 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
| -.-.+.+...|+.++|++.|+...... ...+-.++-.+.-..++++|...|..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3 223445556667777777776544211 113333444455556666666666666553
No 275
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=1.3 Score=37.34 Aligned_cols=64 Identities=6% Similarity=-0.061 Sum_probs=37.2
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCCC-----CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 363 CMVDALGRA-GLLEEAEKLIRSMPS-----DPDAI---IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 363 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+...|... .++++|+..|+...+ +.+.. .+.-+...-...+++.+|+.+|++......+++..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 344445433 566666666665532 11111 22233333456789999999999998766555543
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.73 Score=40.86 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=117.3
Q ss_pred HhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHhcCCCHH
Q 046039 267 CKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI--SF--IAVLTACNHSGKVN 339 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~--~~l~~~~~~~~~~~ 339 (502)
...|+..+|...++++.+. |..++..--.+|...|+.+.-...+++.... ..|+.. +| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888778877764 5557777788899999999999999988865 233432 22 33444566789999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---P---DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
+|++.-++..+. .+.|.-....+...+.-.|+..++.+++.+-... . -..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999998887752 2345556667777888899999999998876643 1 1122334445667779999999999
Q ss_pred HHHH--hcCCCCcchHH---HHHHHHHhcCCchHHH
Q 046039 414 KQII--ELDKNESCGYV---LMSNLYAASYQFEEAM 444 (502)
Q Consensus 414 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~A~ 444 (502)
++-+ ++..++..... -+--+..+...+.+-.
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld 306 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD 306 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence 8754 35666663322 2233444444444433
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.83 E-value=1.7 Score=34.94 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=17.7
Q ss_pred HHHHhHhcCCCCCCcccHHHHHHHHHhcCCchh
Q 046039 74 LFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARD 106 (502)
Q Consensus 74 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 106 (502)
.++.+.+. +++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~-~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQH-NIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33334444 566666666666666666665443
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.76 E-value=0.19 Score=44.00 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666666666666666665543
No 279
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.72 E-value=4 Score=38.75 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
....+++..+..+..+.-+..+..+|+..| .+...|..++.+|... ..+.-..+++++.+..+. |...-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 344455666666666666666666666653 3555666666666665 455556666666665432 333334444444
Q ss_pred HhcCChHHHHHHHhcC
Q 046039 267 CKCGCPERALQVFNTV 282 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~ 282 (502)
-+ ++.+.+..+|.++
T Consensus 143 Ek-ik~sk~a~~f~Ka 157 (711)
T COG1747 143 EK-IKKSKAAEFFGKA 157 (711)
T ss_pred HH-hchhhHHHHHHHH
Confidence 33 5555555555543
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.68 E-value=1.9 Score=40.74 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPSD-PD---AIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.|..++.+.|+.++|++.++++.+. |. ..+...|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4455555666666666666655432 21 2244556666666666666666666543
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=5.7 Score=40.15 Aligned_cols=176 Identities=15% Similarity=0.070 Sum_probs=117.6
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
....-+..+.+...++-|+.+-+.-..+.. .........+.+.|++++|...|-+.... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 445566677777777777777766433211 12334455667889999999988776543 2333 23445556
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHH
Q 046039 234 LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS--CWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
......-..+++.+.+.|+. +......|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 66677777888888888854 55666778999999999999999998877 3332 35556677777777777766654
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 312 GLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
+... .......++ ...+++++|.++++.+
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4332 333344443 4567899999998766
No 282
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.47 Score=40.92 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHccC--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-------------
Q 046039 176 RLFDKMV--SRNTVSWNSMISGYVR-----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG------------- 235 (502)
Q Consensus 176 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------- 235 (502)
..|.... ++|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 4566666666665543 3556667777888888888889999988888765432
Q ss_pred ---chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 236 ---AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 236 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+-+-+..++++|...|+-||..+-..|++++.+.+-.
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877653
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.35 E-value=0.078 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.20 E-value=0.19 Score=44.47 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=70.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGN 405 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 405 (502)
-..-|.+.|.+++|+..|...+. -.+.++.++..-..+|.+..++..|+.-...+..- .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34567888888899888887764 22337777777778888888888777766555421 223356666666667788
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
..+|.+-++.++++.|++...--.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHH
Confidence 8888888888888888865544433
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.18 E-value=0.11 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
-.++.++.+.|++++|.+.|+++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665
No 286
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.15 E-value=5.3 Score=37.84 Aligned_cols=240 Identities=10% Similarity=0.019 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------chHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHhcCChH-
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLG------AIRQGEWIHNFLVTNC-F-ELNTIVVTAIIDMYCKCGCPE- 273 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~- 273 (502)
+....+|++..+. -|+...+...|..|...- .+.....+++.....+ . +.....|..+...+.......
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3445666666553 455566666666554322 3344445555554433 2 223455555555555555433
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-HH--HHHHHHHHh
Q 046039 274 RALQVFNTVPKKGLSCWNSMVFGLAMN-GYENEAI-KLFSGLQSSNLKPDYISFIAVLTACNHSGK-VN--QAKDYFTLM 348 (502)
Q Consensus 274 ~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~--~a~~~~~~~ 348 (502)
.|..+.....+.+...|..-+...... .+++-.. +++......-..+-...+.... .|+ .+ .-..++..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 344444455555666665555544422 2332222 2333333322222333333332 122 11 112223333
Q ss_pred hhhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 046039 349 TETYKIKPSIKH-YSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACR--KHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 349 ~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.. ...|+..+ -+.+++-+.+.|-..+|...+..+..- |+...|..++..-. .+-+...+.++|+.++.-...+
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 33 22344333 356677777888899999998887653 46667776665432 2334778888898888755577
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 424 SCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+..|......-...|+.+.+-.++.++.
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 8788777766667788777766655443
No 287
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.12 E-value=3 Score=34.80 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-hHHHHH--HHHHhcCChHHHHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS-CWNSMV--FGLAMNGYENEAIKLFS 311 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~a~~~~~ 311 (502)
|-+.-|.--|.+..... +.-+.+||-|.--+...|+++.|.+.|+...+.|+. -|..+= -++---|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 34444444444444433 334778888888888999999999999988887665 333322 23344688888888777
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHH-HHhhhhcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHhCCCC-
Q 046039 312 GLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYF-TLMTETYKIKPSIKHYSCM-VDALGRAGLLEEAEKLIRSMPSD- 387 (502)
Q Consensus 312 ~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~- 387 (502)
+.-+.+.. |-...|..+.. ..-++.+|..-+ ++... .+..-|... +..|.-.=..+.+.+-...-..+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 76665432 22233333322 333566665443 33332 233344333 33333222223333222222211
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 388 -----PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 388 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.-..+|--|+.-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 224577888999999999999999999988754
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.02 E-value=0.45 Score=37.57 Aligned_cols=83 Identities=13% Similarity=0.004 Sum_probs=59.7
Q ss_pred hHHHHHHHH---HHhcCCHHHHHHHHHhCCC-CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 359 KHYSCMVDA---LGRAGLLEEAEKLIRSMPS-DPDAIIW-GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 359 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+.+.|+.. -.+.++.+++..++..+.. .|..... ..-+..+...|++.+|+.+|+.+.+..|..+..-..++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344555544 3477889999998887753 3543322 2344567889999999999999888888888888888888
Q ss_pred HHhcCCch
Q 046039 434 YAASYQFE 441 (502)
Q Consensus 434 ~~~~g~~~ 441 (502)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 87777754
No 289
>PRK09687 putative lyase; Provisional
Probab=94.00 E-value=4.3 Score=36.24 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
..+.++...|.. +|+..+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444455543 45555555554444
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=7.6 Score=38.97 Aligned_cols=147 Identities=10% Similarity=0.134 Sum_probs=76.5
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCC---cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQ---RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN 135 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (502)
++-+.+.+.+++|++.-+... |..|. .......|..+...|+++.|-...-.|.. -+..-|...+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 455666777777777766654 33442 23455566666677777777766666643 244555555555555
Q ss_pred CCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccC-------------C-------CChhhHHHHHHH
Q 046039 136 CGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMV-------------S-------RNTVSWNSMISG 195 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~-------~~~~~~~~l~~~ 195 (502)
.++......++-.-....++..|..++..+.. .+...-.+....-. + .+...-..|+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 55544433332222212344556666655555 22222111111110 0 122233346677
Q ss_pred HHhCCChHHHHHHHHHHH
Q 046039 196 YVRNVKFKEALELFREMQ 213 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~ 213 (502)
|...+++..|+..+-.+.
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 777777777777765554
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.92 E-value=0.43 Score=36.96 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=54.0
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 359 KHYSCMVDAL---GRAGLLEEAEKLIRSMPS-DPDAI-IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 359 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
...+.|+... ...++++++..+++.+.. .|+.. .-..-+..+...|++.+|..+|+++.+-.|..+..-..++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444444432 357888888888877643 23322 112234457788888888888888887777777777777777
Q ss_pred HHhcCCch
Q 046039 434 YAASYQFE 441 (502)
Q Consensus 434 ~~~~g~~~ 441 (502)
+.-.|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 77777644
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=3.1 Score=34.11 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=59.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSI----KHYSCMVDALGRAGLLEEAEKLIRSMPSDP-DAIIWGSLLSACRK 402 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 402 (502)
+...+...|++++|+..++..... +.|. ..--.|.+.....|.+++|...++....+. .......-+..+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 344566777888888777766532 1221 112245566777888888888888776431 22334455677888
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 046039 403 HGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~ 422 (502)
.|+-++|...|+++++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888877644
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.77 E-value=0.093 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.++..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999876543
No 294
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.74 E-value=0.18 Score=29.45 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.+++.|+..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777765
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.74 E-value=0.2 Score=39.59 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHH
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEID 172 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (502)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ......++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 3466666777888888888888876656667788888888888877777777776332 244456666677777777
Q ss_pred HHHHHHHcc
Q 046039 173 ESRRLFDKM 181 (502)
Q Consensus 173 ~a~~~~~~~ 181 (502)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 776666665
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.67 E-value=4.1 Score=37.91 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK----NESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
....+|..++..+.+.|+++.|...+.++...++ ..+.+....+..++..|+..+|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4556888999999999999999999999987552 2466777788899999999999999888877433
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=2.3 Score=34.00 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH--HHHHhcCC
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV--DALGRAGL 373 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~ 373 (502)
+++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+|.-..-...|= ..+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677777777777777765442221 112223335566777777777777764422211111111111 22345666
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 374 LEEAEKLIRSMPSDPD---AIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
++......+.+..+.+ ...-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7776666666554322 22344566666677777777777777655
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.52 E-value=12 Score=39.71 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=12.6
Q ss_pred HHHHHHHhCC--ChHHHHHHHHHHH
Q 046039 191 SMISGYVRNV--KFKEALELFREMQ 213 (502)
Q Consensus 191 ~l~~~~~~~~--~~~~a~~~~~~m~ 213 (502)
.++.+|.+.+ ..+.++....+..
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4556666655 4555555555544
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.32 E-value=0.41 Score=29.86 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
-.+..++.+.|++++|.+..+.+++.+|+|..+.....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 34677889999999999999999999999987655443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.28 E-value=0.13 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.+|..++.+|...|++++|+..+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999886543
No 301
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.25 E-value=0.98 Score=39.07 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=75.2
Q ss_pred HHHHhcCC--CCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-------------
Q 046039 276 LQVFNTVP--KKGLSCWNSMVFGLAM-----NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS------------- 335 (502)
Q Consensus 276 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------------- 335 (502)
+..|..+. +.+-.+|.+.+..+.. .+.++=....++.|.+.|+.-|..+|..|+..+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 4455677777766654 356666677788899999988999999998876543
Q ss_pred ---CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHH
Q 046039 336 ---GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL-EEAEKLI 381 (502)
Q Consensus 336 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 381 (502)
.+-+-++.++++|... |+-||..+-..|+.++.+.+-. .+..+++
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 2335578899999776 9999999999999999887753 3334443
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.03 E-value=1.3 Score=31.76 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
+..+-++.+...++.|++......+++|.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556667777778899999999999999999999999999999987544 33336766664
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.02 E-value=1.9 Score=35.43 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH---
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSC--- 363 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 363 (502)
.+..++..|.+.|+.+.|++.|.++.+....+.. ..+..+++.+...+++..+...+.+......-..+...-+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5566677777777777777777777775444433 34566777777778888877777766543111111111111
Q ss_pred -HHHHHHhcCCHHHHHHHHHhCCC
Q 046039 364 -MVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 364 -l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
-.-.+...+++.+|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11223456788888887766653
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.01 E-value=0.69 Score=32.70 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
++.+-++.+...++.|++......+++|.+.+++..|.++++.++.+.+ .+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556667777778899999999999999999999999999998876433 24446665554
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=2.7 Score=40.63 Aligned_cols=151 Identities=24% Similarity=0.139 Sum_probs=98.3
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
...|+++.|..++..+.+. ..+.++.-+.++|-.++|+++ .+|+.--. ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHH
Confidence 3467777777777666632 344555666667777776654 23332211 12336688888877765
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+.. +..-|..|.++..+.|++..|.+-|.+.. -|..|+-.+...|+.+....+-..+.+....|..+
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF 728 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH
Confidence 542 45678888888888899999988888776 36667777777777776666666665555554433
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHh
Q 046039 427 YVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+|...|+++++.+++..-
T Consensus 729 -----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 -----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----HHHHHcCCHHHHHHHHHhc
Confidence 3566788888888776553
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=22 Score=40.98 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
..+|-...+.....|+++.|...+-.+.+..-+..+.-.+.-+...|+...|+.++++.++
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4455555665556677777766554444332333444455566667777777777777665
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.85 E-value=13 Score=38.19 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=117.5
Q ss_pred HHHhCCChhHHHHHHhhcCC---CCCee-------eHHHHH-HHHHhcCCHHHHHHHHHccCC--------CChhhHHHH
Q 046039 132 MYANCGFLSEARLMFDEVDT---EFDVV-------AWNSMI-IGLAKCGEIDESRRLFDKMVS--------RNTVSWNSM 192 (502)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~---~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l 192 (502)
......++++|..++.++.. .|+.. .|+.+- ......|++++|.++.+.... .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 44557888888888876543 23322 244433 234457888888888776632 245567777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCchHH--HHHHHHHHHHcC---CC---CchhHH
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLL-----NACAKLGAIRQ--GEWIHNFLVTNC---FE---LNTIVV 259 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~~~--a~~~~~~~~~~~---~~---~~~~~~ 259 (502)
..+..-.|++++|..+.....+..-.-+...+..+. ..+...|+... ....+....... .+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999999988776643233333333222 22445563322 223333322211 01 122344
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC------CCc-c---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPK------KGL-S---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP----DYISF 325 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~------~~~-~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~ 325 (502)
..+..++.+ .+.+..-...-.+ +.. . .+..|+......|+.++|...+.++......+ +..+-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 445555554 3333332222211 111 1 23467788888999999999998887643333 22222
Q ss_pred HHHHHH--HhcCCCHHHHHHHHHH
Q 046039 326 IAVLTA--CNHSGKVNQAKDYFTL 347 (502)
Q Consensus 326 ~~l~~~--~~~~~~~~~a~~~~~~ 347 (502)
...+.. -...|+...+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 2356888888777665
No 308
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.51 E-value=0.25 Score=26.33 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.|..++..+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666667777777777766666554
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.49 E-value=1.8 Score=40.47 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 368 LGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
+...|+++.+...+.....- ....+..+++....+.|++++|....+-++.-.-.++.+....+-.-...|-+|++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 34455555555554433221 2233444555555555555555555555555444444433333333344455555555
Q ss_pred HHHHhhhcCCc
Q 046039 446 ERLLMKEVKIE 456 (502)
Q Consensus 446 ~~~~~~~~~~~ 456 (502)
.++++..-+.+
T Consensus 413 ~wk~~~~~~~~ 423 (831)
T PRK15180 413 YWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccCCh
Confidence 55555544433
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.41 E-value=4.6 Score=32.07 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=59.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHY-SCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 409 (502)
-...++.+.+..++..+.. +.|..... ..-...+.+.|++.+|..+|+++... |....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 4466788888888888864 34443222 22344567889999999999988765 4444444555555443333333
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
.....++++..+ ++.....+ ..+........|.
T Consensus 97 r~~A~evle~~~-d~~a~~Lv-~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 97 RRYADEVLESGA-DPDARALV-RALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHhcCC-ChHHHHHH-HHHHHhccccchh
Confidence 334444555444 33333333 3344443443343
No 311
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.40 E-value=14 Score=37.49 Aligned_cols=212 Identities=16% Similarity=0.174 Sum_probs=89.8
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCc-------hhHHHHHHHHHHhCCCCch
Q 046039 51 NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLA-------RDGAQLHGRVVKQGLEFDQ 123 (502)
Q Consensus 51 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 123 (502)
+...| .+|-.+.|.|.+++|.++...... ........+...+..+....+. +....-|++..+.....|+
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 34455 567778899999999999976665 4556667788888888765322 3444455555443322243
Q ss_pred h---HHHHHHHHHHhCCC----hhH----HHHHH--h--hcCC-CC------CeeeHHHHHHHHHhcCCHHHHHHHHHcc
Q 046039 124 F---IHNTIIYMYANCGF----LSE----ARLMF--D--EVDT-EF------DVVAWNSMIIGLAKCGEIDESRRLFDKM 181 (502)
Q Consensus 124 ~---~~~~l~~~~~~~g~----~~~----a~~~~--~--~~~~-~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 181 (502)
. +|..+ .++.- ... .+.++ + -+.. .+ +..++..+-+...+-|. ..|..
T Consensus 188 yK~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~- 257 (613)
T PF04097_consen 188 YKRAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA- 257 (613)
T ss_dssp HHHHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT-
T ss_pred HHHHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc-
Confidence 2 22222 22211 100 11111 0 0000 00 01122111111111110 01111
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-CCCchhHHH
Q 046039 182 VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-FELNTIVVT 260 (502)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 260 (502)
..++..| ...+.-.|+++.|.+++-. ..+...+..++...+..+.-.+-..... ..+.... -.+.+.-+.
T Consensus 258 -~~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 258 -GSNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFA 328 (613)
T ss_dssp -------H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HH
T ss_pred -chhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHH
Confidence 1233333 3445668999999999877 2233556666666555443322222111 2222211 112225577
Q ss_pred HHHHHHHh---cCChHHHHHHHhcCCC
Q 046039 261 AIIDMYCK---CGCPERALQVFNTVPK 284 (502)
Q Consensus 261 ~l~~~~~~---~g~~~~A~~~~~~~~~ 284 (502)
.|+..|.+ ..+..+|.++|--+..
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 78888876 4577888888876654
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.39 E-value=1.5 Score=39.30 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCC--C----CChhHHHHHhccCCC-------CCcchHHHHHHHHhcCCCh
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSP--A----GDINYAYLVFTQIKK-------PNLFIWNTIIRGFSQSSTP 68 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~--~----~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~ 68 (502)
++...+++.|.+.|+.-+..+|.+.+... .. . .....|..+|+.|++ ++-..+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~-~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIIL-EEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888889998888887777755544 22 1 345667778888775 333445555443 33333
Q ss_pred ----HHHHHHHHHhHhcCCCCCCcc-cHHHHHHHHHhc-CC--chhHHHHHHHHHHhCCCCchhHHHHHHH
Q 046039 69 ----RNAILLFIDMLVTSPIQPQRL-TYPSLFKAYAQL-GL--ARDGAQLHGRVVKQGLEFDQFIHNTIIY 131 (502)
Q Consensus 69 ----~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 131 (502)
+.+...|+.+.+. |...+.. -+.+-+-++... .. ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4556667777665 5544432 222222222211 11 3467777888888887777666655443
No 313
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.33 E-value=1.8 Score=32.88 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 355 KPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPS--DPD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.++..+--.+..++.+..+ ..+.+.+|+.+.. .|+ -....-|.-++.+.|+++++++..+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4555555566667766654 4555667777663 232 2244456677888888888888888888888887654
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.33 E-value=0.52 Score=41.82 Aligned_cols=79 Identities=18% Similarity=0.030 Sum_probs=57.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG 372 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (502)
..-|.++|.+++|++.|.+.+.. .| +++++..-..+|.+...+..|+.-....... | ...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 56799999999999999988874 45 8899999999999999999888777766542 2 23455565555
Q ss_pred CHHHHHHHHHh
Q 046039 373 LLEEAEKLIRS 383 (502)
Q Consensus 373 ~~~~A~~~~~~ 383 (502)
.-.+++....+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444443333
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.21 E-value=4.3 Score=35.03 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=94.6
Q ss_pred ChHHHHHHHhcCCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhcCCCH
Q 046039 271 CPERALQVFNTVPKK-------GLSCWNSMVFGLAMNGYENEAIKLFSGLQSS---NL--KPDYISFIAVLTACNHSGKV 338 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~~~~ 338 (502)
++++|+.-|.++.+. +..+...++..+.+.|++++.+..|+++... .+ .-+..+.+.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555544331 1224445566666666666666666655421 01 12344555666555555555
Q ss_pred HHHHHHHHHhhhhc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------------CCHHHHHHHHHHH
Q 046039 339 NQAKDYFTLMTETY----KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--------------PDAIIWGSLLSAC 400 (502)
Q Consensus 339 ~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~l~~~~ 400 (502)
+...++++...... +-..--.+-..|...|...|.+.+..++++++... .-..+|..=+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 54444444332211 11111222345667777777777777777665321 1123555566677
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CCCcchHHHHH----HHHHhcCCchHHHH-HHHHh
Q 046039 401 RKHGNIEMAKQAAKQIIELD--KNESCGYVLMS----NLYAASYQFEEAME-ERLLM 450 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~----~~~~~~g~~~~A~~-~~~~~ 450 (502)
-..++-.+-..+|++++... -++|.+.-.+- ..+.+.|+|++|.. +|+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 77777778888888877644 23443333332 23566777877764 34443
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.13 E-value=18 Score=38.38 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 046039 263 IDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
++.--+.|-+.+|+.++..-.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334555566666555543333333455555555555555555555544321 112344555556666666
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 343 DYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.+..++.. +-..-..+-..|+.-+...++.-+|-++..+...+
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 66555432 11111111234555555666666666665555443
No 317
>PRK10941 hypothetical protein; Provisional
Probab=92.07 E-value=1.1 Score=39.51 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
..+.+-.+|.+.++++.|+.+.+.++.+.|+++.-+.-.|.+|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 346677789999999999999999999999999999999999999999999999877776543
No 318
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.56 Score=39.45 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 388 PDA-IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 388 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|.+ ..|..=+.++.+.++++.+..-..+++++.|+.....+.++.++.....+++|+.++.+.
T Consensus 41 P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 443 233444455555556666666666666666666656666666666666666666555554
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.97 E-value=0.76 Score=28.66 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
..+.++.++.+.|++++|.++.+.+.+ .+|++.........|.+++.+.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 356677789999999999999999874 46677777777777777777665
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.81 E-value=3.2 Score=34.07 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=67.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcC
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPS-----IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHG 404 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~ 404 (502)
+...|++++|..-|...+. -+++. ...|..-..++.+.+.++.|+.-..+... .|. ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4567788888888877776 33332 22344444566778888888877766553 232 223344456788888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 405 NIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+++|++-|+++++.+|....+....+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999877665555544
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.73 E-value=2.3 Score=37.48 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVVTA 261 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 261 (502)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|...|+...|+..|+.+.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355667777777788888888888887775 66777888888888888888888877777664 466666655544
Q ss_pred HHH
Q 046039 262 IID 264 (502)
Q Consensus 262 l~~ 264 (502)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.66 E-value=0.23 Score=25.54 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=16.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777654
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.55 E-value=3.1 Score=29.76 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046039 165 LAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMV 225 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (502)
+...|++++|..+.+...-||...|.+|.. -+.|-.+++...+..|...| .|....|.
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 555666666666666666667666665543 35566666666666676666 55444443
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.55 E-value=1.3 Score=35.78 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=41.5
Q ss_pred CCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 387 DPD-AIIWGSLLSACRKHG-----------NIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 387 ~~~-~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+|+ ..++..++.+|...+ .+++|...|+++...+|++......|-.+ ++|-++..++.+.+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHH
Confidence 364 357777777776443 36788888888889999998776666533 45777777777665
Q ss_pred Cc
Q 046039 455 IE 456 (502)
Q Consensus 455 ~~ 456 (502)
..
T Consensus 138 ~~ 139 (186)
T PF06552_consen 138 LG 139 (186)
T ss_dssp S-
T ss_pred hh
Confidence 53
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.39 E-value=6.5 Score=31.67 Aligned_cols=136 Identities=9% Similarity=0.048 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhc-CCHHHHHHHHHccCCCCh
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKC-GEIDESRRLFDKMVSRNT 186 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 186 (502)
.++++-+.+.+++|+...+..+++.+.+.|++..-..++.--.-+++...-..++..-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 4455666778899999999999999999999988888776544233333322222221111 11233444444443
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
..+..++..+...|++-+|+++.+...... .+ ....++.+..+.+|...-..+++...+.+
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 356667788888999999998887753322 12 22445666677777666666666665543
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.16 E-value=0.27 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++..++.++.+.|++++|.+.++++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999987543
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.16 E-value=4.1 Score=33.41 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HH
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKKGL------SCWNSMVFGLAMNGYENEAIKLFSGLQSS---NLKPDY----IS 324 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~----~~ 324 (502)
.+..+...|.+.|+.+.|.+.|.++.+... ..+..++....-.+++..+...+.+.... |..++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345566666666666666666666554321 14555566666666666666666555432 111111 12
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|..+ .+...+++..|-+.|-.....
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcC
Confidence 2222 233467888888887776543
No 328
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=0.94 Score=38.31 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+..+..++...|++-++++.....+...|.|..+|...+.+....=+.++|.+-|..+.+..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33445566778899999999999999999999999999988888888888888777776544
No 329
>PRK09687 putative lyase; Provisional
Probab=90.79 E-value=12 Score=33.53 Aligned_cols=50 Identities=16% Similarity=0.001 Sum_probs=21.7
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCC
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVK 201 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (502)
.++..+....+..+...|..+-...+..-+..+|+..-...+.++.+.|+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 44444444444555544443333333332233444444444444444444
No 330
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.58 E-value=22 Score=36.24 Aligned_cols=419 Identities=10% Similarity=-0.018 Sum_probs=189.5
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccCCCCCcch---HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHH
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQIKKPNLFI---WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAY 98 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 98 (502)
.|......+ +.|++..+.++-..+....... |..+...+ ....+++....+++-. +.+.....-...+..+
T Consensus 36 ~f~~A~~a~--~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 36 RYQQIKQAW--DNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANP---TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCC---CCchHHHHHHHHHHHH
Confidence 344444444 6677777777777765322222 22222211 1223444444433332 1122222222333444
Q ss_pred HhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHH-
Q 046039 99 AQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESR- 175 (502)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~- 175 (502)
.+.+++...+..+. . .+.+.........+....|+.++|....+.+-. ...+..++.++..+.+.|.+....
T Consensus 110 a~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 110 ARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHH
Confidence 55556665554221 1 234555556667777778887766655555422 344556666666666544332211
Q ss_pred -HHHHcc-CCCChhhHHHHHHHH-----------Hh-CCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCchH
Q 046039 176 -RLFDKM-VSRNTVSWNSMISGY-----------VR-NVKFKEALELFREMQEQNIKPSEFTMV---SLLNACAKLGAIR 238 (502)
Q Consensus 176 -~~~~~~-~~~~~~~~~~l~~~~-----------~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~ 238 (502)
+=++.. ...+...-..+...+ .. ..++..+...+. .++|+...-. ..+.-+ ...+.+
T Consensus 185 w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rl-ar~d~~ 258 (644)
T PRK11619 185 LERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASV-ARQDAE 258 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHH-HHhCHH
Confidence 111111 111211111111111 00 011111111111 1122221111 111112 234556
Q ss_pred HHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 239 QGEWIHNFLVTNC-FELN--TIVVTAIIDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 239 ~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
.|...+....... ..+. ..+...+....+..+...+|...+...... +.......+..-...++++.+...+..|
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 6777776653332 2111 112223322222222245555555554322 2233333344444666776666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-----------CCC-----C-ChhH--------HHHHHHHH
Q 046039 314 QSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY-----------KIK-----P-SIKH--------YSCMVDAL 368 (502)
Q Consensus 314 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~-----~-~~~~--------~~~l~~~~ 368 (502)
.... .-...-..-+.+++...|+.++|..+|+.+.... |.+ + .+.. -..-+..+
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L 417 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVREL 417 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHH
Confidence 4421 2233444455566555677777777666653211 111 0 0000 01123445
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHH
Q 046039 369 GRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD---KNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
...|....|...+..+....+......+.....+.|.++.++....+....+ -..|..|......+.+.-..+.++-
T Consensus 418 ~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 418 MYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred HHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHH
Confidence 5778888888877776655666666667777778888888887776544311 1223345555555555555666654
Q ss_pred HHHHhhhcCCccC
Q 046039 446 ERLLMKEVKIEKE 458 (502)
Q Consensus 446 ~~~~~~~~~~~~~ 458 (502)
.--.-.+.+..|.
T Consensus 498 ~ai~rqES~f~p~ 510 (644)
T PRK11619 498 MAIARQESAWNPK 510 (644)
T ss_pred HHHHHHhcCCCCC
Confidence 3222234444443
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.49 E-value=20 Score=35.79 Aligned_cols=272 Identities=10% Similarity=0.015 Sum_probs=157.5
Q ss_pred HHHHHHHHHccCCC-ChhhHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 046039 171 IDESRRLFDKMVSR-NTVSWNSMISG-----YVRNVKFKEALELFREMQE-------QNIKPSEFTMVSLLNACAKLG-- 235 (502)
Q Consensus 171 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-- 235 (502)
...+...++..... +...-..+..+ +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776443 33333333322 3456789999999988866 44 2224555666666543
Q ss_pred ---chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc---CChHHHHHHHhcCCCCCc-chHHHHHHHHHh----cCChH
Q 046039 236 ---AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC---GCPERALQVFNTVPKKGL-SCWNSMVFGLAM----NGYEN 304 (502)
Q Consensus 236 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~g~~~ 304 (502)
+.+.|..++....+.|. |+.... +..+|..- .+...|..+|....+.+- .++-.+...|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 56778888888888873 333322 33333322 356788888888776543 333333333332 34778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH---Hh----cCCHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL---GR----AGLLEEA 377 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 377 (502)
.|..++++..+.| .|....-...+..+.. ++++.+.-.+..+... +.......-..++... .. ..+...+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8999999988887 3343333333344444 6666666555555443 3222111111111111 11 2255666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CC--chHHHHHHHHh
Q 046039 378 EKLIRSMPSDPDAIIWGSLLSACRKH----GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS-YQ--FEEAMEERLLM 450 (502)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~--~~~A~~~~~~~ 450 (502)
...+.+...+-+......+...|... .+++.|...+..+.... ......++.++... |- +..|.++++..
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 66676666555666666676666543 46888988888887655 66677777666653 22 57788888777
Q ss_pred hhcC
Q 046039 451 KEVK 454 (502)
Q Consensus 451 ~~~~ 454 (502)
.+.+
T Consensus 536 ~~~~ 539 (552)
T KOG1550|consen 536 SEED 539 (552)
T ss_pred HhcC
Confidence 6544
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.25 E-value=13 Score=33.23 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 188 SWNSMISGYVRNVKF---KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
+...++.+|...+.. ++|..+++.+.... +..+..+..-++.+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 456667777776654 34555555664432 223445555666666677777777777777765
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.25 E-value=0.59 Score=25.72 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999998764
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=11 Score=32.08 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=33.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC---CCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 366 DALGRAGLLEEAEKLIRSMPSD---PDAIIW------GSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
..-...+++.+|+.+|+++... .+..-| ..-+.++....+.-.+...+++-.+++|.-.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 3344667788888888776431 111112 1222333444677777777777777787644
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.14 E-value=25 Score=36.25 Aligned_cols=218 Identities=17% Similarity=0.085 Sum_probs=110.8
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchh-------HHHHHH-HHHHhcCChHHHHHHHhcCCC--------CCcchHHH
Q 046039 229 NACAKLGAIRQGEWIHNFLVTNCFELNTI-------VVTAII-DMYCKCGCPERALQVFNTVPK--------KGLSCWNS 292 (502)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ 292 (502)
.......++.+|..++.++...-..|+.. .++.|- ......|+++.|.++-+.... ..+..+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 33456677888888777766543232211 122221 123346777877776654432 23456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHhcCCCHH--HHHHHHHHhhhhcCC-CC----ChhH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS---FIAVL--TACNHSGKVN--QAKDYFTLMTETYKI-KP----SIKH 360 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~--~~~~~~~~~~--~a~~~~~~~~~~~~~-~~----~~~~ 360 (502)
+..+..-.|++++|..+.++..+..-..+... +..+. ..+...|+.. +.+..+......+.. +| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77888888999998888776655322223322 22222 2244566332 223333333221111 11 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----C-CCC--HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHH
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMP----S-DPD--AI--IWGSLLSACRKHGNIEMAKQAAKQIIELD--KNESCGYVL 429 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~--~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~ 429 (502)
+..+..++.+ .+.+..-..... . .|. .. .+..|+......|+.++|...+.++..+. +.....|..
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 3444444444 333333222221 1 122 22 22367788888999999999999988743 321222211
Q ss_pred H-----HHHHHhcCCchHHHHHHHH
Q 046039 430 M-----SNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 430 l-----~~~~~~~g~~~~A~~~~~~ 449 (502)
. ...-..+|+..+|.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 1122346888777776555
No 336
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.94 E-value=0.51 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHH
Q 046039 111 HGRVVKQGLEFDQFIHNTIIYMYANCGFLSEAR 143 (502)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 143 (502)
|++.++.. |-+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455553 446777777888888888877775
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.83 E-value=12 Score=32.35 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=117.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-----CCCCchhH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQ---NI--KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN-----CFELNTIV 258 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 258 (502)
.-.++..+.+.+++++.++.|.+|+.- .+ .-+..+.+.++...+...+.+.-..+++.-++. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 345677777888888888877777431 11 223455666666555555555444444432221 11112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC------------C---cchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH
Q 046039 259 VTAIIDMYCKCGCPERALQVFNTVPKK------------G---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKPDY 322 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~ 322 (502)
-..|...|...+++.+..++++++... + ...|..=|..|..+.+-.....+|++...- ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345677777778887777777765431 1 126666777888887777777777776542 234555
Q ss_pred HHHHHHHHHH-----hcCCCHHHHHHHHHHhhhhc---CCCCCh--hHHHHHHHHHHhcCC----HHHHHHHHHhCCCCC
Q 046039 323 ISFIAVLTAC-----NHSGKVNQAKDYFTLMTETY---KIKPSI--KHYSCMVDALGRAGL----LEEAEKLIRSMPSDP 388 (502)
Q Consensus 323 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~ 388 (502)
.... +++-| .+.|++++|-.-|-+..+.+ |-+... .-|..|...+.+.|- -++|.. ....|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCH
Confidence 4444 34444 35678887765444444422 221111 123444555555441 111110 11135
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
.......|+.+|... +..+-.+++.
T Consensus 303 EIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 566677788887543 4444333333
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.72 E-value=0.85 Score=37.85 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRS-MPSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.+.-+..+.+.+++.+|+...+. ++.+| +..+-..++..++-.|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788999999988755 44566 555677888999999999999999999999988854
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=3.4 Score=36.54 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=24.5
Q ss_pred CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhh
Q 046039 103 LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDE 148 (502)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (502)
+++.++.++..=++.|+.||..+++.+|+.+.+.+++.+|.++...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555444433
No 340
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.02 E-value=0.25 Score=43.80 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=65.4
Q ss_pred hcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
..|.++.|++.|...... +....|..-..++.+.+++..|++-+..+++++|+...-|-.-+.+..-.|+|.+|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 566777777777666543 344455556667777888888888888888888888877777777777888888888888
Q ss_pred HHhhhcCCccC
Q 046039 448 LLMKEVKIEKE 458 (502)
Q Consensus 448 ~~~~~~~~~~~ 458 (502)
....+.+..+.
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 87777666544
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.95 E-value=17 Score=36.38 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHH
Q 046039 373 LLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS-YQFEEAMEER 447 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 447 (502)
+...|.++|......-....+..+..+|.. ..+...|...++++.+.++ +.....++..+.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 345566666555544333333333333321 2255666666666655552 22222222222211 5555555554
Q ss_pred HHhhhcCC
Q 046039 448 LLMKEVKI 455 (502)
Q Consensus 448 ~~~~~~~~ 455 (502)
..+.+.|.
T Consensus 421 ~~~a~~g~ 428 (552)
T KOG1550|consen 421 LYLAELGY 428 (552)
T ss_pred HHHHHhhh
Confidence 44444433
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.89 E-value=3.6 Score=38.63 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=79.9
Q ss_pred HhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 298 AMNGYENEAIK-LFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 298 ~~~g~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
...|+...|-+ ++.-++...-.|+...+...+ ....|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566666655 444444444445555444443 4567888888888877654 344456677778888888889999
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 377 AEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 377 A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
|..+-..|... .++.............|-++++...|++++.++|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88888777653 344444444444556677888888888888877653
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.78 E-value=0.75 Score=26.70 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++..|+.+|...|++++|+.++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999988653
No 344
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.71 E-value=17 Score=32.48 Aligned_cols=120 Identities=8% Similarity=0.010 Sum_probs=52.1
Q ss_pred HhCCChHHHHHHHHHHHHCC--CCCCHHH-----HHHHHHHHhccC-chHHHHHHHHHHHHc----C----CCCc-----
Q 046039 197 VRNVKFKEALELFREMQEQN--IKPSEFT-----MVSLLNACAKLG-AIRQGEWIHNFLVTN----C----FELN----- 255 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~-----~~~ll~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 255 (502)
.+.|+.+.|..++.+..... ..|+... +-.........+ +++.|...+++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35666777777766654422 1222111 111222223344 666666655554432 1 1111
Q ss_pred hhHHHHHHHHHHhcCChHH---HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 256 TIVVTAIIDMYCKCGCPER---ALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
..++..++.+|...+..+. |..+++.+.. ..+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2334455555555554332 3333333321 11223333344444455555555555555553
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=29 Score=35.13 Aligned_cols=101 Identities=8% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCH
Q 046039 95 FKAYAQLGLARDGAQLHGRVVKQGLEF---DQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEI 171 (502)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (502)
++.+.+.+.+++|+...+.... ..| -......++..+...|++++|-...-.|. ..+..-|.-.+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-GNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-cchHHHHHHHHHHhcccccc
Confidence 4555666677777766554433 222 23455667777777888888777666665 44445555555555555544
Q ss_pred HHHHHHHHccCC-CChhhHHHHHHHHHh
Q 046039 172 DESRRLFDKMVS-RNTVSWNSMISGYVR 198 (502)
Q Consensus 172 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 198 (502)
.....++-.-.. -++..|..++..+..
T Consensus 440 ~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhccCCCCCcccCchHHHHHHHHHHH
Confidence 433222222111 245567777766665
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.62 E-value=3.3 Score=34.27 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC---CcchHHHHHHHHHhcCCc
Q 046039 368 LGRAGLLEEAEKLIRSMPSDP---DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD-KN---ESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~ 440 (502)
+.+.|+ +.|.+.|-.+...| ++.....|+ .|....+.++++.++-+++++. |+ |+.++..|+.+|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 56666666665543 344444444 4455778999999999999854 22 678899999999999999
Q ss_pred hHHH
Q 046039 441 EEAM 444 (502)
Q Consensus 441 ~~A~ 444 (502)
++|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8884
No 347
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.41 E-value=19 Score=32.51 Aligned_cols=47 Identities=6% Similarity=0.280 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--CC----ChhHHHHHHhhcCC
Q 046039 105 RDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN--CG----FLSEARLMFDEVDT 151 (502)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~ 151 (502)
++.+.+++.+.+.|+..+..++.+..-.... .. ...+|..+|+.|.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 4456677777777777766665543333322 11 23445566666553
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.53 E-value=19 Score=31.71 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
++......|..+|.+.+|.++.++++.++|-+.+.+..|...+...|+--.|.+-+.++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456788999999999999999999999999999999999999999888888777764
No 349
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.43 E-value=20 Score=36.06 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------Ccc-hHHHHHHHHHhcCChHHHH
Q 046039 242 WIHNFLVTNCFEL---NTIVVTAIIDMYCKCGCPERALQVFNTVPKK----------GLS-CWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~l~~~~~~~g~~~~a~ 307 (502)
.++.+|.+.--.| .+.+...++-.|....+++...++.+.+.+. ++. .|.-.++--.+.|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 3455555432222 2445555666666667777766666655431 111 2222222223456777777
Q ss_pred HHHHHHHHCC--CCCCHHH-----HHHHH--HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC-CHHHH
Q 046039 308 KLFSGLQSSN--LKPDYIS-----FIAVL--TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG-LLEEA 377 (502)
Q Consensus 308 ~~~~~~~~~~--~~p~~~~-----~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A 377 (502)
...-.+.+.. +.||... |.-+. +.|...+..+.|.++|++.. .+.|+...--.+...+...| .++..
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccch
Confidence 7666665532 3455422 22221 22444566777888887765 44554332222222222222 22222
Q ss_pred HHH------HHhCCC-CCC---HH-HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 378 EKL------IRSMPS-DPD---AI-IW--GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 378 ~~~------~~~~~~-~~~---~~-~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.++ +..+.. +.. .. .| .....+-.-.+++.+|++..+.|.+++|+....-..+...
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 221 111111 111 11 11 1233344557899999999999999999877655555443
No 350
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.24 E-value=0.53 Score=37.08 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44455556666666666666655545556666666777776666666666666
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.87 E-value=13 Score=32.78 Aligned_cols=112 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred hhHHHHHhc--cCCC---CCcchHHHHHHHHhc--CCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 046039 37 INYAYLVFT--QIKK---PNLFIWNTIIRGFSQ--SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQ 109 (502)
Q Consensus 37 ~~~A~~~~~--~~~~---~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 109 (502)
+.+|+++|+ ...+ .|...-..+++.... +.....-.++.+-+....+..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHh-CCCCchhHHHHHHHHHHhCCChhHHHHHHhh
Q 046039 110 LHGRVVKQ-GLEFDQFIHNTIIYMYANCGFLSEARLMFDE 148 (502)
Q Consensus 110 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (502)
+++..... ++..|...|...++.....||..-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.16 E-value=2.4 Score=30.07 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCc
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--ESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 440 (502)
...-..+...+...|+++.|++.+-.+++.+|+ +...-..|..++.-.|.-
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 344444555555555555555555555554433 234444555555555543
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.14 E-value=1.1 Score=36.15 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC-----------chHHHHHHHHhhhc
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ-----------FEEAMEERLLMKEV 453 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~ 453 (502)
+++|+.-|++++.++|+...++..++.+|...+. +++|..+|++..+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888889999999999999999887544 45555555555443
No 354
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.89 E-value=60 Score=34.88 Aligned_cols=92 Identities=10% Similarity=-0.084 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
++...-...+.++.+.|..+.+...+..+..+++..+-...+.++...+. +++...+..+++ +| +..+....+.++.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHh
Confidence 34455555556666666554443444444444554444445555555543 234444444432 22 2334444444444
Q ss_pred hcCCchHHHHHHHHh
Q 046039 436 ASYQFEEAMEERLLM 450 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~ 450 (502)
+.+.-..+...+..+
T Consensus 864 ~~~~~~~a~~~L~~a 878 (897)
T PRK13800 864 RWPGDPAARDALTTA 878 (897)
T ss_pred ccCCCHHHHHHHHHH
Confidence 432223444444433
No 355
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.83 E-value=3.8 Score=36.58 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD----P--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.|.-=.+-|.+..++..|...|.+-... | +...|+.-..+-.-.||+..|+.-..+++.++|.+...+..=+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444556678888999999999776542 4 455788777788889999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHh
Q 046039 434 YAASYQFEEAMEERLLM 450 (502)
Q Consensus 434 ~~~~g~~~~A~~~~~~~ 450 (502)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988887765554
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.81 E-value=11 Score=31.29 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=52.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHhcCChH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC---FELNTIVVTAIIDMYCKCGCPE 273 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 273 (502)
.+.|+ +.|.+.|-.+...+.--++.....+.. |....+.+++..++....+.. -.+|+..+..|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33343 667777777777765555555555444 444667888888887776532 2567888888888888888887
Q ss_pred HHH
Q 046039 274 RAL 276 (502)
Q Consensus 274 ~A~ 276 (502)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 357
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.76 E-value=21 Score=29.49 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcch--HHHHHHHHHhcCCh
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSC--WNSMVFGLAMNGYE 303 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 303 (502)
...+...|++++|...++.........+ ..+--.|.+.....|.+++|+..++....++-.. ...-.+.+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3445566677777766666554321111 1122234555666777777777777766654332 33344566677777
Q ss_pred HHHHHHHHHHHHCC
Q 046039 304 NEAIKLFSGLQSSN 317 (502)
Q Consensus 304 ~~a~~~~~~~~~~~ 317 (502)
++|..-|++..+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777766654
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.68 E-value=2.8 Score=40.36 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.|+...|...+....-......+ .....|...+.+.|...+|-.++.+... ...+.++..+++++....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 36667777766665432111112 2233455666667777777777655432 23445677788888888888888888
Q ss_pred HHHHHhcCCCCcchHHHHHHH
Q 046039 413 AKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~ 433 (502)
|+.+++++|+++..-..|..+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHH
Confidence 888888888888777666544
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.67 E-value=1.7 Score=22.81 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999888754
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.52 E-value=8.2 Score=32.83 Aligned_cols=63 Identities=19% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--C----CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 392 IWGSLLSACRKHGNIE-------MAKQAAKQIIELD--K----NESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.+..+.+.|...|+.+ .|.+.|+++.+.. | +...+...+|.+..+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5566677777777754 4444555554422 2 234678889999999999999999999887654
No 361
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.30 E-value=31 Score=32.94 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHhcCChHHHHHHHhcCC---CCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH---
Q 046039 265 MYCKCGCPERALQVFNTVP---KKG---------LSCWNSMVFGLAMNGYENEAIKLFSGLQS-------SNLKPDY--- 322 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~---~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~--- 322 (502)
.+.-.|++.+|.+++...- .++ ...||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445677777777665322 111 11456666666666666666666655543 3444321
Q ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 323 --------ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 323 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
.+|+. .-.+...|++-.|.+.|..... -+..++..|-.|..+|.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 22332 2235566777777777777766 34556666766766654
No 362
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.15 E-value=33 Score=31.32 Aligned_cols=111 Identities=7% Similarity=0.042 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCc----ccHHHHHHHHHhcCCchhHHHHHHHHHH----hCCCCchhH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQR----LTYPSLFKAYAQLGLARDGAQLHGRVVK----QGLEFDQFI 125 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 125 (502)
+++.+..++.+.+.+...+.+..+.... ..|.. .....++..+.+.+++..+...++.-+. .+...++..
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k--~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~ 181 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK--MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKY 181 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH--hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHH
Confidence 3455556666666665554444444332 22222 2334455666677777666655543221 111112211
Q ss_pred H-HHHH---HHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 046039 126 H-NTII---YMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA 166 (502)
Q Consensus 126 ~-~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 166 (502)
+ ..+. -.|...++++.|+-+|.....-|....-...+.+|.
T Consensus 182 fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYk 226 (422)
T KOG2582|consen 182 FLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYK 226 (422)
T ss_pred HHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 1 1111 123345688888888887765554444334444433
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.11 E-value=2.7 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
|+.+.|..+|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999999988988888877764
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.91 E-value=2.1 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.026 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 428 VLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457788888888888888888887544
No 365
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.99 E-value=21 Score=28.05 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=25.8
Q ss_pred hcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC
Q 046039 100 QLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT 151 (502)
Q Consensus 100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 151 (502)
..++++.+..+++.|.-..+. ....-..-...+...|+|++|.++|+++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455666666666666543211 122222233344556666666666666654
No 366
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.48 E-value=8.8 Score=29.40 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 046039 364 MVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~ 384 (502)
|.-++.+.++++++.++.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 444445555555555554443
No 367
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.35 E-value=49 Score=31.91 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 219 PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
.|.....+++..+.....+.-++.+..++..-| -+...+..++++|... ..+.-..+++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 344444555555555555555555555555543 2334444555555554 3334444444
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.11 E-value=11 Score=29.59 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCC----CCCCcccHHHHHHHHHhcCC-chhHHHHHHHHHHhCCCCchhHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSP----IQPQRLTYPSLFKAYAQLGL-ARDGAQLHGRVVKQGLEFDQFIHNTI 129 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (502)
.|+++......+++.-.+.+++.+..-.. -..+..+|..++.+.+...- --.+..+|+.+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444455444444444421100 01233455555555544433 23345555555555555555555555
Q ss_pred HHHHHh
Q 046039 130 IYMYAN 135 (502)
Q Consensus 130 ~~~~~~ 135 (502)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 369
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.09 E-value=9.5 Score=28.72 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
..+-++.+...++.|++......+++|.+.+++..|.++|+.+.. .+.+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 334455566677889999999999999999999999999998876 3344444555444
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.03 E-value=22 Score=31.25 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=52.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK---- 268 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 268 (502)
|.+++..++|.+++.+.-+--+.--+.........|-.|.+.+++..+.++-.......-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677777788777776655433222223345555566677888887777777666654323333446666666543
Q ss_pred -cCChHHHHHHH
Q 046039 269 -CGCPERALQVF 279 (502)
Q Consensus 269 -~g~~~~A~~~~ 279 (502)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56777777666
No 371
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.02 E-value=12 Score=26.68 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
++.+-++.+....+.|++....+.+++|.+.+|+..|..+++-+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555556677777777777777777777777777766553
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.92 E-value=10 Score=26.52 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHH
Q 046039 4 LKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAI 72 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 72 (502)
+..+++.+.+.| -.+......+-+.- ...|+.+.|.+++..++ .....|...+.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~-ilT~~d~e~I~aa~-~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQG-LLTEEDRNRIEAAT-ENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhc-cccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 456777777777 34455566666554 46688888888888888 67777888888887777655543
No 373
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.60 E-value=12 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
+..+-++.+....+.|++....+.+++|.+.+++..|..+++-+..+. ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344555555556677777777777777777777777777777766543 222225554443
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.42 E-value=5.6 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNE---------SCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
..+.|++..|.+.+.+..+....+ ......++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346777777777777666522111 12345566677788888888888877764
No 375
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.00 E-value=23 Score=31.67 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=68.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 251 CFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
|.+....+...++..-....+++.++..+-++...--. +-.+.+..+ ..-++++++.++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 33444445555555555567778888777666542111 112222322 33466788888888889999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
++.+++.+.+.+++.+|.++.-.|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988877664
No 376
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.36 E-value=22 Score=26.63 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIE-------LDKNESC----GYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
..++..|..++...|++++++...++++. ++.+.-. +...-+.++...|+.++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455666777777877777666666553 4444332 3444556778889999999888764
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.24 E-value=16 Score=27.94 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 408 MAKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 408 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.+.++|+.|.+ +.-..+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888876 5566777888888888889999999888875
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.83 E-value=15 Score=35.80 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHhcC--CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC--CHHHH
Q 046039 319 KPDYISFIAVLTACNHS--GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP--DAIIW 393 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~ 393 (502)
-|+..+...++.-.... ...+-+-.++-.|.. .+.|--...|.-...+...|+...|..-+..+.. .| .....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35666666655444322 233445555555543 3344333333333334457899999987766543 34 23355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
..|.+...+.|-.-.|-.++.+.+.+.-..|-++..++++|....+.+.|++.|+.+.+...
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 66778888888888999999999999988999999999999999999999999998876544
No 379
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.78 E-value=53 Score=30.69 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-hcCCchHHHHHHHHhhh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKN-ESCGYVLMSNLYA-ASYQFEEAMEERLLMKE 452 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 452 (502)
..+..+.+.|-+..|.++.+-++.++|. ||......+..|. ++++++--+++.+....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456677888888888888888888887 7766555555444 56777767776665543
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.57 E-value=4.4 Score=27.57 Aligned_cols=45 Identities=9% Similarity=-0.010 Sum_probs=29.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHHHH
Q 046039 402 KHGNIEMAKQAAKQIIELDKNESC---GYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 402 ~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 446 (502)
..++.++|+..|+++++..++.+. ++-.|..+|...|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777775554443 344455567777777777664
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.42 E-value=47 Score=31.32 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=32.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--cCCCHHHHHHHHHHhhh
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYI--SFIAVLTACN--HSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 350 (502)
+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44567777777777777765 444443 3333334432 35567777777777655
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.72 E-value=65 Score=31.05 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCHHHH-HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH---HhcCCHHHHHHHHHhCCCC--CCHHH
Q 046039 319 KPDYISF-IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL---GRAGLLEEAEKLIRSMPSD--PDAII 392 (502)
Q Consensus 319 ~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~--~~~~~ 392 (502)
.|+..|+ +.++.-+...|-...|...+..+.. --+|+...|..++..= ..+| ...+...|+.+... .++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 4455444 3456667778888999999998876 4456677777776542 2233 67777777777643 57778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIE-LDKNE 423 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~ 423 (502)
|...+..-...|..+.+-.++-++.+ ++|..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 88888777788888888888888776 55653
No 383
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.66 E-value=1e+02 Score=33.25 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=80.1
Q ss_pred HHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH-HHHHHHHHHHcCCCCch
Q 046039 178 FDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ-GEWIHNFLVTNCFELNT 256 (502)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~ 256 (502)
...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++...+..+. +...+..+.+ .++.
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~ 789 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDP 789 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCH
Confidence 344445555555555555555444322 11222 13455555555556655554332 2333333333 3456
Q ss_pred hHHHHHHHHHHhcCChHHHHH-HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 257 IVVTAIIDMYCKCGCPERALQ-VFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
.+-...+.++...|....+.. +...+...+...-...+.++...+. +++...+..+.+ .|+...-...+.++...
T Consensus 790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 666666777777776554432 3333334454455555666666654 345555555543 45555555666666664
Q ss_pred CCHHHHHHHHHHhhh
Q 046039 336 GKVNQAKDYFTLMTE 350 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~ 350 (502)
+....+...+..+..
T Consensus 866 ~~~~~a~~~L~~al~ 880 (897)
T PRK13800 866 PGDPAARDALTTALT 880 (897)
T ss_pred CCCHHHHHHHHHHHh
Confidence 333455555555554
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.25 E-value=20 Score=35.04 Aligned_cols=74 Identities=15% Similarity=0.032 Sum_probs=37.0
Q ss_pred HHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCch
Q 046039 26 ILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLAR 105 (502)
Q Consensus 26 ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 105 (502)
+..++ .+.|-.+.|+.+--. ||. -.....+.|+++.|.++..+.. +..-|..|.++....+++.
T Consensus 620 va~Fl-e~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 620 VAHFL-ESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELP 683 (794)
T ss_pred HHhHh-hhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccch
Confidence 33444 555666666554322 111 1122334566666655544432 2334666666666666666
Q ss_pred hHHHHHHHHH
Q 046039 106 DGAQLHGRVV 115 (502)
Q Consensus 106 ~a~~~~~~~~ 115 (502)
.|.+.+....
T Consensus 684 lA~EC~~~a~ 693 (794)
T KOG0276|consen 684 LASECFLRAR 693 (794)
T ss_pred hHHHHHHhhc
Confidence 6666665543
No 385
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.06 E-value=71 Score=30.65 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=82.2
Q ss_pred cCCChHHHHHHHHHhHhcCCCCCCc-----ccHHHHHHHHHhcC-CchhHHHHHHHHHHhC--CC-CchhHHHHHHHHHH
Q 046039 64 QSSTPRNAILLFIDMLVTSPIQPQR-----LTYPSLFKAYAQLG-LARDGAQLHGRVVKQG--LE-FDQFIHNTIIYMYA 134 (502)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~ 134 (502)
-..+++.|...++.......--|+. .++..+...+.... .+..+..++.+.++.. .+ ..-.....++..+.
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 3567777777776654321212322 24566667776665 7888999998887743 11 11223345667777
Q ss_pred hCCChhHHHHHHhhcCCC--CCeeeHHHHHHH------HHhcCCHHHHHHHHHcc---CC---CChh------h--HHHH
Q 046039 135 NCGFLSEARLMFDEVDTE--FDVVAWNSMIIG------LAKCGEIDESRRLFDKM---VS---RNTV------S--WNSM 192 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~---~~---~~~~------~--~~~l 192 (502)
-..|+..|.+++.--... +-...|..++.. ..-..+..++.++.... .+ +|.. . .+.-
T Consensus 139 idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lq 218 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQ 218 (629)
T ss_pred hhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 788999999987644332 222333333222 22233444444444333 22 2222 1 2223
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 046039 193 ISGYVRNVKFKEALELFREMQE 214 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~ 214 (502)
+..|.-.|+...+...++++.+
T Consensus 219 l~yy~~~gq~rt~k~~lkQLQ~ 240 (629)
T KOG2300|consen 219 LSYYLLPGQVRTVKPALKQLQD 240 (629)
T ss_pred HHHHhcccchhhhHHHHHHHHH
Confidence 3456667887777777776654
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.87 E-value=20 Score=25.08 Aligned_cols=66 Identities=9% Similarity=-0.004 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
+.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .++..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3445566666653 233333323222234577888888888888 77888888888887777655443
No 387
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.73 E-value=50 Score=28.67 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=83.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 292 SMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
.++....+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++........-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 3566677888899999999998888766666555555555432 34455566666655443111111 222233333321
Q ss_pred c------CCHHHHHHHHHhCCCC----CCHHHH-H-HHHHHH---HhcC-------CHHHHHHHHHHHHh-----cCCCC
Q 046039 371 A------GLLEEAEKLIRSMPSD----PDAIIW-G-SLLSAC---RKHG-------NIEMAKQAAKQIIE-----LDKNE 423 (502)
Q Consensus 371 ~------g~~~~A~~~~~~~~~~----~~~~~~-~-~l~~~~---~~~~-------~~~~A~~~~~~~~~-----~~p~~ 423 (502)
. .--.+...+++..... +....| . .-+..| +... -.+.|.+.|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 1123444444443211 111121 1 111111 1111 23678888888775 56777
Q ss_pred cchHHHH----HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 424 SCGYVLM----SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 424 ~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
|.-+... ...|...|+.++|.++.+...+..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7532222 2235668999999998888776554
No 388
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.58 E-value=93 Score=31.72 Aligned_cols=177 Identities=8% Similarity=0.018 Sum_probs=96.5
Q ss_pred HHHHHHHHH-HhCCCCC--hHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcc-----hHHHHHHHHhcCCChHHH
Q 046039 4 LKKIHAHLI-KTGLAKD--PIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLF-----IWNTIIRGFSQSSTPRNA 71 (502)
Q Consensus 4 ~~~i~~~~~-~~g~~p~--~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~-----~~~~li~~~~~~~~~~~a 71 (502)
+.+-++-+. +..++|. ..++..+...++....+++.|+..+++... ++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 444444454 4444443 456677777775677899999999887643 1111 2234456666665544 8
Q ss_pred HHHHHHhHhcCCC---CCCcccHHHH-HHHHHhcCCchhHHHHHHHHHHhC---CCCchhHHHHHHHHHH--hCCChhHH
Q 046039 72 ILLFIDMLVTSPI---QPQRLTYPSL-FKAYAQLGLARDGAQLHGRVVKQG---LEFDQFIHNTIIYMYA--NCGFLSEA 142 (502)
Q Consensus 72 ~~~~~~~~~~~~~---~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a 142 (502)
...+++..+...- .+-...|..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. ..+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888876654211 1222233333 222333478888988888876642 2334444455555444 34445555
Q ss_pred HHHHhhcCC------------CCCeeeHHHHHHHH--HhcCCHHHHHHHHHcc
Q 046039 143 RLMFDEVDT------------EFDVVAWNSMIIGL--AKCGEIDESRRLFDKM 181 (502)
Q Consensus 143 ~~~~~~~~~------------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 181 (502)
.+.++++.. .|...+|..+++.+ ...|+++.+...++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544311 23444566666554 4466766666665554
No 389
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.54 E-value=24 Score=25.01 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.++..++.+|+++.....++..+...|++++|++.+-.+.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555554444433
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.54 E-value=7.4 Score=23.15 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=15.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 192 MISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566666666666666666666443
No 391
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=76.33 E-value=57 Score=29.15 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHhcCChHHHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~ 307 (502)
...|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346778888888888776543
No 392
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.07 E-value=76 Score=30.44 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHh---CC-CCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHc
Q 046039 105 RDGAQLHGRVVKQ---GL-EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180 (502)
Q Consensus 105 ~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 180 (502)
++...++...... |+ ..+......++... .|+...+..+++......... ..+....++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~~ 218 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHhh
Confidence 4555555554432 33 44555555554432 677777777766543110001 12222222222
Q ss_pred c---CCCChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046039 181 M---VSRNTVSWNSMISGYVR---NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL 234 (502)
Q Consensus 181 ~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 234 (502)
. ...+...+..+++++.+ .++++.|+.++..|.+.|..|....-..+..++-..
T Consensus 219 ~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 219 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred hhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 1 12223344455555555 478999999999999998777655555544444333
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.46 E-value=62 Score=29.11 Aligned_cols=77 Identities=16% Similarity=-0.028 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------------
Q 046039 376 EAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY------------- 438 (502)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 438 (502)
.|...|.++-..-+......+...|.. ..+.++|...|+++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555555444444444445544432 2366777777777766555 44445555 455444
Q ss_pred --CchHHHHHHHHhhhcCC
Q 046039 439 --QFEEAMEERLLMKEVKI 455 (502)
Q Consensus 439 --~~~~A~~~~~~~~~~~~ 455 (502)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55566666666555444
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.00 E-value=1.9 Score=40.49 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=74.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY-SCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHG 404 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~ 404 (502)
-+......+.++.|..++.++++ ..|+-..| ..=..++.+.+++..|..=+.++.+ .|. ...|..=+.++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999998884 45654433 3333678888999888876666553 343 345666677888888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 405 NIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+.+|...|+....+.|+++.+...+-.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 99999999999999999998776665543
No 395
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.96 E-value=13 Score=20.98 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--HHHhcCCC
Q 046039 393 WGSLLSACRKHGNIEMAKQAAK--QIIELDKN 422 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~ 422 (502)
|-.++..+...|++++|+++|. -+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3445555666667777777633 55445543
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.72 E-value=45 Score=29.39 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHH----HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 046039 262 IIDMYCKCGCPERALQV----FNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC----- 332 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----- 332 (502)
=|++++..++|.++... |+.-.+-.+.....-|-.|.+.+++..+.++-..-....-.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777788888876654 333333345566667777888888877777766655432222333455555544
Q ss_pred hcCCCHHHHHHHH
Q 046039 333 NHSGKVNQAKDYF 345 (502)
Q Consensus 333 ~~~~~~~~a~~~~ 345 (502)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 3467888887776
No 397
>PRK12798 chemotaxis protein; Reviewed
Probab=74.62 E-value=77 Score=29.86 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=87.7
Q ss_pred cCChHHHHHHHhcCCCC----CcchHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCCHH
Q 046039 269 CGCPERALQVFNTVPKK----GLSCWNSMVFG-LAMNGYENEAIKLFSGLQSSNLKPDY----ISFIAVLTACNHSGKVN 339 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 339 (502)
.|+..++.+.|..+... ....+-.|+.+ .....+...|+++|+..+-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46777777777666543 22345555544 33455777777777776542 2332 23333444556778888
Q ss_pred HHHHHHHHhhhhcCCCCChhHH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHY-SCMVDALGRAG---LLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
++..+-.....++...|-...| ..+..++.+.+ ..+.-..++..|...-....|..+...-.-.|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777766666655444443333 22333333333 3444445555554333345777777777888888888888888
Q ss_pred HHhcC
Q 046039 416 IIELD 420 (502)
Q Consensus 416 ~~~~~ 420 (502)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88754
No 398
>PF13934 ELYS: Nuclear pore complex assembly
Probab=74.48 E-value=50 Score=28.43 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=52.3
Q ss_pred HHHHHHHHH--hcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhc
Q 046039 91 YPSLFKAYA--QLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKC 168 (502)
Q Consensus 91 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (502)
|...++++. ..+++++|...+-.- .+. +.....++.++...|+.+.|..+++....+.+...-..+......+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~ 153 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALAN 153 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHc
Confidence 445555543 345566665555211 111 1222356667777777777777777765322222112222233556
Q ss_pred CCHHHHHHHHHccCCCC-hhhHHHHHHHHHh
Q 046039 169 GEIDESRRLFDKMVSRN-TVSWNSMISGYVR 198 (502)
Q Consensus 169 ~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~ 198 (502)
+.+.+|...-+....+. ...+..++..+..
T Consensus 154 ~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred CCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 77777777666655432 2344455554443
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.40 E-value=63 Score=28.74 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
++.....|..+|.+.+|.++.+..+..+ +.+...+..++..+...||--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455577888888999998888888775 7778888888888888888767666666554
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.30 E-value=47 Score=27.21 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCC-CC----HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 046039 374 LEEAEKLIRSMPSD-PD----AIIW-----GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 374 ~~~A~~~~~~~~~~-~~----~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 443 (502)
++.|..+++.+.++ +. .... ...+..|.+.|.+++|.+++++..+ +|++...-.-|..+-...+.+..-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Confidence 56677777766543 11 1111 2345678899999999999999888 777777655555443333334443
Q ss_pred H
Q 046039 444 M 444 (502)
Q Consensus 444 ~ 444 (502)
+
T Consensus 164 l 164 (200)
T cd00280 164 L 164 (200)
T ss_pred H
Confidence 3
No 401
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.97 E-value=1.1e+02 Score=31.08 Aligned_cols=178 Identities=12% Similarity=0.071 Sum_probs=92.5
Q ss_pred HHHHHHHHhHhcCCCCCCcc--cHHHHHHHHH-hcCCchhHHHHHHHHHHhCCCCchh-----HHHHHHHHHHhCCChhH
Q 046039 70 NAILLFIDMLVTSPIQPQRL--TYPSLFKAYA-QLGLARDGAQLHGRVVKQGLEFDQF-----IHNTIIYMYANCGFLSE 141 (502)
Q Consensus 70 ~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 141 (502)
.|+..++.+.+...++|... ++..+...+. ...+++.|...+.+.....-.++-. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45666666664434444433 4445555554 5678888888888765543222211 1234556666666555
Q ss_pred HHHHHhhcCC---C----CCeeeHHHH-HHHHHhcCCHHHHHHHHHccCC-----CChh--hHHHHHHH--HHhCCChHH
Q 046039 142 ARLMFDEVDT---E----FDVVAWNSM-IIGLAKCGEIDESRRLFDKMVS-----RNTV--SWNSMISG--YVRNVKFKE 204 (502)
Q Consensus 142 a~~~~~~~~~---~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~--~~~~~~~~~ 204 (502)
|...+++... . +-...+..+ +..+...++...|.+.++.+.. .+.. ++-.++.+ ..+.+.++.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 7776666443 1 111122222 2222233678888887777622 2222 23333333 234565677
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHh--ccCchHHHHHHHHHHH
Q 046039 205 ALELFREMQEQN---------IKPSEFTMVSLLNACA--KLGAIRQGEWIHNFLV 248 (502)
Q Consensus 205 a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 248 (502)
+.+.++.+.... ..|-..++..++..++ ..|++..+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777663321 1334555666665543 5566666666655554
No 402
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.96 E-value=6.6 Score=33.14 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=31.1
Q ss_pred HhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 369 GRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
.+.++.+.|.+++.++..- | ...+|-.+...-.+.|+++.|.+.|++.++++|++..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3455555555555555432 2 3345555555555566666666666666666655443
No 403
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.67 E-value=1.2e+02 Score=31.03 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCCh-------HHHHHHHHHhHh
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTP-------RNAILLFIDMLV 80 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~ 80 (502)
.|+|++++|.++...... .....+-..+..+..+.+- ++...-|+...+
T Consensus 122 LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r 180 (613)
T PF04097_consen 122 LRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIR 180 (613)
T ss_dssp HTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 799999999999943332 4456677778888765332 355555665554
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.65 E-value=68 Score=28.35 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhccCchH-HHHH
Q 046039 168 CGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALEL----FREMQEQNIKPSEFTMVSLLNACAKLGAIR-QGEW 242 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~ 242 (502)
.+++++|++++..- ...+.+.|+...|-++ ++-..+.+.+.|......++..+...+.-+ .-.+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45556666555432 2344555554444433 333444566667666666666555443211 2223
Q ss_pred HHHHHHH---cC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 243 IHNFLVT---NC--FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 243 ~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
+.+.+++ .+ ..-++.....+...|.+.|++.+|+..|-.-..+....+..++......|...++
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------- 140 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------- 140 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-----------
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-----------
Confidence 3333332 22 2246778888889999999999988877654333222222222222222222221
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 318 LKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 318 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
+...-..++ -|...++...|...++...+.
T Consensus 141 ---dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ---DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 112222222 244557888888877776653
No 405
>PF13934 ELYS: Nuclear pore complex assembly
Probab=72.15 E-value=64 Score=27.80 Aligned_cols=71 Identities=24% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK 402 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (502)
++.++...|+...|..+++...- ...+......++.. ...+.+.+|..+-+....+-....+..++..+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44555556677777776665431 11122222222333 4567777777776666543223455555555553
No 406
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.88 E-value=24 Score=27.59 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 375 EEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
+.|.++.+-|. ...............|++..|.++.+.++..+|++.......+.+|...|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 233334455567789999999999999999999999999999988877654
No 407
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.36 E-value=12 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=19.3
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
..+..++|+..|....++..-+++ -.++..++.+|+..|++.+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443211111 1223344444444454444443
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.33 E-value=32 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777788888888888877766
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.82 E-value=20 Score=29.98 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 387 DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
.|++.+|..++.++...|+.++|.+...++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 36666666666666666666666666666666666
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.25 E-value=8.3 Score=34.06 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 046039 370 RAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 427 (502)
+.|+.++|..+|+.+.. .| ++....-++...-..++.-+|-++|-+++.+.|.+...+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 45666666666655432 23 334444455445555566666666666666666655443
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.93 E-value=95 Score=28.51 Aligned_cols=160 Identities=10% Similarity=0.048 Sum_probs=101.3
Q ss_pred CcchHHHHHHHHHhcC---C---------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 286 GLSCWNSMVFGLAMNG---Y---------ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 286 ~~~~~~~l~~~~~~~g---~---------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
|+.+|-.++..--..- . .+.-+.++++..+.+. .+......++..+.+..+.+...+-|+.+...
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-- 94 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-- 94 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--
Confidence 5678888876533221 1 3566778888888743 46677788888888888999999999999874
Q ss_pred CCCChhHHHHHHHHHHh---cCCHHHHHHHHHhCCC-------C--------CC-----HHHHHHHHHHHHhcCCHHHHH
Q 046039 354 IKPSIKHYSCMVDALGR---AGLLEEAEKLIRSMPS-------D--------PD-----AIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 354 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-------~--------~~-----~~~~~~l~~~~~~~~~~~~A~ 410 (502)
.+-+...|...+..... .-.+++...+|.+... . ++ ...+..+...+...|..+.|.
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Confidence 33467777777765443 2345666666554422 1 11 113344455567899999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.+++-+++++--.|.....- ...+.++.|+...+.++.
T Consensus 175 a~~Qa~lE~n~~~P~~~~~~--------~~~~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 175 ALWQALLEFNFFRPESLSSS--------SFSERLESFEEFWESEVP 212 (321)
T ss_pred HHHHHHHHHHcCCccccccc--------cHHHHHHHHHHHhCcCCC
Confidence 99999999653322211111 111556677777766553
No 412
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.83 E-value=1.1e+02 Score=29.40 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+....+-.|...|++-.|.++|.++......+|..|..|+.+|.-+
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444566788899999999999999999999999999999998754
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.72 E-value=1e+02 Score=28.83 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=67.5
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHH-HHHHHHhcC-CHHHHHHHHHccCCCChhhHHHH---HH
Q 046039 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNS-MIIGLAKCG-EIDESRRLFDKMVSRNTVSWNSM---IS 194 (502)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l---~~ 194 (502)
+-...++..+...+...|+.+.|.+++++..- ++.. +...+.... +......-++--...|...|-++ |.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf-----~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF-----AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 44566777777777777877777777665430 0000 000000000 00000000000011244444433 45
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCchHHHHHHHHHHHH
Q 046039 195 GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA-KLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 249 (502)
.+.+.|-+..|+++.+-+...+..-|+.....+|..++ +.++++--.++.+....
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 67788889999999988888875547777777777765 55666666666665444
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.63 E-value=45 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888888776
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=66.91 E-value=17 Score=30.85 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=36.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
..+.++.+.+.+++.+... -.+.....|-.+...-.+.|+++.|.+.+++..+
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3456777777777777764 3334466666677767777888888877777653
No 416
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.87 E-value=46 Score=24.10 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
.++|..+-+.+...+-. ...+--.-+..+.+.|+|++|..+.+...-+|...|.+|.. .+.|-.+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544311 11111122334566778888887777777677666666544 3455556666666666665
Q ss_pred C
Q 046039 317 N 317 (502)
Q Consensus 317 ~ 317 (502)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 417
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.13 E-value=3.4e+02 Score=33.81 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+..=+....+.|+.++|-+.|..+++++-.-+..|...+
T Consensus 2815 f~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg 2853 (3550)
T KOG0889|consen 2815 FTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWG 2853 (3550)
T ss_pred HHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHH
Confidence 333444455666666666666666665544444444443
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.13 E-value=1.3e+02 Score=28.85 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCChHH--HHHHHHhhhCCCCChhHHHHHhcc
Q 046039 7 IHAHLIKTGLAKDPIA--ASRILAFCTSPAGDINYAYLVFTQ 46 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~--~~~ll~~~~~~~~~~~~A~~~~~~ 46 (502)
+.+.+.+.|..|+... ..+.|..+ ++.|+.+-+.-+++.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A-~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLA-MKFRDSEAIKLLMKH 57 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHH-HHcCCHHHHHHHHhC
Confidence 4455556666655432 22233333 455666555555544
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.00 E-value=1.2e+02 Score=28.52 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQN--IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
.+.-+...|...|+++.|++.|.+.+.-- .+.....|..+|....-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45566677777777777777777754421 112233444555555556666666655555544
No 420
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.45 E-value=85 Score=26.67 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
+.-++.+.+.+..++++...++-.+..+ .+..+-..++..++-.|++++|..-++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3345556666667777666655555421 23344445556666667777766655544
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.23 E-value=48 Score=27.17 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACR 401 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 401 (502)
+..|.+.|.+++|.+++++...+|+......-+....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II 154 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 3457777888888888877766665555444443333
No 422
>PRK10941 hypothetical protein; Provisional
Probab=65.08 E-value=55 Score=29.03 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
+.+-.+|.+.++++.|.+..+.+.. .| ++.-+.--+-.|.+.|.+..|..-++..++.-|+++..-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3455677788888888888877653 34 55566667777888888888888888888888887765433
No 423
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=62.80 E-value=35 Score=29.91 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..+=..+.+.++++.|....++.+.++|+++.-..--|.+|.+.|.+.-|++-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344467788899999999999999999999988888888999999999998877665443
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.70 E-value=30 Score=28.82 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=38.6
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
...++.+......+.+.+.....|++.+|..++.++...|+.++|.++.+++..
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555555555555544446678888888888888889999999888877653
No 425
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=2e+02 Score=29.50 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-cCCC-CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIE-LDKN-ESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
+.-++.--|+-++|..+.+++.. .+|- ...-...++.+|.-.|+..-..+++.-.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~a 563 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVA 563 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccc
Confidence 34455666777778888887775 3332 2234555666788887776555554443
No 426
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.13 E-value=1.4e+02 Score=27.20 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------CCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHhcCC
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH------SGKVNQAKDYFTLMTETYKIKPSI-KHYSCMVDALGRAGL 373 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 373 (502)
+-++++..++.+....+. |.+......|.++-. .-+|.....+|+.+.. +.|++ .+.|.- -+.....-
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRA-VAla~~~G 344 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRA-VALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHH-HHHHHhhh
Confidence 446788888888888764 888888887777642 2367788888887764 34543 333332 23444555
Q ss_pred HHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 374 LEEAEKLIRSMPSDPDAI----IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+.+..+.+.+..+|... .+..-...+.+.|+.++|...|++++.+.++...-
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 677777777777654222 33445667889999999999999999988775543
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.12 E-value=1.4e+02 Score=26.97 Aligned_cols=57 Identities=7% Similarity=0.087 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAK 167 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 167 (502)
++++.+...++.|.-..+..+.-.+...=.+.....+++.+...|.- |..|+..|+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--fd~Ll~iCcs 320 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--FDFLLYICCS 320 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--hHHHHHHHHH
Confidence 44555555556666555555555555555556666666655532222 4444444443
No 428
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.79 E-value=70 Score=25.23 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 207 ELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
++.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566778777654 345667777777778899999999998877766666556666666553
No 429
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.59 E-value=16 Score=37.44 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
..+|..|+....+.|+.+-|+..|++.. .|..|-..|.-.|+.++-.++.+.
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEEeCCHHHHHHHHHH
Confidence 3445555555555555555555554443 233333344445555544444333
No 430
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.04 E-value=1.2e+02 Score=26.08 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCC
Q 046039 390 AIIWGSLLSACR---------KHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 390 ~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~p~ 422 (502)
...|..++..+. ..++...|...++++.+++|.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 345666676663 456788999999999999986
No 431
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.44 E-value=21 Score=31.79 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=56.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGS-LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
.+..|+..|...+....+.|.+.+...+|.++... | ++..|.. -..-+...++++.+..+|.+.+..+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 44556667766666556667777777777776543 4 5556643 3334567889999999999999999999988765
Q ss_pred HHH
Q 046039 430 MSN 432 (502)
Q Consensus 430 l~~ 432 (502)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 543
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.09 E-value=1.6e+02 Score=26.95 Aligned_cols=245 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccC-CC-CCcchHHHHHHHHhcCC------ChHHHH-------HHHHHhHhcCCCCC
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQI-KK-PNLFIWNTIIRGFSQSS------TPRNAI-------LLFIDMLVTSPIQP 86 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~li~~~~~~~------~~~~a~-------~~~~~~~~~~~~~p 86 (502)
.++-+........-++..++.++..+ +. ++...|..++..+..-. ...... +++..+.++-|..+
T Consensus 41 ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 120 (324)
T PF11838_consen 41 LLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDP 120 (324)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q ss_pred C--cccHHHHHHHH-HhcCC-----chhHHHHHHHHHHhCC----CCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCC
Q 046039 87 Q--RLTYPSLFKAY-AQLGL-----ARDGAQLHGRVVKQGL----EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 87 ~--~~~~~~l~~~~-~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
. .......++.. ..... .+.|.+.++.....+. ..++.....++....+.|+.+.-..+++......+
T Consensus 121 ~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~ 200 (324)
T PF11838_consen 121 RPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTS 200 (324)
T ss_dssp S--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTST
T ss_pred cccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCC
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCCh--HHHHHHHH---HHHHCCCCCCHHHHHH
Q 046039 155 VVAWNSMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKF--KEALELFR---EMQEQNIKPSEFTMVS 226 (502)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~---~m~~~~~~~~~~~~~~ 226 (502)
......++.+++...+.+...++++....++ ......++..+...+.. +.+.+++. .........+......
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~ 280 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSR 280 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 227 LLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
++..+...-.-++-.+-++.+.+....+.+..-..+-+..
T Consensus 281 ~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~ 320 (324)
T PF11838_consen 281 VIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSL 320 (324)
T ss_dssp HHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHH
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.97 E-value=1.4e+02 Score=26.40 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=12.1
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHc
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDK 180 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 180 (502)
++.....+...|.+.+++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 334444444555555555555544433
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.18 E-value=86 Score=27.44 Aligned_cols=55 Identities=7% Similarity=-0.042 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKN------ESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.++.-|...|++++|.++|+.+...-.. ...+...+..|+.+.|+.++.+.+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555666666666666666666432111 123445555666667777666665433
No 435
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.14 E-value=1.5e+02 Score=26.61 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 046039 360 HYSCMVDALGRAGLLEEA 377 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A 377 (502)
.|..|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666665543
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.94 E-value=57 Score=23.49 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
..|.-.|.+.|+.+.|.+-|+.=..+.|.+..+...|.
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 44666677777777777777777677777666555543
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.44 E-value=16 Score=31.20 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
++.|.....+..|+..|.+++.++|..+..|..-+.++.+..+|+.+..=-++.
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 345666778999999999999999999999999999999999999887643333
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.33 E-value=43 Score=33.20 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=67.4
Q ss_pred HHhcCCHHHHHHHHHhCCCC-C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-P-------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
..+..++..+.++|..-... | -......|.-+|....+.++|.++++++-+.+|.++........+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34667788888877543221 1 133566777888899999999999999999999999888888888899999
Q ss_pred chHHHHHHHHhhhcC
Q 046039 440 FEEAMEERLLMKEVK 454 (502)
Q Consensus 440 ~~~A~~~~~~~~~~~ 454 (502)
-++|+.+.......-
T Consensus 444 Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSE 458 (872)
T ss_pred hHHHHHHHHHHHhhh
Confidence 999999887776543
No 439
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.40 E-value=1.3e+02 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
..+.++..+...|+++.|-++|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566677777778888888877777764
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.35 E-value=1.6e+02 Score=26.35 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHHHCCC
Q 046039 201 KFKEALELFREMQEQNI 217 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~ 217 (502)
+..+|..+|+...+.|.
T Consensus 128 d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 128 DLVKALKYYEKAAKLGN 144 (292)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 56666666666666653
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.18 E-value=23 Score=33.59 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=67.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhc
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYIS-FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRA 371 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 371 (502)
+..+...+.++.|+.++.+.++. .||... |..-..++.+.+++..|+.=+..+++. .|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 44566778899999999999985 565544 444447788889999998877777753 243 33333333455566
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 046039 372 GLLEEAEKLIRSMPS-DPDAIIWGSLLSACR 401 (502)
Q Consensus 372 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 401 (502)
+.+.+|...|+.... .|+-.-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 677777777776654 376665555555553
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.07 E-value=1.5e+02 Score=28.08 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-------h-cCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 396 LLSACRKHGNIEMAKQAAKQII-------E-LDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~-------~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|+...+-.|++..|+++++.+- . ..+-+.++++.+|-+|.-.+++.+|.+.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666665555431 0 12234555666666666666666666655554
No 443
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.91 E-value=97 Score=23.63 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 205 ALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
..+-+..+..-++.|++.....-+++|.+.+|+..|..+++-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344445555567777777777777777777777777777766654
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.65 E-value=1.4e+02 Score=26.67 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=11.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
++..+...|++-++.+.+.+++.+.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444555555555544444433
No 445
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.97 E-value=65 Score=24.60 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 046039 409 AKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 409 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
..++|..|.. +.-..+.+|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777765 445667788888888888899999988876
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.78 E-value=60 Score=28.43 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=7.9
Q ss_pred HHhcCCCHHHHHHHHHHh
Q 046039 331 ACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~ 348 (502)
-|...|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444443
No 447
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.37 E-value=17 Score=27.85 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHhHhcCCCCCC
Q 046039 66 STPRNAILLFIDMLVTSPIQPQ 87 (502)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~p~ 87 (502)
|.-..|..+|+.|++. |.+||
T Consensus 109 gsk~DaY~VF~kML~~-G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLER-GNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhC-CCCCc
Confidence 3344455555555554 44444
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.34 E-value=2.2e+02 Score=27.29 Aligned_cols=115 Identities=10% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHH---CCC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 203 KEALELFREMQE---QNI-KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 203 ~~a~~~~~~m~~---~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+......++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~------------- 218 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQK------------- 218 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh-------------
Confidence 444445544432 133 44555555554432 67887777777766543212222221111110
Q ss_pred HhcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 279 FNTVPKKGLSCWNSMVFGLAM---NGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
.......+...+..+++++.+ .++.+.|+.++.+|.+.|..|....-..+..++
T Consensus 219 ~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 219 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred hhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 000111122234444555544 478888888888888888776655444444443
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.10 E-value=2.5e+02 Score=28.97 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHhCCChHHHHHHHHHHHHCC
Q 046039 196 YVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~ 216 (502)
-.-.+++.+|...-+.|.+..
T Consensus 376 sVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 376 SVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred hhhccCHHHHHHHHHHHhccC
Confidence 344567777777777777654
No 450
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.58 E-value=18 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 196 YVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNA 230 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 230 (502)
....|.-..|-.+|+.|++.|-+||. +..|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677899999999999988884 5566554
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.43 E-value=1e+02 Score=24.31 Aligned_cols=60 Identities=5% Similarity=0.038 Sum_probs=43.6
Q ss_pred HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 77 DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 77 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
.+.+. |++++.. -..++..+...++.-.|.++++.+.+.++..+..|--.-++.+...|-
T Consensus 11 ~lk~~-glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEA-GLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHc-CCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33344 7666543 356777788888889999999999998887777666666677777764
No 452
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.39 E-value=2e+02 Score=26.45 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHH
Q 046039 273 ERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH---SGKVNQAKDYFT 346 (502)
Q Consensus 273 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~ 346 (502)
+.-+.+++++.+.+ ...+..++..+.+..+.++..+.++++..... -+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34445555554433 34666677777888888888888988888632 256666666665443 335777777777
Q ss_pred HhhhhcCCCC---------Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 347 LMTETYKIKP---------SI-------KHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 347 ~~~~~~~~~~---------~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
+......... .. .++..+...+..+|..+.|..+++.+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 7654221111 11 122233334457888898888887765
No 453
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.36 E-value=1.9e+02 Score=26.45 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHhcCCHHHHHHHHHhCCC------CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 367 ALGRAGLLEEAEKLIRSMPS------DPDAIIW--GSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
...+.++.++|.++++++.. .|+...| ...+.++...|+..++.+.++...+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33445566666666666543 2444443 2344455566666666666666554
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.89 E-value=87 Score=29.34 Aligned_cols=92 Identities=11% Similarity=-0.058 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------C-CCcc
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSD-----PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD-------K-NESC 425 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p-~~~~ 425 (502)
..+..+...|..+|+++.|.+.|-++..- .....|..++..-...|+|........++.+.- + -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34566777888888888888888776531 233355566666666777777777776665420 0 0122
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
....-+.+....+++..|.+.|-..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444455566777777765444
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.21 E-value=46 Score=21.89 Aligned_cols=49 Identities=6% Similarity=0.012 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 183 SRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA 232 (502)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 232 (502)
.+....++.++..+++-.-.+.++..+.++.+.| ..+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666 344555544444443
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.14 E-value=37 Score=30.29 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMV 225 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (502)
-|+..|....+.|+.++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36688888888888888888888888888654444443
No 457
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.61 E-value=34 Score=30.55 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=34.5
Q ss_pred CCCCCcc-cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHH
Q 046039 83 PIQPQRL-TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNT 128 (502)
Q Consensus 83 ~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 128 (502)
.+.|+.. .|+..|+...+.||+++|+.++++..+.|..--..+|-.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3445554 467889999999999999999999999987654455443
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.50 E-value=2e+02 Score=27.29 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-----------CCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 259 VTAIIDMYCKCGCPERALQVFNTVPK-----------KGLSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
...|++.++-.|++..|+++++.+.- ..+.++-.++-+|...+++.+|++.|....-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999999886642 1344677788888999999999999987764
No 459
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.32 E-value=50 Score=21.40 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=11.2
Q ss_pred HHHHHHHhccCchHHHHHHHHHHH
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
..++.++...|++++|.+++..+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555544443
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.93 E-value=2.8e+02 Score=27.55 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=42.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCchHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA-KLGAIRQGEWIHNFLVTNC---FELNTIVVTAIIDMYCK 268 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 268 (502)
|..+.+.|-+..|+++.+.+.+.....|+.....+|..|+ +..+++=.+++++.....+ .-|+-..-.+|...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445566777777777777777654446666666666664 4455555555555553322 22333333344444444
Q ss_pred cC
Q 046039 269 CG 270 (502)
Q Consensus 269 ~g 270 (502)
..
T Consensus 429 ~~ 430 (665)
T KOG2422|consen 429 KN 430 (665)
T ss_pred cC
Confidence 43
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.90 E-value=1.7e+02 Score=30.71 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=79.7
Q ss_pred HHHHHHHHHhCCCCChH----HHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 5 KKIHAHLIKTGLAKDPI----AASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 5 ~~i~~~~~~~g~~p~~~----~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
|.+...+.+.|.+--.. .=..-...+ ..+|+++.|++.-.++ .+..+|..|.....++|+.+-|.-.|+....
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tRF~La-Le~gnle~ale~akkl--dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTRFELA-LECGNLEVALEAAKKL--DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchheeee-hhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 45566666666442111 111223334 5667777777766665 3455677787777777887777777776653
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHH
Q 046039 81 TSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNS 160 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 160 (502)
|..|--.|.-.|+.++..++.+....+. |.... .....-.|+.++-..+++....-| ..|
T Consensus 701 ----------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~n~g~~~--lay-- 760 (1202)
T KOG0292|consen 701 ----------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ---FQNALYLGDVKERVKILENGGQLP--LAY-- 760 (1202)
T ss_pred ----------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHHhcCccc--HHH--
Confidence 2233333444566666555554443321 22211 111123566777667766554211 011
Q ss_pred HHHHHHhcCCHHHHHHHHHcc
Q 046039 161 MIIGLAKCGEIDESRRLFDKM 181 (502)
Q Consensus 161 l~~~~~~~~~~~~a~~~~~~~ 181 (502)
......|.-++|.++.++.
T Consensus 761 --lta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 761 --LTAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred --HHHhhcCcHHHHHHHHHhh
Confidence 1123356666777776666
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.43 E-value=1.2e+02 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046039 340 QAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRS 383 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (502)
.+.++|+.|..+ ++-. ....|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 667777777665 4433 355666666777777777777777653
No 463
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.23 E-value=2.6e+02 Score=26.83 Aligned_cols=333 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcC
Q 046039 23 ASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLG 102 (502)
Q Consensus 23 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 102 (502)
.|-++..| ...|+..+|-+..+.+. .+.+.....-+++...+.-..|..+.-...++ +...+..+-..+.+++.+.+
T Consensus 217 In~~l~ey-v~~getrea~rciR~L~-vsffhhe~vkralv~ame~~~ae~l~l~llke-~~e~glissSq~~kGfsr~~ 293 (645)
T KOG0403|consen 217 INGNLIEY-VEIGETREACRCIRELG-VSFFHHEGVKRALVDAMEDALAEGLTLKLLKE-GREEGLISSSQMGKGFSRKG 293 (645)
T ss_pred HHHHHHHH-HHcccHHHHHHHHHHhC-CCchhhHHHHHHHHHHHhhhhcccceeccchh-hhhhcchhhhccccCchhhc
Q ss_pred --------CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHH
Q 046039 103 --------LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDES 174 (502)
Q Consensus 103 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 174 (502)
+...|...++.+.-..+.-+..--+++-..-...|+.+....+=+.+. .+|+-|...|+..+.
T Consensus 294 ~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~---------~IIqEYFlsgDt~Ev 364 (645)
T KOG0403|consen 294 GSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLT---------PIIQEYFLSGDTPEV 364 (645)
T ss_pred cccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhH---------HHHHHHHhcCChHHH
Q ss_pred HHHHHccCCC--ChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----chHHHHHHHHHH
Q 046039 175 RRLFDKMVSR--NTVSWNSMISGYVRNVK-FKEALELFREMQEQNIKPSEFTMVSLLNACAKLG----AIRQGEWIHNFL 247 (502)
Q Consensus 175 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~ 247 (502)
.+.++.+.-| ++...-.++......++ -.+.-.+|-.-+...+-++...-......+-... +.-.|.+.+...
T Consensus 365 i~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalF 444 (645)
T KOG0403|consen 365 IRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALF 444 (645)
T ss_pred HHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHH
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------------------------CCCcchHHHHHHHHHhcCC
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP-------------------------KKGLSCWNSMVFGLAMNGY 302 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~ 302 (502)
+...+.-+.-.-..+=....+..-...+.+.++... +.-..-...|+.-|...|+
T Consensus 445 lARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~Gd 524 (645)
T KOG0403|consen 445 LARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGD 524 (645)
T ss_pred HHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccc
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 303 ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 303 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
..+|...++++--- .-.....+..++.+..+.|+-...+.+++..... ...|-+.+-.+|.|..+
T Consensus 525 isEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 525 ISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFERVYD 589 (645)
T ss_pred hHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhhhhhc
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.86 E-value=5.6 Score=35.77 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=55.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEE
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLI 464 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 464 (502)
...|.++.|++.|..+++++|....+|..-+.++.+++++..|++-.....+-+.+...++-|-
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 4578899999999999999999999999999999999999999998888887777666555554
No 465
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=47.59 E-value=2.6e+02 Score=26.77 Aligned_cols=191 Identities=9% Similarity=-0.058 Sum_probs=79.8
Q ss_pred HHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC
Q 046039 175 RRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (502)
..+.+.+..++..+....+.++...+...-.- .+..+.+. ++.......+.++...+. + +...+..+.+ .+
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~-~L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~ 159 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP-WLEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HE 159 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH-HHHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CC
Confidence 33344444444445555555555555443332 23333322 222333333444443321 1 2222222222 33
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 334 (502)
+..+-..-+.++...+..+..-.+..-....+...-..-+.+....|. ..|...+...... ++......+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHh
Confidence 444444445555554443333332222333444455555555555555 4455444442221 111121222222222
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
. ..+++...+..+.+. +. +-...+.++.+.|+...+.-+.+.+.
T Consensus 236 ~-~~~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 236 A-GGPDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred C-CchhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 2 223555555554432 11 33445556666666665555555554
No 466
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.46 E-value=63 Score=19.60 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=17.6
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPSEFTMVSLL 228 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 228 (502)
.+.|-..++...+++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555666665555555555555444
No 467
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.20 E-value=2.3e+02 Score=25.89 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCCCCcchH
Q 046039 407 EMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~ 427 (502)
..|.+.+.++.+.+|--|...
T Consensus 379 ~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHH
Confidence 357777788888887766543
No 468
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.17 E-value=2.3e+02 Score=25.88 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD-PDAI---IWGSLLSACRKHGNIEMAKQAAKQI 416 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~ 416 (502)
|..+..+.|+..+|.+.|+.+.++ |-.. +...|+.+|....-+.....++-+-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555555554433 2111 2234555555444444444444333
No 469
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=46.79 E-value=55 Score=18.73 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+|..|+..-...++++.|.+=|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566677777777888888887777776
No 470
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.49 E-value=48 Score=21.48 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhh
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMT 349 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~ 349 (502)
..++.++...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555555443
No 471
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.49 E-value=3.9e+02 Score=28.49 Aligned_cols=193 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHH---cCCCCchhHHHHHHHHHHhcCCh--HHHHHHHhcCCCCCcc----------
Q 046039 224 MVSLLNACAKLGAIRQGEWIHNFLVT---NCFELNTIVVTAIIDMYCKCGCP--ERALQVFNTVPKKGLS---------- 288 (502)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~---------- 288 (502)
|..|+..|...|+.++|.+++.++.+ .....-...+..++......+.. +-++++-....+.++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC------------HHH--HHHHHHHh
Q 046039 289 ------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK------------VNQ--AKDYFTLM 348 (502)
Q Consensus 289 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------------~~~--a~~~~~~~ 348 (502)
.=..-+-.|......+-++..++.+....-.++....+.++..|...-+ .+. =...+...
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred hhhcCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 349 TETYKIKP--------SIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 349 ~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.....+.| ....|....-.+.+.|+.++|..++-... ++++.|........+.+
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L------------------~d~~~A~~Yc~~~y~~~ 728 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL------------------DDIDAAESYCLPQYESD 728 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh------------------cchhHHHHHHHHhccCC
Q ss_pred CCCcchHHHHHHHH
Q 046039 421 KNESCGYVLMSNLY 434 (502)
Q Consensus 421 p~~~~~~~~l~~~~ 434 (502)
+.+...|..+..+|
T Consensus 729 ~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 729 KTNKEIYLTLLRIY 742 (877)
T ss_pred CcccHHHHHHHHHH
No 472
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=44.81 E-value=25 Score=26.40 Aligned_cols=28 Identities=46% Similarity=0.853 Sum_probs=22.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCchHHHHHHH
Q 046039 460 GCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLN 491 (502)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 491 (502)
|.+|++. +.++++..+||+...++..+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~ 29 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKE 29 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHH
Confidence 5678877 899999999999866655443
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.05 E-value=52 Score=29.46 Aligned_cols=69 Identities=10% Similarity=-0.018 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL-MSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.|+..|...+.--.+.|-+.+...+|.++++..|.|+..|.. -..-|...++++.+..+|....+.+.+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 477788888877778889999999999999999999988766 344466778888888888777665543
No 474
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.65 E-value=3.1e+02 Score=26.17 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.1
Q ss_pred HhCCChhHHHHHHh
Q 046039 134 ANCGFLSEARLMFD 147 (502)
Q Consensus 134 ~~~g~~~~a~~~~~ 147 (502)
+..|+.+.+..+++
T Consensus 76 ~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 76 VEEGDVKAVEELLD 89 (413)
T ss_pred HHCCCHHHHHHHHH
Confidence 34444444444443
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.32 E-value=2.7e+02 Score=25.44 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
........|++.|+.+.|.+.+...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444555666666665555543
No 476
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.78 E-value=1.1e+02 Score=22.22 Aligned_cols=43 Identities=16% Similarity=-0.005 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 408 MAKQAAKQIIELD-KNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 408 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.-.+.+++....+ +-.|..+..|+..|.+.|+-+.|.+-|+.=
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 3344455554433 566788999999999999999999877763
No 477
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.74 E-value=2.1e+02 Score=24.45 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHhhhhc---CCCCC--hhHHHHHHHHHHhcCCHH-------HHHHHHHhCCCC---C-----CHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETY---KIKPS--IKHYSCMVDALGRAGLLE-------EAEKLIRSMPSD---P-----DAIIWG 394 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~---~-----~~~~~~ 394 (502)
...++.|++.+..+.-.. +-++. ...+..+...|...|+.+ .|.+.|.+.... | +....-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 345555555544433211 22333 233444555666667644 344444433221 1 233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.++....+.|++++|.+.|.+++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 67778889999999999999998744
No 478
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.14 E-value=3.1e+02 Score=25.83 Aligned_cols=27 Identities=11% Similarity=-0.309 Sum_probs=16.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH
Q 046039 296 GLAMNGYENEAIKLFSGLQSSNLKPDY 322 (502)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~~~~~p~~ 322 (502)
.+.+.+++..|..+|.++.+..++|..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 455566666666666666665444443
No 479
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.76 E-value=3.4e+02 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
-...+.++...|+...+.-+.+
T Consensus 255 r~~a~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 255 RREALRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred HHHHHHHHHHcCCcchHHHHHH
Confidence 3344444555555444433333
No 480
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.59 E-value=1.8e+02 Score=22.92 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc-CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKL-GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566777665433 344455443 45778889999998887766766666666667666643
No 481
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=40.12 E-value=1.9e+02 Score=22.88 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHcc-CCCChhhHHHHHHHHHhCCC-h
Q 046039 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKM-VSRNTVSWNSMISGYVRNVK-F 202 (502)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~ 202 (502)
..|.++......+++.....+++.+.. +.. ... ...+..+|..++.+..+..- -
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~----------l~~--------------~~~~~~~~~ssf~~if~SlsnSsSaK 96 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHF----------LNT--------------DNIIGWLDNSSFHIIFKSLSNSSSAK 96 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHH----------hhH--------------HHHhhhcccchHHHHHHHHccChHHH
Confidence 346677766777777777777666520 000 000 12456678888888866655 4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
-.+..+|.-|.+.+.++++.-|..++.++.+...
T Consensus 97 ~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 97 LTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 5577788888887889999999999988876533
No 482
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.60 E-value=3e+02 Score=30.36 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=83.6
Q ss_pred HHHhcCCCHHHHHH------HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CC-CHHHH
Q 046039 330 TACNHSGKVNQAKD------YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DP-DAIIW 393 (502)
Q Consensus 330 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~ 393 (502)
..+...|.+.++.+ ++...... --++....|..|...+-+.|+.++|+.+-.+..- .| +...|
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 34445566666665 55533321 1234567888899999999999999988665421 13 34467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIEL--------DKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
..+...+...++...|...+.+++.+ .|+-......+..++...+.++.|+++.+.+..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77777777888999999999888762 233334455666666667899999999998876
No 483
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.48 E-value=3.4e+02 Score=27.42 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 046039 206 LELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP 283 (502)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (502)
...++.++.+-...+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.+.|+...+..+-..+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455554443334555566666777777777777776665554422 12334455556667777666555555443
No 484
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=39.38 E-value=1.3e+02 Score=22.38 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCcchH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD-----PDAIIWGSLLSACRKHG-----------NIEMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~ 427 (502)
....+.+.|+.-+|+++.+++... +.......-+..|.+.. -.-.+++.|.+...+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 046039 428 VLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
..|+.-+....-++++..--++
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
No 485
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=2.7e+02 Score=26.33 Aligned_cols=136 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-------SIKHYSCMVDALGRAGLLEEAEKLIRSMPS------- 386 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 386 (502)
+...+..++--.....++.+|..+-+.......+.. ...+|-.+-..|...|+...-..++.....
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 387 -DPDAIIWGSLLSACRKHGNIEMAKQAAKQII----ELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 387 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.......+.|+..|...+.++.|.....+.. ..+-.-....+.++.+..-++++..|.+.+-....+.++
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
No 486
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.05 E-value=1.4e+02 Score=21.22 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=11.4
Q ss_pred HHHhcCCCHHHHHHHHHHhhh
Q 046039 330 TACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~ 350 (502)
......|++++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334445666666666555543
No 487
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.82 E-value=2.1e+02 Score=23.23 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (502)
+....+-+.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 488
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.45 E-value=3.1e+02 Score=27.85 Aligned_cols=86 Identities=9% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHHHHHhCCChhHHHHHHhhcCCC--CC---eeeHHHHHHHHHhcCCHH------HHHHHHHcc-CCCChhhHHHHHHH
Q 046039 128 TIIYMYANCGFLSEARLMFDEVDTE--FD---VVAWNSMIIGLAKCGEID------ESRRLFDKM-VSRNTVSWNSMISG 195 (502)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~------~a~~~~~~~-~~~~~~~~~~l~~~ 195 (502)
+|+.+|...|++-.+.++++.+... .+ ...+|..++...+.|.++ .+.+.++.. ..-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6778888888888888888776542 11 234666666666666553 233333333 33456666666655
Q ss_pred HHhCCChHHHHHHHHHHH
Q 046039 196 YVRNVKFKEALELFREMQ 213 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~ 213 (502)
....-+..-.+-++.+++
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 544333333333444443
No 489
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.42 E-value=2.3e+02 Score=23.58 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCC--------------CchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 227 LLNACAKLGAIRQGEWIHNFLVTNCFE--------------LNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
++..|.+..++.++.+++..+.+..+. +--.+.|.....+.+.|..+.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455555566666665555543221 122334444455555555555555554
No 490
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.35 E-value=50 Score=29.50 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=34.0
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
..+.|+.++|..+|+...+. .|+ +.....+.......+++-+|-+.|-++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 34789999999999998753 343 4444444444445566777777776655
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.25 E-value=1.1e+02 Score=22.70 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS 140 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 140 (502)
.++..+...+..-.|.++++.+.+.++..+..|....++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555555666778888888887776667766666667777776543
No 492
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.94 E-value=3.6e+02 Score=25.56 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=38.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCchHHHHHHHHHHHHc
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEF--TMVSLLNACA--KLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 250 (502)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999998886 555554 3444445443 345677888888877654
No 493
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=37.84 E-value=1.5e+02 Score=22.76 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=29.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
.+...-+.+.|.++|+++++..|++...+..|+..+...
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 444555779999999999999999999988888766543
No 494
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=36.83 E-value=48 Score=31.04 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 443 (502)
|..+|.+.++++.|+...-+-+-++|..+.-+..-+.++.+..+|.+|
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEA 281 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555445554443333333333333333333
No 495
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.27 E-value=3e+02 Score=24.11 Aligned_cols=69 Identities=14% Similarity=0.024 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
.+..+..++...|++-++++.-.++... | ++..|..-..+....-+.++|..-|..+++++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 3444566777888888888887777653 4 6667877888888888999999999999999997554433
No 496
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.14 E-value=3.3e+02 Score=24.60 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=11.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
.+..+...|++..|++++.+..+
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555555555554443
No 497
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.08 E-value=4e+02 Score=25.32 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=36.0
Q ss_pred CChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046039 184 RNTVSWNSMISGYVR---NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG 235 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 235 (502)
++...+..+++++.+ -.+.+.|+-++-+|.+.|-.|....-..++-++-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 455566667777765 4679999999999999986566555555555554444
No 498
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.74 E-value=3.5e+02 Score=29.90 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcC------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYK------IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---------- 387 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 387 (502)
.|..+...+...++...|...+.+.....+ -+|...+++.+-..+...++++.|.+.++.+...
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence 344444334444455555554444433211 1233444454545555567777777777665321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+...++..+...+...+++..|....+....
T Consensus 1097 ~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 3455677777777777777777776666543
No 499
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.59 E-value=1.3e+02 Score=22.68 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 046039 92 PSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS 140 (502)
Q Consensus 92 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 140 (502)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 3566666677778889999999998888877777666777777777543
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.47 E-value=3.5e+02 Score=24.47 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHcCC
Q 046039 185 NTVSWNSMISGYVR---NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA-----IRQGEWIHNFLVTNCF 252 (502)
Q Consensus 185 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 252 (502)
+...+-.+++++.+ -.+++.|+-++..|++.|-.|....-..++-+.-..|. ...|...++.....|.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34444456777765 46799999999999999977777666666666665553 2233444444444443
Done!