Query 046039
Match_columns 502
No_of_seqs 625 out of 2959
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 14:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.3E-41 1.8E-45 335.9 32.7 427 18-453 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-38 4.7E-43 318.4 34.1 427 2-435 101-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-30 2.3E-34 241.1 38.6 373 59-439 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.6E-30 2.9E-34 240.5 38.4 373 94-498 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1E-27 3.4E-32 230.0 21.3 187 53-268 27-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 2.3E-26 7.7E-31 225.5 30.1 393 54-455 8-480 (514)
7 4g26_A Pentatricopeptide repea 100.0 1.8E-27 6.2E-32 228.1 19.9 201 4-234 9-223 (501)
8 2gw1_A Mitochondrial precursor 99.9 3.1E-25 1.1E-29 217.4 27.0 400 24-431 10-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.4E-24 4.7E-29 214.0 31.0 394 53-455 26-493 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.9E-24 1.7E-28 205.3 32.4 330 87-449 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 5.5E-24 1.9E-28 204.9 29.9 378 38-443 9-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4.2E-27 200.1 27.8 398 21-430 26-502 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 9.8E-22 3.3E-26 183.0 31.8 326 122-500 2-356 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.6E-21 1.2E-25 179.1 30.6 315 88-437 3-353 (359)
15 3hym_B Cell division cycle pro 99.9 1.4E-20 4.7E-25 173.0 28.3 278 154-434 21-314 (330)
16 2xm6_A Protein corresponding t 99.9 4.1E-19 1.4E-23 172.5 37.2 376 41-436 27-452 (490)
17 3hym_B Cell division cycle pro 99.9 6.5E-20 2.2E-24 168.5 28.1 267 184-455 20-301 (330)
18 2xm6_A Protein corresponding t 99.9 1.7E-18 5.9E-23 168.1 39.0 363 71-455 26-434 (490)
19 1fch_A Peroxisomal targeting s 99.9 2.3E-20 7.7E-25 174.5 23.6 298 133-450 35-356 (368)
20 2ooe_A Cleavage stimulation fa 99.8 1.1E-17 3.9E-22 164.0 37.2 409 19-455 12-494 (530)
21 4eqf_A PEX5-related protein; a 99.8 1.6E-19 5.6E-24 168.5 21.0 258 188-449 67-352 (365)
22 1b89_A Protein (clathrin heavy 99.8 2.9E-19 9.9E-24 163.4 20.8 279 33-343 15-303 (449)
23 1fch_A Peroxisomal targeting s 99.8 1.5E-19 5.2E-24 168.9 18.8 300 165-501 35-347 (368)
24 4g1t_A Interferon-induced prot 99.8 3.6E-18 1.2E-22 165.3 28.9 388 52-464 51-470 (472)
25 1xi4_A Clathrin heavy chain; a 99.8 7.7E-17 2.6E-21 164.2 39.1 392 6-446 969-1377(1630)
26 3cv0_A Peroxisome targeting si 99.8 4.2E-19 1.4E-23 162.9 20.3 258 189-451 24-313 (327)
27 2ooe_A Cleavage stimulation fa 99.8 2.5E-17 8.5E-22 161.6 33.6 396 2-422 29-495 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.8E-22 149.9 27.7 268 164-445 8-286 (291)
29 1xi4_A Clathrin heavy chain; a 99.8 4.8E-16 1.6E-20 158.4 38.6 349 55-448 988-1340(1630)
30 3mkr_A Coatomer subunit epsilo 99.8 3.1E-18 1.1E-22 153.5 20.2 247 193-454 6-265 (291)
31 1b89_A Protein (clathrin heavy 99.8 3.2E-18 1.1E-22 156.5 20.1 369 2-414 20-412 (449)
32 4eqf_A PEX5-related protein; a 99.8 3.3E-18 1.1E-22 159.6 19.4 272 51-348 64-353 (365)
33 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.9E-21 154.7 29.6 382 19-431 50-471 (472)
34 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.1E-22 153.1 17.8 261 156-421 22-317 (327)
35 3uq3_A Heat shock protein STI1 99.7 9E-17 3.1E-21 141.8 18.8 223 187-453 6-236 (258)
36 3uq3_A Heat shock protein STI1 99.7 1.9E-16 6.6E-21 139.7 20.1 191 223-456 7-205 (258)
37 2pl2_A Hypothetical conserved 99.7 1.5E-16 5E-21 136.3 17.9 196 253-451 2-212 (217)
38 3u4t_A TPR repeat-containing p 99.7 4E-16 1.4E-20 138.9 19.2 244 191-438 8-269 (272)
39 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-15 3.9E-20 145.9 23.1 376 57-452 8-420 (452)
40 3e4b_A ALGK; tetratricopeptide 99.7 4.9E-16 1.7E-20 148.5 20.0 365 32-418 14-420 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.3E-16 2.1E-20 137.8 19.3 241 198-447 17-269 (275)
42 1ouv_A Conserved hypothetical 99.7 1.7E-14 5.9E-19 128.4 26.3 225 185-455 5-253 (273)
43 2h6f_A Protein farnesyltransfe 99.7 3E-15 1E-19 138.6 21.0 247 186-437 97-366 (382)
44 3sf4_A G-protein-signaling mod 99.7 8.6E-16 2.9E-20 145.3 17.3 264 188-452 11-335 (406)
45 1ouv_A Conserved hypothetical 99.7 3.3E-14 1.1E-18 126.6 25.0 233 153-425 4-257 (273)
46 4a1s_A PINS, partner of inscut 99.7 1.5E-15 5.3E-20 143.9 15.9 264 189-453 51-372 (411)
47 2q7f_A YRRB protein; TPR, prot 99.7 2.3E-15 7.7E-20 131.5 15.4 194 257-453 24-222 (243)
48 2pl2_A Hypothetical conserved 99.6 7.3E-15 2.5E-19 125.7 18.0 207 184-416 3-211 (217)
49 3spa_A Mtrpol, DNA-directed RN 99.6 5.3E-17 1.8E-21 160.5 4.4 149 19-169 126-286 (1134)
50 3spa_A Mtrpol, DNA-directed RN 99.6 2.6E-16 8.9E-21 155.6 9.0 123 156-278 128-258 (1134)
51 3u4t_A TPR repeat-containing p 99.6 1.5E-14 5.1E-19 128.7 19.7 230 222-455 4-252 (272)
52 2ho1_A Type 4 fimbrial biogene 99.6 3.8E-14 1.3E-18 124.5 22.0 205 188-427 39-246 (252)
53 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-14 7.8E-19 125.9 19.7 198 256-455 37-240 (252)
54 3ro2_A PINS homolog, G-protein 99.6 4E-15 1.4E-19 136.6 15.2 265 189-454 8-333 (338)
55 2q7f_A YRRB protein; TPR, prot 99.6 4.2E-15 1.4E-19 129.8 14.3 216 185-436 22-239 (243)
56 3vtx_A MAMA; tetratricopeptide 99.6 2.3E-14 7.8E-19 119.3 18.1 167 286-455 4-172 (184)
57 2vq2_A PILW, putative fimbrial 99.6 3.6E-14 1.2E-18 122.1 19.9 195 257-453 9-211 (225)
58 2h6f_A Protein farnesyltransfe 99.6 1.7E-14 6E-19 133.5 18.8 227 221-452 97-347 (382)
59 2vq2_A PILW, putative fimbrial 99.6 1E-13 3.4E-18 119.3 21.9 210 186-430 8-222 (225)
60 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.5E-15 2.6E-19 130.8 14.0 244 64-345 17-269 (275)
61 4e6h_A MRNA 3'-END-processing 99.6 9.1E-12 3.1E-16 123.0 35.4 413 8-426 55-577 (679)
62 4abn_A Tetratricopeptide repea 99.6 1.2E-14 4.2E-19 139.7 14.5 192 255-450 101-318 (474)
63 3sf4_A G-protein-signaling mod 99.6 1.7E-14 5.7E-19 136.4 14.7 295 122-442 8-365 (406)
64 4a1s_A PINS, partner of inscut 99.5 9E-14 3.1E-18 131.7 16.1 267 125-422 50-375 (411)
65 2ond_A Cleavage stimulation fa 99.5 3.4E-12 1.2E-16 115.5 25.4 220 203-426 33-277 (308)
66 3ulq_A Response regulator aspa 99.5 2.4E-13 8.3E-18 127.4 17.6 227 192-418 109-367 (383)
67 3nf1_A KLC 1, kinesin light ch 99.5 4.8E-14 1.6E-18 128.0 12.2 243 186-452 27-306 (311)
68 3vtx_A MAMA; tetratricopeptide 99.5 2.1E-13 7E-18 113.4 14.9 167 255-424 4-175 (184)
69 3ro2_A PINS homolog, G-protein 99.5 6.2E-13 2.1E-17 121.9 18.6 235 188-422 45-335 (338)
70 4i17_A Hypothetical protein; T 99.5 3.4E-13 1.2E-17 116.4 15.7 180 289-496 9-226 (228)
71 3ulq_A Response regulator aspa 99.5 2.6E-13 9E-18 127.1 16.2 226 227-453 109-368 (383)
72 4gyw_A UDP-N-acetylglucosamine 99.5 9.3E-13 3.2E-17 131.6 18.8 162 288-452 10-173 (723)
73 1hz4_A MALT regulatory protein 99.5 2E-11 6.9E-16 113.8 26.7 263 191-453 19-322 (373)
74 2ond_A Cleavage stimulation fa 99.5 1.2E-11 4.2E-16 111.9 24.3 214 238-456 33-273 (308)
75 4abn_A Tetratricopeptide repea 99.5 6.9E-13 2.4E-17 127.5 16.0 198 272-499 84-307 (474)
76 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.3E-17 108.5 15.3 162 290-454 11-174 (186)
77 3q15_A PSP28, response regulat 99.5 1.2E-11 4.2E-16 115.5 23.5 227 191-418 106-364 (378)
78 4e6h_A MRNA 3'-END-processing 99.5 7.3E-11 2.5E-15 116.6 29.5 403 50-456 64-573 (679)
79 4i17_A Hypothetical protein; T 99.4 9.1E-12 3.1E-16 107.4 18.4 206 218-434 4-224 (228)
80 3q15_A PSP28, response regulat 99.4 3.2E-12 1.1E-16 119.4 14.8 226 226-452 106-364 (378)
81 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-12 7.6E-17 116.9 13.3 212 186-422 69-310 (311)
82 3as5_A MAMA; tetratricopeptide 99.4 3.1E-11 1.1E-15 100.0 18.0 168 256-426 8-180 (186)
83 3qky_A Outer membrane assembly 99.3 6.8E-11 2.3E-15 104.2 17.2 206 255-500 14-248 (261)
84 4ga2_A E3 SUMO-protein ligase 99.3 3.5E-12 1.2E-16 101.7 7.8 119 330-451 5-127 (150)
85 3edt_B KLC 2, kinesin light ch 99.3 2.4E-11 8.3E-16 108.2 14.2 152 198-349 13-196 (283)
86 1qqe_A Vesicular transport pro 99.3 2.8E-11 9.6E-16 108.5 14.2 163 289-451 79-267 (292)
87 3mv2_B Coatomer subunit epsilo 99.3 4E-10 1.4E-14 98.9 20.8 157 290-451 103-280 (310)
88 1hz4_A MALT regulatory protein 99.3 2.4E-09 8.2E-14 99.7 27.6 231 57-314 19-280 (373)
89 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.1E-10 1E-14 97.4 18.5 183 257-456 5-216 (225)
90 1qqe_A Vesicular transport pro 99.3 1.1E-10 3.8E-15 104.6 15.8 214 193-432 44-282 (292)
91 3qky_A Outer membrane assembly 99.2 7.8E-11 2.7E-15 103.8 13.5 205 218-443 12-251 (261)
92 4ga2_A E3 SUMO-protein ligase 99.2 8.3E-12 2.8E-16 99.5 6.3 143 293-439 3-149 (150)
93 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-10 5.9E-15 115.4 16.5 162 186-350 9-173 (723)
94 3edt_B KLC 2, kinesin light ch 99.2 7.3E-10 2.5E-14 98.5 19.1 130 186-315 43-197 (283)
95 3mv2_B Coatomer subunit epsilo 99.2 1.8E-09 6.1E-14 94.8 20.5 181 240-428 85-291 (310)
96 2fo7_A Synthetic consensus TPR 99.2 2.7E-10 9.1E-15 88.7 14.0 128 325-454 4-133 (136)
97 3qou_A Protein YBBN; thioredox 99.2 5E-10 1.7E-14 99.9 14.9 174 274-451 104-282 (287)
98 2uy1_A Cleavage stimulation fa 99.2 5E-08 1.7E-12 93.6 29.8 203 203-418 196-412 (493)
99 2pzi_A Probable serine/threoni 99.2 8.4E-11 2.9E-15 118.2 10.8 169 267-439 402-583 (681)
100 3rjv_A Putative SEL1 repeat pr 99.2 4.3E-09 1.5E-13 89.1 19.2 161 286-455 17-199 (212)
101 4gco_A Protein STI-1; structur 99.2 3.9E-10 1.3E-14 86.6 11.5 94 359-452 14-109 (126)
102 2fo7_A Synthetic consensus TPR 99.1 1.6E-09 5.4E-14 84.2 14.8 132 289-423 3-136 (136)
103 2r5s_A Uncharacterized protein 99.1 7.6E-10 2.6E-14 90.9 12.8 159 290-452 9-172 (176)
104 3gyz_A Chaperone protein IPGC; 99.1 3.1E-10 1.1E-14 89.9 9.8 102 354-455 31-135 (151)
105 2vsy_A XCC0866; transferase, g 99.1 8.7E-10 3E-14 108.9 15.2 160 269-431 2-169 (568)
106 3urz_A Uncharacterized protein 99.1 1.3E-09 4.4E-14 92.2 13.9 183 222-423 5-190 (208)
107 2ifu_A Gamma-SNAP; membrane fu 99.1 1.6E-09 5.6E-14 97.7 14.9 219 199-446 4-254 (307)
108 3qou_A Protein YBBN; thioredox 99.1 2.2E-09 7.6E-14 95.7 15.5 156 319-500 114-271 (287)
109 2vgx_A Chaperone SYCD; alterna 99.1 6.3E-10 2.2E-14 88.2 9.2 98 357-454 20-119 (148)
110 3dra_A Protein farnesyltransfe 99.0 1.2E-07 4E-12 84.2 24.5 228 200-432 47-301 (306)
111 4gco_A Protein STI-1; structur 99.0 2.4E-09 8.2E-14 82.1 11.9 110 323-434 14-125 (126)
112 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.1E-09 1.7E-13 89.7 14.3 185 220-425 3-219 (225)
113 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.5E-09 2.6E-13 87.8 15.2 129 289-423 8-154 (213)
114 3u3w_A Transcriptional activat 99.0 6.8E-08 2.3E-12 86.4 22.1 160 293-452 81-265 (293)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-09 5.3E-14 97.9 11.1 196 233-451 3-222 (307)
116 2vsy_A XCC0866; transferase, g 99.0 5.8E-09 2E-13 102.9 16.0 147 235-385 3-155 (568)
117 2r5s_A Uncharacterized protein 99.0 7.8E-09 2.7E-13 84.7 13.9 129 325-455 9-139 (176)
118 2pzi_A Probable serine/threoni 99.0 1E-08 3.6E-13 103.0 17.5 190 232-426 402-609 (681)
119 3urz_A Uncharacterized protein 99.0 1E-08 3.4E-13 86.6 14.8 127 262-392 60-192 (208)
120 2qfc_A PLCR protein; TPR, HTH, 99.0 1.5E-08 5.2E-13 90.7 16.7 163 290-452 78-265 (293)
121 3upv_A Heat shock protein STI1 99.0 3.3E-09 1.1E-13 81.5 10.1 119 358-496 4-124 (126)
122 2xcb_A PCRH, regulatory protei 99.0 4E-09 1.4E-13 83.0 10.7 98 357-454 17-116 (142)
123 1a17_A Serine/threonine protei 98.9 1.2E-08 4E-13 82.6 13.1 128 323-452 14-145 (166)
124 3dra_A Protein farnesyltransfe 98.9 1E-07 3.5E-12 84.6 19.0 213 236-452 48-286 (306)
125 2lni_A Stress-induced-phosphop 98.9 1.6E-08 5.3E-13 78.3 12.0 117 321-439 15-133 (133)
126 3rjv_A Putative SEL1 repeat pr 98.9 4.3E-08 1.5E-12 83.0 15.5 172 71-252 5-199 (212)
127 2vyi_A SGTA protein; chaperone 98.9 2E-08 6.7E-13 77.4 12.4 119 321-441 11-131 (131)
128 4f3v_A ESX-1 secretion system 98.9 2.2E-08 7.6E-13 86.7 13.6 192 233-430 18-247 (282)
129 4f3v_A ESX-1 secretion system 98.9 4.1E-08 1.4E-12 85.0 15.3 187 198-389 18-240 (282)
130 1na0_A Designed protein CTPR3; 98.9 2.7E-08 9.3E-13 75.8 12.9 115 322-438 9-125 (125)
131 2e2e_A Formate-dependent nitri 98.9 5.8E-09 2E-13 85.6 9.1 117 335-453 23-144 (177)
132 2lni_A Stress-induced-phosphop 98.9 1.9E-08 6.6E-13 77.8 11.7 99 355-453 13-113 (133)
133 2c2l_A CHIP, carboxy terminus 98.9 3.2E-09 1.1E-13 94.3 7.7 187 260-453 8-199 (281)
134 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.5E-08 2.6E-12 81.5 16.0 89 261-350 11-99 (213)
135 3sz7_A HSC70 cochaperone (SGT) 98.8 1.9E-08 6.5E-13 81.3 10.7 109 321-431 10-120 (164)
136 2kck_A TPR repeat; tetratricop 98.8 2.1E-08 7.1E-13 74.9 10.2 100 357-456 5-109 (112)
137 2uy1_A Cleavage stimulation fa 98.8 2.4E-07 8.3E-12 88.8 19.9 357 64-452 6-412 (493)
138 1p5q_A FKBP52, FK506-binding p 98.8 2E-08 7E-13 91.6 11.9 94 358-451 196-292 (336)
139 2vyi_A SGTA protein; chaperone 98.8 3.4E-08 1.2E-12 76.0 11.5 118 357-500 11-130 (131)
140 1hxi_A PEX5, peroxisome target 98.8 1.3E-08 4.6E-13 77.3 8.6 96 360-455 19-116 (121)
141 2vgx_A Chaperone SYCD; alterna 98.8 1E-08 3.5E-13 81.1 7.7 109 321-431 20-130 (148)
142 1na0_A Designed protein CTPR3; 98.8 6.7E-08 2.3E-12 73.6 12.0 96 358-453 9-106 (125)
143 3q7a_A Farnesyltransferase alp 98.8 5.7E-06 1.9E-10 74.2 25.9 232 196-432 64-345 (349)
144 1elw_A TPR1-domain of HOP; HOP 98.8 1.1E-07 3.8E-12 71.6 12.9 92 360-451 6-99 (118)
145 3gyz_A Chaperone protein IPGC; 98.8 1.8E-08 6.3E-13 79.6 8.5 101 322-424 36-138 (151)
146 4gcn_A Protein STI-1; structur 98.8 2.5E-08 8.4E-13 76.6 9.0 94 359-452 9-111 (127)
147 2qfc_A PLCR protein; TPR, HTH, 98.8 3.3E-07 1.1E-11 81.9 17.7 162 257-418 76-265 (293)
148 3q49_B STIP1 homology and U bo 98.8 5.9E-08 2E-12 75.6 11.2 99 356-454 7-107 (137)
149 3rkv_A Putative peptidylprolyl 98.8 5.6E-08 1.9E-12 78.3 10.9 64 390-453 63-126 (162)
150 2dba_A Smooth muscle cell asso 98.8 1.3E-07 4.4E-12 74.6 12.8 93 359-451 29-126 (148)
151 2fbn_A 70 kDa peptidylprolyl i 98.7 6.9E-08 2.4E-12 80.7 11.4 95 359-453 89-186 (198)
152 1elw_A TPR1-domain of HOP; HOP 98.7 1.6E-07 5.4E-12 70.7 12.3 111 322-434 4-116 (118)
153 3u3w_A Transcriptional activat 98.7 2.7E-07 9.3E-12 82.5 15.8 212 7-249 33-265 (293)
154 2fbn_A 70 kDa peptidylprolyl i 98.7 1.3E-08 4.3E-13 85.3 6.5 138 334-499 16-171 (198)
155 3upv_A Heat shock protein STI1 98.7 9.8E-08 3.4E-12 73.1 10.8 112 322-435 4-123 (126)
156 2e2e_A Formate-dependent nitri 98.7 9.1E-08 3.1E-12 78.4 11.3 130 298-430 21-155 (177)
157 3gw4_A Uncharacterized protein 98.7 9.1E-08 3.1E-12 80.2 11.6 153 299-452 4-175 (203)
158 2xcb_A PCRH, regulatory protei 98.7 7.6E-08 2.6E-12 75.5 9.7 109 323-433 19-129 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.7 1.7E-07 5.8E-12 75.6 12.0 99 357-455 10-110 (164)
160 1p5q_A FKBP52, FK506-binding p 98.7 1.1E-07 3.8E-12 86.7 11.4 116 358-499 147-279 (336)
161 2hr2_A Hypothetical protein; a 98.7 9.9E-08 3.4E-12 74.5 9.2 63 391-453 58-131 (159)
162 2dba_A Smooth muscle cell asso 98.7 5.7E-07 1.9E-11 70.8 13.6 113 321-436 27-145 (148)
163 2xev_A YBGF; tetratricopeptide 98.6 1E-07 3.5E-12 73.3 8.3 89 364-452 8-104 (129)
164 3gw4_A Uncharacterized protein 98.6 2.6E-07 8.7E-12 77.4 11.3 115 167-281 4-132 (203)
165 3k9i_A BH0479 protein; putativ 98.6 2.7E-08 9.4E-13 75.1 4.7 82 371-452 3-89 (117)
166 1elr_A TPR2A-domain of HOP; HO 98.6 2.1E-07 7.2E-12 71.5 9.8 96 358-453 4-108 (131)
167 3q49_B STIP1 homology and U bo 98.6 2.6E-07 9E-12 71.8 10.2 113 320-434 7-126 (137)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 4.4E-07 1.5E-11 86.5 13.3 96 358-453 317-415 (457)
169 1a17_A Serine/threonine protei 98.6 1.1E-06 3.8E-11 70.7 13.5 127 289-418 15-145 (166)
170 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.7E-12 83.2 9.1 91 188-280 6-96 (281)
171 1elr_A TPR2A-domain of HOP; HO 98.6 3.4E-07 1.2E-11 70.3 9.5 112 323-437 5-125 (131)
172 3dss_A Geranylgeranyl transfer 98.5 1.2E-05 4.2E-10 71.7 19.9 191 237-432 90-317 (331)
173 1wao_1 Serine/threonine protei 98.5 1.8E-07 6.3E-12 89.5 8.7 119 329-449 13-135 (477)
174 1ihg_A Cyclophilin 40; ppiase 98.5 5.3E-07 1.8E-11 83.1 11.4 124 322-445 223-362 (370)
175 2xev_A YBGF; tetratricopeptide 98.5 1.1E-06 3.9E-11 67.2 11.6 105 327-433 7-119 (129)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 5.7E-07 2E-11 85.7 11.4 95 359-453 269-380 (457)
177 4b4t_Q 26S proteasome regulato 98.5 1.1E-06 3.8E-11 83.4 13.0 163 290-452 58-244 (434)
178 2if4_A ATFKBP42; FKBP-like, al 98.5 2.1E-07 7.3E-12 84.9 7.5 147 289-455 181-330 (338)
179 3rkv_A Putative peptidylprolyl 98.5 4.1E-07 1.4E-11 73.2 8.4 80 357-436 62-144 (162)
180 3q7a_A Farnesyltransferase alp 98.5 0.00024 8.1E-09 63.7 26.9 174 63-271 65-257 (349)
181 1hxi_A PEX5, peroxisome target 98.5 6.8E-07 2.3E-11 67.7 8.8 98 325-424 20-119 (121)
182 3ro3_A PINS homolog, G-protein 98.5 6.3E-07 2.2E-11 71.7 9.2 129 324-452 11-157 (164)
183 4gcn_A Protein STI-1; structur 98.5 9.9E-07 3.4E-11 67.5 9.7 97 324-422 10-115 (127)
184 1ihg_A Cyclophilin 40; ppiase 98.5 1E-06 3.4E-11 81.3 11.3 120 289-410 225-361 (370)
185 2kck_A TPR repeat; tetratricop 98.5 7.3E-07 2.5E-11 66.2 8.7 100 323-424 7-111 (112)
186 2l6j_A TPR repeat-containing p 98.4 1.1E-07 3.7E-12 70.9 3.4 94 357-450 3-104 (111)
187 3k9i_A BH0479 protein; putativ 98.4 2.4E-07 8.2E-12 69.8 5.3 96 335-431 3-102 (117)
188 2l6j_A TPR repeat-containing p 98.4 2.8E-06 9.6E-11 63.0 10.9 66 389-454 3-68 (111)
189 3dss_A Geranylgeranyl transfer 98.4 3.7E-05 1.3E-09 68.6 19.5 179 272-453 90-304 (331)
190 1dce_A Protein (RAB geranylger 98.4 1.5E-05 5.2E-10 77.7 17.8 168 272-442 45-244 (567)
191 3ma5_A Tetratricopeptide repea 98.4 1.9E-06 6.6E-11 62.6 8.7 65 389-453 6-70 (100)
192 3n71_A Histone lysine methyltr 98.3 1.9E-06 6.5E-11 81.9 10.1 126 331-456 318-467 (490)
193 3ro3_A PINS homolog, G-protein 98.3 2.8E-06 9.4E-11 67.9 9.1 132 289-420 11-159 (164)
194 4b4t_Q 26S proteasome regulato 98.3 1.3E-05 4.5E-10 75.9 15.0 193 193-385 11-243 (434)
195 1na3_A Designed protein CTPR2; 98.3 3.6E-06 1.2E-10 59.7 8.3 81 358-438 9-91 (91)
196 1na3_A Designed protein CTPR2; 98.3 5.8E-06 2E-10 58.6 9.3 65 389-453 8-72 (91)
197 2if4_A ATFKBP42; FKBP-like, al 98.2 3.3E-06 1.1E-10 76.9 9.5 153 256-425 179-334 (338)
198 3n71_A Histone lysine methyltr 98.2 2.1E-06 7.2E-11 81.6 8.2 116 366-499 317-450 (490)
199 2hr2_A Hypothetical protein; a 98.2 3.6E-06 1.2E-10 65.7 7.9 73 360-432 59-144 (159)
200 2kat_A Uncharacterized protein 98.2 5.6E-06 1.9E-10 61.9 8.5 77 377-453 4-82 (115)
201 1zu2_A Mitochondrial import re 98.2 7.9E-07 2.7E-11 69.3 3.7 86 370-455 14-122 (158)
202 1wao_1 Serine/threonine protei 98.2 5.8E-06 2E-10 79.1 10.2 91 363-453 11-103 (477)
203 3bee_A Putative YFRE protein; 98.1 1.1E-05 3.9E-10 57.2 8.5 69 388-456 4-75 (93)
204 1klx_A Cysteine rich protein B 98.1 2.8E-05 9.4E-10 60.3 10.8 89 364-454 31-127 (138)
205 3qwp_A SET and MYND domain-con 98.1 9.3E-06 3.2E-10 76.0 8.8 117 365-499 294-428 (429)
206 1zu2_A Mitochondrial import re 98.0 7.1E-06 2.4E-10 63.9 4.7 109 336-453 16-147 (158)
207 1dce_A Protein (RAB geranylger 98.0 0.00013 4.4E-09 71.2 14.7 154 300-456 42-224 (567)
208 3qww_A SET and MYND domain-con 97.9 1.1E-05 3.7E-10 75.5 6.2 104 370-491 310-431 (433)
209 2kc7_A BFR218_protein; tetratr 97.9 5.5E-05 1.9E-09 54.5 8.5 79 364-450 6-87 (99)
210 3lvg_A Clathrin heavy chain 1; 97.9 3.9E-07 1.3E-11 82.8 -3.8 252 35-308 39-325 (624)
211 2kat_A Uncharacterized protein 97.9 4.7E-05 1.6E-09 56.7 8.0 82 340-423 3-86 (115)
212 1klx_A Cysteine rich protein B 97.9 0.00036 1.2E-08 53.8 13.1 112 301-421 9-128 (138)
213 1pc2_A Mitochondria fission pr 97.7 0.00014 4.7E-09 56.0 7.6 92 337-430 13-111 (152)
214 3ly7_A Transcriptional activat 97.6 0.0016 5.4E-08 58.4 14.4 137 286-424 193-344 (372)
215 2kc7_A BFR218_protein; tetratr 97.6 0.00034 1.2E-08 50.2 8.6 58 397-454 7-65 (99)
216 3ma5_A Tetratricopeptide repea 97.6 0.00016 5.6E-09 52.2 6.6 67 356-422 5-73 (100)
217 3qww_A SET and MYND domain-con 97.5 0.00036 1.2E-08 65.2 8.9 96 334-429 310-426 (433)
218 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00065 2.2E-08 49.3 8.3 75 357-431 4-87 (104)
219 1qsa_A Protein (soluble lytic 97.4 0.12 4E-06 50.5 26.2 123 301-431 228-356 (618)
220 3qwp_A SET and MYND domain-con 97.4 0.00086 3E-08 62.7 10.3 102 329-430 294-416 (429)
221 3u64_A Protein TP_0956; tetrat 97.3 0.00079 2.7E-08 57.7 8.6 87 374-460 179-276 (301)
222 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0022 7.7E-08 46.4 9.7 65 389-453 4-75 (104)
223 1pc2_A Mitochondria fission pr 97.1 0.0027 9.3E-08 48.8 9.0 67 388-454 30-101 (152)
224 1wy6_A Hypothetical protein ST 97.1 0.042 1.5E-06 40.6 14.5 141 297-456 17-157 (172)
225 1nzn_A CGI-135 protein, fissio 97.0 0.0025 8.7E-08 47.0 7.7 94 336-431 15-115 (126)
226 3mkq_A Coatomer beta'-subunit; 97.0 0.094 3.2E-06 53.8 22.6 154 96-281 607-761 (814)
227 3ly7_A Transcriptional activat 97.0 0.022 7.4E-07 51.2 14.8 134 319-456 191-342 (372)
228 3bee_A Putative YFRE protein; 96.9 0.0071 2.4E-07 42.5 8.7 71 355-425 3-78 (93)
229 3mkq_A Coatomer beta'-subunit; 96.6 0.019 6.7E-07 58.9 13.4 45 334-385 664-708 (814)
230 1y8m_A FIS1; mitochondria, unk 96.6 0.066 2.3E-06 40.2 12.1 75 355-429 36-116 (144)
231 1nzn_A CGI-135 protein, fissio 96.5 0.048 1.6E-06 40.3 10.7 65 388-452 33-102 (126)
232 4ady_A RPN2, 26S proteasome re 96.4 0.78 2.7E-05 46.7 22.6 90 22-116 147-258 (963)
233 3o48_A Mitochondria fission 1 96.4 0.024 8.1E-07 42.0 8.7 35 392-426 80-114 (134)
234 3lvg_A Clathrin heavy chain 1; 96.0 0.00011 3.8E-09 67.2 -6.3 240 153-411 52-325 (624)
235 4gns_B Protein CSD3, chitin bi 96.0 0.031 1.1E-06 55.5 10.1 58 394-451 341-398 (754)
236 3mkq_B Coatomer subunit alpha; 96.0 0.42 1.4E-05 37.7 14.5 101 267-385 16-116 (177)
237 3mkq_B Coatomer subunit alpha; 95.9 0.33 1.1E-05 38.3 13.6 129 294-450 12-141 (177)
238 1wy6_A Hypothetical protein ST 95.4 0.57 1.9E-05 34.8 15.9 148 91-253 8-157 (172)
239 4h7y_A Dual specificity protei 95.0 0.076 2.6E-06 40.3 6.7 110 320-431 11-135 (161)
240 4h7y_A Dual specificity protei 95.0 0.11 3.7E-06 39.4 7.5 56 402-457 72-127 (161)
241 3u64_A Protein TP_0956; tetrat 94.7 0.35 1.2E-05 41.6 11.1 82 172-253 180-272 (301)
242 3ffl_A Anaphase-promoting comp 94.7 0.21 7.1E-06 38.7 8.7 28 425-452 123-150 (167)
243 2ff4_A Probable regulatory pro 94.4 0.11 3.6E-06 47.9 7.9 70 392-461 173-247 (388)
244 1v54_E Cytochrome C oxidase po 93.5 0.35 1.2E-05 33.6 6.9 62 303-366 26-87 (109)
245 4ady_A RPN2, 26S proteasome re 93.3 8.1 0.00028 39.6 28.9 16 33-48 242-257 (963)
246 3ffl_A Anaphase-promoting comp 93.0 0.6 2.1E-05 36.2 8.5 25 362-386 126-150 (167)
247 1qsa_A Protein (soluble lytic 92.9 7.6 0.00026 37.9 30.6 48 397-446 388-435 (618)
248 1y8m_A FIS1; mitochondria, unk 92.6 1.6 5.5E-05 32.8 10.0 70 387-456 36-109 (144)
249 3o48_A Mitochondria fission 1 91.9 1.5 5.1E-05 32.5 9.0 67 388-454 38-108 (134)
250 2p58_C Putative type III secre 91.8 1.6 5.5E-05 30.2 8.3 50 165-216 50-99 (116)
251 2uwj_G Type III export protein 91.5 1.5 5.2E-05 30.3 7.8 57 165-224 49-105 (115)
252 4b4t_P 26S proteasome regulato 91.3 5.5 0.00019 37.2 14.7 206 199-417 29-265 (445)
253 3ltm_A Alpha-REP4; protein eng 91.2 5.3 0.00018 32.6 17.8 93 152-249 92-184 (211)
254 4fhn_B Nucleoporin NUP120; pro 91.1 3.8 0.00013 43.7 15.0 82 257-340 900-989 (1139)
255 2y69_E Cytochrome C oxidase su 90.8 0.97 3.3E-05 33.4 6.9 60 305-366 71-130 (152)
256 3lpz_A GET4 (YOR164C homolog); 90.1 9.5 0.00033 33.7 21.6 170 257-452 36-215 (336)
257 4fhn_B Nucleoporin NUP120; pro 89.3 4.5 0.00015 43.2 13.7 123 327-455 817-969 (1139)
258 2ff4_A Probable regulatory pro 88.7 3.4 0.00012 37.8 10.8 70 190-260 175-249 (388)
259 1zbp_A Hypothetical protein VP 88.3 0.62 2.1E-05 39.4 5.0 58 367-424 6-65 (273)
260 4gns_B Protein CSD3, chitin bi 88.0 2.1 7.3E-05 42.7 9.4 124 56-182 252-398 (754)
261 3esl_A Checkpoint serine/threo 86.3 8 0.00027 31.1 10.1 54 404-457 93-148 (202)
262 2wpv_A GET4, UPF0363 protein Y 85.5 18 0.00061 31.6 21.9 165 161-351 39-217 (312)
263 1v54_E Cytochrome C oxidase po 85.0 6 0.0002 27.6 7.5 62 202-264 26-87 (109)
264 1zbp_A Hypothetical protein VP 84.9 11 0.00038 31.9 10.8 119 296-425 6-135 (273)
265 3ltm_A Alpha-REP4; protein eng 83.8 16 0.00054 29.6 18.1 17 122-138 32-48 (211)
266 4b4t_P 26S proteasome regulato 83.7 28 0.00096 32.4 22.9 182 168-351 29-247 (445)
267 3ltj_A Alpharep-4; protein eng 83.6 16 0.00053 29.3 18.1 18 219-236 150-167 (201)
268 2wpv_A GET4, UPF0363 protein Y 80.9 28 0.00095 30.4 22.5 170 257-452 34-216 (312)
269 4a1g_A Mitotic checkpoint seri 79.4 16 0.00056 27.8 9.0 49 409-457 84-134 (152)
270 2uwj_G Type III export protein 79.2 13 0.00046 25.7 9.5 85 236-325 21-105 (115)
271 2y69_E Cytochrome C oxidase su 79.2 14 0.00046 27.5 7.9 60 70-131 71-130 (152)
272 3txn_A 26S proteasome regulato 78.9 38 0.0013 30.8 20.7 283 157-455 21-345 (394)
273 2p58_C Putative type III secre 78.1 15 0.0005 25.6 10.1 85 236-325 22-106 (116)
274 3lpz_A GET4 (YOR164C homolog); 77.1 38 0.0013 29.9 24.5 164 161-350 41-215 (336)
275 4b4t_R RPN7, 26S proteasome re 75.8 9.8 0.00034 35.3 8.5 58 361-418 134-196 (429)
276 2wvi_A Mitotic checkpoint seri 75.3 24 0.00083 27.3 9.0 49 409-457 79-129 (164)
277 3ltj_A Alpharep-4; protein eng 74.9 30 0.001 27.6 17.4 25 289-314 154-178 (201)
278 4b4t_R RPN7, 26S proteasome re 73.3 20 0.00069 33.2 9.9 97 257-353 132-239 (429)
279 3bqo_A Telomeric repeat-bindin 71.1 29 0.00099 27.6 8.5 69 374-442 94-169 (211)
280 3kea_A K1L; tropism, ANK repea 69.5 17 0.00059 31.2 8.2 79 133-211 102-183 (285)
281 4b4t_S RPN3, 26S proteasome re 69.1 78 0.0027 29.9 13.6 61 256-316 231-299 (523)
282 3mv2_A Coatomer subunit alpha; 68.6 60 0.002 28.3 12.9 48 392-453 209-256 (325)
283 4gq2_M Nucleoporin NUP120; bet 64.2 73 0.0025 33.1 12.7 91 328-424 816-932 (950)
284 4aez_C MAD3, mitotic spindle c 64.0 22 0.00074 29.2 6.9 30 389-418 149-178 (223)
285 3kea_A K1L; tropism, ANK repea 63.1 37 0.0013 29.1 9.0 222 6-247 14-244 (285)
286 3eu9_A Huntingtin-interacting 62.7 38 0.0013 27.6 8.9 204 32-249 17-235 (240)
287 1wdy_A 2-5A-dependent ribonucl 60.7 62 0.0021 27.2 10.1 13 268-280 157-169 (285)
288 4ets_A Ferric uptake regulatio 56.9 41 0.0014 26.0 7.2 72 68-140 13-86 (162)
289 2qx5_A Nucleoporin NIC96; mRNA 55.1 1.6E+02 0.0056 28.9 19.5 83 192-285 300-385 (661)
290 2zu6_B Programmed cell death p 54.3 1.1E+02 0.0037 26.6 13.8 62 289-351 168-231 (307)
291 2ion_A PDCD4, programmed cell 53.0 58 0.002 24.8 7.4 62 160-221 14-80 (152)
292 3esl_A Checkpoint serine/threo 52.6 89 0.0031 25.1 10.4 59 65-124 92-151 (202)
293 4gq2_M Nucleoporin NUP120; bet 51.4 1.5E+02 0.005 30.9 12.3 106 26-147 816-921 (950)
294 2nsz_A Programmed cell death p 51.4 70 0.0024 23.5 8.6 63 160-222 12-79 (129)
295 2r9g_A AAA ATPase, central reg 50.2 97 0.0033 24.8 9.5 65 188-253 13-85 (204)
296 1k1a_A B-cell lymphoma 3-encod 48.0 1.1E+02 0.0038 24.8 9.8 83 62-149 16-102 (241)
297 1oyz_A Hypothetical protein YI 47.7 1.3E+02 0.0043 25.4 21.3 20 398-418 243-262 (280)
298 3b7b_A Euchromatic histone-lys 47.5 68 0.0023 26.1 7.9 113 131-249 116-235 (237)
299 1ya0_A SMG-7 transcript varian 47.5 63 0.0021 30.5 8.1 65 370-434 164-230 (497)
300 3bge_A Predicted ATPase; struc 46.8 1.1E+02 0.0037 24.4 8.6 45 191-235 9-56 (201)
301 4b4t_S RPN3, 26S proteasome re 46.7 62 0.0021 30.6 7.8 65 322-386 231-298 (523)
302 1wdy_A 2-5A-dependent ribonucl 46.6 1.3E+02 0.0043 25.1 12.3 18 32-49 13-30 (285)
303 3hra_A Ankyrin repeat family p 46.5 1E+02 0.0035 24.1 9.0 15 134-148 80-94 (201)
304 2d2s_A Exocyst complex compone 45.2 57 0.002 27.1 6.7 89 58-149 24-117 (235)
305 3ygs_P Procaspase 9; apoptosis 44.6 72 0.0025 22.0 6.2 63 6-71 25-87 (97)
306 1bpo_A Protein (clathrin); cla 44.3 2E+02 0.0068 26.7 10.6 113 34-149 342-455 (494)
307 3txn_A 26S proteasome regulato 43.5 1.9E+02 0.0065 26.2 27.9 283 123-418 19-342 (394)
308 3ygs_P Procaspase 9; apoptosis 43.4 29 0.001 24.0 4.0 39 270-308 51-89 (97)
309 3ctd_A Putative ATPase, AAA fa 42.5 1.3E+02 0.0046 24.2 8.7 68 185-252 31-106 (213)
310 3jxi_A Vanilloid receptor-rela 42.1 69 0.0024 26.6 7.2 53 62-115 12-73 (260)
311 1n11_A Ankyrin; clathrin, BAND 41.1 1.4E+02 0.0049 27.1 9.8 258 32-311 22-299 (437)
312 2qx5_A Nucleoporin NIC96; mRNA 40.6 2.8E+02 0.0094 27.3 18.5 22 365-386 450-471 (661)
313 3aji_A 26S proteasome non-ATPa 40.1 1.4E+02 0.0047 24.0 8.6 15 32-46 14-28 (231)
314 3mkr_B Coatomer subunit alpha; 38.5 2E+02 0.0069 25.1 11.9 49 392-454 200-248 (320)
315 3ubw_A 14-3-3E, 14-3-3 protein 38.5 1.8E+02 0.0061 24.5 9.8 162 293-455 37-230 (261)
316 3jxi_A Vanilloid receptor-rela 37.9 50 0.0017 27.5 5.6 89 94-183 8-118 (260)
317 2d2s_A Exocyst complex compone 37.5 1.3E+02 0.0045 24.9 7.8 90 292-385 23-118 (235)
318 2fe3_A Peroxide operon regulat 37.5 1.3E+02 0.0044 22.5 7.5 62 210-272 11-72 (145)
319 3bu8_A Telomeric repeat-bindin 37.3 1.4E+02 0.0047 24.3 7.2 50 338-387 88-143 (235)
320 3eu9_A Huntingtin-interacting 37.0 1.6E+02 0.0053 23.7 8.5 204 62-284 16-235 (240)
321 2ion_A PDCD4, programmed cell 36.5 1.3E+02 0.0046 22.8 7.1 60 260-319 13-77 (152)
322 1q02_A Sequestosome 1; helical 35.5 70 0.0024 18.9 4.5 41 4-47 10-50 (52)
323 2w57_A Ferric uptake regulatio 34.7 1.5E+02 0.005 22.4 7.3 62 210-272 6-68 (150)
324 1n11_A Ankyrin; clathrin, BAND 34.6 2.4E+02 0.0081 25.6 10.1 322 59-414 18-365 (437)
325 2p1h_A APAF-1, apoptotic prote 33.7 1.1E+02 0.0038 20.7 6.1 61 241-305 25-85 (94)
326 3bqo_A Telomeric repeat-bindin 33.6 1.5E+02 0.0051 23.7 6.8 44 37-81 94-146 (211)
327 2r9g_A AAA ATPase, central reg 32.9 1.9E+02 0.0065 23.2 9.2 43 293-336 17-62 (204)
328 3b7b_A Euchromatic histone-lys 32.4 1.7E+02 0.0058 23.6 8.0 16 334-349 219-234 (237)
329 2fu4_A Ferric uptake regulatio 32.0 1.1E+02 0.0036 20.0 7.2 61 210-271 6-67 (83)
330 2nsz_A Programmed cell death p 31.8 1.5E+02 0.0051 21.7 8.4 60 260-319 11-75 (129)
331 3eyy_A Putative iron uptake re 31.7 1.1E+02 0.0037 23.0 5.9 55 83-139 14-68 (145)
332 2fe3_A Peroxide operon regulat 31.4 1.5E+02 0.005 22.2 6.6 64 173-236 8-71 (145)
333 2o03_A Probable zinc uptake re 31.2 1.1E+02 0.0037 22.4 5.8 47 93-139 15-61 (131)
334 3eyy_A Putative iron uptake re 31.1 1.2E+02 0.0042 22.6 6.1 61 210-272 8-68 (145)
335 1k1a_A B-cell lymphoma 3-encod 31.1 2.1E+02 0.0071 23.0 9.5 86 95-181 13-102 (241)
336 4ets_A Ferric uptake regulatio 31.0 1.4E+02 0.0047 22.9 6.5 69 203-272 14-85 (162)
337 1oai_A Nuclear RNA export fact 30.9 36 0.0012 20.9 2.5 25 65-89 33-57 (59)
338 2br9_A 14-3-3E, 14-3-3 protein 30.8 2.3E+02 0.0078 23.4 9.1 50 406-455 146-204 (234)
339 4a1g_A Mitotic checkpoint seri 30.7 1.8E+02 0.006 22.1 10.2 42 107-148 84-126 (152)
340 3uzd_A 14-3-3 protein gamma; s 30.3 2.4E+02 0.0082 23.5 8.7 162 293-455 10-205 (248)
341 3bge_A Predicted ATPase; struc 30.2 2.1E+02 0.0072 22.9 8.0 44 293-336 10-56 (201)
342 3bu8_A Telomeric repeat-bindin 30.1 61 0.0021 26.3 4.2 60 374-433 88-157 (235)
343 3re2_A Predicted protein; meni 29.8 1.8E+02 0.006 25.9 7.2 31 421-451 293-323 (472)
344 3mwm_A ZUR, putative metal upt 29.2 1.1E+02 0.0037 22.8 5.4 48 92-139 17-64 (139)
345 3ljn_A Hypothetical protein; a 28.6 2.8E+02 0.0095 24.3 9.2 53 164-216 59-111 (364)
346 3u84_A Menin; MLL, JUND, ledgf 27.6 1.9E+02 0.0066 26.2 7.2 66 409-495 298-369 (550)
347 2xig_A Ferric uptake regulatio 27.5 1.9E+02 0.0064 21.8 6.6 62 210-272 16-77 (150)
348 2wvi_A Mitotic checkpoint seri 27.3 2.1E+02 0.0073 22.0 10.2 53 71-124 79-132 (164)
349 1oyz_A Hypothetical protein YI 27.0 2.8E+02 0.0094 23.2 21.6 215 50-281 35-259 (280)
350 3ax2_A Mitochondrial import re 27.0 1.3E+02 0.0045 19.4 4.7 29 395-423 22-50 (73)
351 3aji_A 26S proteasome non-ATPa 27.0 2.4E+02 0.0082 22.5 8.3 84 59-148 10-95 (231)
352 2w57_A Ferric uptake regulatio 26.9 1.8E+02 0.0062 21.8 6.5 61 78-140 8-69 (150)
353 2bwb_A Ubiquitin-like protein 26.8 96 0.0033 17.8 4.1 35 6-44 9-43 (46)
354 2cfu_A SDSA1; SDS-hydrolase, l 26.8 1.5E+02 0.0052 29.2 7.4 62 375-439 437-498 (658)
355 1mzb_A Ferric uptake regulatio 26.5 1.9E+02 0.0066 21.2 7.1 61 211-272 8-69 (136)
356 3ctd_A Putative ATPase, AAA fa 25.5 2.7E+02 0.0091 22.5 8.7 46 291-336 36-84 (213)
357 2b7e_A PRE-mRNA processing pro 25.5 91 0.0031 19.2 3.5 30 68-98 2-31 (59)
358 2zu6_B Programmed cell death p 25.2 2.5E+02 0.0087 24.3 7.7 66 158-223 169-239 (307)
359 2crb_A Nuclear receptor bindin 25.1 1.4E+02 0.0049 20.3 4.6 26 392-417 17-42 (97)
360 2p1h_A APAF-1, apoptotic prote 24.5 1.7E+02 0.0057 19.8 5.8 62 5-71 25-86 (94)
361 2of3_A ZYG-9; multifunctional 24.0 96 0.0033 26.3 4.7 81 4-85 111-201 (266)
362 2dod_A Transcription elongatio 23.9 1.3E+02 0.0044 20.0 4.3 37 67-104 15-51 (82)
363 1mzb_A Ferric uptake regulatio 23.9 1.5E+02 0.005 21.9 5.3 57 83-140 13-70 (136)
364 3hra_A Ankyrin repeat family p 23.5 1.3E+02 0.0045 23.4 5.5 45 32-77 47-94 (201)
365 3twr_A Tankyrase-2; ankyrin re 23.4 2.3E+02 0.0079 21.0 7.3 15 32-46 16-30 (165)
366 1o9d_A 14-3-3-like protein C; 22.6 3.5E+02 0.012 22.8 10.9 162 293-455 14-209 (260)
367 4b4t_O 26S proteasome regulato 21.6 3.4E+02 0.011 24.5 8.2 17 332-348 86-102 (393)
368 2ijq_A Hypothetical protein; s 21.5 2.8E+02 0.0095 21.3 7.7 60 358-418 33-103 (161)
369 2xai_A ASB-9, ankyrin repeat a 21.5 3.4E+02 0.012 22.3 8.4 170 6-186 17-194 (261)
370 3mwm_A ZUR, putative metal upt 21.4 1.6E+02 0.0055 21.8 5.1 48 225-272 17-64 (139)
371 1wr1_B Ubiquitin-like protein 21.1 1.5E+02 0.0052 18.1 4.0 34 7-44 20-53 (58)
372 2f6m_A Suppressor protein STP2 21.1 1.6E+02 0.0056 18.5 4.1 43 189-232 5-47 (65)
373 1wgl_A TOLL-interacting protei 21.0 73 0.0025 19.6 2.5 46 412-459 12-58 (59)
374 1uzc_A Hypothetical protein FL 20.6 1.5E+02 0.0052 19.0 4.0 37 67-104 13-49 (71)
375 2pnn_A Transient receptor pote 20.6 3.3E+02 0.011 22.5 7.8 60 53-114 12-80 (273)
376 4gq4_A Menin; tumor suppressor 20.5 4E+02 0.014 24.3 7.9 71 409-500 283-359 (489)
377 2ko4_A Mediator of RNA polymer 20.2 1.5E+02 0.0051 19.4 3.8 31 83-113 31-61 (81)
378 2dna_A Unnamed protein product 20.2 1.6E+02 0.0053 18.7 3.9 36 7-46 22-57 (67)
379 2xig_A Ferric uptake regulatio 20.1 2.8E+02 0.0096 20.8 8.0 50 186-235 26-75 (150)
380 3t5v_B Nuclear mRNA export pro 20.0 1E+02 0.0034 28.7 4.4 22 362-383 180-201 (455)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-41 Score=335.95 Aligned_cols=427 Identities=12% Similarity=0.030 Sum_probs=377.0
Q ss_pred CChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHH
Q 046039 18 KDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLF 95 (502)
Q Consensus 18 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 95 (502)
++...++.++..+ .+.|++++|..+|+++.. |+..++..++.++.+.|++++|+.+|+.+.. .+++..+++.++
T Consensus 82 ~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDA-LMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHH
Confidence 6778899999999 899999999999999875 8888999999999999999999999999864 367888999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCC-eeeH
Q 046039 96 KAYAQLGLARDGAQLHGRVVKQ---------------GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFD-VVAW 158 (502)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~ 158 (502)
.++.+.|++++|..+|+++... |.+++..+++.++.+|.+.|++++|.+.|+++.. .|+ ...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1233578999999999999999999999998864 232 2232
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHccCC--CChhhHHHHHHHHHh
Q 046039 159 NSM--------------------------------------IIGLAKCGEIDESRRLFDKMVS--RNTVSWNSMISGYVR 198 (502)
Q Consensus 159 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 198 (502)
..+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 222 4456678999999999999977 789999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++|..+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999876 5578889999999999999999999999999764 56788999999999999999999999
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 046039 279 FNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 279 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 355 (502)
|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 998754 456799999999999999999999999999874 347789999999999999999999999999874 34
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-------DPD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+..+|+.++.+|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 5788999999999999999999999998743 566 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 427 YVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+..++.+|.+.|++++|.++++++.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999854
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-38 Score=318.42 Aligned_cols=427 Identities=9% Similarity=-0.023 Sum_probs=374.0
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCC--CCCcchHHHHHHHHhcCCChHHHHHHHHHhH
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIK--KPNLFIWNTIIRGFSQSSTPRNAILLFIDML 79 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 79 (502)
+.|..+++.+.+ ..|+..++..+...| .+.|++++|..+|+.+. .++..+++.++.+|.+.|++++|+++|+++.
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVY-CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHH-HHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHH-HHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 457788888885 568889998888888 99999999999999985 4889999999999999999999999998644
Q ss_pred hcC--------------CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHH----------------
Q 046039 80 VTS--------------PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTI---------------- 129 (502)
Q Consensus 80 ~~~--------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------- 129 (502)
... +.+++..+|+.++.++.+.|++++|..+|+++.+.++. +...+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHH
Confidence 321 22345778999999999999999999999999987633 34443333
Q ss_pred ----------------------HHHHHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC---
Q 046039 130 ----------------------IYMYANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--- 183 (502)
Q Consensus 130 ----------------------~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 183 (502)
+..|.+.|++++|.++|+++.. +++..+|+.++.+|.+.|++++|..+|+++..
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc
Confidence 4556678999999999999985 47889999999999999999999999999843
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..+.+.|++++|..+|+++.+.. +.+..+++.++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 477889999999999999999999999998764 6789999999999999999999999999999865 45688999999
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
.+|.+.|++++|.++|+++.+ .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998754 356799999999999999999999999999864 3478999999999999999999
Q ss_pred HHHHHHHhhhhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 341 AKDYFTLMTETY---KIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 341 a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++.. .| +..+|..++.+|.+.|++++|.+.|
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999997642 44666 78999999999999999999999998764 34 7889999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHH
Q 046039 414 KQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
+++++++|+++..+..++.+|.
T Consensus 574 ~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 574 HESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.8e-30 Score=241.14 Aligned_cols=373 Identities=13% Similarity=0.043 Sum_probs=301.9
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
...+.+.|++++|++.++.+.+. .+.+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556678888888888777764 22233455556666777788888888887777764 4567778888888888888
Q ss_pred hhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046039 139 LSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQ 213 (502)
Q Consensus 139 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (502)
+++|...|+++.. +.+..+|..+..++.+.|++++|...|+++.. | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877653 33445677778888888888888888877743 3 44567778888888999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchH
Q 046039 214 EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCW 290 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 290 (502)
+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 874 5567888889999999999999999999998875 44677888889999999999999999887654 345688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..++..+...|++++|+..|+++.+.+. .+..++..+..++...|++++|...++.+.+. .+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8899999999999999999999998642 35678889999999999999999999999874 45678889999999999
Q ss_pred cCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 371 AGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
.|++++|...++++... | +..++..++.++.+.|++++|...|+++++.+|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999988753 4 577899999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.6e-30 Score=240.45 Aligned_cols=373 Identities=13% Similarity=0.060 Sum_probs=325.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCH
Q 046039 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEI 171 (502)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 171 (502)
+...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++.... +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3456778999999999999999875 44677788888999999999999999987654 55777899999999999999
Q ss_pred HHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 172 DESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 172 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
++|+..|+++.. | +..+|..++.++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999843 4 45679999999999999999999999999875 5556677888889999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 249 TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISF 325 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 325 (502)
+.. +.+..++..+...+...|++++|...|+++.+. ....|..+...+...|++++|+..+++.....+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 875 446788999999999999999999999987653 345888999999999999999999999988542 357888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKH 403 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 403 (502)
..+..++...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|...|+++.. ..+..+|..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999873 344577899999999999999999999998864 34788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCc
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKA 483 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 483 (502)
|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+ .+|+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~ 372 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999874 25667
Q ss_pred hHHHHHHHHHHHHHH
Q 046039 484 PEVYLLLNDLGLLIQ 498 (502)
Q Consensus 484 ~~~~~~l~~~~~~~~ 498 (502)
.+.+..+..++..++
T Consensus 373 ~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHcc
Confidence 788888888776654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1e-27 Score=229.95 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=152.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCC---------chhHHHHHHHHHHhCCCCch
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGL---------ARDGAQLHGRVVKQGLEFDQ 123 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 123 (502)
..++.+|.+|++.|++++|+++|++|.+. |++||..+|+.||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 35777888888888888888888888887 888888888888888876654 46788888888888888888
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChH
Q 046039 124 FIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFK 203 (502)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (502)
.+|+.++.+|++.|++++|.++|++|. +.-..||..+|+.+|.+|++.|+++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~----------------------------~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMK----------------------------AFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------------HTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------------HcCCCCccceehHHHHHHHHCCCHH
Confidence 888888888888888888888887776 2335677888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.+..|+..+|+.++..|..
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888777764
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-26 Score=225.51 Aligned_cols=393 Identities=9% Similarity=-0.018 Sum_probs=285.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
.+......+.+.|++++|+..|+++.+. .|+..++..+..++...|++++|...++.+++.+ +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3444455555666666666666666554 2455555556666666666666666666665553 23445555566666
Q ss_pred HhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHH-------------------------------------
Q 046039 134 ANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDES------------------------------------- 174 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a------------------------------------- 174 (502)
...|++++|...|+++.. +++......++..+........+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 666666666666655432 12222222222222221111111
Q ss_pred -HHHHHccC---------CC-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 046039 175 -RRLFDKMV---------SR-NTVSWNSMISGYVR---NVKFKEALELFREMQE-----QNI--------KPSEFTMVSL 227 (502)
Q Consensus 175 -~~~~~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~l 227 (502)
...+.... .| +...+......+.. .|++++|...|+++.+ ..- +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111110 01 14445555555554 8999999999999987 311 2235677788
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChH
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYEN 304 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 304 (502)
..++...|++++|...++.+.+.... ..++..+..+|...|++++|...++++.+. +...+..++..+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88999999999999999999988644 888889999999999999999999987653 4568899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
+|+..++++.+.... +...+..+...+...|++++|...++.+.+. .+.+...+..++..|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999986433 5678888999999999999999999999874 3445778888999999999999999999887
Q ss_pred CCC----CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 385 PSD----PD----AIIWGSLLSACRK---HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 385 ~~~----~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
... ++ ...|..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 542 22 3488999999999 999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 046039 454 KI 455 (502)
Q Consensus 454 ~~ 455 (502)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.8e-27 Score=228.15 Aligned_cols=201 Identities=10% Similarity=0.126 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhCCCCChH-HHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCC---------hH
Q 046039 4 LKKIHAHLIKTGLAKDPI-AASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSST---------PR 69 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~---------~~ 69 (502)
+..+...+.+.+..+.+. .++.+|..| ++.|++++|.++|++|.+ ||..+||+||.+|++.+. .+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c-~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMC-SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 455667888888877764 588999999 999999999999999975 999999999999987765 57
Q ss_pred HHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhc
Q 046039 70 NAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEV 149 (502)
Q Consensus 70 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (502)
+|.++|++|... |+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999998 9999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 150 DTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLN 229 (502)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 229 (502)
. +.-..||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..||+.++.
T Consensus 167 ~----------------------------~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 167 V----------------------------ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp H----------------------------HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred H----------------------------hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 7 345779999999999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 046039 230 ACAKL 234 (502)
Q Consensus 230 ~~~~~ 234 (502)
.++..
T Consensus 219 ~F~s~ 223 (501)
T 4g26_A 219 WFKSE 223 (501)
T ss_dssp HHHSH
T ss_pred HHhcC
Confidence 88764
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-25 Score=217.42 Aligned_cols=400 Identities=11% Similarity=-0.032 Sum_probs=317.1
Q ss_pred HHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhc
Q 046039 24 SRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQL 101 (502)
Q Consensus 24 ~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 101 (502)
...-..+ .+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|+..|+.+.+. .+.+..++..+..++...
T Consensus 10 ~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQF-FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHH-HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHH
Confidence 3334445 788999999999999875 88899999999999999999999999999875 234456888999999999
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHH-----------------------------------
Q 046039 102 GLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMF----------------------------------- 146 (502)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----------------------------------- 146 (502)
|++++|...|+.+.+.+. ++......++..+........+.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998764 34333333443333322222111111
Q ss_pred ---hhcCCC---------CCeeeHHHHHHHHHh---cCCHHHHHHHHHccCC----------------C-ChhhHHHHHH
Q 046039 147 ---DEVDTE---------FDVVAWNSMIIGLAK---CGEIDESRRLFDKMVS----------------R-NTVSWNSMIS 194 (502)
Q Consensus 147 ---~~~~~~---------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~ 194 (502)
...... .+...+......+.. .|++++|...|+++.. | +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111110 112333444444444 8999999999988754 1 3457888899
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 046039 195 GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPER 274 (502)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (502)
.+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999875 338888999999999999999999999999875 4567888999999999999999
Q ss_pred HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 275 ALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 275 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|...|+++.+ .+...+..++..+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998754 345688999999999999999999999998863 235678888999999999999999999998764
Q ss_pred cCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 352 YKIKPS----IKHYSCMVDALGR---AGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 352 ~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
..-.++ ...+..+..++.. .|++++|...|+++.. .| +..++..++.++...|++++|...|+++++++|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 322222 3388889999999 9999999999998754 23 6778999999999999999999999999999999
Q ss_pred CcchHHHHH
Q 046039 423 ESCGYVLMS 431 (502)
Q Consensus 423 ~~~~~~~l~ 431 (502)
++..+..+.
T Consensus 482 ~~~~~~~~~ 490 (514)
T 2gw1_A 482 MEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 988877664
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.4e-24 Score=214.05 Aligned_cols=394 Identities=9% Similarity=-0.003 Sum_probs=270.7
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
..|..+...+.+.|++++|++.|+++.+. .+.+...+..+..++...|++++|...++++++.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455555555666666666666665543 12334455555555556666666666666665553 2345555555566
Q ss_pred HHhCCChhHHHHHHhhcCCCCCe-----------------------------------eeHHHHHHHHHhcCCHHHHHHH
Q 046039 133 YANCGFLSEARLMFDEVDTEFDV-----------------------------------VAWNSMIIGLAKCGEIDESRRL 177 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~~~~~~a~~~ 177 (502)
+...|++++|...|+.+...|+. ......+..+....+.+.+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 66666666666655433222221 1122223333334444444444
Q ss_pred HHccCCCChh---hHHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCchHH
Q 046039 178 FDKMVSRNTV---SWNSMISGYVRN--------VKFKEALELFREMQEQNIKPSE-------FTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 178 ~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~ 239 (502)
+......+.. ....+...+... |++++|..+++++.+.. +.+. .++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 4333332222 233333333222 47889999999988764 3332 246666777888899999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..+|..++..+...|++++|+..++++.+.
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999875 4477888889999999999999999987764 34568889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----
Q 046039 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P---- 388 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---- 388 (502)
.. .+...+..+..++...|++++|...++.+.+. .+.+...+..+...+...|++++|...|+++... +
T Consensus 340 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 340 NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 43 24577888889999999999999999999874 3455678888999999999999999999887531 1
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 389 DAIIWGSLLSACRKH----------GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
....+..+...+... |++++|...|+++++.+|+++.++..++.+|...|++++|.+.++++.+...
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223355566777777 9999999999999999999999999999999999999999999999887654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.9e-24 Score=205.25 Aligned_cols=330 Identities=11% Similarity=0.029 Sum_probs=227.0
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 046039 87 QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA 166 (502)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 166 (502)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 88 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--------------- 88 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 34455666666666666666666666666553 33555666666666666666666666655432
Q ss_pred hcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHH
Q 046039 167 KCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE---FTMVSL------------LNAC 231 (502)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------l~~~ 231 (502)
....+..++..++.+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+
T Consensus 89 --------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 89 --------------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234455556666666666666666666665542 2222 333332 3346
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 046039 232 AKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ .++.+|..++..|...|++++|+.
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66777777777777777654 34566677777777777777777777776654 345577778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHH------------HHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHHHhcCCH
Q 046039 309 LFSGLQSSNLKPDYISFIAV------------LTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHYSCMVDALGRAGLL 374 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 374 (502)
.|+++..... .+...+..+ ..++...|++++|...|+.+.......+. ...+..++.++.+.|++
T Consensus 233 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 233 EVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 8888876432 233333333 77888999999999999999875221111 44788889999999999
Q ss_pred HHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH------------HHhcC--
Q 046039 375 EEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL------------YAASY-- 438 (502)
Q Consensus 375 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-- 438 (502)
++|...++++.. .| +...|..++.+|...|++++|...++++++++|+++.++..++.+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999998753 34 688999999999999999999999999999999999999999844 44555
Q ss_pred ---CchHHHHHHHH
Q 046039 439 ---QFEEAMEERLL 449 (502)
Q Consensus 439 ---~~~~A~~~~~~ 449 (502)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45566666665
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=5.5e-24 Score=204.87 Aligned_cols=378 Identities=12% Similarity=0.017 Sum_probs=246.0
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHH
Q 046039 38 NYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRV 114 (502)
Q Consensus 38 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 114 (502)
..+...|..+.. .+...+..+...+.+.|++++|+.+|+.+.+. .+.+..++..+..++...|++++|...++.+
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444555443 45567889999999999999999999999875 3456778999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CC-Ce---eeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhH
Q 046039 115 VKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EF-DV---VAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSW 189 (502)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (502)
.+.+ +.+..++..+..+|...|++++|...|+++.. .| +. ..+..+...+... .+
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~ 146 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RL 146 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HH
Confidence 9986 44788999999999999999999999998764 23 23 4555554331110 11
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 222333444555555555555554442 3344445555555555555555555555554442 23344455555555555
Q ss_pred CChHHHHHHHhcCCCC---CcchH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 046039 270 GCPERALQVFNTVPKK---GLSCW------------NSMVFGLAMNGYENEAIKLFSGLQSSNLKPD-----YISFIAVL 329 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~---~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~ 329 (502)
|++++|...|+++.+. +...+ ..++..+...|++++|+..|+++.+. .|+ ...+..+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 5555555555544321 11222 22377788888899999888888874 333 34677788
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH--------
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA-------- 399 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~-------- 399 (502)
.++.+.|++++|...++.+... .+.+...+..++.+|...|++++|...|+++.. .| +...+..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 8888899999999999888763 244678888888889999999999999888754 35 45566666533
Q ss_pred ----HHhcC-----CHHHHHHHHHH-HHhcCCCCcc----------hHHHHHHHHHhcCCchHH
Q 046039 400 ----CRKHG-----NIEMAKQAAKQ-IIELDKNESC----------GYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 400 ----~~~~~-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 443 (502)
|...| +.+++.+.+++ +++..|++.. .+..+..+|...|+.+++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33334 56788888887 6777777542 344555566666655544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-22 Score=200.07 Aligned_cols=398 Identities=12% Similarity=0.001 Sum_probs=297.4
Q ss_pred HHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHH
Q 046039 21 IAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKA 97 (502)
Q Consensus 21 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 97 (502)
..+..+-..+ .+.|++++|+..|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .+.+..++..+..+
T Consensus 26 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHF-FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHH-HHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 3344445555 789999999999999865 56778999999999999999999999999875 24456688888999
Q ss_pred HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--------------------------
Q 046039 98 YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-------------------------- 151 (502)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------- 151 (502)
+...|++++|...++ .... .|+.. ...+..+...+....|...++++..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 3322 22211 1112222333333444444443321
Q ss_pred ----------CCCee---eHHHHHHHHHh--------cCCHHHHHHHHHccCCC--C--------hhhHHHHHHHHHhCC
Q 046039 152 ----------EFDVV---AWNSMIIGLAK--------CGEIDESRRLFDKMVSR--N--------TVSWNSMISGYVRNV 200 (502)
Q Consensus 152 ----------~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~--~--------~~~~~~l~~~~~~~~ 200 (502)
..+.. ....+...+.. .+++++|..+|+++.+. + ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11111 12222222221 25889999999998553 2 224777778899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
++++|...|+.+.+. .|+...+..+..++...|+++.|...++.+.+.. +.+..++..+...+...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999986 4558889999999999999999999999999876 4567889999999999999999999999
Q ss_pred cCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-
Q 046039 281 TVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP- 356 (502)
Q Consensus 281 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 356 (502)
++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.....+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8764 345689999999999999999999999999864 33567888899999999999999999999876421111
Q ss_pred ---ChhHHHHHHHHHHhc----------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 357 ---SIKHYSCMVDALGRA----------GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 357 ---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
....+..+..++.+. |++++|...|+++.. .| +...+..++.+|...|++++|.+.|++++++.|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 122244556677787 999999999998864 34 678899999999999999999999999999999
Q ss_pred CCcchHHHH
Q 046039 422 NESCGYVLM 430 (502)
Q Consensus 422 ~~~~~~~~l 430 (502)
+++.....+
T Consensus 494 ~~~~~~~~~ 502 (537)
T 3fp2_A 494 TMDEKLQAT 502 (537)
T ss_dssp -CHHHHHHH
T ss_pred CcHHHHHHH
Confidence 988765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=9.8e-22 Score=182.95 Aligned_cols=326 Identities=12% Similarity=0.064 Sum_probs=204.0
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHH
Q 046039 122 DQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGY 196 (502)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 196 (502)
++..+..+...+...|++++|...|+++.. +.+..++..+..++...|++++|...|+++.+ .+...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 344556666666667777777766666542 23344445555555555555555555555422 1334445555555
Q ss_pred HhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 046039 197 VRNVKFKEALELFREMQEQNIK---PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPE 273 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (502)
...|++++|...|+++.+.. + .+...+..+..... ...+..+...+...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555554432 1 12222222210000 000111245566667777
Q ss_pred HHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 274 RALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 274 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
+|..+++++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77776665543 234466666777777777777777777777653 33566677777777777777777777777765
Q ss_pred hcCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 046039 351 TYKIKPSIKHYS------------CMVDALGRAGLLEEAEKLIRSMPS-DPD-A----IIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 351 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.. +.+...+. .++..+.+.|++++|...++++.. .|+ . ..+..++.++...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 32 22222222 235668888999999988887654 233 2 2355678888899999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHH
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLND 492 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 492 (502)
++++++.+|+++.++..++.+|...|++++|...++++.+ ..|+++++...|..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999988874 35677788888888
Q ss_pred HHHHHHhc
Q 046039 493 LGLLIQEM 500 (502)
Q Consensus 493 ~~~~~~~~ 500 (502)
+...++++
T Consensus 349 ~~~~~~~~ 356 (359)
T 3ieg_A 349 AQRLLKQS 356 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777664
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.6e-21 Score=179.11 Aligned_cols=315 Identities=12% Similarity=-0.023 Sum_probs=225.6
Q ss_pred cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHH
Q 046039 88 RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGL 165 (502)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 165 (502)
...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.. +.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4467778888999999999999999999985 44788999999999999999999999998764 44667889999999
Q ss_pred HhcCCHHHHHHHHHccCCCCh------hhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 166 AKCGEIDESRRLFDKMVSRNT------VSWNSM------------ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSL 227 (502)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~------~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 227 (502)
...|++++|...|++....++ ..+..+ ...+...|++++|+..++++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 999999999999999865333 233333 345555555555555555555543 3444555555
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
..++...|++++|...++.+.+.. +.+.. .+..+...+...|++++|.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------------------------------~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTE-------------------------------AFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHH-------------------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-------------------------------HHHHHHHHHHHcCCHHHHH
Confidence 555555555555555555555442 22334 4444455555555555555
Q ss_pred HHHHHHHHCCCCCCHHH------------HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh--hHHHHHHHHHHhcCC
Q 046039 308 KLFSGLQSSNLKPDYIS------------FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI--KHYSCMVDALGRAGL 373 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 373 (502)
..+++..+.... +... ...+...+...|++++|...++.+.....-.+.. ..+..+..++...|+
T Consensus 209 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 209 SEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 555555543211 2221 2233666888999999999999988752211111 235567888999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+++|...++++.. .| +...|..++.++...|++++|.+.|+++++++|+++..+..+..+....
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999988764 34 7789999999999999999999999999999999999998888776544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.4e-20 Score=173.05 Aligned_cols=278 Identities=12% Similarity=0.019 Sum_probs=134.1
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNA 230 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 230 (502)
+...+..+...+...|++++|.++|+++.. .+...+..++.++...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344444555555555555555555555422 223344444555555555555555555555443 3344445555555
Q ss_pred HhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHH
Q 046039 231 CAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEA 306 (502)
Q Consensus 231 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a 306 (502)
+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+. +...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 55555 5555555555555443 223444455555555555555555555544321 223444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-------CCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 307 IKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK-------IKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
...+++..+.. +.+...+..+...+...|++++|...++.+..... .+.....+..+..+|...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555432 12344444455555555555555555555443210 01223344445555555555555555
Q ss_pred HHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 380 LIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 380 ~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
.++++.. . .+...|..++.++...|++++|.+.++++++++|+++..+..++.++
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5544432 1 23344444555555555555555555555555555555555555444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.1e-19 Score=172.45 Aligned_cols=376 Identities=12% Similarity=-0.015 Sum_probs=308.7
Q ss_pred HHHhccCC-CCCcchHHHHHHHHhc----CCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHh----cCCchhHHHHH
Q 046039 41 YLVFTQIK-KPNLFIWNTIIRGFSQ----SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ----LGLARDGAQLH 111 (502)
Q Consensus 41 ~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 111 (502)
...+.... ..++.++..+...|.. .+++++|+..|+...+. | +...+..+...+.. .+++++|...|
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44444432 3677888888888887 89999999999999875 3 55677788888887 88999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh----CCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh----cCCHHHHHHHHHccCC
Q 046039 112 GRVVKQGLEFDQFIHNTIIYMYAN----CGFLSEARLMFDEVDTEFDVVAWNSMIIGLAK----CGEIDESRRLFDKMVS 183 (502)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 183 (502)
+...+.| +...+..+...|.. .+++++|...|++.....++..+..+...|.. .++.++|...|++..+
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9998876 66777888888888 78999999999987766677788888888887 8899999999988744
Q ss_pred -CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCC
Q 046039 184 -RNTVSWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 184 -~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 254 (502)
.++.++..+...|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|..+++...+.+
T Consensus 180 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 180 QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 467788888899888 899999999999998875 45667777777765 789999999999998865
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-CcchHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHH
Q 046039 255 NTIVVTAIIDMYCK----CGCPERALQVFNTVPKK-GLSCWNSMVFGLAMN-----GYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 255 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
++..+..+...|.. .+++++|...|++..+. ++.++..+...|... +++++|+.+|++..+.| +...
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 45667778888887 89999999999987664 456788888888887 89999999999999875 4566
Q ss_pred HHHHHHHHhcCC---CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 046039 325 FIAVLTACNHSG---KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLL 397 (502)
Q Consensus 325 ~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~ 397 (502)
+..+...+...| ++++|.++|++..+. .++..+..|...|.. .+++++|...|++.....++..+..|.
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg 406 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677777776656 789999999998874 357788889999988 899999999999987667788899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 046039 398 SACRK----HGNIEMAKQAAKQIIELDKN---ESCGYVLMSNLYAA 436 (502)
Q Consensus 398 ~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 436 (502)
..|.. .+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99998 89999999999999998854 77777777765543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.5e-20 Score=168.52 Aligned_cols=267 Identities=14% Similarity=0.069 Sum_probs=203.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
.++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466677777888888888888888888887764 4455566667777788888888888888888764 44667777788
Q ss_pred HHHHhcC-ChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 264 DMYCKCG-CPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 264 ~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
..+...| ++++|...|+++.+. +...|..++..+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 8888888 888888888876543 3457888888888888888888888888775422 3455666777888888888
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-----------DPDAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 408 (502)
+|...++.+.+ ..+.+...+..++..+...|++++|...++++.. .....++..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888876 3344567777888888888888888888776542 1234577888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
|...++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 88888888888888888888888888888888888888888766543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.7e-18 Score=168.08 Aligned_cols=363 Identities=12% Similarity=0.021 Sum_probs=306.3
Q ss_pred HHHHHHHhHhcCCCCCCcccHHHHHHHHHh----cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCChhHH
Q 046039 71 AILLFIDMLVTSPIQPQRLTYPSLFKAYAQ----LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN----CGFLSEA 142 (502)
Q Consensus 71 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 142 (502)
+++.++...+. .+...+..+...+.. .++++.|...|+...+.| +...+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 45555555443 356677777777777 899999999999999875 67788889999998 8999999
Q ss_pred HHHHhhcCCCCCeeeHHHHHHHHHh----cCCHHHHHHHHHccCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 046039 143 RLMFDEVDTEFDVVAWNSMIIGLAK----CGEIDESRRLFDKMVS-RNTVSWNSMISGYVR----NVKFKEALELFREMQ 213 (502)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 213 (502)
...|++.....++..+..|...|.. .+++++|+..|++..+ .++..+..+...|.. .+++++|+++|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999988766777888888888988 8899999999999855 467788888888887 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCCC
Q 046039 214 EQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK----CGCPERALQVFNTVPKK 285 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 285 (502)
+.| +...+..+...+.. .++.++|...|++..+.+ ++..+..+...|.. .+++++|...|++..+.
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 56778888888877 899999999999999875 55677788888886 88999999999987665
Q ss_pred -CcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhhhcCCC
Q 046039 286 -GLSCWNSMVFGLAM----NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS-----GKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 286 -~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~ 355 (502)
++.++..+...|.. .+++++|+.+|++..+.| +...+..+...+... +++++|..+|+...+. +
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~-- 326 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G-- 326 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T--
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C--
Confidence 45577888888888 899999999999998765 456677777777776 8999999999998874 3
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 356 PSIKHYSCMVDALGRAG---LLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
+...+..+...|...| ++++|.++|++.....++..+..+...|.. .+++++|.+.|+++.+.. ++..+.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 4567777888888766 889999999998776788899999999998 899999999999998854 578899
Q ss_pred HHHHHHHh----cCCchHHHHHHHHhhhcCC
Q 046039 429 LMSNLYAA----SYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 429 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 455 (502)
.|+.+|.. .+++++|...+++..+.+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999998 8999999999999998774
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.3e-20 Score=174.50 Aligned_cols=298 Identities=13% Similarity=0.001 Sum_probs=192.3
Q ss_pred HHhCCChhHHHH-HHhhcCC-C---C--CeeeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCCh
Q 046039 133 YANCGFLSEARL-MFDEVDT-E---F--DVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKF 202 (502)
Q Consensus 133 ~~~~g~~~~a~~-~~~~~~~-~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 202 (502)
+...|++++|.. .|++... . | +...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334466666666 6654432 1 1 234455555555555666666555555522 2344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 56655555555543 344555555555555555555555555555554311 11111111000 00 0
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 046039 283 PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY 361 (502)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (502)
.. ....+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|++++|...++.+... .+.+...+
T Consensus 179 ~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 254 (368)
T 1fch_A 179 AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW 254 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHH
Confidence 00 000111233333 8899999999999998864322 5788999999999999999999999999874 34457889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHH
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-----------SCGYV 428 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~ 428 (502)
..++.+|...|++++|...|+++.. . .+...+..++.+|...|++++|...|++++++.|++ +.++.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 9999999999999999999998754 2 467899999999999999999999999999988887 78999
Q ss_pred HHHHHHHhcCCchHHHHHHHHh
Q 046039 429 LMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.++.+|...|++++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999987644
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.1e-17 Score=163.98 Aligned_cols=409 Identities=8% Similarity=-0.005 Sum_probs=280.3
Q ss_pred ChHHHHHHHHhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHH
Q 046039 19 DPIAASRILAFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLF 95 (502)
Q Consensus 19 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 95 (502)
+...|..++. + .+.|+++.|..+|+++.+ | +...|..++..+.+.|++++|..+|++.... .|+...|...+
T Consensus 12 ~~~~w~~l~~-~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-E-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-H-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CHHHHHHHHH-H-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 5667777776 4 567889999999988865 3 4557888888888889999999999988864 46666666666
Q ss_pred HHH-HhcCCchhHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCChhHHHHHHhhcCCCCCe---e
Q 046039 96 KAY-AQLGLARDGAQ----LHGRVVKQ-GLEF-DQFIHNTIIYMYAN---------CGFLSEARLMFDEVDTEFDV---V 156 (502)
Q Consensus 96 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~---~ 156 (502)
... ...|+.+.|.+ +|+..+.. |..| +..+|...+....+ .|+++.|..+|++....|.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 34577777665 66666553 4333 45677777666554 57788888888777653322 1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHH------HHCC---CCCC-------
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREM------QEQN---IKPS------- 220 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~~---~~~~------- 220 (502)
.|..........+. ..+..++. .+.+++..|..+++.. .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22221111100110 01111111 1234566666666552 2221 3444
Q ss_pred -HHHHHHHHHHHhc----cCch----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCChH-------HHHH
Q 046039 221 -EFTMVSLLNACAK----LGAI----RQGEWIHNFLVTNCFELNTIVVTAIIDMYCK-------CGCPE-------RALQ 277 (502)
Q Consensus 221 -~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~ 277 (502)
...|...+..... .++. ..+..+|++++... +.++.++..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 1344444432221 1232 36778898888864 5567888888888775 68987 8999
Q ss_pred HHhcCCC-C---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 278 VFNTVPK-K---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD-Y-ISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 278 ~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
+|++..+ . +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+...+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998775 2 3558899999999999999999999999985 443 3 57888888888899999999999999863
Q ss_pred cCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---
Q 046039 352 YKIKPSIKHYSCMVDA-LGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC--- 425 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 425 (502)
.+.+...|...+.. +...|+.++|..+|++.... | ++..|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 22233333332222 34689999999999987643 5 6789999999999999999999999999998777665
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 426 -GYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 426 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+|...+......|+.+.+..+.+++.+.-+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 787778888889999999999998876544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.6e-19 Score=168.47 Aligned_cols=258 Identities=12% Similarity=-0.039 Sum_probs=181.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
.+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555543 3445555555555555555555555555555543 233455555555555
Q ss_pred hcCChHHHHHHHhcCCCCC-------------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh
Q 046039 268 KCGCPERALQVFNTVPKKG-------------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACN 333 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 333 (502)
..|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 5555555555555544321 123344577888899999999999999886432 26788999999999
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
..|++++|...++++.+. .+.+..++..++.+|...|++++|...|+++.. .| +..+|..++.+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999874 345688899999999999999999999998764 34 57899999999999999999999
Q ss_pred HHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 412 AAKQIIELDKN------------ESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 412 ~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.|++++++.|+ +..++..++.++...|+.+.|..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998876 367899999999999999999887655
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.9e-19 Score=163.40 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=115.4
Q ss_pred CCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 046039 33 PAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 112 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 112 (502)
+.|++++|.+.++++..| .+|+.++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 459999999999999655 48999999999999999999999643 577789999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHH
Q 046039 113 RVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSM 192 (502)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 192 (502)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 77774 4567888999999999999999887775 577789999999999999999999999987 588999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999988 2678899999999999999998554443 223334455677888888888
Q ss_pred HHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHhcCCCHHHHH
Q 046039 273 ERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP------DYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 273 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
++|..+++.....+ ...|+.+.-+|++- ++++..+.++..... +++| +...|..+...|...++++.|.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 88888888766543 33666666666654 233333333322211 1222 2234555555555566666555
Q ss_pred H
Q 046039 343 D 343 (502)
Q Consensus 343 ~ 343 (502)
.
T Consensus 303 ~ 303 (449)
T 1b89_A 303 I 303 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.5e-19 Score=168.88 Aligned_cols=300 Identities=12% Similarity=-0.004 Sum_probs=213.2
Q ss_pred HHhcCCHHHHHH-HHHccCC--C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 165 LAKCGEIDESRR-LFDKMVS--R-----NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 165 ~~~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 8876633 1 34567788888889999999999999888875 6677788888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
+++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+.++. .+..+...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------- 175 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG----------------- 175 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------
Confidence 888888888888775 345667777777777777777777777665433221 11100000
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHH
Q 046039 314 QSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAI 391 (502)
Q Consensus 314 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~ 391 (502)
... ..+. ..+.. +..+...|++++|...++.+.......++..++..++..|.+.|++++|...|+++.. .| +..
T Consensus 176 ~~~-~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 176 AGG-AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhh-hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 000 0000 11112 2233378999999999999987533222578899999999999999999999998764 34 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEE
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVH 471 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (502)
.|..++.++...|++++|+..|+++++..|+++.++..++.+|.+.|++++|...++++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~--------- 321 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGP--------- 321 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCc---------
Confidence 999999999999999999999999999999999999999999999999999999999988654321 000
Q ss_pred EEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 472 EFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 472 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
....+|....++..++.++..+++.+
T Consensus 322 ----~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 322 ----RGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred ----cccccchhhHHHHHHHHHHHHhCChH
Confidence 11346778899999999999888764
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.6e-18 Score=165.28 Aligned_cols=388 Identities=10% Similarity=-0.032 Sum_probs=187.2
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHhHhc----CC--CCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHHhC------
Q 046039 52 LFIWNTIIRGFSQSSTPRNAILLFIDMLVT----SP--IQP-QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQG------ 118 (502)
Q Consensus 52 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 118 (502)
+..||.|...+...|++++|++.|++..+. .+ ..| ...+|..+..++...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666655321 00 112 12345556666666666666666666554421
Q ss_pred C-CCchhHHHHHHHHHHhC--CChhHHHHHHhhcCC-CC-CeeeHHHHHHH---HHhcCCHHHHHHHHHccCC---CChh
Q 046039 119 L-EFDQFIHNTIIYMYANC--GFLSEARLMFDEVDT-EF-DVVAWNSMIIG---LAKCGEIDESRRLFDKMVS---RNTV 187 (502)
Q Consensus 119 ~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~-~~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~---~~~~ 187 (502)
. .....++..+..++... +++++|...|++... .| ++..+..+..+ +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 0 01233444444443332 345666666655432 22 22233333222 2233444445554444321 2233
Q ss_pred hHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 188 SWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 188 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333222 234455555555554443 3444455555555555555555555555555443 22334444444
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
.+|...+....+... ..........+.++.|...+++..+.+. .+..++..+...+...|++++|+.
T Consensus 289 ~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHH
Confidence 443221111000000 0000001112345677788877776532 244566777888888899999999
Q ss_pred HHHHhhhhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 344 YFTLMTETYKIKPSI--KHYSCMVD-ALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
.|++.... ...+.. ..+..+.. .+...|+.++|+..|++... .|+..... +....+..++++.++.
T Consensus 356 ~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 356 YFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHh
Confidence 99888764 222221 12233332 23467889999988877643 34432222 2234566778888889
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEE
Q 046039 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLI 464 (502)
Q Consensus 420 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 464 (502)
+|+++.++..|+.+|...|++++|++.+++..+.+.......+|+
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999999998776655555554
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=7.7e-17 Score=164.17 Aligned_cols=392 Identities=12% Similarity=0.108 Sum_probs=295.9
Q ss_pred HHHHHHHHhCC--CCChHHHHHHHHhhhCCCCChhHHHHHhccCCC-C-----CcchHHHHHHHHhcCCChHHHHHHHHH
Q 046039 6 KIHAHLIKTGL--AKDPIAASRILAFCTSPAGDINYAYLVFTQIKK-P-----NLFIWNTIIRGFSQSSTPRNAILLFID 77 (502)
Q Consensus 6 ~i~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~ 77 (502)
++.++.....+ .-++.-.......| +..|.+.+|+.+++++.- | +....+.++.+..+. +..+..+..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf-~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAF-MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHH-HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 44455444443 23455556677777 788999999999998763 2 235566777777776 55666666655
Q ss_pred hHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeee
Q 046039 78 MLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA 157 (502)
Q Consensus 78 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 157 (502)
.... + ...+...+...|.+++|..+|++.. ......+.+ +...|++++|.++.++.. +..+
T Consensus 1047 Ld~~-----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn---~p~v 1107 (1630)
T 1xi4_A 1047 LDNY-----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN---EPAV 1107 (1630)
T ss_pred hhhc-----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC---CHHH
Confidence 5421 1 3446777888999999999998862 122222333 227788999999998764 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 237 (502)
|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 999999999999999999999775 678888899999999999999999999887764 3333344588889999888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
+....+. + .++...+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|++.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 8644442 2 345566777999999999999999999986 48999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 046039 318 LKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGS 395 (502)
Q Consensus 318 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 395 (502)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++....- + ....|.-
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 35688999999999999999998876543 235667778999999999999999999887642 3 3446766
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHH
Q 046039 396 LLSACRKH--GNIEMAKQAAKQIIELDK-----NESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 396 l~~~~~~~--~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
+...|.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+++.|...
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77777664 356666667766666555 6778899999999999999999853
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=4.2e-19 Score=162.87 Aligned_cols=258 Identities=11% Similarity=-0.068 Sum_probs=177.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 3344444444444444455555555554444432 2234444444444555
Q ss_pred cCChHHHHHHHhcCCCCC---cchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 269 CGCPERALQVFNTVPKKG---LSCWNSM--------------VF-GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLT 330 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~---~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 330 (502)
.|++++|...++++.+.+ ...+..+ .. .+...|++++|...++++.+... .+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 555555554444433221 1111111 22 36678899999999999988643 36788899999
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~ 408 (502)
.+...|++++|...++.+... .+.+...+..++..+...|++++|...|+++.. .| +...+..++.++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999874 345678889999999999999999999988754 24 67789999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 409 AKQAAKQIIELDKN------------ESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 409 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
|.+.++++++..|+ ++..+..++.++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999 78899999999999999999999887654
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.5e-17 Score=161.58 Aligned_cols=396 Identities=10% Similarity=0.025 Sum_probs=270.0
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHH-hcCCChHHHHH----H
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGF-SQSSTPRNAIL----L 74 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~-~~~~~~~~a~~----~ 74 (502)
+.++.+++.+.+. .|-+...|..++..+ .+.|+++.|..+|++... |+...|...+... ...|+.+.|.+ +
T Consensus 29 ~~a~~~~e~al~~-~P~~~~~w~~~~~~~-~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 29 DKARKTYERLVAQ-FPSSGRFWKLYIEAE-IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4678889998875 344566788888888 889999999999999887 8777787777533 45677777665 7
Q ss_pred HHHhHhcCCCCCC-cccHHHHHHHHHh---------cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHH
Q 046039 75 FIDMLVTSPIQPQ-RLTYPSLFKAYAQ---------LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARL 144 (502)
Q Consensus 75 ~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 144 (502)
|+......|..|+ ...|...+..... .|+++.|..+|++.++........+|..........|. ..+..
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHH
Confidence 7777654355444 4467777766544 68899999999999883111112344333322111111 11111
Q ss_pred HHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHc----------c---CCCC--------hhhHHHHHHHHHhC----
Q 046039 145 MFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK----------M---VSRN--------TVSWNSMISGYVRN---- 199 (502)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~---~~~~--------~~~~~~l~~~~~~~---- 199 (502)
++.. +.+++..|..++.. . ..|+ ...|...+......
T Consensus 186 ~l~~------------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 186 MIED------------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHT------------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHH------------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 1111 11223333333322 1 0111 12444444332221
Q ss_pred CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCchH-------HHHHHHHHHHHcCCCCchhHHHH
Q 046039 200 VKF----KEALELFREMQEQNIKPSEFTMVSLLNACAK-------LGAIR-------QGEWIHNFLVTNCFELNTIVVTA 261 (502)
Q Consensus 200 ~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 261 (502)
++. +++..+|++++... +.+...|...+..+.. .|+++ +|..++++..+.-.+.+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 46778888887763 5567777777777664 68876 88888888886323456778888
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCC---c-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCC
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKKG---L-SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA-CNHSG 336 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~ 336 (502)
++..+.+.|++++|..+|+++.+.+ . ..|..++..+.+.|++++|..+|++..+... .+...+...+.. +...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 8888889999999999998766532 2 3788888888889999999999999988632 233333332222 33589
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P--DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
++++|..+|+...+.. +.+...+..++..+.+.|+.++|..+|+++... | ....|...+......|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998752 446788899999999999999999999987542 2 2448888899899999999999
Q ss_pred HHHHHHHhcCCC
Q 046039 411 QAAKQIIELDKN 422 (502)
Q Consensus 411 ~~~~~~~~~~p~ 422 (502)
.+++++.+..|+
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999998884
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.1e-17 Score=149.88 Aligned_cols=268 Identities=13% Similarity=0.082 Sum_probs=207.7
Q ss_pred HHHhcCCHHHHHHHHHccCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 046039 164 GLAKCGEIDESRRLFDKMVSRNT----VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (502)
-....|++..|+..++.....++ .....+..+|...|+++.|+..++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 34456777777777776644332 2445567888889999888876654 2 36677788888888888899999
Q ss_pred HHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046039 240 GEWIHNFLVTNCF-ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL 318 (502)
Q Consensus 240 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 318 (502)
|.+.++++...+. +.++..+..+...+...|++++|+..+++ ..+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 9999999887764 33566677788899999999999999998 4567788899999999999999999999998864
Q ss_pred CCCHHHH---HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHH
Q 046039 319 KPDYISF---IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIW 393 (502)
Q Consensus 319 ~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~ 393 (502)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.. .| ++.++
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 443211 22334445668999999999999884 466788899999999999999999999998764 35 67789
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 394 GSLLSACRKHGNIEM-AKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
..++..+...|+.++ +.++++++++++|+++.+.. ...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 999999999999875 67899999999999986654 3444555555544
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4.8e-16 Score=158.45 Aligned_cols=349 Identities=13% Similarity=0.109 Sum_probs=269.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCC-CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSP-IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
-...+.+|...|.+.+|++++++...... ..-+...-+.++.+..+. +..+..++....... + ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 34556777888888888888888874311 112233455566666666 556666666555421 1 33477888
Q ss_pred HhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH-hcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA-KCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
...|.+++|..+|++.. .+...+..+. ..+++++|.++.++. .++.+|..+..++...|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~------~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD------VNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcC------CHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 88999999999999864 2222233333 788999999999877 44778889999999999999999999664
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH
Q 046039 213 QEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNS 292 (502)
Q Consensus 213 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 292 (502)
.|...|..++.++.+.|+++++.+++....+.. +++.+.+.++.+|++.+++++...++ ...+...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 467788889999999999999999999888765 34444456899999999998755554 3445567778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG 372 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (502)
++..|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.. +..+|..+..+|...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhh
Confidence 999999999999999999884 478899999999999999999998762 5688888999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CCchHHHHHHH
Q 046039 373 LLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS--YQFEEAMEERL 448 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 448 (502)
++..|......+. .++..+..++..|.+.|.+++|+.+++.++.++|.+..++.-|+.+|.+- ++..++.++|.
T Consensus 1265 Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999877654 34556778999999999999999999999999999999998888887764 44444444443
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.1e-18 Score=153.48 Aligned_cols=247 Identities=8% Similarity=0.021 Sum_probs=202.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSE--FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (502)
++-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999999876543 3433 3556778899999999999876654 23567888899999999999
Q ss_pred ChHHHHHHHhcCCC----C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 271 CPERALQVFNTVPK----K-GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 271 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
+.++|++.++++.. + ++..+..+...+...|++++|+..+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 2 455778888999999999999999987 457788999999999999999999999
Q ss_pred HHhhhhcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 346 TLMTETYKIKPSIKHY---SCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
+.+.+. .|+.... ..++..+...|++++|..+|+++... .++..|+.++.++.+.|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 2443211 22334445569999999999998652 478899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchH-HHHHHHHhhhcC
Q 046039 421 KNESCGYVLMSNLYAASYQFEE-AMEERLLMKEVK 454 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 454 (502)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568888887543
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.2e-18 Score=156.52 Aligned_cols=369 Identities=11% Similarity=0.057 Sum_probs=184.6
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
++|....+.+ +++.+|..+...+ .+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+.
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~-l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHH-HHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3455555555 4456999888888 9999999999999765 67779999999999999999999977777653
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSM 161 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 161 (502)
.+++.+...++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+. .|..+
T Consensus 91 ---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------n~~~L 154 (449)
T 1b89_A 91 ---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRL 154 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------CHHHH
T ss_pred ---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------hHHHH
Confidence 4557788999999999999999988884 3677899999999999999999999999884 89999
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 046039 162 IIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGE 241 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 241 (502)
+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.+.|.++++.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999 48999999999999999999996655542 233344557889999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHHHHHHHhcCCC--------CCcchHHHHHHHHHhcCChHHHHHHHH
Q 046039 242 WIHNFLVTNCFELNTIVVTAIIDMYCKC--GCPERALQVFNTVPK--------KGLSCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
.+++...... +-....|+-|..+|++- ++..+.++.|..-.. .+...|..+.-.|...++++.|...
T Consensus 228 ~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t-- 304 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT-- 304 (449)
T ss_dssp HHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 9999998765 55677788887777764 455666666654332 1345899999999999999998874
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----
Q 046039 312 GLQSS-NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS---- 386 (502)
Q Consensus 312 ~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 386 (502)
|.+. ...-+...|..++.--....-+-+|+.++- .. .+...+.|+.++...=|...+..+|++...
T Consensus 305 -m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~ 375 (449)
T 1b89_A 305 -MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 375 (449)
T ss_dssp -HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred -HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHH
Confidence 4443 122344555555443333323334444433 21 222355566666666666666666665532
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 387 ---------DPDAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 387 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
..+..+=.++-..|....+++.-..-.+
T Consensus 376 ~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 376 KPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2233333455556667777665554443
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.3e-18 Score=159.57 Aligned_cols=272 Identities=11% Similarity=-0.084 Sum_probs=162.6
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHH
Q 046039 51 NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTII 130 (502)
Q Consensus 51 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 130 (502)
+...|..+...+.+.|++++|+..|+.+.+. .+.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4455677777777777777777777777664 23345567777777777777777777777777764 33566677777
Q ss_pred HHHHhCCChhHHHHHHhhcCC-CCC-eeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDT-EFD-VVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 208 (502)
.+|...|++++|...|+++.. .|+ ...+..+ ......+..+...+...|++++|+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK---------------------KGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhh---------------------ccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 777777777777777766542 111 1111100 00122233445566666666666666
Q ss_pred HHHHHHCCCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 046039 209 FREMQEQNIKP--SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK-- 284 (502)
Q Consensus 209 ~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 284 (502)
|+++.+.. +. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 200 ~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 YLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666653 22 45666666666666667777766666666654 33456666666666677777777766665543
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 285 -KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-----------PDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 285 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
.+..+|..+..+|...|++++|...|+++.+.... .+...+..+..++...|+.+.+....+.-
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 23446666777777777777777777776653211 12466777778888888888887776653
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-16 Score=154.69 Aligned_cols=382 Identities=10% Similarity=-0.026 Sum_probs=235.1
Q ss_pred ChHHHHHHHHhhhCCCCChhHHHHHhccCCC------------CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcC---C
Q 046039 19 DPIAASRILAFCTSPAGDINYAYLVFTQIKK------------PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTS---P 83 (502)
Q Consensus 19 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~ 83 (502)
....||.+-..+ ...|++++|++.|++..+ ....+|+.+..+|...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~-~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLK-HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 355677666666 889999999999987532 234578999999999999999999999876421 1
Q ss_pred C--CCC-cccHHHHHHHHHh--cCCchhHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCChhHHHHHHhhcCC--CC
Q 046039 84 I--QPQ-RLTYPSLFKAYAQ--LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM---YANCGFLSEARLMFDEVDT--EF 153 (502)
Q Consensus 84 ~--~p~-~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--~~ 153 (502)
- .++ ..++.....++.. .+++++|+..|++.++..+ -++..+..+..+ +...++.++|.+.+++... +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 111 2345555445544 4578999999999999753 356666555555 4456788888888877543 34
Q ss_pred CeeeHHHHHHHHHh----cCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 154 DVVAWNSMIIGLAK----CGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVS 226 (502)
Q Consensus 154 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 226 (502)
+...+..+...+.. .++.++|.+.+++... .+..++..+...|...|++++|+..+++..+.. |.+...+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 45556555555544 5677899999988733 467788999999999999999999999999875 556777777
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh
Q 046039 227 LLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYE 303 (502)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 303 (502)
+..++...+.... ... . ..........+.++.|...+++..+ ....++..+...+...|++
T Consensus 287 lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 7666543211110 000 0 0001111122335667777766543 3456888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 046039 304 NEAIKLFSGLQSSNLKPDYI--SFIAVLT-ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
++|+..|++..+....|... .+..+.. .....|++++|+..|++..+. .|+....... ...+..+
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHH
Confidence 99999999998865443322 2222222 235678999999999998753 4443322222 2233334
Q ss_pred HHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 381 IRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 381 ~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+++... . .++.+|..++.+|...|++++|++.|+++++++|.+|.....+|
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 433321 2 36679999999999999999999999999999999888776655
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.2e-17 Score=153.09 Aligned_cols=261 Identities=8% Similarity=-0.025 Sum_probs=176.9
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 156 VAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA 232 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 232 (502)
..+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3445555555556666666666655522 245566666677777777777777777776654 445666666777777
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCChHHHHHHHhcCCC---CCcchHHHHH
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAI--------------ID-MYCKCGCPERALQVFNTVPK---KGLSCWNSMV 294 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 294 (502)
..|++++|...++.+.+... .+...+..+ .. .+...|++++|...++++.+ .+...+..++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 77777777777777766532 122222222 22 35566777777777776543 2345777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (502)
..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+. .+.+...+..+..+|.+.|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 88888888888888888877753 235677888888888888888888888888764 234567778888888888888
Q ss_pred HHHHHHHHhCCCC-C-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 375 EEAEKLIRSMPSD-P-------------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 375 ~~A~~~~~~~~~~-~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
++|...++++... | +...|..++.++...|++++|..+++++++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 8888888776431 3 356788888888899999999888887766443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9e-17 Score=141.81 Aligned_cols=223 Identities=13% Similarity=-0.001 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC--c----hhHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL--N----TIVVT 260 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 260 (502)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455666677777777777777777776665 566667777777777777777777777666543111 1 23444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
.+... +...|++++|+..|++.... .|+.. .+...|++++
T Consensus 84 ~l~~~-------------------------------~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNA-------------------------------YHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEK 123 (258)
T ss_dssp HHHHH-------------------------------HHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHH
T ss_pred HHHHH-------------------------------HHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHH
Confidence 44444 44445555555555444442 22321 2333455666
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 341 AKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
|...++.+.. ..+.+...+..++..+...|++++|...|+++.. ..+...|..++.++...|++++|+..++++++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666554 2222344555566666666666666666665543 12455666666666666666667776666666
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 419 LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 419 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666667766666666665543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.9e-16 Score=139.67 Aligned_cols=191 Identities=15% Similarity=0.039 Sum_probs=142.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 046039 223 TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGY 302 (502)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (502)
.+..+...+...|++++|..+++.+.+.. .+..+ |..++..+...|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------------------------------~~~~~~~~~~~~~ 53 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-------------------------------LNNRAAAEYEKGE 53 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-------------------------------HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-------------------------------HHHHHHHHHHccc
Confidence 44445555555555555555555555544 34444 4444455555555
Q ss_pred hHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 303 ENEAIKLFSGLQSSNL--KPD----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 303 ~~~a~~~~~~~~~~~~--~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+++|+..+++..+... .|+ ...+..+..++...|++++|...++.+... .|+. ..+...|++++
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHH
Confidence 5555555555544211 112 577888999999999999999999999865 3443 45667789999
Q ss_pred HHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 377 AEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 377 A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
|...++++... | +...+..++..+...|++++|...++++++..|+++.++..++.+|...|++++|+..++++.+..
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999987643 3 566888999999999999999999999999999999999999999999999999999999998765
Q ss_pred Cc
Q 046039 455 IE 456 (502)
Q Consensus 455 ~~ 456 (502)
..
T Consensus 204 ~~ 205 (258)
T 3uq3_A 204 PN 205 (258)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.5e-16 Score=136.27 Aligned_cols=196 Identities=13% Similarity=-0.004 Sum_probs=143.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 253 ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL 329 (502)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 329 (502)
+++...+..+...+.+.|++++|...|++..+. ++..|..+...+...|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 345556666666777777777777777765543 334666777777777777777777777777532 2556777777
Q ss_pred HHHhcC-----------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 046039 330 TACNHS-----------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLL 397 (502)
Q Consensus 330 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~ 397 (502)
.++... |++++|+..+++..+. .+.+...+..+..+|...|++++|+..|+++.. ..++..+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999998874 234577888899999999999999999988642 16778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887754
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=4e-16 Score=138.94 Aligned_cols=244 Identities=12% Similarity=0.016 Sum_probs=134.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHh
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVTAIIDMYCK 268 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 268 (502)
.....+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444444555555555555544432 22333444444444455555555555554444211111 1124444555555
Q ss_pred cCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 269 CGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544332 123355555555555555555555555555442 224455555552333344777777777
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPS----DPD------AIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~------~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
+.+.+. .+.+...+..+..++...|+ +++|...++++.. .|+ ...|..++..|...|++++|.+.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777653 23335566666677766666 6666666655432 133 24778899999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
++++++++|+++.+...+..+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999888877655443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.1e-15 Score=145.92 Aligned_cols=376 Identities=8% Similarity=-0.035 Sum_probs=230.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCc---hhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLA---RDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
.+...+.+.|++++|.++|+...+. | +...+..+...+...|+. ++|...|+...+. ++..+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 3556677788889999999888776 4 344455566666667777 8888888888754 455566666655
Q ss_pred HhCC-----ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHH---HHHHHHccC-CCChhhHHHHHHHHHhCCChHH
Q 046039 134 ANCG-----FLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDE---SRRLFDKMV-SRNTVSWNSMISGYVRNVKFKE 204 (502)
Q Consensus 134 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 204 (502)
...| ++++|...|++.....+...+..|...|...+..+. +.+.+.... ..++..+..+...|...+.+++
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 5554 678888888877655566677788877777655433 344444332 2356677778888888775555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CChHHHHH
Q 046039 205 ALELFREMQEQNIKPSEFTMVSLLNACAKLG---AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC----GCPERALQ 277 (502)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 277 (502)
+......+.+.-...++..+..+...+...| +.++|...|+...+.| +++...+..|...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4444333322111222236777777777788 8888888888888877 44555445677777554 68888888
Q ss_pred HHhcCCCCCcchHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHhh
Q 046039 278 VFNTVPKKGLSCWNSMVFG-L--AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG-----KVNQAKDYFTLMT 349 (502)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 349 (502)
.|++....++..+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++..
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8887773345577777776 4 45788888888888888766 5566666666665 44 8888888888765
Q ss_pred hhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 046039 350 ETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 421 (502)
+-++..+..|...|.. ..++++|..+|++.....++.....|...|.. ..++++|...|+++.+..+
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2355666667777665 33888888888887665566667777777764 4578888888888877655
Q ss_pred CCcchHHHHHHHHH--hcCCchHHHHHHHHhhh
Q 046039 422 NESCGYVLMSNLYA--ASYQFEEAMEERLLMKE 452 (502)
Q Consensus 422 ~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 452 (502)
.. ....+..+.. ..++.++|..+.++-.+
T Consensus 390 ~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 PE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 43 3333433322 23455666666655443
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=4.9e-16 Score=148.49 Aligned_cols=365 Identities=8% Similarity=-0.024 Sum_probs=214.2
Q ss_pred CCCCChhHHHHHhccCCC-CCcchHHHHHHHHhcCCCh---HHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcC-----
Q 046039 32 SPAGDINYAYLVFTQIKK-PNLFIWNTIIRGFSQSSTP---RNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLG----- 102 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----- 102 (502)
.+.|++++|.++|++..+ .+..++..|...+...|+. ++|+..|+...+ . ++..+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--T---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--C---CHHHHHHHHHHHHhCCCCCCc
Confidence 456788888888887655 4556666677777777777 788888877763 2 4455666666444444
Q ss_pred CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH---HHHHHhhcCCCCCeeeHHHHHHHHHhcC----CHHHHH
Q 046039 103 LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE---ARLMFDEVDTEFDVVAWNSMIIGLAKCG----EIDESR 175 (502)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 175 (502)
++++|...|+...+.|.. ..+..|...|...+..+. +.+.+.......++..+..+...|...+ ..+.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 667788888888776632 355666667766554333 3444444332345566667777777766 444555
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CchHHHHHHHHHHH
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNV---KFKEALELFREMQEQNIKPSEFTMVSLLNACAKL----GAIRQGEWIHNFLV 248 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~ 248 (502)
.+++.....++..+..|...|...| ++++|++.|++..+.| +++...+..+...|... +++++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 5666666666777788888888888 7888888888887777 56666556666666554 67788888887776
Q ss_pred HcCCCCchhHHHHHHHH-H--HhcCChHHHHHHHhcCCCC-CcchHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCC
Q 046039 249 TNCFELNTIVVTAIIDM-Y--CKCGCPERALQVFNTVPKK-GLSCWNSMVFGLAMNG-----YENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~ 319 (502)
. -++..+..|... | ...+++++|...|++..+. ++.++..+...|. .| ++++|+.+|++.. .|
T Consensus 245 -~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-- 316 (452)
T 3e4b_A 245 -P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-- 316 (452)
T ss_dssp -G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT--
T ss_pred -C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC--
Confidence 3 345556666665 3 4577888888888776654 3456677777666 44 7888888887776 32
Q ss_pred CCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHH
Q 046039 320 PDYISFIAVLTACNH----SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAI 391 (502)
Q Consensus 320 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 391 (502)
+......+...|.. ..++++|..+|+...+. | +......|..+|.. ..+.++|..+|+......+..
T Consensus 317 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 317 -EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp -CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred -CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45566666665554 33788888888877654 3 33445556666653 347788888887766543333
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 046039 392 IWGSLLSAC--RKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 392 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~ 418 (502)
....+.... ...++..+|....++..+
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 322222221 223345555555555544
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=6.3e-16 Score=137.84 Aligned_cols=241 Identities=10% Similarity=-0.046 Sum_probs=180.6
Q ss_pred hCCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 046039 198 RNVKFKEALELFREMQEQNI---KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPER 274 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (502)
..|++++|+..|+++.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45677888888888776531 1235566777777778888888888888877765 3456777778888888888888
Q ss_pred HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 275 ALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 275 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|...|+++.+ .+..++..++..+...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877654 34567888888899999999999999998875 344444444445556779999999999888764
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 352 YKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
.+++...+ .++..+...++.++|...++++... |. ...|..++.+|...|++++|...|+++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4677788888999999999888764 32 578899999999999999999999999999998765
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 046039 426 GYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 55788889999998765
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.7e-14 Score=128.37 Aligned_cols=225 Identities=9% Similarity=-0.027 Sum_probs=146.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVT 260 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (502)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666666666666652 233455555555555 666666666666655543 333444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM----NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-- 334 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 334 (502)
. +...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 79 ~-------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 L-------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp H-------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred H-------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 4 4444444 556666666666666543 45566666666666
Q ss_pred --CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 046039 335 --SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HG 404 (502)
Q Consensus 335 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 404 (502)
.+++++|..+|++..+. + +...+..+...|.. .+++++|...|++.....++..+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 67777777777776653 2 44555666666766 77777777777776554556677777777777 78
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHhhhcCC
Q 046039 405 NIEMAKQAAKQIIELDKNESCGYVLMSNLYAA----SYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 455 (502)
++++|+..|+++++.+| +..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888877755 5677778888887 7888888888887776654
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=3e-15 Score=138.61 Aligned_cols=247 Identities=9% Similarity=0.064 Sum_probs=202.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA-IRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
...|+.+..++.+.|++++|+..++++++.. +-+...|..+..++...|+ +++|...++++++.. +.+..++..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567888888889999999999999998875 5677888888888889996 999999999999876 447788888999
Q ss_pred HHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHH
Q 046039 265 MYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQ 340 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 340 (502)
++...|++++|+..|+++.+. +..+|..+..++...|++++|+..|+++++.+.. +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999887653 4558888999999999999999999999986543 67888888888888 566577
Q ss_pred H-----HHHHHHhhhhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------
Q 046039 341 A-----KDYFTLMTETYKIKPSIKHYSCMVDALGRAG--LLEEAEKLIRSMPSDP-DAIIWGSLLSACRKHG-------- 404 (502)
Q Consensus 341 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~-------- 404 (502)
| +..+++.... .+-+...|..+..++...| ++++|.+.+.++...| +...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 5788888763 2345778888888888888 6899999998883334 5678889999998874
Q ss_pred C-HHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 046039 405 N-IEMAKQAAKQI-IELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 405 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+ .++|+++|+++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999998776544
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=8.6e-16 Score=145.28 Aligned_cols=264 Identities=13% Similarity=-0.026 Sum_probs=152.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCC-CchhH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPS----EFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CFE-LNTIV 258 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 258 (502)
.+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++++.+. +.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444555555566666666665555542 222 234445555555556666666555554432 111 11334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCC--------------------hHHHHHH
Q 046039 259 VTAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGY--------------------ENEAIKL 309 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~--------------------~~~a~~~ 309 (502)
+..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 455555566666666666555544321 1 1255556666666666 6666666
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 046039 310 FSGLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 310 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
+++.... +..| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6554431 1111 1235666666777777777777777776543111111 23566677777777888877777
Q ss_pred HHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHH
Q 046039 381 IRSMPSD----PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 381 ~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
+++.... ++ ..++..++..|...|++++|...++++++..+.. ..++..++.+|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665421 11 4466777777788888888888888877654332 45677777788888888888887
Q ss_pred HHHhhh
Q 046039 447 RLLMKE 452 (502)
Q Consensus 447 ~~~~~~ 452 (502)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3.3e-14 Score=126.58 Aligned_cols=233 Identities=11% Similarity=-0.017 Sum_probs=176.5
Q ss_pred CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 153 FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSL 227 (502)
Q Consensus 153 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 227 (502)
.++.++..+...+...|++++|+..|++..++ ++.++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45567788889999999999999999998665 56788889999999 999999999999999876 67788888
Q ss_pred HHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 046039 228 LNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYE 303 (502)
Q Consensus 228 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (502)
...+.. .+++++|...+++..+.+ +...+..+...|.... ...+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCH
Confidence 888888 999999999999888764 4455555555555400 004555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHH
Q 046039 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLE 375 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 375 (502)
++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+...|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555555543 44555556666665 77888888888877664 2 45666777788888 88888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcc
Q 046039 376 EAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+|...|++.....+...+..+...|.. .+++++|.+.|+++++.+|+++.
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 888888877655457778888888888 88999999999999988886543
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.5e-15 Score=143.90 Aligned_cols=264 Identities=10% Similarity=-0.059 Sum_probs=181.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHcC-----CCCchhHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSE----FTMVSLLNACAKLGAIRQGEWIHNFLVTNC-----FELNTIVV 259 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 259 (502)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+..++...|++++|...++++.+.. .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345556666777777777777766653 2232 355666666667777777777776665431 12234556
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKK---------GLSCWNSMVFGLAMNGY-----------------ENEAIKLFSGL 313 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 313 (502)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66677777777777777776655432 12266667777777777 77777777765
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 314 QSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 314 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
.+. +..+ ....+..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 442 1111 2346777788888899999999999887653211111 236778888899999999999988876
Q ss_pred CCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 385 PSD----P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 385 ~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
... . ...++..++..+...|++++|...++++++..+.. ..++..++.+|...|++++|..++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 531 1 24577889999999999999999999998864432 447888999999999999999999887
Q ss_pred hhc
Q 046039 451 KEV 453 (502)
Q Consensus 451 ~~~ 453 (502)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.3e-15 Score=131.51 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACN 333 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 333 (502)
..+..+...+...|++++|...|+++.+. +...+..++..+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444455555555555555555544332 23355556666666666666666666666543 225566666677777
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
..|++++|...++.+.+. .+.+...+..++..+...|++++|...++++.. ..+...+..++..+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777653 234556666677777777777777777766543 1356677777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777777777777777777777777654
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=7.3e-15 Score=125.66 Aligned_cols=207 Identities=15% Similarity=0.052 Sum_probs=103.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
+++..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345566667777777777777777777777654 5566667777777777777777777777777664 33455566666
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
.++...+.. . .. .+...|++++|+..|++..+..+ -+...+..+..++...|++++|+.
T Consensus 81 ~~~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 81 EAYVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHH
Confidence 666655000 0 00 00112444444444444444321 133444444445555555555555
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046039 344 YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQI 416 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 416 (502)
.|++..+. . .+...+..+..+|...|++++|...|+++.. .| +...+..++.++...|++++|+..+++.
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555443 2 3444444555555555555555555554432 12 3444455555555555555555555443
No 49
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=5.3e-17 Score=160.45 Aligned_cols=149 Identities=10% Similarity=0.137 Sum_probs=122.9
Q ss_pred ChHHHHHHHHhhhCCCCChhHHHHHhccCC-------CCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccH
Q 046039 19 DPIAASRILAFCTSPAGDINYAYLVFTQIK-------KPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTY 91 (502)
Q Consensus 19 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 91 (502)
-..+||++|..| ++.|++++|..+|+.|. .||+.+||+||.+|++.|++++|.++|++|.+. |+.||..||
T Consensus 126 ~~~TynaLIdgl-cK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCC-LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 356899999999 99999999999997753 499999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC----CCeeeHHHHHHHHH
Q 046039 92 PSLFKAYAQLGLA-RDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE----FDVVAWNSMIIGLA 166 (502)
Q Consensus 92 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~ 166 (502)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++...+..+ |.+.+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999987776654444443333333221 22445556667777
Q ss_pred hcC
Q 046039 167 KCG 169 (502)
Q Consensus 167 ~~~ 169 (502)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 644
No 50
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=155.58 Aligned_cols=123 Identities=10% Similarity=0.112 Sum_probs=107.1
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHcc-------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 156 VAWNSMIIGLAKCGEIDESRRLFDKM-------VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLL 228 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 228 (502)
.+|+++|++|++.|++++|.++|+.| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 47888888888888888888888664 46899999999999999999999999999999999999999999999
Q ss_pred HHHhccCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 229 NACAKLGAI-RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 229 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999998776665444444433
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.5e-14 Score=128.66 Aligned_cols=230 Identities=11% Similarity=-0.027 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcc----hHHHHHH
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK--KGLS----CWNSMVF 295 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~ 295 (502)
..+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|+..++++.+ .+.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567778899999999999999999875 34566888899999999999999999998765 2222 4889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 046039 296 GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLE 375 (502)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (502)
.+...|++++|+..|++..+... .+...+..+..++...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998643 35678899999999999999999999999863 3445677777773444556999
Q ss_pred HHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCchH
Q 046039 376 EAEKLIRSMPS-DP-DAIIWGSLLSACRKHGN---IEMAKQAAKQIIELD---KNE-----SCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 376 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 442 (502)
+|...|+++.. .| +...+..++.++...|+ +++|...++++++.. |+. ..++..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998864 24 47788889999998888 888999999999865 442 2578889999999999999
Q ss_pred HHHHHHHhhhcCC
Q 046039 443 AMEERLLMKEVKI 455 (502)
Q Consensus 443 A~~~~~~~~~~~~ 455 (502)
|.++++++.+..+
T Consensus 240 A~~~~~~al~~~p 252 (272)
T 3u4t_A 240 ADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCc
Confidence 9999999986543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=3.8e-14 Score=124.48 Aligned_cols=205 Identities=14% Similarity=-0.011 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
.|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~---------- 106 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNAR---------- 106 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHH----------
Confidence 34444455555555555555555554432 3334444444444444444444444444444432 11222
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
.+..++..+...|++++|...++++...+..| +...+..+..++...|++++|...++
T Consensus 107 ---------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 107 ---------------------VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp ---------------------HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23333333444444444444444444311222 23444555555556666666666666
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.+.+. .+.+...+..++..|...|++++|...++++... .+...+..++..+...|++++|.+.++++++..|+++
T Consensus 166 ~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 166 KSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 65543 1223455555566666666666666666554331 2444555566666666666666666666666666655
Q ss_pred chH
Q 046039 425 CGY 427 (502)
Q Consensus 425 ~~~ 427 (502)
...
T Consensus 244 ~~~ 246 (252)
T 2ho1_A 244 EYQ 246 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.3e-14 Score=125.92 Aligned_cols=198 Identities=9% Similarity=-0.040 Sum_probs=162.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...|+++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566666666777777766665543 234567777788888888888888888887754 23678888899999
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A 409 (502)
...|++++|..+++.+... +..| +...+..++.+|...|++++|...++++.. .| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998862 3444 467788899999999999999999988764 24 578899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999987543
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=4e-15 Score=136.64 Aligned_cols=265 Identities=13% Similarity=-0.025 Sum_probs=182.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CC-CCchhHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPS----EFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CF-ELNTIVV 259 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 259 (502)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344556666777777777777766653 223 245556666667777777777776665542 11 1124456
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCC--------------------hHHHHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGY--------------------ENEAIKLF 310 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 310 (502)
..+...|...|++++|...+++..+. + ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 66677777777777777776654431 1 1266667777777777 77787777
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 046039 311 SGLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLI 381 (502)
Q Consensus 311 ~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 381 (502)
++.... +..| ....+..+...+...|++++|...++.......-.++ ...+..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765432 1111 2346777788888899999999999887653111111 336778888999999999999998
Q ss_pred HhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHH
Q 046039 382 RSMPSD----PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 382 ~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
++.... ++ ..++..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876531 22 4577889999999999999999999998865432 447889999999999999999999
Q ss_pred HHhhhcC
Q 046039 448 LLMKEVK 454 (502)
Q Consensus 448 ~~~~~~~ 454 (502)
+++.+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9987643
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=4.2e-15 Score=129.76 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=141.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------- 91 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAA-------- 91 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccch--------
Confidence 34456666666777777777777777776653 4456666666666666666666666666666543 2223
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 046039 265 MYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
..+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 92 -----------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 92 -----------------------TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 344455555666666666666666666643 23566777888888888999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
++++... .+.+...+..++..+.+.|++++|...|+++.. . .+..++..++.++...|++++|...++++++.+|+
T Consensus 148 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 148 LQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 8888764 244577788888899999999999999988754 2 35778999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHh
Q 046039 423 ESCGYVLMSNLYAA 436 (502)
Q Consensus 423 ~~~~~~~l~~~~~~ 436 (502)
++..+..++.+...
T Consensus 226 ~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 226 HMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHTC----
T ss_pred hHHHHHHHHHHHhh
Confidence 99888877755433
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2.3e-14 Score=119.26 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=142.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 286 GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
+...|..+...|...|++++|+..|++..+..+ -+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 345788888888889999999999998888643 36778888899999999999999999998764 344566777788
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 046039 366 DALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 443 (502)
..+...++++.|...+.+... .| +...+..++.++...|++++|++.|+++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888999999999999887754 23 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCC
Q 046039 444 MEERLLMKEVKI 455 (502)
Q Consensus 444 ~~~~~~~~~~~~ 455 (502)
++.+++..+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999999887543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.6e-14 Score=122.14 Aligned_cols=195 Identities=12% Similarity=-0.023 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACN 333 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 333 (502)
.++..+...+...|++++|...|+++.+ .+...+..++..+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3344444444444444444444443322 123345555556666666666666666666542 225566667777777
Q ss_pred cC-CCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 046039 334 HS-GKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 334 ~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A 409 (502)
.. |++++|...++.+... +..| +...+..+..++...|++++|...++++.. .| +...+..++..+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 77 7777777777777652 2223 255666777777777777777777776643 23 466777777778888888888
Q ss_pred HHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 410 KQAAKQIIELDK-NESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 410 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888777 77777777777777788888888777777644
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.7e-14 Score=133.46 Aligned_cols=227 Identities=8% Similarity=0.053 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCCCC---CcchHHHHHHH
Q 046039 221 EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC-PERALQVFNTVPKK---GLSCWNSMVFG 296 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~l~~~ 296 (502)
...|..+..++...|++++|...++++++.. +-+..++..+..++...|+ +++|+..|+++.+. +..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567777888889999999999999999986 4568889999999999997 99999999988763 45689999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh-cCCHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR-AGLLE 375 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 375 (502)
+...|++++|+..|+++++.+.. +...|..+..++...|++++|+..++++++. .+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999997543 7788999999999999999999999999974 34467889999999998 66657
Q ss_pred HH-----HHHHHhCCC-CC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 046039 376 EA-----EKLIRSMPS-DP-DAIIWGSLLSACRKHG--NIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY-------- 438 (502)
Q Consensus 376 ~A-----~~~~~~~~~-~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 438 (502)
+| +..|+++.. .| +...|..+...+...| ++++|++.+.++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 477776653 35 6779999999999888 689999999998 899999999999999999975
Q ss_pred -CchHHHHHHHHh-hh
Q 046039 439 -QFEEAMEERLLM-KE 452 (502)
Q Consensus 439 -~~~~A~~~~~~~-~~ 452 (502)
.+++|+++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 258999999998 54
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1e-13 Score=119.31 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
+..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~---------- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS---------- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC----------
Confidence 3445556666666666666666666665543 3345555555555556666666666665555442 112
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN-GYENEAIKLFSGLQSSNLKPD-YISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
..++..++..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 76 ---------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 76 ---------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ---------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 23455556666666 777777777777766322333 4667778888888889999999
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 344 YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.++.+.+. .+.+...+..++.++...|++++|...++++.. . .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888764 234577788888889999999999999887754 2 356677778888899999999999999999999
Q ss_pred CCCcchHHHH
Q 046039 421 KNESCGYVLM 430 (502)
Q Consensus 421 p~~~~~~~~l 430 (502)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9988776554
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=7.5e-15 Score=130.80 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=140.4
Q ss_pred cCCChHHHHHHHHHhHhcCCCC--CCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 046039 64 QSSTPRNAILLFIDMLVTSPIQ--PQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE 141 (502)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 141 (502)
..|++++|+..|+.+.+..... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4466777777777776541111 123456666666677777777777777776664 3356666666666767777776
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 046039 142 ARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE 221 (502)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 221 (502)
|...|++... ....+..++..+..++...|++++|...|+++.+.. |+.
T Consensus 96 A~~~~~~al~-----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~ 144 (275)
T 1xnf_A 96 AYEAFDSVLE-----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PND 144 (275)
T ss_dssp HHHHHHHHHH-----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHh-----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCC
Confidence 6666665441 112245556666666666666677776666666543 222
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc-------chHHHHH
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL-------SCWNSMV 294 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~ 294 (502)
......+..+...|++++|...+....... +++...+. ++..+...++.++|...+....+.++ ..|..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 233333334455566777777776666543 22333333 55556666666677777766655432 4566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
..+...|++++|...|++..... |+. +.....++...|++++|++.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777777643 321 112233445556666666654
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=9.1e-12 Score=123.03 Aligned_cols=413 Identities=9% Similarity=-0.023 Sum_probs=288.8
Q ss_pred HHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCC---hHHHHHHHHHhHhc
Q 046039 8 HAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSST---PRNAILLFIDMLVT 81 (502)
Q Consensus 8 ~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~ 81 (502)
++..++.. +-|...|..++..+ .+.++++.+..+|+.+.. .....|...+..-.+.++ ++.+..+|+.....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~-~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHH-VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444443 56899999999998 788999999999999876 345678888888888888 99999999999975
Q ss_pred CCCCCCcccHHHHHHHHHhcCCc--------hhHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh---------CCChhH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLA--------RDGAQLHGRVVK-QGL-EF-DQFIHNTIIYMYAN---------CGFLSE 141 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~ 141 (502)
...+|+...|..-+....+.++. +.+.++|+..+. .|. .+ +..+|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 22248888888877766665554 334577777665 455 44 35678777766543 345778
Q ss_pred HHHHHhhcCCCCCe---eeHHHHHHHHHh-------------cCCHHHHHHHHHcc-------CC--CC-----------
Q 046039 142 ARLMFDEVDTEFDV---VAWNSMIIGLAK-------------CGEIDESRRLFDKM-------VS--RN----------- 185 (502)
Q Consensus 142 a~~~~~~~~~~~~~---~~~~~l~~~~~~-------------~~~~~~a~~~~~~~-------~~--~~----------- 185 (502)
+..+|++...-|.. .+|......-.. ..+++.|...+.++ .. |.
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 89999988753322 223221111111 11233344444331 10 00
Q ss_pred ---------hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH-HHHHHHH
Q 046039 186 ---------TVSWNSMISGYVRNV-------KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGE-WIHNFLV 248 (502)
Q Consensus 186 ---------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~ 248 (502)
...|...+..--..+ ..+.+..+|++++.. ++-+...|...+.-+...|+.+.|. .++++..
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 123444444333322 134566788888876 3667888888888888889999996 9999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------------------------CcchHHHHHHHHHhcCCh
Q 046039 249 TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-------------------------GLSCWNSMVFGLAMNGYE 303 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~g~~ 303 (502)
... +.+...+-..+....+.|+++.|..+|+++... ....|...+....+.|+.
T Consensus 372 ~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 372 QCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 754 556667777888888999999999999887642 112688888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHS-GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
+.|..+|.+.++....+....|...+..-.+. ++.+.|..+|+...+. ++.+...+...+......|+.+.|..+|+
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998861122334444333332333 4589999999999985 44566677788888888999999999999
Q ss_pred hCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 383 SMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 383 ~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+.... | ....|...+..-.+.|+.+.+..+.+++.+..|+++.+
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 98764 4 24578888888899999999999999999999998754
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=1.2e-14 Score=139.70 Aligned_cols=192 Identities=11% Similarity=-0.020 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCP-ERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLT 330 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 330 (502)
+...+..+...|...|++ ++|+..|++..+ .+..+|..+...|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344444444455555555 555555544332 22346666777777777888888888888775 466788888888
Q ss_pred HHhcC---------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhCCC-CC----
Q 046039 331 ACNHS---------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA--------GLLEEAEKLIRSMPS-DP---- 388 (502)
Q Consensus 331 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~~---- 388 (502)
++... |++++|+..+++..+. .+.+...|..+..+|... |++++|...|+++.. .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 89888 9999999999999874 244578888999999988 999999999998865 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
+...|..++.+|...|++++|.+.|+++++++|+++..+..++.++...|++++|++.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999999755443
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=136.41 Aligned_cols=295 Identities=12% Similarity=-0.006 Sum_probs=178.4
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCC
Q 046039 122 DQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNV 200 (502)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (502)
....+......+...|++++|...|++... .|+.... -..++..+...+...|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~l~~~~~~~g 61 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------------------LSAIYSQLGNAYFYLH 61 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH--------------------------HHHHHHHHHHHHHHhc
Confidence 344455556666666666666666665432 1111000 0123444455555555
Q ss_pred ChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHhcC
Q 046039 201 KFKEALELFREMQEQ----NIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g 270 (502)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.... ....++..+...|...|
T Consensus 62 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 555555555544321 1111 1233444455555555555555555554432100 01234555555555566
Q ss_pred C--------------------hHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC
Q 046039 271 C--------------------PERALQVFNTVPKK---------GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL-KP 320 (502)
Q Consensus 271 ~--------------------~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p 320 (502)
+ +++|...+++..+. ...++..+...+...|++++|+..+++..+... .+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 6 55555555443221 122566777777888888888888777664210 11
Q ss_pred C----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C
Q 046039 321 D----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P 388 (502)
Q Consensus 321 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 388 (502)
+ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++...- +
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 236777888888999999999999887643111111 457778889999999999999998876531 2
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchH
Q 046039 389 D----AIIWGSLLSACRKHGNIEMAKQAAKQIIELD------KNESCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 389 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 442 (502)
+ ..++..++..|...|++++|.+.+++++++. +....++..++.++...|+...
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 2 5578889999999999999999999999853 3335678889999988887643
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=9e-14 Score=131.68 Aligned_cols=267 Identities=12% Similarity=-0.022 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhhcCC-CCC-e----eeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 046039 125 IHNTIIYMYANCGFLSEARLMFDEVDT-EFD-V----VAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVR 198 (502)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 198 (502)
.+..+...+...|++++|...|++... .|+ . ..|..+...+...|++++|+..+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------- 109 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYH-------------------- 109 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHH--------------------
Confidence 344556666777777777777766542 121 1 23444444444455555555444
Q ss_pred CCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHh
Q 046039 199 NVKFKEALELFREMQEQ----N-IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-----FELNTIVVTAIIDMYCK 268 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 268 (502)
++..+. + .+.....+..+...+...|++++|...++++.+.. .+....++..+...|..
T Consensus 110 -----------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 110 -----------KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 443321 0 01122334444444445555555555544444321 01123344445555555
Q ss_pred cCC-----------------hHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC
Q 046039 269 CGC-----------------PERALQVFNTVPKK---------GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PD 321 (502)
Q Consensus 269 ~g~-----------------~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~ 321 (502)
.|+ +++|...+++..+. ...++..+...+...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555443221 1225666777777777777777777776552110 11
Q ss_pred ----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C-
Q 046039 322 ----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK----PSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P- 388 (502)
Q Consensus 322 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~- 388 (502)
...+..+..++...|++++|...+++......-. .....+..+..+|...|++++|...+++.... +
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2367778888889999999999998876532111 11466778888999999999999999877531 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 389 ---DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 389 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
...++..++.+|...|++++|.+.+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2447788999999999999999999999987654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=3.4e-12 Score=115.50 Aligned_cols=220 Identities=11% Similarity=0.039 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACA-------KLGAI-------RQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
++|...|+++++.. +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 556666666665554 24664 6777777777763223345567777777777
Q ss_pred cCChHHHHHHHhcCCCCC---cc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcCCCHHHHHH
Q 046039 269 CGCPERALQVFNTVPKKG---LS-CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC-NHSGKVNQAKD 343 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 343 (502)
.|++++|..+|+++.+.+ .. .|..++..+.+.|++++|..+|++..+.+. ++...|...+... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777665432 22 677777777777778888888877776532 2334444333332 23578888888
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 344 YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS----DP--DAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
+|+...+. .+.+...+..++..+.+.|++++|..+|+++.. .| ....|..++..+.+.|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877764 234566777777777778888888888877654 22 34577777777777888888888888888
Q ss_pred hcCCCCcch
Q 046039 418 ELDKNESCG 426 (502)
Q Consensus 418 ~~~p~~~~~ 426 (502)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 877775543
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2.4e-13 Score=127.40 Aligned_cols=227 Identities=8% Similarity=-0.028 Sum_probs=118.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC------CchhHHH
Q 046039 192 MISGYVRNVKFKEALELFREMQEQ----NIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE------LNTIVVT 260 (502)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 260 (502)
....+...|++++|+..|++..+. +-++ ...++..+..++...|+++.|...+.+..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777777777777777653 1111 2345666667777777777777777766653111 1133455
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSS----NL-KPDYISFI 326 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~ 326 (502)
.+..+|...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666666666666666554321 0 114555555555566666666555555441 11 22234455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETY---KIKPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPSDPD-AIIWGSLLSA 399 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 399 (502)
.+..++...|++++|...+++..... +.+.....+..+...|...|+ +++|..++++....|+ ...+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 55555556666666666655544321 011111223344455555555 5555555555532222 2244445555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 046039 400 CRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~ 418 (502)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=127.99 Aligned_cols=243 Identities=12% Similarity=0.069 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------C-
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQ-------NIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN------C- 251 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 251 (502)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888899999999999999888763 22344566777888888889999988888887764 1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
.+....++..+...|...|++++|...|+++.+. .+.............+..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcCCCChHHHHHHHHHHHH
Confidence 1223455666677777777777777766654321 0000000001112334444444
Q ss_pred HhcCCCHHHHHHHHHHhhhhc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C-------
Q 046039 332 CNHSGKVNQAKDYFTLMTETY------KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----------P------- 388 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~------- 388 (502)
+...|++++|..+++.+.... ..+.....+..+..+|...|++++|...++++... +
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 555555555555555543320 01112334444555555555555555555444310 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
....+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222233334445555566666666666666666777777777777777777777766654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.1e-13 Score=113.41 Aligned_cols=167 Identities=15% Similarity=0.060 Sum_probs=129.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
++.+|..+...|...|++++|+..|++..+ .++.+|..+..+|...|++++|+..+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 445566666666666666666666665543 2344667777777777888888888877776533 356677777788
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A 409 (502)
+...++++.+...+...... .+.+...+..+..+|.+.|++++|++.|+++.. .| +..+|..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999998763 345577888899999999999999999988764 34 677899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 046039 410 KQAAKQIIELDKNES 424 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~ 424 (502)
++.|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=6.2e-13 Score=121.91 Aligned_cols=235 Identities=13% Similarity=0.034 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-----Cchh
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQ----NIK-PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTI 257 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 257 (502)
.+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..+.... ....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555544321 101 11334444555555555555555555554432100 0122
Q ss_pred HHHHHHHHHHhcCC--------------------hHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHH
Q 046039 258 VVTAIIDMYCKCGC--------------------PERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 258 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
++..+...|...|+ +++|...+++.... + ..++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555555 55555555443221 1 2256667777777788888887
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHH
Q 046039 309 LFSGLQSSNL-KPD----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 309 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
.+++..+... .++ ..++..+...+...|++++|...++.......-..+ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777654210 011 236777788888889999999988887643111111 4567778888999999999999
Q ss_pred HHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 380 LIRSMPSD----PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 380 ~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.++++... ++ ..++..++..|...|++++|...+++++++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 98876531 22 447788999999999999999999999987654
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=3.4e-13 Score=116.37 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=95.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|+..++...+. .+.+...+..+..+|
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 344444444455555555555555444332234444444555555555555555555555431 122344444555555
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhc
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DA-------IIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--ESCGYVLMSNLYAAS 437 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~ 437 (502)
...|++++|...|++... .| +. ..|..++..+...|++++|++.|+++++.+|+ ++..+..++.+|...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 555555555555544432 12 22 23444555555555555555555555555555 555555555555555
Q ss_pred CCc---------------------------hHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHH
Q 046039 438 YQF---------------------------EEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLL 490 (502)
Q Consensus 438 g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 490 (502)
|+. ++|+..+++..+. .|++.++...+
T Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------------------------~p~~~~~~~~l 220 (228)
T 4i17_A 167 GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------------------------SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------CCCCHHHHHHH
Confidence 544 8888888887743 56667777777
Q ss_pred HHHHHH
Q 046039 491 NDLGLL 496 (502)
Q Consensus 491 ~~~~~~ 496 (502)
+++...
T Consensus 221 ~~i~~~ 226 (228)
T 4i17_A 221 DQVKAM 226 (228)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 776543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=2.6e-13 Score=127.15 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=176.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCC----C------cchHH
Q 046039 227 LLNACAKLGAIRQGEWIHNFLVTN----CFEL-NTIVVTAIIDMYCKCGCPERALQVFNTVPKK----G------LSCWN 291 (502)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~------~~~~~ 291 (502)
....+...|++++|...+++..+. +.++ ...++..+...|...|+++.|...+.+..+. + ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566678899999999999999874 1111 3567888999999999999999988876531 1 23788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CC-CCChhHHH
Q 046039 292 SMVFGLAMNGYENEAIKLFSGLQSSNLK-PD----YISFIAVLTACNHSGKVNQAKDYFTLMTETY---KI-KPSIKHYS 362 (502)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 362 (502)
.+...|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753111 11 2478888999999999999999999987621 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC----CC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPSD----PD---AIIWGSLLSACRKHGN---IEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
.+..+|.+.|++++|...+++...- ++ ...+..+...+...|+ +++|+.++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887531 22 2235678888889999 77777777776 334555668889999
Q ss_pred HHHhcCCchHHHHHHHHhhhc
Q 046039 433 LYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+|...|++++|..++++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=9.3e-13 Score=131.65 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=140.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
.+|+.|...|.+.|++++|+..|++..+... -+...+..+..++.+.|++++|+..|++..+. -+-+...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4677788888888888888888888887532 25678888999999999999999999998864 23357888999999
Q ss_pred HHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 368 LGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
|.+.|++++|++.|+++.. .| +...|..++.+|...|++++|++.|+++++++|+++..+..++.+|...|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 9999999999999988764 34 677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 046039 446 ERLLMKE 452 (502)
Q Consensus 446 ~~~~~~~ 452 (502)
.++++.+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=2e-11 Score=113.84 Aligned_cols=263 Identities=11% Similarity=-0.041 Sum_probs=167.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCchHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKPSEF----TMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-LN----TIVVTA 261 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 261 (502)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+.... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455666777777777777766653222221 3445556666777777777777776653211 11 223455
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-----C------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHH
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKK-----G------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK----PDYISFI 326 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~-----~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~ 326 (502)
+...+...|++++|...+++..+. + ...+..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666777778887777777654321 1 124555677777888888888888777653221 1234566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS-----CMVDALGRAGLLEEAEKLIRSMPSD-PD-----AIIWGS 395 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~ 395 (502)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.... |. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777778888888888888888764311111111111 2334467888888888888887642 21 234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKN------ESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...+...|++++|...++++++..+. ....+..++.++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888888999998888888764322 1236677788888889998888888777643
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.2e-11 Score=111.87 Aligned_cols=214 Identities=5% Similarity=-0.088 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHHhcCCC-C---CcchHHHHHHHHHh
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYC-------KCGCP-------ERALQVFNTVPK-K---GLSCWNSMVFGLAM 299 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~---~~~~~~~l~~~~~~ 299 (502)
++|..+|++++... +.++..+..++..+. +.|++ ++|..+|++..+ . +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999998864 557778888887775 35886 899999998765 2 34589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPD-YI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG-RAGLLEE 376 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 376 (502)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 443 33 7888888899999999999999999863 2344555544433322 3799999
Q ss_pred HHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 377 AEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIEL---DKN-ESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 377 A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|..+|+++... | +...|..++..+.+.|++++|..+|+++++. .|+ ...++..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988642 4 6788999999999999999999999999995 453 6778999999999999999999999999
Q ss_pred hhcCCc
Q 046039 451 KEVKIE 456 (502)
Q Consensus 451 ~~~~~~ 456 (502)
.+..++
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 877654
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=6.9e-13 Score=127.50 Aligned_cols=198 Identities=16% Similarity=0.025 Sum_probs=167.0
Q ss_pred hHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 272 PERALQVFNTVPK---KGLSCWNSMVFGLAMNGYE-NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 272 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
++++...++.... .+...+..+...+...|++ ++|+..|++..+... .+...+..+..++...|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555566654433 3456888999999999999 999999999998643 3578899999999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc--------CCHHH
Q 046039 348 MTETYKIKPSIKHYSCMVDALGRA---------GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH--------GNIEM 408 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~--------~~~~~ 408 (502)
..+. .|+...+..+..+|... |++++|...|+++.. .| +...|..++.+|... |++++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9854 57778889999999999 999999999998764 34 678999999999999 99999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchH
Q 046039 409 AKQAAKQIIELDK---NESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPE 485 (502)
Q Consensus 409 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 485 (502)
|+..|+++++++| +++.++..++.+|...|++++|++.++++.+. .|+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~ 293 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------------------------DPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHH
Confidence 9999999999999 99999999999999999999999999998754 345556
Q ss_pred HHHHHHHHHHHHHh
Q 046039 486 VYLLLNDLGLLIQE 499 (502)
Q Consensus 486 ~~~~l~~~~~~~~~ 499 (502)
.+..++.++..+++
T Consensus 294 a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 294 PQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665554
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.3e-12 Score=108.52 Aligned_cols=162 Identities=15% Similarity=0.077 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3334444455555555555555544432 224556666666667777777777777776653 2334566667777777
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
..|++++|...++++.. ..+...+..++..+...|++++|...++++++..|+++.++..++.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776643 2356677888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhhcC
Q 046039 448 LLMKEVK 454 (502)
Q Consensus 448 ~~~~~~~ 454 (502)
+++.+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8876654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.2e-11 Score=115.52 Aligned_cols=227 Identities=8% Similarity=-0.023 Sum_probs=132.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC-----C-CchhHH
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNI-KP----SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF-----E-LNTIVV 259 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 259 (502)
.....+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556677888888888877765310 12 234566677777777777777777777665321 1 123455
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQS-----SNLKPDYISF 325 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 325 (502)
+.+..+|...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 66677777777777777766654321 1 12555566666666777777666666655 3222 24556
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCC---CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKI---KPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPSDPD-AIIWGSLLS 398 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 398 (502)
..+..++...|++++|...+++......- +.....+..+...|...|+ +.+|...+++....|+ ...+..++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66666677777777777777766553211 1112334444455555666 6666666666443222 234455666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 046039 399 ACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~ 418 (502)
.|...|++++|...|+++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=7.3e-11 Score=116.59 Aligned_cols=403 Identities=8% Similarity=-0.016 Sum_probs=277.2
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCC---chhHHHHHHHHHHhCC-CCchhH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGL---ARDGAQLHGRVVKQGL-EFDQFI 125 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 125 (502)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|++.+...+ +|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 57789999999999999999999999999985 55566678888888888888 9999999999988641 378889
Q ss_pred HHHHHHHHHhCCCh--------hHHHHHHhhcC----C-CC-CeeeHHHHHHHHH---------hcCCHHHHHHHHHccC
Q 046039 126 HNTIIYMYANCGFL--------SEARLMFDEVD----T-EF-DVVAWNSMIIGLA---------KCGEIDESRRLFDKMV 182 (502)
Q Consensus 126 ~~~l~~~~~~~g~~--------~~a~~~~~~~~----~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 182 (502)
|...+....+.++. +...++|+... . .+ +...|...+.... ..++++.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665554 23346666532 2 22 3457777776544 2345778899999886
Q ss_pred C-CCh---hhHH---HHHHHHH----------hCCChHHHHHHHHHHHHC--CC----C-----------C-----C---
Q 046039 183 S-RNT---VSWN---SMISGYV----------RNVKFKEALELFREMQEQ--NI----K-----------P-----S--- 220 (502)
Q Consensus 183 ~-~~~---~~~~---~l~~~~~----------~~~~~~~a~~~~~~m~~~--~~----~-----------~-----~--- 220 (502)
. |.. .+|. ..-.... ...+++.|...+.++... ++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 211 2222 2211110 011234444555443221 11 1 1 1
Q ss_pred HHHHHHHHHHHhccC-------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhcCCCC---Ccch
Q 046039 221 EFTMVSLLNACAKLG-------AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERAL-QVFNTVPKK---GLSC 289 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~ 289 (502)
...|...+.---..+ ..+.+..+|++++... +....++-..+..+...|+.++|. .+|+..... +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 123333333222221 1234567788888764 557888888888888899999996 999876642 3446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNL---------KPD------------YISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
|...+......|+++.|..+|+++..... .|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888899999999999999886410 132 235777777777889999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 046039 349 TETYKIKPSIKHYSCMVDALGRA-GLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--- 422 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--- 422 (502)
.+.. .......|...+..-.+. ++.+.|..+|+...+. | +...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8741 122334444433333344 4589999999988753 4 5667888888888999999999999999998773
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 423 ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
...++..+...-...|+.+.+.++.+++.+..++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4567888887777889999999999999876654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=9.1e-12 Score=107.35 Aligned_cols=206 Identities=8% Similarity=-0.008 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHH
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMV 294 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~ 294 (502)
+.|+..+......+...|++++|...|+..++...+++...+..+..++...|++++|+..|++..+.+ ...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678888889999999999999999999998754677777779999999999999999999876544 44788889
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC---hhHHHHH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDY-------ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS---IKHYSCM 364 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 364 (502)
..+...|++++|+..+++..+.... +. ..+..+...+...|++++|+..|+.+.+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 9999999999999999998885322 34 45777778888899999999999998753 443 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
..+|...|+. .++++.. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7877766543 2222211 12333443332 34456789999999999999999998888887654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=3.2e-12 Score=119.43 Aligned_cols=226 Identities=9% Similarity=-0.074 Sum_probs=172.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC-----cchH
Q 046039 226 SLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTIVVTAIIDMYCKCGCPERALQVFNTVPK-----KG-----LSCW 290 (502)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~ 290 (502)
.....+...|++++|...++++.+.... ....++..+..+|...|+++.|...+++..+ .+ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3455677899999999999999864211 1356788899999999999999988876543 11 2378
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhHHH
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKPSIKHYS 362 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 362 (502)
+.+...|...|++++|+..|++..+. +..+ ...++..+..++...|++++|...+++..... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999888763 1111 23567788889999999999999999987611 2223367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPS------DPD-AIIWGSLLSACRKHGN---IEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
.+..+|.+.|++++|...+++... .|. ...+..+...+...++ +.+|+..+++. ...|.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 899999999999999999987642 132 3356667777778888 77787777762 233445567889999
Q ss_pred HHHhcCCchHHHHHHHHhhh
Q 046039 433 LYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~ 452 (502)
+|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=116.88 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC------C
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQ------N-IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC------F 252 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 252 (502)
..++..+...+...|++++|...+++..+. + .+.....+..+...+...|++++|...++++.+.. .
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 446778888889999999999999888754 2 13345677888889999999999999998887641 1
Q ss_pred -CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046039 253 -ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLT 330 (502)
Q Consensus 253 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 330 (502)
+....++..+...+...|++++|..+|+++.+. ++.... +..| ...++..+..
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~~~-~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI------------------------YQTKLG-PDDPNVAKTKNNLAS 203 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHTSC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHHHhC-CCCHHHHHHHHHHHH
Confidence 122344555566666666666666555543211 000000 1111 1234555556
Q ss_pred HHhcCCCHHHHHHHHHHhhhhc------CCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETY------KIKPS-------IKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGS 395 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 395 (502)
++...|++++|...++++.... ...+. ...+..+...+...+.+.+|...++..... | ...++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 283 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKN 283 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 6666666666666666655320 01111 111222223334455555666666666543 3 4568889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
++.+|...|++++|.+.+++++++.|.
T Consensus 284 la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 284 LGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988765
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=3.1e-11 Score=99.98 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...++++.+. +...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455667788888999999999999988764 34578888899999999999999999998863 34678888889999
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
...|++++|.+.++.+... .+.+...+..++..+...|++++|...++++... .+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 3456778888999999999999999999887542 36778999999999999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 046039 411 QAAKQIIELDKNESCG 426 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~ 426 (502)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988887654
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=6.8e-11 Score=104.18 Aligned_cols=206 Identities=12% Similarity=-0.016 Sum_probs=122.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKK---G---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL-KPD-YISFI 326 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~-~~~~~ 326 (502)
+...+..+...+.+.|++++|...|+++.+. + ..++..+..+|...|++++|+..|++..+..+ .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444455555566666666666666655442 1 22455555556666666666666666555321 111 23444
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046039 327 AVLTACNH--------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLS 398 (502)
Q Consensus 327 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 398 (502)
.+..++.. .|++++|...|+.+...+ +.+......+.......++. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 44555555 556666666666555432 11111111111110000000 112467788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHhhhcCCccCCceeEEE
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAAS----------YQFEEAMEERLLMKEVKIEKEPGCSLIE 465 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 465 (502)
.|...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 99999999999999999999999854 5889999999977 889999999999986543
Q ss_pred ECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhc
Q 046039 466 VDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 466 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
.+|...+....+..+...+++.
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHh
Confidence 1344456677777777666553
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=3.5e-12 Score=101.74 Aligned_cols=119 Identities=11% Similarity=-0.041 Sum_probs=76.3
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 406 (502)
..+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|+++.. .| ++..|..++.+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 334455666677666666543 222 234445566777777777777777766643 23 566777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHhh
Q 046039 407 EMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE-RLLMK 451 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 451 (502)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777665554 35554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2.4e-11 Score=108.25 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=82.4
Q ss_pred hCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CC-CCchhHHHHHH
Q 046039 198 RNVKFKEALELFREMQE-------QNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN------CF-ELNTIVVTAII 263 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 263 (502)
..|++++|+..+++.++ ...+....++..+...+...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35566666666655543 222334566777778888888888888888877754 11 22345666777
Q ss_pred HHHHhcCChHHHHHHHhcCCCC--------C---cchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKK--------G---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS------NLKP-DYISF 325 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~ 325 (502)
..|...|++++|...|+++.+. + ..++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777776654321 1 123444444455555555555555444432 0011 12334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhh
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMT 349 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~ 349 (502)
..+..++...|++++|..+++++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=2.8e-11 Score=108.49 Aligned_cols=163 Identities=12% Similarity=-0.033 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcC-CCHHHHHHHHHHhhhhcCCCCC----h
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSS----NLKP-DYISFIAVLTACNHS-GKVNQAKDYFTLMTETYKIKPS----I 358 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~ 358 (502)
+|+.+..+|...|++++|+..+++..+. |-.+ -..++..+...|... |++++|+..|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455555555555666555555555432 1000 134667777788885 8999998888887753211111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---DA-----IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG--- 426 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--- 426 (502)
.++..+...|.+.|++++|...|+++... | .. ..|..++.++...|++++|+..|+++++++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 46778888899999999999998876531 2 21 257778888999999999999999999988876543
Q ss_pred --HHHHHHHHH--hcCCchHHHHHHHHhh
Q 046039 427 --YVLMSNLYA--ASYQFEEAMEERLLMK 451 (502)
Q Consensus 427 --~~~l~~~~~--~~g~~~~A~~~~~~~~ 451 (502)
+..++.++. ..+++++|+..++.+.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 444555554 3466777777765543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=4e-10 Score=98.90 Aligned_cols=157 Identities=8% Similarity=-0.044 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-----ChhHHHH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-----SIKHYSC 363 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 363 (502)
+..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHH
Confidence 334444555555555555555555443321 13344444555555555555555555555432 23 1223333
Q ss_pred HHHH--HHhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCcchHH
Q 046039 364 MVDA--LGRAG--LLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL----------DKNESCGYV 428 (502)
Q Consensus 364 l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~ 428 (502)
|+.+ ....| +..+|..+|+++... |+..+-..+..++...|++++|.+.++.+.+. +|+++.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 3333 11222 555555555555433 33222222333555555555555555544443 355555554
Q ss_pred HHHHHHHhcCCchHHHHHHHHhh
Q 046039 429 LMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++.+....|+ +|.++++++.
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHH
Confidence 54444444554 4555555554
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=2.4e-09 Score=99.69 Aligned_cols=231 Identities=12% Similarity=-0.006 Sum_probs=139.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc-----cHHHHHHHHHhcCCchhHHHHHHHHHHhCCC-Cc----hhHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL-----TYPSLFKAYAQLGLARDGAQLHGRVVKQGLE-FD----QFIH 126 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 126 (502)
.....+...|++++|...+++.... .+++.. .+..+...+...|+++.|...+++....... .+ ..++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344566788888898888888764 222221 3455556677788888888888887653211 11 1234
Q ss_pred HHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhhHHHHHHHHHhCCCh
Q 046039 127 NTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR----NTVSWNSMISGYVRNVKF 202 (502)
Q Consensus 127 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~ 202 (502)
..+...+...|++++|...+++.. .+......+ ....+..+...+...|++
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al-------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAF-------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 566677777788888777776533 222222221 123456677788888899
Q ss_pred HHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHH----HHHHHHHhcCCh
Q 046039 203 KEALELFREMQEQNIK----PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVT----AIIDMYCKCGCP 272 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~ 272 (502)
++|...+++....... .....+..+...+...|++++|...+++.......++ ..... ..+..+...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 9988888887654211 1235566777778888888888888888765422211 11111 223346677777
Q ss_pred HHHHHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHH
Q 046039 273 ERALQVFNTVPKKGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQ 314 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (502)
++|...++........ .+..+...+...|++++|...+++..
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766543211 23344455555555555555555543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=3.1e-10 Score=97.41 Aligned_cols=183 Identities=10% Similarity=-0.007 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC--C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKK--G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFIAV 328 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l 328 (502)
..+..+...+.+.|++++|+..|+++.+. + ...+..++.++...|++++|+..|+++.+..+.... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444556666667777777777665531 1 124555666666677777777777666654322111 133333
Q ss_pred HHHHhc------------------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 046039 329 LTACNH------------------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDA 390 (502)
Q Consensus 329 ~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 390 (502)
..++.. .|++++|...|+.+.+.+ +-+........... ...... .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----HHHHHH-----------H
Confidence 333332 334455555555544321 11111111111000 000000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.....++..|.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0123567788999999999999999999999986 57999999999999999999999999887654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=1.1e-10 Score=104.62 Aligned_cols=214 Identities=13% Similarity=-0.008 Sum_probs=126.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 193 ISGYVRNVKFKEALELFREMQEQ----NIKPS-EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
+..|...|++++|...|++..+. |-+++ ..+|..+..++...|++++|...+++.++.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 44555566666666666555432 11111 2344555555555555555555555444321 1
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhcCCCHHHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN-GYENEAIKLFSGLQSSNLKP-D----YISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a 341 (502)
..|+...+ ..++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111111 12456677777775 88888888777776531110 1 34577788888889999999
Q ss_pred HHHHHHhhhhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH------HHHHHHHHHHH--hcCCHH
Q 046039 342 KDYFTLMTETYKIKPSI-----KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDA------IIWGSLLSACR--KHGNIE 407 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~~l~~~~~--~~~~~~ 407 (502)
+..|++......-.+.. ..+..+..++...|++++|...|++... .|+. ..+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998887642211221 1466777888889999999999988765 2331 13444566664 456789
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 408 MAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+|+..|+++..++|....++..+-.
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHH
Confidence 9999998888888866554444433
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=7.8e-11 Score=103.80 Aligned_cols=205 Identities=9% Similarity=-0.053 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCC------cc
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN---TIVVTAIIDMYCKCGCPERALQVFNTVPKKG------LS 288 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~ 288 (502)
+.+...+..+...+...|++++|...|+.+++... .+ ...+..+..+|.+.|++++|...|+++.+.. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45677788888899999999999999999998752 23 6678889999999999999999999876532 23
Q ss_pred hHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 046039 289 CWNSMVFGLAM--------NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360 (502)
Q Consensus 289 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (502)
++..+..++.. .|++++|+..|+++.+..+. +.... .+...+...... ....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~--------------~a~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVD--------------DATQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHH--------------HHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHH--------------HHHHHHHHHHHH-----HHHH
Confidence 67778888888 99999999999999985322 11111 111111111111 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSLLSACRKH----------GNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+..+...|.+.|++++|+..|+++.. .|+ ...+..++.+|... |++++|+..|+++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45677888999999999999988754 243 45777888888866 8999999999999999999874
Q ss_pred ---hHHHHHHHHHhcCCchHH
Q 046039 426 ---GYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 426 ---~~~~l~~~~~~~g~~~~A 443 (502)
....+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 444555555555554443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=8.3e-12 Score=99.51 Aligned_cols=143 Identities=11% Similarity=-0.009 Sum_probs=114.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA 371 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (502)
|...+...|++++|+..++..... .| +...+..+...|...|++++|++.|++..+. .+-+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344555677888888888887653 23 2345667888899999999999999998874 244678889999999999
Q ss_pred CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 372 GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQA-AKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 372 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
|++++|...|+++.. .| ++..|..++..|.+.|++++|.+. ++++++++|+++.++...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988764 35 677899999999999999876665 699999999999999999999888875
No 93
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=1.7e-10 Score=115.37 Aligned_cols=162 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
..+|+.|..++.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|...|+++++.. +-+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566777777777777777777777776654 4456667777777777777777777777777664 3346667777777
Q ss_pred HHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
|...|++++|++.|++..+ .+..+|..+..+|...|++++|+..|++..+... -+...+..+..++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777776544 2344677777777777777777777777776432 24566777777777777777777
Q ss_pred HHHHHhhh
Q 046039 343 DYFTLMTE 350 (502)
Q Consensus 343 ~~~~~~~~ 350 (502)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=7.3e-10 Score=98.53 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-------
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQ------NI-KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC------- 251 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 251 (502)
..++..+...+...|++++|+..++++.+. +- +....++..+..++...|++++|...++++.+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 457888899999999999999999988754 21 3345678888999999999999999999888651
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------C---cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK--------G---LSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
.+....++..+...|...|++++|...++++.+. + ..++..+...+...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334677888999999999999999999876543 2 33788899999999999999999998876
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=1.8e-09 Score=94.82 Aligned_cols=181 Identities=10% Similarity=0.049 Sum_probs=128.5
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG-----LSCWNSMVFGLAMNGYENEAIKLFSGLQ 314 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (502)
+...+++..+.+ .++...+..+..++...|++++|++++.+....+ ...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 3444445567777777888888888887764332 3466777888888999999999999988
Q ss_pred HCCCCC-----CHHHHHHHHHH--Hhc--CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 315 SSNLKP-----DYISFIAVLTA--CNH--SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 315 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
+. .| +..+...++.+ ... .+++..|..+|+++... .|+......++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 55 35666666655 222 34899999999998754 3442233344458889999999999998654
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 386 S-----------DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 386 ~-----------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
. .| ++.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 3 14 56677677777777787 899999999999999986544
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=2.7e-10 Score=88.69 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 402 (502)
+..+...+...|++++|..+++.+... .+.+...+..++..+...|++++|...++++.. ..+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555566666666666665543 123445555566666666677776666665542 2345567777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.|++++|.+.++++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888776543
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=5e-10 Score=99.95 Aligned_cols=174 Identities=9% Similarity=-0.040 Sum_probs=139.1
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 274 RALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 274 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
.....+......+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 344444444444455677788888899999999999999988643 36678888999999999999999999998754
Q ss_pred CCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHH
Q 046039 354 IKPSIKHYS-CMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE--SCGYV 428 (502)
Q Consensus 354 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~ 428 (502)
.|+..... .....+.+.++.++|...+++... .| +...+..++..+...|++++|+..|+++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 34543322 233346677888888888887754 34 67899999999999999999999999999999998 88999
Q ss_pred HHHHHHHhcCCchHHHHHHHHhh
Q 046039 429 LMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999887754
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=5e-08 Score=93.59 Aligned_cols=203 Identities=12% Similarity=-0.019 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhc
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERAL-QVFNT 281 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 281 (502)
+.+..+|++++... +.+...|...+.-+...|+++.|..++++.... +.+...+. .|....+.++.. .+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 45677888888763 666777887888788889999999999999887 33433332 222222211111 12211
Q ss_pred CC--C-------C---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHh
Q 046039 282 VP--K-------K---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQAKDYFTLM 348 (502)
Q Consensus 282 ~~--~-------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 348 (502)
.. . . ....|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 0 0 1135677777777788899999999999 32 22345555433322222 33699999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 349 TETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.+.+ +.++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+
T Consensus 347 l~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8854 3344556667777788999999999999985 3577888888888889999999999999885
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=8.4e-11 Score=118.17 Aligned_cols=169 Identities=13% Similarity=0.014 Sum_probs=116.6
Q ss_pred HhcCChHHHHHHHhcCC--------C---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 267 CKCGCPERALQVFNTVP--------K---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|+++.+.+. .+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 56677777777777665 2 2344677777777777777777777777776532 2556677777777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|++++|+..|++..+. .+.+...+..+..+|.+.|++++ ...|+++.. .| +...|..++.++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7888888777777753 23345666777777777777777 777776653 23 5567777777777788888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
+++++++|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88777777777777777777766554
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=4.3e-09 Score=89.14 Aligned_cols=161 Identities=11% Similarity=-0.073 Sum_probs=128.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHhhhhcCCCCChhHH
Q 046039 286 GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG----KVNQAKDYFTLMTETYKIKPSIKHY 361 (502)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (502)
++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|+..... -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44566666777777778888888888887765 55667777777777 6 899999999988664 256677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 362 SCMVDALGR----AGLLEEAEKLIRSMPSDPD----AIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 362 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
..|...|.. .+++++|..+|++.....+ +..+..|...|.. .+++++|+..|+++.+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 778888876 7899999999998876543 7888899999988 88999999999999988 677778999
Q ss_pred HHHHHHhc-C-----CchHHHHHHHHhhhcCC
Q 046039 430 MSNLYAAS-Y-----QFEEAMEERLLMKEVKI 455 (502)
Q Consensus 430 l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 455 (502)
|+.+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99988764 3 89999999999887765
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.15 E-value=3.9e-10 Score=86.62 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
..+...+..|.+.|++++|+..|++... .| +...|..++.+|...|++++|+..|+++++++|+++..+..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3455556666666666666666666543 23 455666666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHhhh
Q 046039 437 SYQFEEAMEERLLMKE 452 (502)
Q Consensus 437 ~g~~~~A~~~~~~~~~ 452 (502)
.|++++|++.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666653
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.6e-09 Score=84.21 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677888888899999999999888754 236677888888888999999999999998874 244567788888999
Q ss_pred HhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 369 GRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
...|++++|...++++.. . .+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999988754 2 357788899999999999999999999999988863
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=7.6e-10 Score=90.85 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-H
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA-L 368 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 368 (502)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3444555666666666666666665532 124566667777777777777777777777653 2233322222211 1
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHH
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE--SCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 444 (502)
...+...+|...+++... .| +...+..++.++...|++++|...|+++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222233346666766543 35 57889999999999999999999999999999875 558999999999999999999
Q ss_pred HHHHHhhh
Q 046039 445 EERLLMKE 452 (502)
Q Consensus 445 ~~~~~~~~ 452 (502)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=3.1e-10 Score=89.86 Aligned_cols=102 Identities=16% Similarity=0.018 Sum_probs=90.5
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 354 IKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 354 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
+.|+ ...+..+...+.+.|++++|...|+++.. .| ++..|..++.+|...|++++|+..|+++++++|+++..+..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 56777888889999999999999998864 35 688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 431 SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+.+|...|++++|+..|+++.+...
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987653
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=8.7e-10 Score=108.88 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=124.7
Q ss_pred cCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 269 CGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
.|++++|...|++..+. +...|..+...+...|++++|...+++..+... .+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988764 345888999999999999999999999998643 36788889999999999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH---GNIEMAKQAAKQIIELD 420 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 420 (502)
++..+. .+.+...+..+..+|.+.|++++|.+.|+++.. .| +...+..++.++... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 244578888999999999999999999988764 34 577889999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 046039 421 KNESCGYVLMS 431 (502)
Q Consensus 421 p~~~~~~~~l~ 431 (502)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99998887776
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=1.3e-09 Score=92.18 Aligned_cols=183 Identities=9% Similarity=-0.061 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNG 301 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (502)
..+......+...|++++|...|+++++..+ .+...+.. ........ ........+..+|...|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~-----~~~~~~~~----------~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYW-----TNVDKNSE----------ISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHH-----HHSCTTSH----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHH-----hhhcchhh----------hhHHHHHHHHHHHHHCC
Confidence 3344455566778888888888888877531 12222211 01111000 01223445888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC--HHHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL--LEEAEK 379 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~ 379 (502)
++++|+..|++..+..+ -+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ .+.+..
T Consensus 69 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999988643 36788889999999999999999999999874 24457788888888766654 455667
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 380 LIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 380 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.++.+... |....+...+.++...|++++|+..|++++++.|++
T Consensus 146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 77776532 233355667778888999999999999999999974
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.09 E-value=1.6e-09 Score=97.69 Aligned_cols=219 Identities=11% Similarity=-0.005 Sum_probs=142.0
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK-LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQ 277 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (502)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777776665431 110 111 35556555555443 334555666666666
Q ss_pred HHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhcCCCHHHHHH
Q 046039 278 VFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN---LKPD--YISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 278 ~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
.|.+..+. + ..+|+.+...|...|++++|+..|++..+.. -.|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66544321 1 2256667777778888888888877765421 1121 3567778888888 99999999
Q ss_pred HHHHhhhhcCCC---C-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 046039 344 YFTLMTETYKIK---P-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS----DPD----AIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 344 ~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
.|++......-. + ...++..+...|.+.|++++|+..|++... .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999877532111 1 145778889999999999999999988754 122 2366777788888999999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHHH
Q 046039 412 AAKQIIELDKNESCG-----YVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 446 (502)
.|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88876532 44455544 56776666553
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=2.2e-09 Score=95.72 Aligned_cols=156 Identities=9% Similarity=-0.041 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHH-HH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIWG-SL 396 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~-~l 396 (502)
+.+...+..+...+...|++++|...|+++.+. .+.+...+..+..++.+.|++++|...++++... |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 334566777888889999999999999999874 3446778889999999999999999999999763 7655333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAG 476 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (502)
...+...++.+.|+..++++++.+|+++..+..++.+|...|++++|+..++++.+..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~------------------- 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA------------------- 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------------
Confidence 3446778888999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhc
Q 046039 477 GRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 477 ~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
++......+..++..+++.
T Consensus 253 -----~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 253 -----ADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp -----GGGHHHHHHHHHHHHHCTT
T ss_pred -----ccchHHHHHHHHHHHcCCC
Confidence 2266777788887777654
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=6.3e-10 Score=88.21 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=82.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+.+.|++++|...|+++.. .| +...|..++.+|...|++++|+..|+++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455667778888889999999998887753 34 6778888899999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhhhcC
Q 046039 435 AASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~ 454 (502)
...|++++|+..+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999988887654
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=1.2e-07 Score=84.18 Aligned_cols=228 Identities=7% Similarity=0.002 Sum_probs=160.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---C
Q 046039 200 VKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG--AIRQGEWIHNFLVTNCFELNTIVVTAIIDMY----CKC---G 270 (502)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 270 (502)
...++|+..++.++..+ +-+...++.-..++...| ++++++..++.++... +-+..+++.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33467888888888765 555666676666777777 8888888888888765 33444444433333 344 6
Q ss_pred ChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC------HH
Q 046039 271 CPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYEN--EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK------VN 339 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~ 339 (502)
++++++.+++++.+.+ ..+|+.-.-.+...|.++ ++++.++++.+.++. |...|..-.......+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 7788888888776543 446666666777777777 888888888887544 66777766666666665 78
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE-AEKLIRSMPS-----DPDAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
++++.++.+... .+-|...|+.+...+.+.|+..+ +..+..++.. ..+...+..++..|.+.|+.++|++++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 888888888763 34567777777777777777444 4456666543 236778888888888888999999999
Q ss_pred HHHHh-cCCCCcchHHHHHH
Q 046039 414 KQIIE-LDKNESCGYVLMSN 432 (502)
Q Consensus 414 ~~~~~-~~p~~~~~~~~l~~ 432 (502)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99886 78888777776654
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=2.4e-09 Score=82.12 Aligned_cols=110 Identities=10% Similarity=-0.067 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~ 400 (502)
..+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++... . .+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45667788888999999999999998864 345678888899999999999999999988764 3 4678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
...|++++|++.|+++++++|+++.++..|+.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999998888653
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=5.1e-09 Score=89.73 Aligned_cols=185 Identities=15% Similarity=-0.016 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---c---hHH
Q 046039 220 SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL--NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---S---CWN 291 (502)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~ 291 (502)
+...+..+...+...|++++|...|+.+.+..... ....+..++.+|.+.|++++|+..|+++.+.++ . ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667788899999999999999999865322 245778889999999999999999998765322 1 455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 046039 292 SMVFGLAM------------------NGYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETY 352 (502)
Q Consensus 292 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (502)
.+..++.. .|++++|+..|+++.+.. |+. ........ ...+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHH----
Confidence 56666554 578999999999999863 332 22211110 00111111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
......+...|.+.|++++|...|+++... |+ ...+..++.++.+.|++++|.+.++++....|++..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 111234677889999999999999987653 43 246888999999999999999999999998888764
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=7.5e-09 Score=87.79 Aligned_cols=129 Identities=12% Similarity=-0.036 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++..... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34556677778888888888887763 457777888888888888888888888887764 244566777788888
Q ss_pred HhcCCHHHHHHHHHhCCCC-C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 369 GRAGLLEEAEKLIRSMPSD-P-----------------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
...|++++|...|+++... | ....+..++.++...|++++|.+.|+++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888766431 1 22567778888888888888888888888888876
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=6.8e-08 Score=86.41 Aligned_cols=160 Identities=9% Similarity=-0.046 Sum_probs=122.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNL-KPDYI----SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSC 363 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 363 (502)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|+..++.+.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999988877432 22221 2334666677888999999999998863222222 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-------C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-------D-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYV 428 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-------~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 428 (502)
++.+|...|++++|...|+++.. . + ...++..++..|...|++++|+..+++++++.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999888752 2 2 23478899999999999999999999999855332 56899
Q ss_pred HHHHHHHhcCC-chHHHHHHHHhhh
Q 046039 429 LMSNLYAASYQ-FEEAMEERLLMKE 452 (502)
Q Consensus 429 ~l~~~~~~~g~-~~~A~~~~~~~~~ 452 (502)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999998888753
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=1.6e-09 Score=97.86 Aligned_cols=196 Identities=8% Similarity=-0.059 Sum_probs=150.4
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK-CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
..|++++|.+++++..+.... . +.+ .++++.|...|.. .+..|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 457888999999888765321 1 112 5788888888776 3677889999999999998
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 312 GLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKP-SIKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 312 ~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
+..+. +-.+ -..+|..+..+|...|++++|+..|++..... +.+. ...++..+..+|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 1111 13578888889999999999999999876532 1111 24577788889988 99999999998
Q ss_pred hCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHH
Q 046039 383 SMPSD----P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES------CGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 383 ~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
+...- . ...++..++..|...|++++|+..|++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87531 1 145788899999999999999999999999766543 367778888889999999999999
Q ss_pred Hhh
Q 046039 449 LMK 451 (502)
Q Consensus 449 ~~~ 451 (502)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=5.8e-09 Score=102.94 Aligned_cols=147 Identities=9% Similarity=-0.081 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+. +...|..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666655543 234455555666666666666666666655442 23355556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhCC
Q 046039 312 GLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA---GLLEEAEKLIRSMP 385 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 385 (502)
+..+... .+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++..
T Consensus 82 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 6655421 23455555666666666666666666665543 123345555556666666 66666666665543
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=7.8e-09 Score=84.72 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH-HHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSA-CRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~-~~~ 402 (502)
+......+...|++++|...++...+. .+.+...+..+..++.+.|++++|...|+++... |++..+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 445666788899999999999998863 2446788889999999999999999999998753 544443333222 223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.++..+|+..++++++.+|+++..+..++.++...|++++|...++++.+..+
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 23344589999999999999999999999999999999999999999886543
No 118
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1e-08 Score=102.96 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=131.3
Q ss_pred hccCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhc
Q 046039 232 AKLGAIRQGEWIHNFLV--------TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMN 300 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 300 (502)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|+..|+++.+. +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66778888888888777 332 345667777778888888888888888776652 445777788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
|++++|+..|++..+.... +...+..+..++...|++++ ++.|+++.+. .+.+...+..+..+|.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888875422 45677778888888888888 8888888763 234567778888888888888888888
Q ss_pred HHhCCC-CCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcch
Q 046039 381 IRSMPS-DPD-AIIWGSLLSACRKHGN-----IEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 381 ~~~~~~-~~~-~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~p~~~~~ 426 (502)
|+++.. .|+ ...+..++.++...++ .+...+..+.+.++.++++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 888875 354 4577777777766555 233333333333444444443
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=1e-08 Score=86.64 Aligned_cols=127 Identities=9% Similarity=0.048 Sum_probs=55.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK- 337 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 337 (502)
+..+|.+.|++++|+..|++..+. ++..|..+...+...|++++|+..|++..+..+ .+...+..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHH
Confidence 444445555555555555444321 233445555555555555555555555555321 134444444444433322
Q ss_pred -HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHH
Q 046039 338 -VNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAII 392 (502)
Q Consensus 338 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 392 (502)
...+...++... ...|....+.....++...|++++|...|+++.. .|+...
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 222333333322 1112222223334444455566666666655543 255443
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.5e-08 Score=90.71 Aligned_cols=163 Identities=9% Similarity=-0.093 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC--CCC--hhH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY-----ISFIAVLTACNHSGKVNQAKDYFTLMTETYKI--KPS--IKH 360 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~ 360 (502)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++.......- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677888888888888777765322111 22344556677888999999999887653111 111 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Ccc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS----DPD-----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN------ESC 425 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 425 (502)
++.+...|...|++++|...|+++.. .|+ ..++..++.+|...|++++|+..+++++++.++ ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88899999999999999999887652 122 258889999999999999999999999875432 156
Q ss_pred hHHHHHHHHHhcCCchHH-HHHHHHhhh
Q 046039 426 GYVLMSNLYAASYQFEEA-MEERLLMKE 452 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 452 (502)
++..++.+|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999999999999999 777777653
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.3e-09 Score=81.54 Aligned_cols=119 Identities=18% Similarity=0.049 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...+..+...+.+.|++++|...|++... .| +...|..++.++...|++++|+..++++++++|+++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566777888888999999988887754 24 67788899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHH
Q 046039 436 ASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLL 496 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 496 (502)
..|++++|...+++..+..+.. ...|++.++...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999998887654211 2346677777777766554
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=4e-09 Score=82.98 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+.+.|++++|...|+++.. .| +...|..++.++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345566677888899999999999988754 34 6778889999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhhhcC
Q 046039 435 AASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~ 454 (502)
...|++++|.+.++++.+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.95 E-value=1.2e-08 Score=82.61 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 400 (502)
..+..+...+...|+++.|...++..... .+.+...+..+..++...|++++|...+++... .| +...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666677777888888888888888763 234577788888888899999999998887654 23 677889999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHHhhh
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL--YAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 452 (502)
...|++++|...++++++..|+++..+..+..+ +...|++++|++.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555554 8888999999999887653
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=1e-07 Score=84.56 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=168.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCCCC---cchHHHHHHHH----Hhc---CCh
Q 046039 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG--CPERALQVFNTVPKKG---LSCWNSMVFGL----AMN---GYE 303 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~---~~~~~~l~~~~----~~~---g~~ 303 (502)
..++|......++..+ +-...+++.-..++...| ++++++.+++.+...+ ..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4468889999998876 335666777777778888 9999999999887644 44676655555 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH--HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC------HH
Q 046039 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN--QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL------LE 375 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 375 (502)
++++.+++++.+...+ +...|..-.-++...|.++ +++++++.+.+. -+-|...|+.-..++.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 9999999999987544 7788877777777788887 999999999875 24456677666666666676 88
Q ss_pred HHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 376 EAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEM-AKQAAKQIIELD---KNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 376 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
++++.++++.. .| |...|+.+...+.+.|+... +..+++++++++ |.++.++..++.+|.+.|+.++|+++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 89988877654 34 78899999999988887444 667888887776 88899999999999999999999999999
Q ss_pred hhh
Q 046039 450 MKE 452 (502)
Q Consensus 450 ~~~ 452 (502)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 975
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=1.6e-08 Score=78.33 Aligned_cols=117 Identities=14% Similarity=0.010 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~ 398 (502)
+...+..+...+...|++++|...++..... .+.+...+..+..+|...|++++|...++++.. . .+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4456666777777777777777777777652 233566677777777777888888877776653 2 35677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
++...|++++|.+.|+++++.+|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88889999999999999998888888888888888877664
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=4.3e-08 Score=82.96 Aligned_cols=172 Identities=9% Similarity=-0.034 Sum_probs=100.5
Q ss_pred HHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhHHHHHH
Q 046039 71 AILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG----FLSEARLMF 146 (502)
Q Consensus 71 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 146 (502)
|++.|++..+. -+...+..+...+...+++++|...|+...+.| ++..+..+...|.. + ++++|...|
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44555555443 244455555555556666666666666666554 44555555555555 4 566666666
Q ss_pred hhcCCCCCeeeHHHHHHHHHh----cCCHHHHHHHHHccCCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 046039 147 DEVDTEFDVVAWNSMIIGLAK----CGEIDESRRLFDKMVSRN-----TVSWNSMISGYVR----NVKFKEALELFREMQ 213 (502)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 213 (502)
++.....++..+..|...|.. .+++++|+..|++..+.+ +.++..|...|.. .+++++|+.+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 655444455555555555554 556666666666664432 4566667777766 667777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHhcc-C-----chHHHHHHHHHHHHcCC
Q 046039 214 EQNIKPSEFTMVSLLNACAKL-G-----AIRQGEWIHNFLVTNCF 252 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 252 (502)
+. +.+...+..+...|... | ++++|...|+...+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 65 22333455555555432 2 67777777777777663
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=2e-08 Score=77.38 Aligned_cols=119 Identities=12% Similarity=-0.003 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 398 (502)
+...+..+...+...|+++.|...++..... .+.+...+..+..++...|++++|...+++... .| +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3456667777788888888888888888764 234567778888888899999999998887654 23 5778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 441 (502)
++...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999888763
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.2e-08 Score=86.70 Aligned_cols=192 Identities=9% Similarity=-0.063 Sum_probs=99.3
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHH-------HHHHHhcCChHHHHHHHhcCCCCCc------------------
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAI-------IDMYCKCGCPERALQVFNTVPKKGL------------------ 287 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 287 (502)
..++...|.+.|.++.+.. +-....+..+ ...+.+.++..+++..+.......+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777765 3344555544 3444444444444444444333110
Q ss_pred ------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hh
Q 046039 288 ------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IK 359 (502)
Q Consensus 288 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 359 (502)
..+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 022334455556666666666666655432 33323334444555566666666666544321 0 110 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD---P--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
.+..+..++.+.|++++|+..|++.... | ....+...+.++.+.|+.++|...|+++.+.+|+ +.....|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4445555666666666666666655322 2 1224455555666666666666666666666665 4444433
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=4.1e-08 Score=85.04 Aligned_cols=187 Identities=11% Similarity=-0.013 Sum_probs=108.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHhccCchHHHHHHHHHHHHcCCCCc---------------
Q 046039 198 RNVKFKEALELFREMQEQNIKPSEFTMVSL-------LNACAKLGAIRQGEWIHNFLVTNCFELN--------------- 255 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 255 (502)
..++...|.+.|.++.... +-....|..+ ...+...++..++...+....+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 4677777777777777664 4455555555 34444444444444444443331 111
Q ss_pred -------hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHH
Q 046039 256 -------TIVVTAIIDMYCKCGCPERALQVFNTVPKKGL--SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YIS 324 (502)
Q Consensus 256 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~ 324 (502)
....-.+...+...|++++|.++|..+...++ .....+...+.+.+++++|+..|+...... .|. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 11223355566677777777777777765332 244555556777777777777776554421 111 235
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD 389 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 389 (502)
+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++.. .|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 566666777777777777777777642 22132 33445566667777777777777777653 355
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.90 E-value=2.7e-08 Score=75.85 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 399 (502)
...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|...++++.. ..+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456777777788888888888888888764 234566777888888888999999888887653 2367788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988888876654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=5.8e-09 Score=85.61 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH-HHhcCCH--HHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSA-CRKHGNI--EMA 409 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~--~~A 409 (502)
.|++++|...++..... .+.+...+..+..+|...|++++|...|+++... .+...+..++.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34555555555554442 1233445555555555555555555555554321 244455555555 4555555 666
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666555543
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=1.9e-08 Score=77.78 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 355 KPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+.+...+..+...+.+.|++++|...|+++... | +...+..++.++...|++++|+..++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987643 4 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHhhhc
Q 046039 433 LYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~~ 453 (502)
++.+.|++++|...+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998754
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=3.2e-09 Score=94.29 Aligned_cols=187 Identities=6% Similarity=-0.106 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
..+...+...|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3333444444444444444443322 123344445555555555555555555555542 224556666666677777
Q ss_pred CHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
++++|...|+...+.. |+ ...+...+....+..+...... .......++......+... ..|++++|++.+++
T Consensus 87 ~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEECQR 160 (281)
T ss_dssp CHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSG
T ss_pred CHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 7777777776665431 11 0011111111111111111111 1222222333333333332 26899999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHhhhc
Q 046039 416 IIELDKNESCGYVLMSNLYAAS-YQFEEAMEERLLMKEV 453 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 453 (502)
+++.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999888888887777776 7789999999988653
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=7.5e-08 Score=81.52 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=44.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
.+...+...|++++|...|++...++...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344444555555555555555544444455555555555555555555555554432 1234444455555555555555
Q ss_pred HHHHHHHhhh
Q 046039 341 AKDYFTLMTE 350 (502)
Q Consensus 341 a~~~~~~~~~ 350 (502)
|...|+...+
T Consensus 90 A~~~~~~al~ 99 (213)
T 1hh8_A 90 AIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.84 E-value=1.9e-08 Score=81.30 Aligned_cols=109 Identities=18% Similarity=0.091 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 398 (502)
+...+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..|+++.. .| +...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556777777888888888888888888764 234567777888888888888888888877654 23 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+|...|++++|+..|+++++++|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888888888887655554
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.84 E-value=2.1e-08 Score=74.88 Aligned_cols=100 Identities=13% Similarity=-0.035 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--ESCGYVLMSN 432 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 432 (502)
+...+..+...+...|++++|...|+++.. ..+...|..++.++...|++++|...++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455667788888899999999999887753 236778889999999999999999999999999999 9999999999
Q ss_pred HHHhc-CCchHHHHHHHHhhhcCCc
Q 046039 433 LYAAS-YQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 433 ~~~~~-g~~~~A~~~~~~~~~~~~~ 456 (502)
++... |++++|.+.++.+......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999877654
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=2.4e-07 Score=88.84 Aligned_cols=357 Identities=11% Similarity=-0.001 Sum_probs=199.9
Q ss_pred cCC-ChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC-hhH
Q 046039 64 QSS-TPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF-LSE 141 (502)
Q Consensus 64 ~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 141 (502)
+.| ++..|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377777787777754 233 8999999999999884 4688899888887777663 344
Q ss_pred HHHHHhhcCC-----CCCeeeHHHHHHHHH----hcCCHHHHHHHHHccCCCChhhHHHHHHHHHh---C----------
Q 046039 142 ARLMFDEVDT-----EFDVVAWNSMIIGLA----KCGEIDESRRLFDKMVSRNTVSWNSMISGYVR---N---------- 199 (502)
Q Consensus 142 a~~~~~~~~~-----~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~---------- 199 (502)
...+|+.... ..+...|...+..+. ..++.+.+.++|++.+.-....+..+-..|.. .
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 5556655332 345567777776544 34677888899988855211112222222211 1
Q ss_pred ----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--C--c---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 200 ----VKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL--G--A---IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 200 ----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
+.+..|...++.+...--..+...|...+.--... | + .+.+..+|++++... +.++.++...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 12223344444433210011233444433332221 1 1 244567788877754 4557777777777788
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHhcCC
Q 046039 269 CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN---------LKP---DYISFIAVLTACNHSG 336 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~p---~~~~~~~l~~~~~~~~ 336 (502)
.|+.+.|..+|++.... +.....- -.|....+.++. ++.+.+.- ..+ ....|...+....+.+
T Consensus 226 ~~~~~~ar~i~erAi~~-P~~~~l~-~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM-SDGMFLS-LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-CCSSHHH-HHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC-CCcHHHH-HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 88888888888765544 3321111 122222222222 22222110 001 1234555555555667
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR-AGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
+.+.|..+|+.+ .. . +.+...|...+..-.. .++.+.|..+|+..... | ++..|...+......|+.+.|..+|
T Consensus 301 ~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788888888887 32 1 2233444332322222 33688888888776532 3 3445666777777888888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+++ +....++......-...|+.+.+.+++++..+
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887 33456677776656667888888887776653
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.84 E-value=2e-08 Score=91.57 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...|..+..+|.+.|++++|+..|+++.. .| +...|..++.+|...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46778888999999999999999988764 24 67889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHH-HHHHHhh
Q 046039 436 ASYQFEEAM-EERLLMK 451 (502)
Q Consensus 436 ~~g~~~~A~-~~~~~~~ 451 (502)
+.|++++|. ..++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999994 4555554
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=3.4e-08 Score=75.99 Aligned_cols=118 Identities=18% Similarity=0.100 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+...|++++|...|+++.. . .+...+..++.++...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 456777888999999999999999998754 2 36788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhc
Q 046039 435 AASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
...|++++|...+++..+. .|++......++.++..+++.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999998754 345567777888887777654
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.82 E-value=1.3e-08 Score=77.28 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
.+..+...+.+.|++++|...|+++.. .| +...|..++.++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345677888899999999999998864 35 7789999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhhcCC
Q 046039 438 YQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 438 g~~~~A~~~~~~~~~~~~ 455 (502)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999886543
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=1e-08 Score=81.14 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 398 (502)
+...+..+...+...|++++|+..|+.+... .+.+...+..+..+|...|++++|...|+++.. .| ++..+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3456677778888999999999999998864 345677888899999999999999999988764 34 5678899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+|...|++++|+..|++++++.|+++.......
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 999999999999999999999999887654443
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=6.7e-08 Score=73.62 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...+..+...+...|++++|...++++.. . .+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56778888999999999999999988764 2 467789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhc
Q 046039 436 ASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~ 453 (502)
..|++++|..+++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=5.7e-06 Score=74.19 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=155.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-Ch
Q 046039 196 YVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC-G-CP 272 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 272 (502)
..+.+..++|+++++.++..+ +-+...++.--.++...| .++++..+++.++... +-+..+++.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344455677888888888765 555666666666666667 5888888888888765 34566666666566665 6 78
Q ss_pred HHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC----
Q 046039 273 ERALQVFNTVPKKGLS---CWNSMVFGLAMNGYEN--------EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK---- 337 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 337 (502)
++++++++++.+.++. +|+...-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888888776544 5555555555555555 888888988887544 77778777777777765
Q ss_pred ---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCCC-------
Q 046039 338 ---VNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL--------------------EEAEKLIRSMPSD------- 387 (502)
Q Consensus 338 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~------- 387 (502)
++++++.++.+... .+-|...|+.+-..+.+.|+. .+.......+...
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 67888888887763 344566777666666666553 3344444444321
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHH
Q 046039 388 -PDAIIWGSLLSACRKHGNIEMAKQAAKQII-ELDKNESCGYVLMSN 432 (502)
Q Consensus 388 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 432 (502)
++...+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 466677888888888888888888888886 567776666655543
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=1.1e-07 Score=71.55 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
.+..++..+...|++++|...|++... .| +...+..++.++...|++++|...++++++..|+++..+..++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344444455555555555555554432 12 3445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHhh
Q 046039 438 YQFEEAMEERLLMK 451 (502)
Q Consensus 438 g~~~~A~~~~~~~~ 451 (502)
|++++|.+.+++..
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555554
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=1.8e-08 Score=79.58 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 399 (502)
...+..+...+...|++++|+..|+.+... -+.+...|..+..+|...|++++|...|+++.. .| ++..|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 356777778888999999999999998874 344678888899999999999999999988764 34 56788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
|...|++++|+..|++++++.|+++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999865
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=2.5e-08 Score=76.59 Aligned_cols=94 Identities=10% Similarity=0.043 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC-------GYVL 429 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~ 429 (502)
..+..++..+.+.|++++|+..|+++.. .| +...|..++.+|...|++++|++.++++++++|+++. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556677888888888888888877654 34 5677888888888888888888888888888776643 5677
Q ss_pred HHHHHHhcCCchHHHHHHHHhhh
Q 046039 430 MSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++.++...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888888888888887764
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=3.3e-07 Score=81.94 Aligned_cols=162 Identities=14% Similarity=-0.028 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCC---c------chHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKKG---L------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNL---KPD--Y 322 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~--~ 322 (502)
..+...+..+...|++++|...+.+..+.. . ..+..+...+...|++++|+..+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344456667778888888888876543211 1 1334456667788899999999988875321 122 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhh---hcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------C-C
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTE---TYKIKP--SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-------P-D 389 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~-~ 389 (502)
.++..+...|...|++++|...+++... ..+..+ ...++..++.+|...|++++|...+++...- . -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788888899999999999999998873 212111 1257888999999999999999999876431 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 046039 390 AIIWGSLLSACRKHGNIEMA-KQAAKQIIE 418 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 418 (502)
..+|..++.+|...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56888999999999999999 888999876
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.78 E-value=5.9e-08 Score=75.58 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=82.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+...+..+...+...|++++|...|++... .| +...|..++.++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566777788888888888888888877653 23 567888888899999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHhhhcC
Q 046039 434 YAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 434 ~~~~g~~~~A~~~~~~~~~~~ 454 (502)
|...|++++|+..++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999888887654
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.76 E-value=5.6e-08 Score=78.33 Aligned_cols=64 Identities=11% Similarity=0.242 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...|..++.+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567778888888888888888888888888888888888888888888888888888877643
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.3e-07 Score=74.61 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
..+..+...+...|++++|...|++... .|+ ...|..++.++...|++++|+..++++++..|+++..+..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 3444444444455555555555444432 233 33444555555555555555555555555555555555555555
Q ss_pred HHhcCCchHHHHHHHHhh
Q 046039 434 YAASYQFEEAMEERLLMK 451 (502)
Q Consensus 434 ~~~~g~~~~A~~~~~~~~ 451 (502)
|...|++++|...+++..
T Consensus 109 ~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555544
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=6.9e-08 Score=80.73 Aligned_cols=95 Identities=12% Similarity=-0.115 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
..+..+..+|.+.|++++|...++++.. . .+...+..++.+|...|++++|+..|+++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888899999999998887754 2 4677899999999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHhhhc
Q 046039 437 SYQFEEAM-EERLLMKEV 453 (502)
Q Consensus 437 ~g~~~~A~-~~~~~~~~~ 453 (502)
.++.+++. ..++.+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888877 455555443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.6e-07 Score=70.68 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 399 (502)
...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++... .| +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 455666777788888888888888888764 234677778888888899999999998887754 24 57788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...|++++|.+.++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998888887654
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=2.7e-07 Score=82.46 Aligned_cols=212 Identities=11% Similarity=0.016 Sum_probs=136.7
Q ss_pred HHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcch---HHHHHHHHhcCCChHHHHHHHHHhHhcCC
Q 046039 7 IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFI---WNTIIRGFSQSSTPRNAILLFIDMLVTSP 83 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 83 (502)
.+..+.+-...|+..+...+...+ .-. + ..+|..-...+... +...+..+...|++++|...+++..+...
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l-~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKL-QIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHH-TCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-CcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 345555555678888888888877 221 1 12333322222332 33346778889999999999999886522
Q ss_pred CCCCcc----cHHHHHHHHHhcCCchhHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhCCChhHHHHHHhhcCCCCC
Q 046039 84 IQPQRL----TYPSLFKAYAQLGLARDGAQLHGRVVKQGLE-FD----QFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 84 ~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
..|+.. .+..+...+...++++.|+..++.+.+.... ++ ..+++.+..+|...|++++|...|++..
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al---- 182 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL---- 182 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Confidence 223321 2234555666778899999999998884332 22 2367888888888999988888887643
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 046039 155 VVAWNSMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQ----NIKPS-EFTMVS 226 (502)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ 226 (502)
+.++..... ...+|..+..+|.+.|++++|+..+++..+. +..+. ..+|..
T Consensus 183 ---------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 183 ---------------------KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp ---------------------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred ---------------------HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 222322111 1236677788888888888888888876542 22222 567777
Q ss_pred HHHHHhccCc-hHHHHHHHHHHHH
Q 046039 227 LLNACAKLGA-IRQGEWIHNFLVT 249 (502)
Q Consensus 227 ll~~~~~~~~-~~~a~~~~~~~~~ 249 (502)
+..++...|+ +++|...++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877765
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=1.3e-08 Score=85.29 Aligned_cols=138 Identities=13% Similarity=-0.005 Sum_probs=100.7
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-C----------------HHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-D----------------AIIWGS 395 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~----------------~~~~~~ 395 (502)
..|+++.+.+.|+..... .......+..+...+.+.|++++|...|++.... | + ...|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555433221 1123445666777777888888888888766431 1 1 268889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEe
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA 475 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (502)
++.+|...|++++|+..++++++.+|+++.++..++.+|...|++++|+..+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------- 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------------------- 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh
Q 046039 476 GGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 476 ~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
+|++.++...++.++..+++
T Consensus 152 ----~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 152 ----NPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp ----STTCHHHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHHHH
Confidence 45666777777777766654
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=9.8e-08 Score=73.11 Aligned_cols=112 Identities=13% Similarity=-0.070 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 399 (502)
...+......+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|...+++... .| +...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345666777788888999999999888764 244577888888999999999999999888764 34 57789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 046039 400 CRKHGNIEMAKQAAKQIIELD------KNESCGYVLMSNLYA 435 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 435 (502)
+...|++++|+..|+++++++ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 888888887776644
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=9.1e-08 Score=78.35 Aligned_cols=130 Identities=9% Similarity=0.051 Sum_probs=104.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHhcCCH--
Q 046039 298 AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA-LGRAGLL-- 374 (502)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 374 (502)
...|++++|+..+++..... +.+...+..+..++...|++++|...|+...... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999998888764 3467888899999999999999999999988742 3467778888888 7789998
Q ss_pred HHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 375 EEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 375 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
++|...|+++.. .| +...+..++..+...|++++|...|+++++..|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999988764 34 577889999999999999999999999999999987655443
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=9.1e-08 Score=80.23 Aligned_cols=153 Identities=11% Similarity=0.071 Sum_probs=84.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHhcCCH
Q 046039 299 MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKP-SIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 374 (502)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..... +..+ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555565553333322 112234455555566666666666666666554311 1111 234455666666677777
Q ss_pred HHHHHHHHhCCC----CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCC
Q 046039 375 EEAEKLIRSMPS----DP-D----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDK--NES----CGYVLMSNLYAASYQ 439 (502)
Q Consensus 375 ~~A~~~~~~~~~----~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 439 (502)
++|...+++... .+ + ...+..++..+...|++++|...++++++..+ .++ ..+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777666655432 12 2 23456677777777777777777777775321 111 234667777777777
Q ss_pred chHHHHHHHHhhh
Q 046039 440 FEEAMEERLLMKE 452 (502)
Q Consensus 440 ~~~A~~~~~~~~~ 452 (502)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=7.6e-08 Score=75.55 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 400 (502)
..+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...|+++.. .| ++..+..++.++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 45566677788899999999999998864 344677888889999999999999999988764 24 567888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
...|++++|...|++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999988776655443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.7e-07 Score=75.64 Aligned_cols=99 Identities=16% Similarity=0.036 Sum_probs=79.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+.+.|++++|+..|++... .| +...|..++.+|...|++++|+..|+++++++|+++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455677777888888888888888887754 24 6678888888888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHhhhcCC
Q 046039 435 AASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~ 455 (502)
...|++++|+..+++..+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHHHHhCC
Confidence 888888888888887765443
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=1.1e-07 Score=86.71 Aligned_cols=116 Identities=16% Similarity=0.021 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----------------AIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
...+..+...|.+.|++++|...|+++.. .|+ ...|..++.+|.+.|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666666666666655532 122 4789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
|+++.++..++.+|...|++++|+..++++.+. .|++...+..++.++..+++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------------------------YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 45556677777777666554
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.67 E-value=9.9e-08 Score=74.51 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIEL-------DKNESCGY----VLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..|..++.++.+.|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999 99999999 99999999999999999999998764
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=5.7e-07 Score=70.85 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWG 394 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 394 (502)
+...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|...+++... .| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 5566777777888888888888888887743 344 56777888888899999999998887653 24 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.++.++...|++++|...|+++++.+|+++.++..+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888887766443
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=1e-07 Score=73.27 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=51.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-DPD-A---IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVLMSNLYA 435 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 435 (502)
+...+...|++++|...|+++.. .|+ . ..+..++.++...|++++|+..|+++++..|++ +..+..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44445555666666655555432 122 1 355555666666666666666666666666665 445666666666
Q ss_pred hcCCchHHHHHHHHhhh
Q 046039 436 ASYQFEEAMEERLLMKE 452 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~ 452 (502)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=2.6e-07 Score=77.44 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=56.5
Q ss_pred hcCCHHHHHH---HHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCchH
Q 046039 167 KCGEIDESRR---LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQ----NI-KPSEFTMVSLLNACAKLGAIR 238 (502)
Q Consensus 167 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~ 238 (502)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +. +.....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223445666666666667777766666665541 11 112334555555666666666
Q ss_pred HHHHHHHHHHHc---CC-C--CchhHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 239 QGEWIHNFLVTN---CF-E--LNTIVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 239 ~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
+|...+++..+. .. . .....+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666655543 10 1 1123344444555555555555554443
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=2.7e-08 Score=75.13 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 371 AGLLEEAEKLIRSMPSD----P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.|++++|+..|+++... | +...|..++.+|...|++++|+..|+++++.+|+++.++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554432 2 233555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhh
Q 046039 446 ERLLMKE 452 (502)
Q Consensus 446 ~~~~~~~ 452 (502)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.62 E-value=2.1e-07 Score=71.48 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-------SCGYV 428 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 428 (502)
...+..+...+...|++++|...|+++.. ..+...+..++..+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566778888888999999988887653 2367788889999999999999999999999988776 77899
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 429 LMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998753
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=2.6e-07 Score=71.79 Aligned_cols=113 Identities=11% Similarity=-0.118 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 046039 320 PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLL 397 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 397 (502)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...++++.. .| +...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45677888888888999999999999988874 244577888889999999999999999988764 24 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKN-----ESCGYVLMSNLY 434 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 434 (502)
.++...|++++|...|++++++.|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 555555555443
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.59 E-value=4.4e-07 Score=86.52 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...|..+..+|.+.|++++|+..++++.. . .+...|..++.+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46778889999999999999999988764 2 467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHhhhc
Q 046039 436 ASYQFEEAME-ERLLMKEV 453 (502)
Q Consensus 436 ~~g~~~~A~~-~~~~~~~~ 453 (502)
+.|++++|.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998875 55666443
No 169
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=1.1e-06 Score=70.71 Aligned_cols=127 Identities=17% Similarity=-0.016 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++..... .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 56667777888888888888888887753 236777888888888999999999999998874 244577888888899
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWG--SLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
...|++++|...|+++.. .| +...+. ..+..+...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999988754 23 444553 344447788999999999988765
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=1.7e-07 Score=83.15 Aligned_cols=91 Identities=8% Similarity=-0.097 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555544432 2234444444444444444444444444444332 122333333444444
Q ss_pred hcCChHHHHHHHh
Q 046039 268 KCGCPERALQVFN 280 (502)
Q Consensus 268 ~~g~~~~A~~~~~ 280 (502)
..|++++|...|+
T Consensus 84 ~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 84 EMESYDEAIANLQ 96 (281)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4444444444333
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=3.4e-07 Score=70.26 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----C----HHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----D----AIIW 393 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~----~~~~ 393 (502)
..+..+...+...|+++.|...++..... .+.+...+..+...|...|++++|...++++... | + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45566666777777888888877777663 2345666777777788888888888887776531 2 2 6678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
..++.++...|++++|.+.|+++++..| ++.....+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988 577777776655443
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=1.2e-05 Score=71.68 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCC-hHHHHHHH
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG--CPERALQVFNTVPKKG---LSCWNSMVFGLAMNGY-ENEAIKLF 310 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~-~~~a~~~~ 310 (502)
++++..+++.+.... +-+..+++.-..++...| .+++++.+++++.+.+ ..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555555543 334445544444444445 2555665555554432 3345544444555555 35666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcC--------------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc-----
Q 046039 311 SGLQSSNLKPDYISFIAVLTACNHS--------------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA----- 371 (502)
Q Consensus 311 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 371 (502)
.++++.++. |...|+.....+... +.++++++.+...... .|-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 666655432 444444333332222 2355566666665542 233444444333333332
Q ss_pred ------CCHHHHHHHHHhCCC-CCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 372 ------GLLEEAEKLIRSMPS-DPDAIIWGSLLSA-----CRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 372 ------g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+.++++++.++++.+ .|+. .|..+..+ ....|..++....+.++++++|.....|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 234455555544432 2332 22211111 112345556666666666666655555555443
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=1.8e-07 Score=89.51 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=97.8
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 046039 329 LTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 406 (502)
...+...|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|...++++.. .| +...|..++.+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34466788999999999988874 234578888899999999999999999988754 24 677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 046039 407 EMAKQAAKQIIELDKNESCGYVLMSNL--YAASYQFEEAMEERLL 449 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 449 (502)
++|++.|+++++++|+++..+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999988 8889999999999884
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.52 E-value=5.3e-07 Score=83.12 Aligned_cols=124 Identities=8% Similarity=-0.026 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-------------CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYK-------------IKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS- 386 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 386 (502)
...+..+...+.+.|++++|+..|++..+... ..| +...|..+..+|.+.|++++|+..++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45577777788888899999998888775100 111 245566666777777777777777766654
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 387 DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 387 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.| +...|..++.+|...|++++|+..|+++++++|++..++..++.++...++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 455666777777777777777777777777777777777777777666666666544
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.52 E-value=1.1e-06 Score=67.25 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=79.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSI---KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSLLS 398 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~ 398 (502)
.+...+...|++++|...|+.+.... +.+. ..+..+..++.+.|++++|...|+++.. .|+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556677788888888888877642 2223 4666778888888888888888887653 243 567888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
++...|++++|...|+++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999999999999999988766555543
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.51 E-value=5.7e-07 Score=85.73 Aligned_cols=95 Identities=15% Similarity=-0.001 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----------------AIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
..+..+...|.+.|++++|...|+++.. .|+ ...|..++.+|.+.|++++|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555566666666666655432 121 56889999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 422 NESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 422 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+++.++..++.+|...|++++|+..|+++.+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998754
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.1e-06 Score=83.37 Aligned_cols=163 Identities=7% Similarity=-0.118 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSN-LKPDY----ISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKP-SIKH 360 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 360 (502)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.+..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777776665421 11111 122333344456788888888887765321 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----cc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-------DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD---KNE----SC 425 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~----~~ 425 (502)
+..++..|...|++++|..+++++.. ++ ...++..++..|...|++++|..++++++... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 77888899999999999988876532 12 24578888899999999999999999988743 222 24
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888889999999887766643
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.48 E-value=2.1e-07 Score=84.85 Aligned_cols=147 Identities=10% Similarity=-0.059 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+..+...+.+.|++++|+..|++.... .|+... +...++..++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666666777777777777776653 233221 122333333322211 13667788888
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCCchHHHH
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA-ASYQFEEAME 445 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 445 (502)
.+.|++++|+..++++.. .| +...|..++.+|...|++++|+..|+++++++|+++.++..|..+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999888887754 24 67788888889999999999999999999889988888888887733 4566777777
Q ss_pred HHHHhhhcCC
Q 046039 446 ERLLMKEVKI 455 (502)
Q Consensus 446 ~~~~~~~~~~ 455 (502)
.++.|.....
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 8877765544
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=4.1e-07 Score=73.15 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES-CGYVLMSNL 433 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 433 (502)
+...|..+..+|.+.|++++|+..++++.. .| +...|..++.+|...|++++|...|+++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356788889999999999999999988764 34 677999999999999999999999999999999998 666666655
Q ss_pred HHh
Q 046039 434 YAA 436 (502)
Q Consensus 434 ~~~ 436 (502)
..+
T Consensus 142 ~~~ 144 (162)
T 3rkv_A 142 TER 144 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=0.00024 Score=63.75 Aligned_cols=174 Identities=10% Similarity=-0.011 Sum_probs=99.3
Q ss_pred hcCCChHHHHHHHHHhHhcCCCCCC-cccHHHHHHHHHhcC-CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-C-C
Q 046039 63 SQSSTPRNAILLFIDMLVTSPIQPQ-RLTYPSLFKAYAQLG-LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANC-G-F 138 (502)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 138 (502)
...+..++|+++++.+... .|+ ..+|+.--.++...| .+++++..++.++...+ -+..+|+.-..++... + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 3444556777877777754 343 335565555555666 47777777777777643 3666676666666555 5 5
Q ss_pred hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChH--------HHHHHHH
Q 046039 139 LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFK--------EALELFR 210 (502)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~ 210 (502)
+++++++++++.. .++ .|..+|+.-..++.+.|.++ ++++.++
T Consensus 141 ~~~EL~~~~k~L~-~dp----------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 141 PVSEIEYIHGSLL-PDP----------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp CHHHHHHHHHHTS-SCT----------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-hCC----------------------------CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 6666666665552 111 12223333222333333333 6777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCc-------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 211 EMQEQNIKPSEFTMVSLLNACAKLGA-------IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 211 ~m~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
++.+.. +-|...|+.....+.+.+. ++++.+.+..++... +-|...++.+-..+.+.|+
T Consensus 192 k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 192 EMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 776664 4466666666666665554 466666666666654 4456666655555555554
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=6.8e-07 Score=67.71 Aligned_cols=98 Identities=9% Similarity=-0.014 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 402 (502)
+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|+..|+++.. .| +...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556677888888888888888763 244677778888888888999999988887754 34 56788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 046039 403 HGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888764
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=6.3e-07 Score=71.70 Aligned_cols=129 Identities=17% Similarity=-0.001 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPS----DP----DAI 391 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~ 391 (502)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|...+++... .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666655432110111 13556666777777777777777766542 11 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDK------NESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.+..++..+...|++++|.+.++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888999999999888886432 1245678888889999999999998887764
No 183
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=9.9e-07 Score=67.48 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----C----HHHHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----D----AIIWG 394 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~----~~~~~ 394 (502)
.+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++...- | + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444555566666666666666665542 1233555666666666666666666666555320 1 1 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.++.++...|++++|++.|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7888888999999999999999887775
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=1e-06 Score=81.31 Aligned_cols=120 Identities=12% Similarity=-0.033 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSS---------------NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
.+..+...+.+.|++++|+..|++..+. .-+.+...+..+..++.+.|++++|+..++++.+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 4555666666677777777777666541 00112345666666666677777777777666642
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 354 IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
.+.+...+..+..+|...|++++|...|+++.. .| +...+..+..++...++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 233455666666667777777777776666543 23 4455555666666555555544
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=7.3e-07 Score=66.20 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---DAIIWGSLLS 398 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~ 398 (502)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|...+++.... | +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44555666677778888888888777663 2345666777788888888888888888776532 3 4678888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 046039 399 ACRKH-GNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 399 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 424 (502)
++... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88889 999999999999988888765
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.1e-07 Score=70.86 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYV 428 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 428 (502)
+...+..+...+.+.|++++|...|++... .| +...|..++.++...|++++|++.++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888899999999999887754 24 67789999999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHHh
Q 046039 429 LMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.++.++...|++++|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8999998888888877655443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=2.4e-07 Score=69.82 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
.|++++|+..|++..+. + -+.+...+..+..+|...|++++|...|+++.. .| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46778888888887753 1 133466778888889999999999999988764 24 5778888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHH
Q 046039 411 QAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~ 431 (502)
..++++++..|+++.......
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999886654333
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.8e-06 Score=62.97 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+...|..++..+...|++++|+..|+++++.+|+++.++..++.+|...|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999988643
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=3.7e-05 Score=68.63 Aligned_cols=179 Identities=10% Similarity=0.089 Sum_probs=130.3
Q ss_pred hHHHHHHHhcCCCC---CcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-HHHHHHHH
Q 046039 272 PERALQVFNTVPKK---GLSCWNSMVFGLAMNG--YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK-VNQAKDYF 345 (502)
Q Consensus 272 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 345 (502)
+++++.+++.+... +..+|+.-.-.+...| .+++++.++.++.+...+ |...|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 46677777766553 4557777777777777 489999999999997654 77788777777777787 68999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc------
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRA--------------GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH------ 403 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~------ 403 (502)
+.+... .+-|...|+....++.+. +.++++++.+.+... .| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 345666777666665554 457888888877653 34 677887666555554
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH---hcCCchHHHHHHHHhhhc
Q 046039 404 -----GNIEMAKQAAKQIIELDKNESCGYVLMSNLYA---ASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 404 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 453 (502)
+..+++++.++++++..|++...+..++.... ..|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45899999999999999999766555543222 357777888888888754
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=1.5e-05 Score=77.66 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=131.3
Q ss_pred hHHHHHHHhcCCCCC---cchHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC--
Q 046039 272 PERALQVFNTVPKKG---LSCWNSMVFGLAMNGY----------ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG-- 336 (502)
Q Consensus 272 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-- 336 (502)
.++|++.++++...+ ..+|+.-..++...|+ ++++++.++++.+.+.+ +..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 345677776665533 3366666666666665 88999999999887544 6777877777778888
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG-LLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKH---------- 403 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~---------- 403 (502)
+++++++.++.+.+. -+-+...|+.-..++.+.| .++++.+.++++... | +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999874 2456777777777777888 899999999888764 4 778888888777663
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 046039 404 ----GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 404 ----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 442 (502)
+.++++++.+++++..+|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.36 E-value=1.9e-06 Score=62.60 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...|..++.+|...|++++|+..|+++++.+|+++.++..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788899999999999999999999999999999999999999999999999999999888754
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=1.9e-06 Score=81.93 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=100.9
Q ss_pred HHhcCCCHHHHHHHHHHhhhhc--CC---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETY--KI---KP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDA-IIWG 394 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~ 394 (502)
.+...|++++|+.++++..+.. -+ .| ...+++.|+.+|...|++++|..++++... .|++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999988876532 11 22 256788999999999999999999887643 2543 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIE-----LDKNESCG---YVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.|+..|...|++++|..+++++++ +.|++|.+ ...+..++..+|++++|+..++.++++..+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999986 57887754 567888899999999999999999876543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=2.8e-06 Score=67.87 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC----Chh
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PD----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP----SIK 359 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 359 (502)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555566666666665555432100 11 13566667777778888888888777654211111 144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS----DP----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.+..+...+...|++++|...+++... .. ....+..+...+...|++++|.+.+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566777888888888888888876642 11 23467788899999999999999999988754
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.3e-05 Score=75.88 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=100.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-Cc
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPS----------------EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-LN 255 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 255 (502)
...+.+.|++++|++.|..+++...... ...+..+...|...|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4566778888888888888877542211 123556666777777777777777666543111 11
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 046039 256 T----IVVTAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSS--NL-- 318 (502)
Q Consensus 256 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 318 (502)
. .+.+.+...+...|+++.|..++...... + ..++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333334456666666665543210 0 124555566666666666666666555432 11
Q ss_pred CCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 319 KPD-YISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 319 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
++. ...+..++..|...|++++|..+++...... +.++. ...+..++..+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111 2345555555666666666666665544321 11111 2233444455555566666665555443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.27 E-value=3.6e-06 Score=59.73 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...+..+...+...|++++|...|++... .| +...+..++.++...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666777788888888888888877653 23 56778888889999999999999999999999999988888888877
Q ss_pred hcC
Q 046039 436 ASY 438 (502)
Q Consensus 436 ~~g 438 (502)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.26 E-value=5.8e-06 Score=58.60 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678889999999999999999999999999999999999999999999999999999998754
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=3.3e-06 Score=76.93 Aligned_cols=153 Identities=12% Similarity=0.011 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
...+..+...+.+.|++++|...|++.....+... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788888899999999999998664332211 1222333444433221 13677888899999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHH-HHhcCCHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSA-CRKHGNIEMAKQA 412 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~-~~~~~~~~~A~~~ 412 (502)
|++++|+..++..... .+.+...+..+..+|...|++++|...|+++... | +...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 2446788899999999999999999999998753 5 34455556555 3445678889999
Q ss_pred HHHHHhcCCCCcc
Q 046039 413 AKQIIELDKNESC 425 (502)
Q Consensus 413 ~~~~~~~~p~~~~ 425 (502)
|.++++..|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.24 E-value=2.1e-06 Score=81.62 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=93.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chH
Q 046039 366 DALGRAGLLEEAEKLIRSMPS---------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNES---CGY 427 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~ 427 (502)
..+...|++++|+.++++... .|+ ..+++.|+.+|...|++++|..+++++++ +.|++| ..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345688999999998876532 243 34789999999999999999999999986 456665 468
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 428 VLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
..|+.+|..+|++++|+.++++..+-.. ...+..||...++..+|++.+..+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998865321 22346799999999999999877665
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=3.6e-06 Score=65.74 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS--------DPD-AIIW----GSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.|..+..++.+.|++++|+..+++... .|+ ...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 667777777777777777776665532 454 5578 899999999999999999999999999998877
Q ss_pred HHHHHH
Q 046039 427 YVLMSN 432 (502)
Q Consensus 427 ~~~l~~ 432 (502)
..-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 665553
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=5.6e-06 Score=61.92 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=57.5
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 377 AEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 377 A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
|...|+++.. .| +...|..++..|...|++++|+..|+++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445554432 23 56677778888888888888888888888888888888888888888888888888888777654
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=7.9e-07 Score=69.26 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 370 RAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGN----------IEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+.+++++|.+.+++... .| +...|..++.++...++ +++|+..|+++++++|+++.+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 44556666666665543 23 56666666666666655 46999999999999999999999999999887
Q ss_pred C-----------CchHHHHHHHHhhhcCC
Q 046039 438 Y-----------QFEEAMEERLLMKEVKI 455 (502)
Q Consensus 438 g-----------~~~~A~~~~~~~~~~~~ 455 (502)
| ++++|++.|+++.+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999887654
No 202
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=5.8e-06 Score=79.11 Aligned_cols=91 Identities=24% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
.+...+.+.|++++|.+.|+++.. .| +...|..++.+|.+.|++++|++.++++++++|+++..+..++.+|...|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 345567789999999999998764 34 5789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhc
Q 046039 441 EEAMEERLLMKEV 453 (502)
Q Consensus 441 ~~A~~~~~~~~~~ 453 (502)
++|++.++++.+.
T Consensus 91 ~eA~~~~~~al~~ 103 (477)
T 1wao_1 91 RAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.15 E-value=1.1e-05 Score=57.16 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 388 PDAIIWGSLLSACRKHGN---IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+++..+..++.++...++ .++|..+++++++.+|+++.....++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467788888888865555 799999999999999999999999999999999999999999999876653
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.11 E-value=2.8e-05 Score=60.26 Aligned_cols=89 Identities=9% Similarity=-0.082 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA--- 436 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 436 (502)
|...|...+.+++|.++|++.....++..+..|...|.. .+++++|.+.|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555554444444555555555554 45555555555555543 344555555555555
Q ss_pred -cCCchHHHHHHHHhhhcC
Q 046039 437 -SYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 437 -~g~~~~A~~~~~~~~~~~ 454 (502)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555666666655555544
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.08 E-value=9.3e-06 Score=76.04 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=92.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC---C------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---ch
Q 046039 365 VDALGRAGLLEEAEKLIRSMPS---D------PD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNES---CG 426 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~---~------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~ 426 (502)
+..+.+.|++++|..++++... + |+ ..+++.++.+|...|++++|+.+++++++ +.|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4446678899999998876643 1 22 34788999999999999999999999986 456665 46
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 427 YVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
+..|+.+|..+|++++|+.+++++.+--. ...+..||...+++..|++....++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999998875321 22346799999999999998887764
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.96 E-value=7.1e-06 Score=63.89 Aligned_cols=109 Identities=11% Similarity=-0.027 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL----------LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH 403 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~ 403 (502)
+.+++|.+.++...+. -+.+...|..+..++.+.++ +++|+..|++... .| ....|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3556666666666553 23345566656666665554 3477777776653 34 456777778777766
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 404 -----------GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 404 -----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
|++++|++.|+++++++|++..+...+-. .++|-++.-.+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhccCccccc
Confidence 48999999999999999998755544432 24555555544443
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=0.00013 Score=71.18 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=124.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC----------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK----------VNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
....++|++.++++...++. +...|+.--.++...|+ ++++...++.+.+. .+-+...|+.-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34457889999999986433 45566665555655666 89999999999874 3556778887778888
Q ss_pred hcC--CHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------
Q 046039 370 RAG--LLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHG-NIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS------- 437 (502)
Q Consensus 370 ~~g--~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 437 (502)
+.| +++++.+.++++.+ . .+...|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 77999999999875 2 47889999898999999 999999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHhhhcCCc
Q 046039 438 -------YQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 438 -------g~~~~A~~~~~~~~~~~~~ 456 (502)
+++++|+++++++....+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5578899988888765443
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.93 E-value=1.1e-05 Score=75.48 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=79.5
Q ss_pred hcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS---------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNES---CGYVLMS 431 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~ 431 (502)
..|++++|..++++... .|+ ..+++.|+.+|...|++++|+.+++++++ +.|++| ..+..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788888888776532 133 34789999999999999999999999986 456665 4688999
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHH
Q 046039 432 NLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLN 491 (502)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 491 (502)
.+|..+|++++|+.+++++.+-.. ...+..||...+++..|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME------------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH------------------HHcCCCChHHHHHHHHHh
Confidence 999999999999999998865321 223466887777766654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.90 E-value=5.5e-05 Score=54.51 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-DP-DAI-IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
....+.+.|++++|...|+++.. .| +.. .|..++.++...|++++|++.|+++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45667788888888888887654 24 556 77888888888888888888888888888888776532 334
Q ss_pred hHHHHHHHHh
Q 046039 441 EEAMEERLLM 450 (502)
Q Consensus 441 ~~A~~~~~~~ 450 (502)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.90 E-value=3.9e-07 Score=82.84 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=158.4
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHH
Q 046039 35 GDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRV 114 (502)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 114 (502)
++++.|...-++..+| ..|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+...
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566666666555443 45667777777777777776655211 25556777777777777777777777666
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC-----------
Q 046039 115 VKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS----------- 183 (502)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------- 183 (502)
.+.. .++.+=+.|+-+|++.++..+-++ ....|+......+.+-|...|.++.|.-+|..+..
T Consensus 110 Rk~~--ke~~IDteLi~ayAk~~rL~elEe----fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 110 RKKA--RESYVETELIFALAKTNRLAELEE----FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp STTC--CSTTTTHHHHHHHHTSCSSSTTTS----TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred HHHh--cccccHHHHHHHHHhhCcHHHHHH----HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 5542 233444567777777777655333 23356666666777777777777777666655521
Q ss_pred -------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 184 -------------RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 184 -------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
.++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|-+++-+.+++.....
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 3677888888888888887766554433331 222 1223556677778888877777766633
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----------CcchHHHHHHHHHhcCChHHHHH
Q 046039 251 CFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-----------GLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
. ......|+.|.-.|++- ++++..+.++..-.+ ....|..++-.|.+-.++|.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 34566777777777654 566666665543321 12368888888888888876654
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=4.7e-05 Score=56.71 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.|+..|+...+ ..+.+...+..+..+|...|++++|...|++... .| +...|..++.++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666654 2234567777788888888888888888877653 23 56678888888899999999999999988
Q ss_pred hcCCCC
Q 046039 418 ELDKNE 423 (502)
Q Consensus 418 ~~~p~~ 423 (502)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877653
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00036 Score=53.85 Aligned_cols=112 Identities=13% Similarity=-0.068 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEE 376 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 376 (502)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 33444 666777778889999999998875 366777888888888 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 421 (502)
|..+|++..+..++..+..|...|.. .+++++|.+.|+++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998777788899999999998 8999999999999988643
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.68 E-value=0.00014 Score=55.99 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG---LLEEAEKLIRSMPSD--P--DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~A 409 (502)
....+.+.|.+.... + +++..+.-.+..++++.+ +.++++.+|+++... | ....+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666666553 2 367777777788888877 566888888776542 4 244666777888888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHH
Q 046039 410 KQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l 430 (502)
.+.++.+++.+|++..+....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 888888888888877665544
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0016 Score=58.41 Aligned_cols=137 Identities=11% Similarity=0.001 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc----CC-C---HHHHHHHHHHhhhh
Q 046039 286 GLSCWNSMVFGLA--MNG---YENEAIKLFSGLQSSNLKPD-YISFIAVLTACNH----SG-K---VNQAKDYFTLMTET 351 (502)
Q Consensus 286 ~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~~-~---~~~a~~~~~~~~~~ 351 (502)
+..+|...+.+.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ . .......++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4555655554432 222 346788888888875 343 3344433333320 00 0 00001111111110
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 352 YKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
...+.++..|..+...+...|++++|...++++.. +|+...|..++..+.-.|++++|.+.|++++.++|..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 02233444555554444445666666665555442 35555555555555556666666666666666655543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.00034 Score=50.21 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESC-GYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+..+...|++++|+..|+++++.+|+++. .+..++.+|...|++++|++.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44455556666666666666666666655 66666666666666666666666555443
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00016 Score=52.15 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+...+..+..+|.+.|++++|+..|+++.. .| +...|..++.+|...|++++|++.|++++++.|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3566777788888888888888888887754 24 4567888888888888899998888888876654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=0.00036 Score=65.19 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHhhhhc--CCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETY--KIKP---S-IKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDA-IIWGSLL 397 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~ 397 (502)
..|++++|+.++++..+.. -+.| + ..+++.|..+|...|++++|..++++... .|++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999988876521 1222 2 46788999999999999999999887643 2543 4789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHHH
Q 046039 398 SACRKHGNIEMAKQAAKQIIE-----LDKNESCGYVL 429 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~ 429 (502)
..|..+|++++|+.+++++++ +.|++|.+...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999987 57888865443
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.44 E-value=0.00065 Score=49.31 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 427 (502)
+...+..++..+.+.|++..|..+|+.+.. .+...++..|+.++.+.|++++|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 333445566666677777777776665432 13466889999999999999999999999999999998876
Q ss_pred HHHH
Q 046039 428 VLMS 431 (502)
Q Consensus 428 ~~l~ 431 (502)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.39 E-value=0.12 Score=50.53 Aligned_cols=123 Identities=10% Similarity=-0.017 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYIS----FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
.+.+.|...+....... ..+... ...++......+...++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998886543 223322 223333344455356667777765432 2344444555555668899999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 377 AEKLIRSMPSDP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 377 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
|...|+.|...+ .....-=++.++...|+.++|..+|+.+.+ + .++|..++
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999998653 233333466678889999999999999975 3 35666554
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.37 E-value=0.00086 Score=62.73 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=79.2
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HH
Q 046039 329 LTACNHSGKVNQAKDYFTLMTETY--KIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDA-II 392 (502)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~ 392 (502)
+..+...|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++.. .|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998887531 12222 46788899999999999999999887643 2443 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHHHH
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNESCGYVLM 430 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 430 (502)
++.|+..|...|++++|+..++++++ +.|++|.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 89999999999999999999999987 678888665443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.33 E-value=0.00079 Score=57.74 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCC-CCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchH
Q 046039 374 LEEAEKLIRSMPS-DPD---AIIWGSLLSACRKH-----GNIEMAKQAAKQIIELDKNE-SCGYVLMSNLYAAS-YQFEE 442 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 442 (502)
...|...+++..+ .|+ ...|..++..|... |+.++|.++|+++++++|+. ...+..++..+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4566666666553 455 55788888888884 99999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHhhhcCCccCCc
Q 046039 443 AMEERLLMKEVKIEKEPG 460 (502)
Q Consensus 443 A~~~~~~~~~~~~~~~~~ 460 (502)
|.+++++....++...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887765455
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.29 E-value=0.0022 Score=46.40 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD-------KNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+..-+..++..+...|++..|...|+.+++.. +..+.++..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566789999999999999999999999842 345678999999999999999999999998753
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.14 E-value=0.0027 Score=48.80 Aligned_cols=67 Identities=6% Similarity=-0.075 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 PDAIIWGSLLSACRKHG---NIEMAKQAAKQIIELD-K-NESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
++..+...+.+++.+++ +.++++.+++.+++.+ | ++...++.|+.+|.+.|++++|.++++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45566666666666666 4446666666666655 5 345566666666666666666666666665443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.14 E-value=0.042 Score=40.59 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=97.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+.+.+.+-.. ...++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~N-lKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhc-HHHHHHHHHHhcc---
Confidence 34467778888887777663 2445566665555555566666777777655443333211 1234444444432
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.......+..+..+|+-+.-.+++..++.-.|.+|.+...++.+|.+.|+..+|.++++++-++|++
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33345556677888999999999999987777888999999999999999999999999999999985
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.05 E-value=0.0025 Score=47.04 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE---AEKLIRSMPSD--P--DAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~ 408 (502)
.....+.+-|...... + .++..+--.+..++.+..+... ++.+++.+... | .-.....|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3455556666655553 3 2666666667778887776655 78888877654 3 12345567778888999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHH
Q 046039 409 AKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
|.+.++.+++.+|+|..+.....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999998877655543
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.094 Score=53.78 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=97.2
Q ss_pred HHHHhcCCchhHHH-HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHH
Q 046039 96 KAYAQLGLARDGAQ-LHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDES 174 (502)
Q Consensus 96 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 174 (502)
......++++.|.+ ++.. + ++......++..+.+.|..+.|.++.+.- ..-.......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHH
Confidence 33445677777765 4411 1 11223366777788888888888765321 1223456678888888
Q ss_pred HHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC
Q 046039 175 RRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (502)
.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+....+.+.....|.
T Consensus 672 ~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 672 RDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 8887765 3567888999999999999999999988743 33444445556676666655555554431
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
++....+|.+.|++++|.+++.+
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333445666777777666554
No 227
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.022 Score=51.16 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHH--hcCC---CHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHh---cC--C------HHHHHHHH
Q 046039 319 KPDYISFIAVLTAC--NHSG---KVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGR---AG--L------LEEAEKLI 381 (502)
Q Consensus 319 ~p~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g--~------~~~A~~~~ 381 (502)
+.+...|...+++. ...+ +..+|..+|++..+. .|+ ...+..+..+|.- .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44556666666553 3333 457899999999864 454 4455544444431 11 1 11222222
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 382 RSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 382 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
..+.. ..++.+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.++++...++.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22222 257778888888888889999999999999999974 667789999999999999999999988776553
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.88 E-value=0.0071 Score=42.54 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 355 KPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+.++..+..+..++...++ .++|..++++... .| ++..+..++..+.+.|++++|+..|+++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4567777777777765544 7899999988764 34 6778888999999999999999999999999988543
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.019 Score=58.93 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=26.4
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
..|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.
T Consensus 664 ~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345666666654332 244566666666666666666666666654
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.56 E-value=0.066 Score=40.22 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 355 KPSIKHYSCMVDALGRAGLL---EEAEKLIRSMPS-DP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
.|+..+--.+..++.+..+. .+++.+++.+.. .| .-...-.|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45655555566666666543 456666666543 23 2234455667778888888888888888888887765544
Q ss_pred H
Q 046039 429 L 429 (502)
Q Consensus 429 ~ 429 (502)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.46 E-value=0.048 Score=40.26 Aligned_cols=65 Identities=5% Similarity=-0.133 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 388 PDAIIWGSLLSACRKHGNIEM---AKQAAKQIIELD-K-NESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++..+-..+.+++.++++... ++.+++.++..+ | ......+.|+.++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444443333 444444444333 2 2233444444444444444444444444443
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.44 E-value=0.78 Score=46.72 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=53.4
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccCCC-------CC-------cchHHHHH----HHHhcCCC---h-HHHHHHHHHhH
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQIKK-------PN-------LFIWNTII----RGFSQSST---P-RNAILLFIDML 79 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~-------~~-------~~~~~~li----~~~~~~~~---~-~~a~~~~~~~~ 79 (502)
....++..| .+.|...+|..+.-++.+ -+ ...|..++ ......-. + .+.+++.-.+.
T Consensus 147 Lv~~iv~~c-l~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 147 IFERMIEKC-LKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence 345566677 788888888888777765 11 12333332 22221112 2 24444444443
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHH
Q 046039 80 VTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK 116 (502)
Q Consensus 80 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 116 (502)
.+ . +..-|..+++++.+.++.+.+.++|..+.+
T Consensus 226 ~k--~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 226 MN--M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HH--S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred Hh--C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33 1 122477888888999999999999999864
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.40 E-value=0.024 Score=42.02 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+-.|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33444455555555555555555555555555443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.02 E-value=0.00011 Score=67.18 Aligned_cols=240 Identities=12% Similarity=0.130 Sum_probs=162.3
Q ss_pred CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 153 FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA 232 (502)
Q Consensus 153 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 232 (502)
..+.+|..|..+..+.+.+.+|++-|-+ ..|+..|..++.+..+.|.+++-..++...++..-.| ..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 3556777788887777777777665533 3466677888888888888888888887776653233 33456777888
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CCcc
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK------------------------KGLS 288 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 288 (502)
+.++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888766544333 235666666677777778888877777765542 2456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
+|..+-.+|...+.+.-|.-.--.++- .|+ .+..++..|...|.+++.+.+++.... --.....+|+.|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence 999999999999988776555444332 111 123456678888999998888887663 2245677888888877
Q ss_pred HhcCCHHHHHHHHHhCCCC---C-------CHHHHHHHHHHHHhcCCHHHHHH
Q 046039 369 GRAGLLEEAEKLIRSMPSD---P-------DAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
++- ++++.++.++....+ | ....|.-++..|....+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 654 566777666655433 2 34467788888888888886643
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.031 Score=55.53 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
..-...|...|+++-|+++.++++..-|.+...|..|+.+|...|+|+.|+-.+..+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3345667889999999999999999999999999999999999999999999998885
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.42 Score=37.73 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=47.2
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
...|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+....+-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4455566555555444 2344556666666666666666655555432 1112222333345444443333
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
..... | -++.-...+.-.|+++++.++|.+..
T Consensus 85 iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 32221 1 12333344445566666666665544
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.33 Score=38.27 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=84.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
.......|+++.|.++.+.+ .+...|..+.......|+++-|++.|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34456778888888887654 4678888888888888888888888887642 2445566777788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh-cCCchHHHHHHHHh
Q 046039 374 LEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA-SYQFEEAMEERLLM 450 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 450 (502)
.++-.++-+....+.+ ++....++.-.|++++++++|.+.-. ..++..+.+ -|-.+.|.++...+
T Consensus 76 ~e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7776666544332222 34445566778999999888866532 112222333 46667777776665
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.39 E-value=0.57 Score=34.79 Aligned_cols=148 Identities=16% Similarity=0.082 Sum_probs=97.7
Q ss_pred HHHHHHH--HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhc
Q 046039 91 YPSLFKA--YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKC 168 (502)
Q Consensus 91 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (502)
...|+.+ +.-.|..++..++..+..+.. +..-+|.++--....-+-+-..++++.+.+-.|.. .+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hh
Confidence 3444444 345688888888888877753 45556666666666666666677776665322222 12
Q ss_pred CCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 169 GEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
+++......+-.+. .+....+..+.....+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33333333332221 34455566777888889989888888887554 37888888888999999999999999999888
Q ss_pred HcCCC
Q 046039 249 TNCFE 253 (502)
Q Consensus 249 ~~~~~ 253 (502)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88854
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.97 E-value=0.076 Score=40.26 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHhcCCCH------HHHHHHHHHhhhhcCCCCChh-HHHHHHH------HHHhcCCHHHHHHHHHhCCC
Q 046039 320 PDYISFIAVLTACNHSGKV------NQAKDYFTLMTETYKIKPSIK-HYSCMVD------ALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 386 (502)
-|..+|-..+....+.|+. +...++|++... .++|+.. .+...+. .+...++.++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667787777777777888 888888888877 5666531 1111111 12345788888888877642
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 387 --DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 387 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+.=...|......-.++|+..+|.+++.+++...|.....+....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 122667777777778888888888888888888777655544433
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.97 E-value=0.11 Score=39.42 Aligned_cols=56 Identities=5% Similarity=-0.161 Sum_probs=39.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 402 KHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 402 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
..++.++|.++|+.++++...-+.+|...+..-.++|+...|.+++......+..|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 44777788888888877655556667777777777888888888877777665543
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.73 E-value=0.35 Score=41.64 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=51.5
Q ss_pred HHHHHHHHccCC--CC---hhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHH
Q 046039 172 DESRRLFDKMVS--RN---TVSWNSMISGYVRN-----VKFKEALELFREMQEQNIKPSEFTMVSLLNACAK-LGAIRQG 240 (502)
Q Consensus 172 ~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 240 (502)
..|...+++.++ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 445555555533 32 34677777777773 7777777777777775422235566666666666 3777777
Q ss_pred HHHHHHHHHcCCC
Q 046039 241 EWIHNFLVTNCFE 253 (502)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (502)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777777776544
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.70 E-value=0.21 Score=38.73 Aligned_cols=28 Identities=11% Similarity=-0.095 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.+-+.++.||...|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 5778899999999999999999887644
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.42 E-value=0.11 Score=47.89 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh-----cCCccCCce
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE-----VKIEKEPGC 461 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 461 (502)
....++..+...|++++|+..+..++..+|-+..++..++.+|.+.|+..+|++.|+.+.+ .|++|.|..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445677788899999999999999999999999999999999999999999998888754 477776553
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.45 E-value=0.35 Score=33.60 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 303 ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 303 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.=+..+-++.+...++.|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 335666677777788999999999999999999999999999999987533 34556776664
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.34 E-value=8.1 Score=39.56 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=10.4
Q ss_pred CCCChhHHHHHhccCC
Q 046039 33 PAGDINYAYLVFTQIK 48 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~ 48 (502)
+.++.+.+.++|..+.
T Consensus 242 ~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 242 NLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3367777777777753
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.01 E-value=0.6 Score=36.20 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
..+..+|.+.+++++|+.+++.++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3455566666666666666666654
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.86 E-value=7.6 Score=37.94 Aligned_cols=48 Identities=2% Similarity=-0.022 Sum_probs=27.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
+..+...|....|...+..+.+..+ +.-...++......|.++.++..
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHH
Confidence 3456677888888777777665321 22233445455556666655543
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.56 E-value=1.6 Score=32.80 Aligned_cols=70 Identities=6% Similarity=-0.119 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 387 DPDAIIWGSLLSACRKHGNI---EMAKQAAKQIIELDKN-ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.|+..+-..+.+++.++.+. .+++.+++.+....|. .....+.|+.++.+.|++++|.++.+.+.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 46777777778888877654 4677788888777774 4567777777888888888888888887765443
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.89 E-value=1.5 Score=32.50 Aligned_cols=67 Identities=6% Similarity=-0.117 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 PDAIIWGSLLSACRKHGNI---EMAKQAAKQIIELDKN-ESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
|++.+--.+.+++.++.+. .+++.+++.+.+..|. ....++.|+.++.+.|++++|.++.+.+.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 5555555556666655533 3566666666655553 34555666666666666666666666665443
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.81 E-value=1.6 Score=30.19 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 165 LAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555555555555555555544433 24455555555555555554
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.45 E-value=1.5 Score=30.28 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 165 LAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+..+...| .|....|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 444555555555555555566666555433 35666666666666666655 4444443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.31 E-value=5.5 Score=37.19 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=128.5
Q ss_pred CCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH----HHHhc
Q 046039 199 NVKFKEALELFREMQEQ-----NIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID----MYCKC 269 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 269 (502)
.|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+....-.. ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788998888776542 345567778889999999999999888777666543222 222233333 22233
Q ss_pred CChH--HHHHHHhcCCC---CCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 046039 270 GCPE--RALQVFNTVPK---KGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSS--NLKPD---YISFIAVLTAC 332 (502)
Q Consensus 270 g~~~--~A~~~~~~~~~---~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~ 332 (502)
...+ .-..+.+.+.. .-.. ....|...+...|++.+|..++..+... |..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3332 23333433322 1111 3456788899999999999999998642 22222 23566667788
Q ss_pred hcCCCHHHHHHHHHHhhhh-cCCC--CC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 046039 333 NHSGKVNQAKDYFTLMTET-YKIK--PS--IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~-~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 407 (502)
...+++..|..++..+... .... |+ ...+...+..+...+++.+|-+.|.++ ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 8899999999999887431 1122 22 234566677777888888887776554 34455566666
Q ss_pred HHHHHHHHHH
Q 046039 408 MAKQAAKQII 417 (502)
Q Consensus 408 ~A~~~~~~~~ 417 (502)
....++..++
T Consensus 256 ~~~~~L~~~v 265 (445)
T 4b4t_P 256 KWKPVLSHIV 265 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555554
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.22 E-value=5.3 Score=32.57 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=37.9
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNAC 231 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 231 (502)
.++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.+..+ +...+..+.+ .++...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3333333344444444444333333333333344444444444444444432 3333333332 33444444445555
Q ss_pred hccCchHHHHHHHHHHHH
Q 046039 232 AKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~ 249 (502)
...+. ..+...+..+.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 55544 233333333433
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.15 E-value=3.8 Score=43.73 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC----CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVP----KKGL----SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAV 328 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 328 (502)
.-|..++..+.+.+.++.+.++-.... ..+. ..|..+...+...|++++|...+..+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 346667777777787777666554322 2221 1577788888888999988888877765433 34556666
Q ss_pred HHHHhcCCCHHH
Q 046039 329 LTACNHSGKVNQ 340 (502)
Q Consensus 329 ~~~~~~~~~~~~ 340 (502)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 666665555433
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.79 E-value=0.97 Score=33.36 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
+..+-++.+...++.|++......+++|.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 455666777778899999999999999999999999999999998753 444556776665
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.07 E-value=9.5 Score=33.65 Aligned_cols=170 Identities=13% Similarity=0.041 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLF----SGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
..|.++..-|.+.+++++|++++..- ...+.+.|+...|.++- +-+.+.+++++......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34556667788889999988876542 33455566665554443 5555667788887777777776
Q ss_pred hcCCCHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 046039 333 NHSGKVN-QAKDYFTLMTE---TYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 333 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 406 (502)
.....-+ .=..+.+.+.+ ..| -.-++.....+...|.+.+++.+|...|- ...++++..+..++.-+...+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 6544211 11222222211 112 23356777888899999999999999884 23344556776666555544432
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 407 EMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.++-- +....+--|...++...|..+++...+
T Consensus 184 ~e~dl--------------fiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPL--------------YCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22221 222223346778889999887766554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.35 E-value=4.5 Score=43.18 Aligned_cols=123 Identities=6% Similarity=-0.097 Sum_probs=80.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------------------
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD------------------- 387 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------- 387 (502)
.++..+...+.++.+.++..-. +.++..--.++.+|...|++++|.+.|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3444555556666555543322 223333344566777788888888888765320
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc----chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 ------PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK-NES----CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.-...|..++..+.+.|.++.+.++.+.+++..+ ++. ..|..+...+...|++++|...+..+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1123567778888889999999999999988543 333 2577788888899999999888877665443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.65 E-value=3.4 Score=37.83 Aligned_cols=70 Identities=6% Similarity=-0.085 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHHH
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVVT 260 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 260 (502)
..++..+...|+++++...+..+.... +.+...+..+|.++...|+..+|...|+.+.+ .|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445667778899999998888887765 67888889999999999999999888887654 47778766544
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.26 E-value=0.62 Score=39.43 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 367 ALGRAGLLEEAEKLIRS-MPSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
...+.|++++|+..... ++.+| |...-..|+..+|-.|++++|.+-++.+.+++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45577888888876654 44456 566667788888888888888888888888888744
No 260
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.99 E-value=2.1 Score=42.66 Aligned_cols=124 Identities=11% Similarity=0.041 Sum_probs=75.3
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHhHhcCCCCCCcccHH--HHHHHHHhcCC-chhHHHHHHHHHHh------CCCC-ch-
Q 046039 56 NTIIRGFSQSST-PRNAILLFIDMLVTSPIQPQRLTYP--SLFKAYAQLGL-ARDGAQLHGRVVKQ------GLEF-DQ- 123 (502)
Q Consensus 56 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~- 123 (502)
..++..+...++ .+.|+++|+++... .|...++. .++..+...++ --+|.+++.+.++. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344555555666 47799999998875 34333222 22222222221 22355555444321 1111 11
Q ss_pred ---------hHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccC
Q 046039 124 ---------FIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMV 182 (502)
Q Consensus 124 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 182 (502)
.....=...+...|+++-|+++-++... +.+..+|..|..+|...|+++.|+-.++.++
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1223334567778999999998887654 4567789999999999999999999988885
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.34 E-value=8 Score=31.11 Aligned_cols=54 Identities=20% Similarity=0.098 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 404 GNIEMAKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
++...+.++|..+.. ++-..+.+|...+..+...|++++|.++++.-++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666654 334455566666666666666666666666665555443
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.52 E-value=18 Score=31.63 Aligned_cols=165 Identities=7% Similarity=0.010 Sum_probs=95.1
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 161 MIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALE----LFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 161 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+..=|.+.+++++|++++.. -...+.+.|+...|-+ +++...+.+++++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 34455566666666666544 2344556677655555 45556667888898888888877765432
Q ss_pred hH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChHHH
Q 046039 237 IR-QGEWIHNFLV----TNC--FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN---GYENEA 306 (502)
Q Consensus 237 ~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a 306 (502)
-+ .-.++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...++..+..++--+... |...++
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 11 1233344443 332 2246788889999999999999999888643322344444443333332 332222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 307 IKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
- ...-..++ .|.-.|+...|..+++...+.
T Consensus 188 d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 188 A--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 1 11111222 244567888888888876543
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.05 E-value=6 Score=27.61 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 202 FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
.=++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+..+. .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33455556666666677777777777777777777777777777766553 222445555543
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.91 E-value=11 Score=31.92 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHhc
Q 046039 296 GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI----KHYSCMVDALGRA 371 (502)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 371 (502)
...+.|..++++.....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 3456677777777777766653 235566666777777778888888777776543 3332 233333322
Q ss_pred CCHHHHH-HHHHhCCC----CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 372 GLLEEAE-KLIRSMPS----DPDAIIWGSLLSAC--RKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 372 g~~~~A~-~~~~~~~~----~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+... ++|.--.. .....-...++.+. ...|+.++|.+.-.++.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 12211110 01122223344443 3457888888888887777666554
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.78 E-value=16 Score=29.58 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=7.6
Q ss_pred chhHHHHHHHHHHhCCC
Q 046039 122 DQFIHNTIIYMYANCGF 138 (502)
Q Consensus 122 ~~~~~~~l~~~~~~~g~ 138 (502)
+..+-...+..+...|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444444
No 266
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.69 E-value=28 Score=32.38 Aligned_cols=182 Identities=6% Similarity=0.034 Sum_probs=112.5
Q ss_pred cCCHHHHHHHHHccCC---------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hc
Q 046039 168 CGEIDESRRLFDKMVS---------RNTVSWNSMISGYVRNVKFKEALELFREMQEQ-NIKPSEFTMVSLLNAC----AK 233 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~----~~ 233 (502)
.++++.|++.+-.+.+ .+......++..|...|+++...+.+..+.+. |..+. ....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 3678888877755421 23445778889999999999998888776543 32222 223333332 22
Q ss_pred cCchHHHH--HHHHHHHH--cC-CCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCC----C-----cchHHHHHHH
Q 046039 234 LGAIRQGE--WIHNFLVT--NC-FEL---NTIVVTAIIDMYCKCGCPERALQVFNTVPKK----G-----LSCWNSMVFG 296 (502)
Q Consensus 234 ~~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-----~~~~~~l~~~ 296 (502)
....+... .+.+.+.. .| +-. .......|...|...|++.+|..++..+... . +..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23222211 11111110 11 111 2234467888999999999999999876521 1 2367777888
Q ss_pred HHhcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 297 LAMNGYENEAIKLFSGLQS----SNLKPDY--ISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|...+++..|..++++... ....|+. ..+...+..+...+++.+|.+.|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999988642 2222222 34556666677788888888888777653
No 267
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.58 E-value=16 Score=29.34 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHhccCc
Q 046039 219 PSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~ 236 (502)
++...-...+.++...|+
T Consensus 150 ~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444445554444
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.94 E-value=28 Score=30.44 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKL----FSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
..|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++...+.+.+++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44556667788888898888887652 3445566776665553 55556677888888887777776
Q ss_pred hcCCCHH-HHHHHHHHhh----hhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 046039 333 NHSGKVN-QAKDYFTLMT----ETYK-IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKH--- 403 (502)
Q Consensus 333 ~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 403 (502)
..-..-+ .-.++++.+. +..+ -.-++.....+...|.+.|++.+|...|-. ....++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCC
Confidence 5422111 1122222222 1101 123667788888999999999999988762 2122455666555555554
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
|...++--++-++ +--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 5555443333322 2235667888999888876653
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.41 E-value=16 Score=27.84 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=35.0
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 409 AKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 409 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
+.++|..+.. +.-..+.+|...+..+...|++++|.++++.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777765 445566677777777778888888888877777666544
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.17 E-value=13 Score=25.72 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
..++|..+-+.+...+. ...+--.-+..+.+.|+|++|..+.+...-+|...|.+|.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777777777766553 22222222345678889999988888888778777776644 466777777777777776
Q ss_pred CCCCCCHHHH
Q 046039 316 SNLKPDYISF 325 (502)
Q Consensus 316 ~~~~p~~~~~ 325 (502)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.16 E-value=14 Score=27.47 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=37.6
Q ss_pred HHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHH
Q 046039 70 NAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIY 131 (502)
Q Consensus 70 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 131 (502)
+..+-++.+... .+.|++......+++|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 71 ElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444455555544 566777777777777777777777777777766552 334555665554
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.95 E-value=38 Score=30.80 Aligned_cols=283 Identities=10% Similarity=0.032 Sum_probs=147.6
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCC--------CChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCCHHHH---
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVS--------RNTVSWNSMISGYVRN-VKFKEALELFREMQEQNIKPSEFTM--- 224 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~--- 224 (502)
....|...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+.. ..+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345677888888998888888877633 1233456677777664 33444455554444321 1111122
Q ss_pred ---HHHHHHHhccCchHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHhcCCC------CCcc--
Q 046039 225 ---VSLLNACAKLGAIRQGEWIHNFLVTNCFELN-----TIVVTAIIDMYCKCGCPERALQVFNTVPK------KGLS-- 288 (502)
Q Consensus 225 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~-- 288 (502)
..++..|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+..... .++.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2567778888888888888877776422211 33455556677788888887777765432 1111
Q ss_pred --hHHHHHHHHH-hcCChHHHHHHHHHHHHC-C-C-CCC---HHHHHHHHHHHhcCCCHHHHHHHHH-HhhhhcCCCCCh
Q 046039 289 --CWNSMVFGLA-MNGYENEAIKLFSGLQSS-N-L-KPD---YISFIAVLTACNHSGKVNQAKDYFT-LMTETYKIKPSI 358 (502)
Q Consensus 289 --~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~-~-~p~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 358 (502)
....-+..+. ..+++..|...|-+..+. . . .|. ...|..+.... .++..+...++. .....+ ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhcccccccc-CCccH
Confidence 1222233455 678888887766554321 1 0 111 11232222222 223222222222 111111 23455
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHH
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE--LDKNESCGYVLMSNLY 434 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~ 434 (502)
..+..++.+| ..+++.+...+++..... .|+.....+-..+ ..+.+..+. ..|-.......++..+
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~---------~~Ir~~~L~~i~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLY---------DTMLEQNLCRIIEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHH---------HHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH---------HHHHHHHHHHHhHhhceeeHHHHHHHH
Confidence 5555566554 566777777777665432 2333211110000 011111111 3566666677777655
Q ss_pred HhcCCchHHHHHHHHhhhcCC
Q 046039 435 AASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.- ..++++..+-+|...|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 43 67889999999987765
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.11 E-value=15 Score=25.58 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
..++|..+-+.+...+. ...+--.-+..+.+.|+|++|..+.+...-+|...|.+|.. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46677777777766553 22222222345677888888888888888778777776654 356677777777767766
Q ss_pred CCCCCCHHHH
Q 046039 316 SNLKPDYISF 325 (502)
Q Consensus 316 ~~~~p~~~~~ 325 (502)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.08 E-value=38 Score=29.85 Aligned_cols=164 Identities=11% Similarity=0.041 Sum_probs=93.1
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 161 MIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALEL----FREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 161 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+..=|.+.+++++|++++-. -...+.+.|+...+-++ ++...+.++++|......++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33445666666666666543 23345556665554444 3555667888888888888877766553
Q ss_pred hH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 046039 237 IR-QGEWIHNFLV----TNC--FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKL 309 (502)
Q Consensus 237 ~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (502)
-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-....+..+..++--+...+...+
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e---- 185 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT---- 185 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG----
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc----
Confidence 21 1122333333 223 334678888899999999999999998853222222455444443333332111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 310 FSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 310 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
++...-..++ -|...++...|..+++...+
T Consensus 186 ----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222233 34456788888887766654
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.78 E-value=9.8 Score=35.30 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD-----PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
...++..|.+.|++++|.+.|.++... .-...+..++..+...+++..+...++++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334555555555555555555444321 1223444445555555555555555555543
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.26 E-value=24 Score=27.30 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=28.3
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 409 AKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 409 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
+.++|..+.. +.-..+.+|...+..+...|++.+|.++++.-++.+-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555554 334455566666666666666666666666666555443
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.95 E-value=30 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQ 314 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (502)
.-...+.++...|. .++...+..+.
T Consensus 154 vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 154 VRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 33333444444443 23444444443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.33 E-value=20 Score=33.18 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHH--
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKK------GLSCWNSMVFGLAMNGYENEAIKLFSGLQS---SNLKPDYISF-- 325 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~-- 325 (502)
.+...+...|.+.|+++.|.+.|.++... -+..+...+..+...+++..+...+.+... .+..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888899999999999998877642 233677788888888999999888887654 3333333221
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
..-...+...+++..|.+.|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1222234567888888888888877643
No 279
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=71.06 E-value=29 Score=27.63 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 046039 374 LEEAEKLIRSMPSDPDAI--I-----WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~--~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 442 (502)
++.|+.+++.+...-+.. . -...+..|.+.|.+++|.+++++..+-.+++...-.-|..+-.+.+-+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~ 169 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHS 169 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcH
Confidence 567777887777653311 1 12345678889999999999999887776666666666654444333333
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.54 E-value=17 Score=31.24 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=35.0
Q ss_pred HHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHhCCChHHHHHHH
Q 046039 133 YANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVRNVKFKEALELF 209 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (502)
.+..|+.+-+..+++.-.. ..+...+.+.+...+..|+.+-+.-+++.-... +...-...+...+..|+.+-+.-++
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 3445555555555544211 112222233444455556665555555544322 1112223334445566665555555
Q ss_pred HH
Q 046039 210 RE 211 (502)
Q Consensus 210 ~~ 211 (502)
+.
T Consensus 182 ~~ 183 (285)
T 3kea_A 182 DY 183 (285)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.14 E-value=78 Score=29.90 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc-c-------hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKKGL-S-------CWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
..+++.+++.|...+.++.|..+..+..-+.. . -+.-++..+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677888888888888888888887754421 1 1223456667788888998888887664
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.60 E-value=60 Score=28.35 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...-+....+.+|+..|..+.++++++.|+.. ..++|.+++....+.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 667788889999999999999999999998522 235566776666544
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.21 E-value=73 Score=33.10 Aligned_cols=91 Identities=4% Similarity=-0.130 Sum_probs=55.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C----------------
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---P---------------- 388 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---------------- 388 (502)
++..|...|.++-+.++..- ++.++..--.++.+|...|++++|...|+++... +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 55566667777765553322 2233333345677788888888888888876421 0
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCc
Q 046039 389 ------DAIIWGSLLSACRKHGNIEMAKQAAKQIIE-LDKNES 424 (502)
Q Consensus 389 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 424 (502)
....|..++..+-+.+-++-+.++.+.+++ ..++++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 112456666667777777777777777776 334444
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.02 E-value=22 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.136 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
-...|......+...|++.+|.++|+..++
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555666666666666555
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=63.11 E-value=37 Score=29.06 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=117.3
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCC
Q 046039 6 KIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQ 85 (502)
Q Consensus 6 ~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (502)
.+.+.+.+.++......-.+.|... +..|+.+-+..+++.-..++...-.+.+...+..|+.+-+.-++ +. |..
T Consensus 14 ~v~~lL~~~~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~-ga~ 87 (285)
T 3kea_A 14 QLKSFLSSKDTFKADVHGHSASYYA-IADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL----FS-GLD 87 (285)
T ss_dssp HHHHHHHSTTTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HT-TCC
T ss_pred HHHHHHHhCCCCccCCCCCCHHHHH-HHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HC-CCC
Confidence 3444444444432222222334444 57899998888888744333322223444556677766554443 33 444
Q ss_pred CCcc---cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhH---HHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHH
Q 046039 86 PQRL---TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI---HNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWN 159 (502)
Q Consensus 86 p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 159 (502)
++.. -.+ .+...+..|+.+-+.- +++.|..++... +.+.+...+..|+.+-+..+++.-....+...-.
T Consensus 88 ~~~~d~~g~t-~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~ 162 (285)
T 3kea_A 88 DSQFDDKGNT-ALYYAVDSGNMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL 162 (285)
T ss_dssp TTCCCTTSCC-HHHHHHHTTCHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHH
T ss_pred CCCcCCCCCc-HHHHHHHcCCHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCc
Confidence 4432 223 3444456676654444 444455444322 1345555667888888887777655333332445
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 160 SMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 160 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+.+...+..|+.+-+.-+++.-..+ +..-++..+...+..|+. ++.+.+.+.|..++.... .-...|+
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~ 233 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDD 233 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTC
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCC
Confidence 5566777888888887777664222 222222223334445554 455566677777765542 2244666
Q ss_pred hHHHHHHHHHH
Q 046039 237 IRQGEWIHNFL 247 (502)
Q Consensus 237 ~~~a~~~~~~~ 247 (502)
.+-+.-+++.-
T Consensus 234 ~~iv~~Ll~~g 244 (285)
T 3kea_A 234 AEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 65555444443
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.69 E-value=38 Score=27.62 Aligned_cols=204 Identities=11% Similarity=-0.012 Sum_probs=88.2
Q ss_pred CCCCChhHHHHHhccCCCC---CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCccc---HHHHHHHHHhcCCch
Q 046039 32 SPAGDINYAYLVFTQIKKP---NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLT---YPSLFKAYAQLGLAR 105 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~ 105 (502)
++.|+++....+++.-..+ +.... ..+...+..|+.+-+.-++ +. |..++... -...+...+..|+.+
T Consensus 17 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~-~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYI----SK-GAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH----HT-TCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHH----Hc-CCcchhhcCCcCCChhHHHHHcCCHH
Confidence 4678888877777764432 22222 2344445666665443333 33 32222111 123344445556654
Q ss_pred hHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHcc
Q 046039 106 DGAQLHGRVVKQGLEFDQFI--HNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKM 181 (502)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 181 (502)
- ++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.. ..+....+.+..+....+..+-..-+.+.-
T Consensus 91 ~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 91 M----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp H----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred H----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 3 344445554443211 11233445566777766666665331 122233344444443333333333333332
Q ss_pred CCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCchHHHHHHHHHHHH
Q 046039 182 VSRNTV---SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM--VSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 182 ~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
...+.. .-...+...+..|+.+-+.-++ +.|..++.... ...+......|+.+-+..+++...+
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCcchhhccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 222111 1112334445566665444333 33433331110 1123344556666666555554433
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.65 E-value=62 Score=27.18 Aligned_cols=13 Identities=15% Similarity=0.113 Sum_probs=6.0
Q ss_pred hcCChHHHHHHHh
Q 046039 268 KCGCPERALQVFN 280 (502)
Q Consensus 268 ~~g~~~~A~~~~~ 280 (502)
..|+.+-+..+++
T Consensus 157 ~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 157 EKGHVEVLKILLD 169 (285)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3445444444443
No 288
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.93 E-value=41 Score=26.00 Aligned_cols=72 Identities=8% Similarity=0.044 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCChh
Q 046039 68 PRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ--GLEFDQFIHNTIIYMYANCGFLS 140 (502)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 140 (502)
.+.+++-+.+..+..|++++. .-..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 456666666665554887754 3456677777778889999999999988 77777777766778888888543
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.09 E-value=1.6e+02 Score=28.88 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=42.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 046039 192 MISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK--- 268 (502)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 268 (502)
...++.-.|+++.|++++-.. ...+..++...+..+.-.+ .. +.+..........-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---ID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 445566689999999987654 2455555555554433222 11 111111101112335667777764
Q ss_pred cCChHHHHHHHhcCCCC
Q 046039 269 CGCPERALQVFNTVPKK 285 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~ 285 (502)
..+...|.++|-.+.-.
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 57888888887766433
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.32 E-value=1.1e+02 Score=26.63 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC--HHHHHHHHHHhhhh
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK--VNQAKDYFTLMTET 351 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 351 (502)
....++.-|...|+.++|...++++...... .......+..+..+.++ .+....++..+.+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 3456777788888888888888887532111 12334444455554433 34556667666655
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.99 E-value=58 Score=24.80 Aligned_cols=62 Identities=11% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 046039 160 SMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVK--FKEALELFREMQEQNIKPSE 221 (502)
Q Consensus 160 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~ 221 (502)
.++.-|...++.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 44555555566666666666654441 1122333334433222 45566677777666644433
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.64 E-value=89 Score=25.11 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchh
Q 046039 65 SSTPRNAILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124 (502)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 124 (502)
.++...+.++|..|..+ |+--.. ..|......+-..|++.+|..+|+.-++.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 44466777888888777 664443 356666666777788888888888877777666443
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.40 E-value=1.5e+02 Score=30.88 Aligned_cols=106 Identities=7% Similarity=-0.056 Sum_probs=60.5
Q ss_pred HHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCch
Q 046039 26 ILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLAR 105 (502)
Q Consensus 26 ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 105 (502)
++..+ ...|..+-|.++...++. |...--.+.+++...|++++|...|++.-. |+..+....... .
T Consensus 816 l~~~L-~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~----------~ 881 (950)
T 4gq2_M 816 LVEKL-FLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVL----------R 881 (950)
T ss_dssp HHHHH-HHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGG----------H
T ss_pred HHHHH-HHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccch----------h
Confidence 55555 677888888877776664 444445677788999999999999988753 443332211100 0
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHh
Q 046039 106 DGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFD 147 (502)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 147 (502)
....++... +. ......-|..++..+-+.+-++.+.++-+
T Consensus 882 ~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 882 EFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 001111100 00 01122366777778878887777665544
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.39 E-value=70 Score=23.50 Aligned_cols=63 Identities=11% Similarity=0.240 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHH
Q 046039 160 SMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVK--FKEALELFREMQEQNIKPSEF 222 (502)
Q Consensus 160 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 222 (502)
.++.-|...|+.++|.+.++++..|. ..+...+..++-+.+. .+.+..++..+.+.|+-+...
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45555666666666666666665442 1122333334444322 456667777777666544433
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.16 E-value=97 Score=24.81 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=41.6
Q ss_pred hHHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHcCCC
Q 046039 188 SWNSMISGYV---RNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA-----IRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 188 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 253 (502)
.+--+|+++. +-.+++.|+-++-+|++.| .|....-..++.+.-..|. +..|...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344556654 4678999999999999999 7766666666666655553 23344445555555543
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.02 E-value=1.1e+02 Score=24.80 Aligned_cols=83 Identities=8% Similarity=-0.095 Sum_probs=37.0
Q ss_pred HhcCCChHHHHHHHHHhHhcCCCCCCccc--HHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCC
Q 046039 62 FSQSSTPRNAILLFIDMLVTSPIQPQRLT--YPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI--HNTIIYMYANCG 137 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 137 (502)
.+..|+.+.+..+++.+.+. +..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34556666666666554443 43333221 112333344455543 3334444454433211 112233344566
Q ss_pred ChhHHHHHHhhc
Q 046039 138 FLSEARLMFDEV 149 (502)
Q Consensus 138 ~~~~a~~~~~~~ 149 (502)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666666665554
No 297
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.70 E-value=1.3e+02 Score=25.40 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=8.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 046039 398 SACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.++.+.|+ ..+...+.++++
T Consensus 243 ~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 243 EAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHhcCc-hhhhHHHHHHHh
Confidence 33344444 234444444443
No 298
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=47.54 E-value=68 Score=26.09 Aligned_cols=113 Identities=9% Similarity=0.007 Sum_probs=53.3
Q ss_pred HHHHhCCChhHHHHHHhhcCCCCCee--eHHHHHHHHHhcCCHHHHHHHHHccCCCCh---hhHHHHHHHHHhCCChHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDTEFDVV--AWNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSMISGYVRNVKFKEA 205 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 205 (502)
...+..|+.+-+..+++.-. .++.. .-.+.+...+..|+.+-+.-+++.-..++. .-. ..+...++.|+.+-+
T Consensus 116 ~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v 193 (237)
T 3b7b_A 116 IWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCV 193 (237)
T ss_dssp HHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHhCCHhHH
Confidence 33445666666666655432 11111 111233444556776666666655433221 111 223344456665543
Q ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 206 LELFREMQEQNIKPSEFT--MVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
+.+.+.|..++... -..-+......|+...+.++.+.+.+
T Consensus 194 ----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 194 ----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp ----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444332110 11233445567777777777777665
No 299
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=47.49 E-value=63 Score=30.51 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
....++.|...|.++.. .| +...|+.|+......|+.-.|.-.|-+.+....+.+.+...|...+
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 33444445544444332 13 2334444444444445544455444444444333444444444333
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=46.78 E-value=1.1e+02 Score=24.44 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046039 191 SMISGYV---RNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG 235 (502)
Q Consensus 191 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 235 (502)
-+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4555554 45789999999999999997776665555655554444
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.69 E-value=62 Score=30.59 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh--hH-HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI--KH-YSCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
...++.+++.|...+.++.|..+.....--....++. .. +..+++.+.-.+++.+|.+.|..+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567778888888888888888888763100001111 11 22345666677888888887776554
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.61 E-value=1.3e+02 Score=25.13 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=10.6
Q ss_pred CCCCChhHHHHHhccCCC
Q 046039 32 SPAGDINYAYLVFTQIKK 49 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~ 49 (502)
++.|+++....+++.-..
T Consensus 13 ~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 13 VQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHcCCC
Confidence 456666666666665433
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.46 E-value=1e+02 Score=24.07 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=7.4
Q ss_pred HhCCChhHHHHHHhh
Q 046039 134 ANCGFLSEARLMFDE 148 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~ 148 (502)
+..|+.+-+..+++.
T Consensus 80 ~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 80 GAQGRTEILAYMLKH 94 (201)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555555533
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.23 E-value=57 Score=27.07 Aligned_cols=89 Identities=10% Similarity=-0.023 Sum_probs=51.2
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhcC-CCCC----CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 58 IIRGFSQSSTPRNAILLFIDMLVTS-PIQP----QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
-+..+....++++|.+++++..+.. ++++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 3667888899999999888775421 1221 1122233333333333334444444444 22 4455556666778
Q ss_pred HHhCCChhHHHHHHhhc
Q 046039 133 YANCGFLSEARLMFDEV 149 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~ 149 (502)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888877553
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=44.55 E-value=72 Score=21.95 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHH
Q 046039 6 KIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNA 71 (502)
Q Consensus 6 ~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 71 (502)
.|++.+.+.|+- +......+.. . ....+.+.|.++++.+++....+|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~-~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-A-GSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-S-TTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-c-cCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 355666666533 3333333332 1 1225678888888888887788888888888777766555
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.27 E-value=2e+02 Score=26.73 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=75.6
Q ss_pred CCChhHHHHHhccCCCCCcc-hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 046039 34 AGDINYAYLVFTQIKKPNLF-IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 112 (502)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 112 (502)
..+.+.|.++-.+.-=|.+. .|..-...+..+|++++|..+--...+ |+-.+..|.+.+-..=...|+..-.+.+|.
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 36677777777665444332 344556677788999999888776655 565666666555554445577777888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhc
Q 046039 113 RVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEV 149 (502)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (502)
.+.+.| ..+..--..+++.-...|+.+-.+.++.+=
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~ 455 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED 455 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC
Confidence 888876 455555556677777777777777777653
No 307
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.55 E-value=1.9e+02 Score=26.25 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhhcCCC-------CCeeeHHHHHHHHHhc-CCHHHHHHHHHccCC---CChhhH--
Q 046039 123 QFIHNTIIYMYANCGFLSEARLMFDEVDTE-------FDVVAWNSMIIGLAKC-GEIDESRRLFDKMVS---RNTVSW-- 189 (502)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~---~~~~~~-- 189 (502)
......|...|.+.|+.++..+++.....- .....-..++..+... +..+.-.++..+.++ .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999999887641 1223455667666653 344444555555432 122233
Q ss_pred ----HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCchHHHHHHHHHHHHcC--CCCchhH
Q 046039 190 ----NSMISGYVRNVKFKEALELFREMQEQNIKPS-----EFTMVSLLNACAKLGAIRQGEWIHNFLVTNC--FELNTIV 258 (502)
Q Consensus 190 ----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 258 (502)
..++..|...|++.+|.+++..+.+.=-..| ...+..-+..|...+++.++...+....... +.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2678899999999999999998876411222 2345556677888999999999998876532 3234433
Q ss_pred HH----HHHHHHH-hcCChHHHHHHHhcCC----CCCcc------hHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCH
Q 046039 259 VT----AIIDMYC-KCGCPERALQVFNTVP----KKGLS------CWNSMVFGLAMNGYENEAIKLFS-GLQSSNLKPDY 322 (502)
Q Consensus 259 ~~----~l~~~~~-~~g~~~~A~~~~~~~~----~~~~~------~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~p~~ 322 (502)
.. .-+..+. ..++|..|...|-+.. +.+.. .|..+ .+... ++..+.-.++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccH
Confidence 32 2234456 7899999887775532 22211 23222 22222 22222223222 21111134555
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDP-DAIIWGSLLSACR 401 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 401 (502)
..+..++.++ ..+++.....+++.... .+..|+.....+-..+. .-...+...+ . +| ...++..+...+.
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~--~Ir~~~L~~i---~-~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYD--TMLEQNLCRI---I-EPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHH--HHHHHHHHHH---H-TTCSEEEHHHHHHHHT
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHH--HHHHHHHHHH---h-HhhceeeHHHHHHHHC
Confidence 6666677665 45688887777777654 34455543222111111 1111222111 1 12 2234444444432
Q ss_pred hcCCHHHHHHHHHHHHh
Q 046039 402 KHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 402 ~~~~~~~A~~~~~~~~~ 418 (502)
. ..+++...+.+++.
T Consensus 328 -l-s~~evE~~L~~lI~ 342 (394)
T 3txn_A 328 -L-PMPQVEKKLSQMIL 342 (394)
T ss_dssp -C-CHHHHHHHHHHHHH
T ss_pred -c-CHHHHHHHHHHHHH
Confidence 2 56777777777776
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=43.42 E-value=29 Score=24.00 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=30.7
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 046039 270 GCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
...+.|.+++..+.+.|+.+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467888889998888888888888888877676655543
No 309
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.51 E-value=1.3e+02 Score=24.23 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHcCC
Q 046039 185 NTVSWNSMISGYV---RNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA-----IRQGEWIHNFLVTNCF 252 (502)
Q Consensus 185 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 252 (502)
+...+--+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344445666665 457899999999999999977766666666655555442 2334444444445553
No 310
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.10 E-value=69 Score=26.61 Aligned_cols=53 Identities=15% Similarity=-0.015 Sum_probs=29.2
Q ss_pred HhcCCChHHHHHHHHHhHhcCCCCCCcc-------cHHHHHHHHH--hcCCchhHHHHHHHHH
Q 046039 62 FSQSSTPRNAILLFIDMLVTSPIQPQRL-------TYPSLFKAYA--QLGLARDGAQLHGRVV 115 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 115 (502)
.++.|+.+....+++.+.+. +..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34567777777777766555 4444422 2233333322 5577776666666543
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.15 E-value=1.4e+02 Score=27.13 Aligned_cols=258 Identities=12% Similarity=0.083 Sum_probs=125.0
Q ss_pred CCCCChhHHHHHhccCCCCCc---chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc--cHHHHHHHHHhcCCchh
Q 046039 32 SPAGDINYAYLVFTQIKKPNL---FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL--TYPSLFKAYAQLGLARD 106 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 106 (502)
+..|+++-+..+++.-..++. ...+ .+...+..|+.+-+.-+++ . |..++.. .-.+.+...+..|+.+-
T Consensus 22 a~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 22 SFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQ----N-KAKVNAKAKDDQTPLHCAARIGHTNM 95 (437)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHH----H-TCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHh----C-CCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 467888888888876444332 2222 3334455677665544443 2 3333221 11233444566677654
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhcCCHHHHHHHHHccC
Q 046039 107 GAQLHGRVVKQGLEFDQFI--HNTIIYMYANCGFLSEARLMFDEVDTE--FDVVAWNSMIIGLAKCGEIDESRRLFDKMV 182 (502)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 182 (502)
+ +.+.+.|..++... -.+.+...+..|+.+.+..+++.-... .+...+ +.+...+..|+.+-+.-+++.-.
T Consensus 96 v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 96 V----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp H----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred H----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCC
Confidence 4 44445555443211 122344556778888888887764321 111122 34455667788887777777654
Q ss_pred CCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch
Q 046039 183 SRNT---VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEF---TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNT 256 (502)
Q Consensus 183 ~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 256 (502)
.++. ...+ .+...+..|+.+- ++.+.+.|..++.. ..+.+ ...+..|+.+-+. .+.+.|..++.
T Consensus 171 ~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g~~~~~ 240 (437)
T 1n11_A 171 HPNAAGKNGLT-PLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVAR----SLLQYGGSANA 240 (437)
T ss_dssp CTTCCCSSCCC-HHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHH----HHHHTTCCTTC
T ss_pred CCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHH----HHHHcCCCCCC
Confidence 3322 1122 2334455666543 44444555443321 12222 3344556655444 44444433322
Q ss_pred hH--HHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHH
Q 046039 257 IV--VTAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 257 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
.. -.+.+...+..|..+-+..+++.-...+. ..++. +...+..|+.+-+..+++
T Consensus 241 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~ 299 (437)
T 1n11_A 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIK 299 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 11 11223344567787777777765333221 11222 233345666654444433
No 312
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.61 E-value=2.8e+02 Score=27.31 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC
Q 046039 365 VDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
..-+...|++++|..+|.-+.+
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~ 471 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEE 471 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHhcC
Confidence 3356688999999999988773
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.08 E-value=1.4e+02 Score=24.04 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=8.5
Q ss_pred CCCCChhHHHHHhcc
Q 046039 32 SPAGDINYAYLVFTQ 46 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~ 46 (502)
++.|+++....+++.
T Consensus 14 ~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 14 AYSGKLDELKERILA 28 (231)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHh
Confidence 345666666666554
No 314
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.47 E-value=2e+02 Score=25.09 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+...-+....+.+|+..|..+.++++++.|+.. ..++|.+++....+.+
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 667788889999999999999999999987622 2345666666665443
No 315
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=38.47 E-value=1.8e+02 Score=24.49 Aligned_cols=162 Identities=9% Similarity=-0.038 Sum_probs=78.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA 371 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (502)
++...-+.+++++....++++.+.+...+..--+.+-.+|-+ .|....+++++..+.++.....+. ....++.-|.+.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~-~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE-DKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccH-HHHHHHHHHHHH
Confidence 345556678888888888888877766666555544444432 234455566655554321111121 112233333211
Q ss_pred ------CCHHHHHHHHHhCC--C--CCCHHHH-H-HHHHHHH-----hcC-----CHHHHHHHHHHHHh-----cCCCCc
Q 046039 372 ------GLLEEAEKLIRSMP--S--DPDAIIW-G-SLLSACR-----KHG-----NIEMAKQAAKQIIE-----LDKNES 424 (502)
Q Consensus 372 ------g~~~~A~~~~~~~~--~--~~~~~~~-~-~l~~~~~-----~~~-----~~~~A~~~~~~~~~-----~~p~~~ 424 (502)
.--.+.+.+++... . .+...+| . .-+..|. ..| -.+.|.+.|+.+.+ +.|.+|
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 00123333333331 0 1212122 1 1122111 111 23567777777654 567777
Q ss_pred chHHHHH----HHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMS----NLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.-+.... ..|.-.++.++|..+-+..-+..+
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4322222 234557999999998777655443
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.90 E-value=50 Score=27.49 Aligned_cols=89 Identities=7% Similarity=-0.039 Sum_probs=52.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCCchhH-------HHHHHHHHH--hCCChhHHHHHHhhcCC-------------
Q 046039 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI-------HNTIIYMYA--NCGFLSEARLMFDEVDT------------- 151 (502)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~~~~------------- 151 (502)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34455778999999999998888776665332 233333322 56877777777764211
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS 183 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 183 (502)
..+...++ .+...+..|+.+-+.-+++.-..
T Consensus 88 ~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 88 DVYYRGQT-ALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CSSEESBC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCCC-HHHHHHHcCCHHHHHHHHhCCCC
Confidence 12223333 34445566777777777765533
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.53 E-value=1.3e+02 Score=24.86 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 292 SMVFGLAMNGYENEAIKLFSGLQSS--NLKP----DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
--++.+....++++|..++++.... +.++ +.......+..-.....-.-+..+.+.+ . . .++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~--~-~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L--S-SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H--T-CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H--h-cCCHHHHHHHH
Confidence 3577888899999999988877642 2221 1111222222222222223333444444 2 1 34455556667
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 046039 366 DALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~ 385 (502)
..+.+.|+.++|.++|-+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 77888899999988886654
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.48 E-value=1.3e+02 Score=22.53 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 446677877776543 44555555566778888999888877666766666667777766643
No 319
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.29 E-value=1.4e+02 Score=24.26 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCh-hHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 338 VNQAKDYFTLMTETYKIKPSI-KHY-----SCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.+.|+.+|+.+.+...++... ..- ...+..|.+.|.+++|.+++++...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456677777766542221111 111 12344577888888888888877655
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.99 E-value=1.6e+02 Score=23.72 Aligned_cols=204 Identities=12% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HhcCCChHHHHHHHHHhHhcCCCCCCcc--cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhH---HHHHHHHHHhC
Q 046039 62 FSQSSTPRNAILLFIDMLVTSPIQPQRL--TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI---HNTIIYMYANC 136 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 136 (502)
.++.|+.+....+++ . |..++.. .-...+...+..|+.+-+ +.+.+.|..++... -.+.+...+..
T Consensus 16 A~~~g~~~~~~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 16 ATQYGIYERCRELVE----A-GYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHTTCHHHHHHHHH----T-TCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHcCChHHHHHHHH----c-CCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 456777666555443 3 4433322 122345555667776544 44445554332111 12334455667
Q ss_pred CChhHHHHHHhhcCCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 137 GFLSEARLMFDEVDTEFD---VVAWNSMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 137 g~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
|+.+-+..+++.-. .++ ...+ +.+...+..|+.+-+..+++.-..+ +....+.+..+....+. ....++
T Consensus 87 ~~~~~v~~Ll~~g~-~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~~-- 161 (240)
T 3eu9_A 87 GHLSMVVQLMKYGA-DPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS-VDPTRL-- 161 (240)
T ss_dssp TCHHHHHHHHHTTC-CTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS-STTHHH--
T ss_pred CCHHHHHHHHHcCC-CCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh-HHHHHH--
Confidence 78777777766532 222 2222 3345556678887777777654332 22233344444333332 233333
Q ss_pred HHHHCCCCCCHHH---HHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCCC
Q 046039 211 EMQEQNIKPSEFT---MVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIV--VTAIIDMYCKCGCPERALQVFNTVPK 284 (502)
Q Consensus 211 ~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (502)
+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -.+-+....+.|+.+-+.-+++...+
T Consensus 162 -L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 162 -LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp -HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHH----HHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred -HHhcCCCcchhhccCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 333333322111 01223334455666544 34444554443221 11234444667777776666655443
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.51 E-value=1.3e+02 Score=22.78 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCC
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGY--ENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 319 (502)
..++.-|...|+.++|..+++++..+.. .....+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4456666667777777777776654321 122233333333222 23455566666655544
No 322
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=35.48 E-value=70 Score=18.94 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccC
Q 046039 4 LKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQI 47 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~ 47 (502)
...-+++|..-|+.-..--.+.+|. .+.|++..|+.+++..
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~---~k~gDI~~aLD~lq~~ 50 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ---TKNYDIGAALDTIQYS 50 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH---HTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH---HccCCHHHHHHHhhhc
Confidence 4556778888888766665566666 3578888888877653
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.74 E-value=1.5e+02 Score=22.40 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677888776544 4455565555 6778999999998887777777766677777777654
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.57 E-value=2.4e+02 Score=25.65 Aligned_cols=322 Identities=12% Similarity=0.091 Sum_probs=153.5
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcc--cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchh--HHHHHHHHHH
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRL--TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF--IHNTIIYMYA 134 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 134 (502)
+...+..|+.+-+..++ +. |..|+.. .....+...+..|+.+-+..++ +.|..++.. .-.+.+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll----~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLL----QR-GASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHH----HT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH----Hc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHH
Confidence 34445667776555444 33 5555432 2234455566778776555444 445443321 1123445556
Q ss_pred hCCChhHHHHHHhhcCCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHH
Q 046039 135 NCGFLSEARLMFDEVDTEFD---VVAWNSMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 208 (502)
..|+.+-+.-+++.-. .++ ...+ +.+...+..|+.+-+..+++.-... +...++ .+...+..|+.+-+.
T Consensus 89 ~~g~~~~v~~Ll~~ga-~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~-- 163 (437)
T 1n11_A 89 RIGHTNMVKLLLENNA-NPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAE-- 163 (437)
T ss_dssp HHTCHHHHHHHHHHTC-CTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHH--
T ss_pred HCCCHHHHHHHHhCCC-CCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHH--
Confidence 7888888877777643 222 2222 3445567788998888888765332 222222 334455677765444
Q ss_pred HHHHHHCCCCCCHH---HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCC
Q 046039 209 FREMQEQNIKPSEF---TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIV--VTAIIDMYCKCGCPERALQVFNTVP 283 (502)
Q Consensus 209 ~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (502)
.+.+.|..++.. ..+. +...+..|+.+ +.+.+.+.|..++... -...+...+..|+.+-+..+++.-.
T Consensus 164 --~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 164 --LLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp --HHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred --HHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 444445443321 1122 23334456654 4445555554443221 1123344567788888887777533
Q ss_pred CCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC
Q 046039 284 KKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY---ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS 357 (502)
Q Consensus 284 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (502)
..+ ....+. +...+..|+.+-+..+ .+.|..++. ...+.+ ...+..|..+-+.-+++. |..++
T Consensus 237 ~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~-----g~~~~ 305 (437)
T 1n11_A 237 SANAESVQGVTP-LHLAAQEGHAEMVALL----LSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKH-----GVMVD 305 (437)
T ss_dssp CTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHH-----TCCTT
T ss_pred CCCCCCCCCCCH-HHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhC-----CccCC
Confidence 221 111222 2233456665544333 344433321 111222 223345666554444432 33222
Q ss_pred h---hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 358 I---KHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 358 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
. .-.+ .+...+..|+.+-+.-+++.-.. ..+...+..|. .....|+.+-+.-+++
T Consensus 306 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 306 ATTRMGYT-PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CCCSSCCC-HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred CCCCCCCC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHHH
Confidence 1 1112 23334567888777766664321 12222222232 2345666654444443
No 325
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.70 E-value=1.1e+02 Score=20.70 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 046039 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (502)
..++..+.+.++- +..-+..+.. .....++|..+++.+.+.|..+|..+..++...+...-
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 3455555555532 2222222221 24566778888888888887788877777777665433
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.62 E-value=1.5e+02 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=28.4
Q ss_pred hhHHHHHhccCCC-CCcchH--------HHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 37 INYAYLVFTQIKK-PNLFIW--------NTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 37 ~~~A~~~~~~~~~-~~~~~~--------~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
++.|+.+|+.+.+ .+ ... -..+..|.+.|.+++|.++|++...+
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 6788888888876 22 111 12245677888888888888886643
No 327
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.88 E-value=1.9e+02 Score=23.17 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=30.0
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 293 MVFGLA---MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 293 l~~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
+|+++. +.++.+.|+-++-+|++.| .|....-..++.+....|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 455544 4578899999999999988 666665566666665554
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.42 E-value=1.7e+02 Score=23.59 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=7.4
Q ss_pred cCCCHHHHHHHHHHhh
Q 046039 334 HSGKVNQAKDYFTLMT 349 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~ 349 (502)
..|+...+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444444555444443
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.00 E-value=1.1e+02 Score=19.98 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777777654 34555665554 566778888888777666666666666776666654
No 330
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.85 E-value=1.5e+02 Score=21.67 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCC
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGY--ENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 319 (502)
..++.-|...|+.++|...++++..+.. .....+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666677777777777777654321 122233333333321 24455566666655544
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.68 E-value=1.1e+02 Score=22.95 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=39.3
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 046039 83 PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFL 139 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (502)
|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 14 g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 14 GYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 7776654 234555555566 778999999998887777777766677778777744
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.38 E-value=1.5e+02 Score=22.20 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 173 ESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
.+.+.+....-+.+..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 8 ~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 8 EALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3444444433334444556667777777777899999999887766777777766777666664
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.18 E-value=1.1e+02 Score=22.38 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFL 139 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (502)
.++..+...+..-.|.++++.+.+.++..+..|....++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45566666677888999999998887777777777777888887754
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.14 E-value=1.2e+02 Score=22.65 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=40.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34566777777653 33444555555 668888998888877666766666666677766643
No 335
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.08 E-value=2.1e+02 Score=23.04 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHhhcCCCCCeee--HHHHHHHHHhcCC
Q 046039 95 FKAYAQLGLARDGAQLHGRVVKQGLEFDQFI--HNTIIYMYANCGFLSEARLMFDEVDTEFDVVA--WNSMIIGLAKCGE 170 (502)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 170 (502)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-. .++... -.+.+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCC
Confidence 4455677888888888877766665544321 1233444556777776666665433 222111 1123344455666
Q ss_pred HHHHHHHHHcc
Q 046039 171 IDESRRLFDKM 181 (502)
Q Consensus 171 ~~~a~~~~~~~ 181 (502)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66666666554
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.00 E-value=1.4e+02 Score=22.95 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=48.5
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCh
Q 046039 203 KEALELFRE-MQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN--CFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 203 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445554443 45678888764 455667777777888999999999887 7666766666667777777754
No 337
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.90 E-value=36 Score=20.94 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHhHhcCCCCCCcc
Q 046039 65 SSTPRNAILLFIDMLVTSPIQPQRL 89 (502)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~p~~~ 89 (502)
.-+++.|...|..+.....++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4688999999999887656777653
No 338
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=30.80 E-value=2.3e+02 Score=23.43 Aligned_cols=50 Identities=16% Similarity=-0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHh-----cCCCCcchHHHH----HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 406 IEMAKQAAKQIIE-----LDKNESCGYVLM----SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 406 ~~~A~~~~~~~~~-----~~p~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.+.|.+.|+.+.+ +.|.+|.-+... ...|.-.|+.++|..+-+..-+..+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3567777777764 567777432221 1235568999999998777765544
No 339
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.75 E-value=1.8e+02 Score=22.14 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHHhh
Q 046039 107 GAQLHGRVVKQGLEFD-QFIHNTIIYMYANCGFLSEARLMFDE 148 (502)
Q Consensus 107 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (502)
+..+|..|...|+-.. ...|......+...|++.+|.++|+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444554444443322 22334444444445555555555443
No 340
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=30.25 E-value=2.4e+02 Score=23.53 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=80.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA 371 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (502)
++...-+.+++++.....+.+...+...+..--+.+-.+|-+ .|....+++++..+.++....-+ .-...++.-|...
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~-~~~~~~i~~yr~k 88 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGN-EKKIEMVRAYREK 88 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CC-HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHH
Confidence 345566778888888888888887777666555555444432 24445566666555433110101 0111223333211
Q ss_pred ------CCHHHHHHHHHhCC----CCC--CHHHH-HH-HHHHHH-----hc-----CCHHHHHHHHHHHHh-----cCCC
Q 046039 372 ------GLLEEAEKLIRSMP----SDP--DAIIW-GS-LLSACR-----KH-----GNIEMAKQAAKQIIE-----LDKN 422 (502)
Q Consensus 372 ------g~~~~A~~~~~~~~----~~~--~~~~~-~~-l~~~~~-----~~-----~~~~~A~~~~~~~~~-----~~p~ 422 (502)
.--.+.+.+++... ..+ ...+| .- -+..|. .. .-.+.|.+.|+.+.+ +.|.
T Consensus 89 ie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pt 168 (248)
T 3uzd_A 89 IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPT 168 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 00123333333331 113 22222 11 122111 11 123567777777654 6677
Q ss_pred CcchHHHH----HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 423 ESCGYVLM----SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 423 ~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+|.-+... ...|.-.++.++|..+-+..-+..+
T Consensus 169 hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 169 HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 77432222 1235568999999988777655443
No 341
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.23 E-value=2.1e+02 Score=22.86 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=31.5
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 293 MVFGLA---MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 293 l~~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
+|+++. +.++.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455554 45789999999999999987776666666666655444
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.10 E-value=61 Score=26.26 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCC-C--CH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 374 LEEAEKLIRSMPSD-P--DA--II-----WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 374 ~~~A~~~~~~~~~~-~--~~--~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
++.|+.+++.+... + +. .. -...+..|.+.|.+++|.+++++..+-.|.+...-.-|..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 56667676666432 1 11 11 12355679999999999999999987655544444444443
No 343
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.79 E-value=1.8e+02 Score=25.91 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
-.+...|..++..+.|.+++.+|++.+-+..
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 3455567777777888888888887776653
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.24 E-value=1.1e+02 Score=22.79 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 046039 92 PSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFL 139 (502)
Q Consensus 92 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (502)
..++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345666666667788999999998887777777777777778777754
No 345
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.62 E-value=2.8e+02 Score=24.34 Aligned_cols=53 Identities=17% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 164 GLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
..+..|+.+-+.-+++.-...+...-...+...+..|+.+-+..+++.....|
T Consensus 59 ~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 59 LACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccC
Confidence 33444555555555544332222111122333445566666555555544334
No 346
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=27.58 E-value=1.9e+02 Score=26.24 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHHHHHHHHh-----cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCC-CCCCC
Q 046039 409 AKQAAKQIIE-----LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGG-RLHPK 482 (502)
Q Consensus 409 A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 482 (502)
++.+|.+++. ..-.+...|..++-.|.|.+++.+|+..+-+...- .+. ...-+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V---------------------i~~YNY~re 356 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV---------------------IQDYNYCRE 356 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTSCCCGG
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH---------------------HHHcCCCcc
Confidence 4444444443 23445667888888999999999999888766421 111 22347
Q ss_pred chHHHHHHHHHHH
Q 046039 483 APEVYLLLNDLGL 495 (502)
Q Consensus 483 ~~~~~~~l~~~~~ 495 (502)
+.|||..+-+|-.
T Consensus 357 DeEIYKEf~eIAn 369 (550)
T 3u84_A 357 DEEIYKEFFEVAN 369 (550)
T ss_dssp GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7888887766653
No 347
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.48 E-value=1.9e+02 Score=21.78 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=40.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34566777665543 344555555566778888888888877666777766677777777754
No 348
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.32 E-value=2.1e+02 Score=22.01 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=32.3
Q ss_pred HHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchh
Q 046039 71 AILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124 (502)
Q Consensus 71 a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 124 (502)
+.++|..|..+ |+-... ..|......+-..|++..|..+|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~-~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQ-GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHT-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 55666666666 554433 245555555666677777777777777666555443
No 349
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.04 E-value=2.8e+02 Score=23.18 Aligned_cols=215 Identities=12% Similarity=0.011 Sum_probs=104.8
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchh----HHHHHHHHHHhCCCCchhH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARD----GAQLHGRVVKQGLEFDQFI 125 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~ 125 (502)
+|...-...+.++.+.+. ..+...+..+... ++...-...+.++...|.... ...++..+... .++..+
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~v 107 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD----KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACV 107 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC----CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHH
Confidence 444444444455555453 3445555555443 444444555556666553322 22233322122 345555
Q ss_pred HHHHHHHHHhCCC-----hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCC
Q 046039 126 HNTIIYMYANCGF-----LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNV 200 (502)
Q Consensus 126 ~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (502)
....+.++...|. ...+...+......++..+-...+.++...++.+....+.+.+..++...-...+.++...+
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 5555555555441 33455555444446666666666666776666443333444445566655555555555544
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 046039 201 -KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVF 279 (502)
Q Consensus 201 -~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 279 (502)
....+...+..+.+ .++...-...+.++...|+......+...+ +. ++ +....+.++.+.|.. .+...+
T Consensus 188 ~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l-~d---~~--vr~~a~~aL~~i~~~-~~~~~L 257 (280)
T 1oyz_A 188 YDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDEL-KK---NT--VYDDIIEAAGELGDK-TLLPVL 257 (280)
T ss_dssp CCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHH-TS---SS--CCHHHHHHHHHHCCG-GGHHHH
T ss_pred cCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHh-cC---cc--HHHHHHHHHHhcCch-hhhHHH
Confidence 23445555555543 345666666677777777654444444433 22 22 223345556666664 334444
Q ss_pred hc
Q 046039 280 NT 281 (502)
Q Consensus 280 ~~ 281 (502)
..
T Consensus 258 ~~ 259 (280)
T 1oyz_A 258 DT 259 (280)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 350
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.04 E-value=1.3e+02 Score=19.45 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.++..+...|++++|...|-+++..-|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 46677777888888888888877766553
No 351
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.03 E-value=2.4e+02 Score=22.49 Aligned_cols=84 Identities=7% Similarity=-0.012 Sum_probs=37.5
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI--HNTIIYMYANC 136 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 136 (502)
+...++.|+.+....+++.-... ...++....+. +...+..|+.+- ++.+.+.|..++... -.+.+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 44455667777777666653321 11222222222 333345555443 334444454443211 11222333455
Q ss_pred CChhHHHHHHhh
Q 046039 137 GFLSEARLMFDE 148 (502)
Q Consensus 137 g~~~~a~~~~~~ 148 (502)
|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 666655555544
No 352
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.94 E-value=1.8e+02 Score=21.85 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=43.4
Q ss_pred hHhcCCCCCCcccHHHHHHHHHhcC-CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 046039 78 MLVTSPIQPQRLTYPSLFKAYAQLG-LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS 140 (502)
Q Consensus 78 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 140 (502)
+.+. |++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 8 l~~~-g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDA-GLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHT-TCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHc-CCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4444 7766553 234556666665 67889999999999887778777777778888887543
No 353
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.80 E-value=96 Score=17.79 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHh
Q 046039 6 KIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVF 44 (502)
Q Consensus 6 ~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~ 44 (502)
.-+.++..-|+........+|.... |+++.|...+
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~----gnv~~Ave~L 43 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSG----GSVQGALDSL 43 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhC----CCHHHHHHHH
Confidence 3456777778644444455555554 8888887754
No 354
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.76 E-value=1.5e+02 Score=29.16 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 375 EEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
+.|.++.+.|. ...............|++.-|.++.+.++..+|+|......++.+|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44455555443 222333445566788999999999999999999999988888888877664
No 355
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.46 E-value=1.9e+02 Score=21.19 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 211 EMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 211 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45667877776543 4455555555 6778999999998887666766666666677666643
No 356
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.54 E-value=2.7e+02 Score=22.52 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 291 NSMVFGLA---MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 291 ~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
-.+|+++. +.++.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33455554 45789999999999999988777666666666665544
No 357
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.46 E-value=91 Score=19.17 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhHhcCCCCCCcccHHHHHHHH
Q 046039 68 PRNAILLFIDMLVTSPIQPQRLTYPSLFKAY 98 (502)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 98 (502)
.++|.+.|.+|++..++.| ..+|...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s-~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDS-TWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCS-SCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCC-CCcHHHHHHHh
Confidence 3678888888888855544 45788877776
No 358
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.17 E-value=2.5e+02 Score=24.33 Aligned_cols=66 Identities=12% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCCh---hhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHH
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSMISGYVRNVK--FKEALELFREMQEQNIKPSEFT 223 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 223 (502)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35677888889999999999999876621 223334444444333 4567778888877775544443
No 359
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.06 E-value=1.4e+02 Score=20.26 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.+......+.+.|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44556667777777777777666654
No 360
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.53 E-value=1.7e+02 Score=19.78 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHH
Q 046039 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNA 71 (502)
Q Consensus 5 ~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 71 (502)
..|++.+.+.|+- +...+..+.. .....+.|.++++.++.....+|..++.++...+...-|
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~----~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN----EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT----SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc----CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3456666666533 2333333332 346777888888888777777888888888777654433
No 361
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=23.97 E-value=96 Score=26.29 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhH-----HHHHhccCCC--CCcchHHHHHHHHhcCCChHHH---HH
Q 046039 4 LKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINY-----AYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNA---IL 73 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~-----A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a---~~ 73 (502)
...+++.+.+.|........+.++-...-|.|+..+ +..++..+.. |-...+..++.++ +++++..- +.
T Consensus 111 L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~ 189 (266)
T 2of3_A 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLL 189 (266)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHH
Confidence 445566677777777777777777766567777643 3334433333 4444566666654 55565433 33
Q ss_pred HHHHhHhcCCCC
Q 046039 74 LFIDMLVTSPIQ 85 (502)
Q Consensus 74 ~~~~~~~~~~~~ 85 (502)
.+..+.+..|..
T Consensus 190 ~l~~li~~~G~~ 201 (266)
T 2of3_A 190 VIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHCSG
T ss_pred HHHHHHHhcCCC
Confidence 344444444554
No 362
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.94 E-value=1.3e+02 Score=20.00 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCc
Q 046039 67 TPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLA 104 (502)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 104 (502)
..++|...|..|+...+|.|+ .+|...+...+.-.++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCcc
Confidence 457899999999998677665 4788888776654444
No 363
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.91 E-value=1.5e+02 Score=21.87 Aligned_cols=57 Identities=4% Similarity=0.074 Sum_probs=40.3
Q ss_pred CCCCCcccHHHHHHHHHhcC-CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 046039 83 PIQPQRLTYPSLFKAYAQLG-LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS 140 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 140 (502)
|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-++.+...|-+.
T Consensus 13 g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 13 GLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp TCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 7666543 345566666666 67889999999998887777777777777777777543
No 364
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.47 E-value=1.3e+02 Score=23.43 Aligned_cols=45 Identities=9% Similarity=-0.033 Sum_probs=25.4
Q ss_pred CCCCChhHHHHHhccCCCC---CcchHHHHHHHHhcCCChHHHHHHHHH
Q 046039 32 SPAGDINYAYLVFTQIKKP---NLFIWNTIIRGFSQSSTPRNAILLFID 77 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 77 (502)
++.|+.+-+..+++.-..+ +...++.+. ..+..|+.+-+..+++.
T Consensus 47 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 47 VHNNDIEIAKALIDRGADINLQNSISDSPYL-YAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence 4678888888888764443 222333333 33456776655555433
No 365
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.37 E-value=2.3e+02 Score=21.04 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=10.2
Q ss_pred CCCCChhHHHHHhcc
Q 046039 32 SPAGDINYAYLVFTQ 46 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~ 46 (502)
++.|+.+....+++.
T Consensus 16 ~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 16 AKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHTCHHHHHHHCCT
T ss_pred HHhCCHHHHHHHHHc
Confidence 356777777777764
No 366
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=22.61 E-value=3.5e+02 Score=22.78 Aligned_cols=162 Identities=12% Similarity=-0.004 Sum_probs=76.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSN--LKPDYISFIAVLTACNH-SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
++....+.+++++....++++.+.+ ...+..--+.+-.+|-. .|....+++++..+..+...+.+. ....++..|.
T Consensus 14 ~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~-~~~~~i~~yr 92 (260)
T 1o9d_A 14 MAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE-EHVNSIREYR 92 (260)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcH-HHHHHHHHHH
Confidence 4455566788888888888887766 55555444444444322 234445555655554321111221 1222333332
Q ss_pred hc------CCHHHHHHHHHhCCC----CCCHHHHH--HHHHHHH-----hcC-----CHHHHHHHHHHHHh-----cCCC
Q 046039 370 RA------GLLEEAEKLIRSMPS----DPDAIIWG--SLLSACR-----KHG-----NIEMAKQAAKQIIE-----LDKN 422 (502)
Q Consensus 370 ~~------g~~~~A~~~~~~~~~----~~~~~~~~--~l~~~~~-----~~~-----~~~~A~~~~~~~~~-----~~p~ 422 (502)
.. .--.+.+.+++...- .+...+|. .-+..|. ..| -.+.|.+.|+.+.+ +.|.
T Consensus 93 ~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pt 172 (260)
T 1o9d_A 93 SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPT 172 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11 001223333333210 11111221 1111111 122 23567777777764 5677
Q ss_pred CcchHHHHH----HHHHhcCCchHHHHHHHHhhhcCC
Q 046039 423 ESCGYVLMS----NLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 423 ~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+|.-+.... ..|.-.|+.++|..+-+..-+..+
T Consensus 173 hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 209 (260)
T 1o9d_A 173 HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 209 (260)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 774322221 235557999999987776655433
No 367
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.56 E-value=3.4e+02 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=8.4
Q ss_pred HhcCCCHHHHHHHHHHh
Q 046039 332 CNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~ 348 (502)
+....+.+++.++++.+
T Consensus 86 ~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHH
Confidence 33444555555555544
No 368
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.53 E-value=2.8e+02 Score=21.30 Aligned_cols=60 Identities=5% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHh
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSD---P--DAIIWGSLLS------ACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 418 (502)
...|..-+..|-. |++-+|-++++.+-.. + +...|..||. ...+.||...|..++.+++.
T Consensus 33 ~~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 369
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.46 E-value=3.4e+02 Score=22.28 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCChHHHH--HHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 6 KIHAHLIKTGLAKDPIAAS--RILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 6 ~i~~~~~~~g~~p~~~~~~--~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
.+.+.+.+.|..++..... +.|... +..|+.+-+..+++.-.. .|...++.+..+..... .++.+.+.+
T Consensus 17 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~ 90 (261)
T 2xai_A 17 LSLRNLISQGWAVNIITADHVSPLHEA-CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS-----WDCVNLLLQ 90 (261)
T ss_dssp HHHHHHHHTTCCSSCCCTTCCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHH
Q ss_pred cCCCCCCcc-cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHH--HHHHHHHhCCChhHHHHHHhhcCCCCCeee
Q 046039 81 TSPIQPQRL-TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHN--TIIYMYANCGFLSEARLMFDEVDTEFDVVA 157 (502)
Q Consensus 81 ~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 157 (502)
. |..++.. .-.+.+...+..|+.+ +.+.+.+.|..++..... +.+...+..|+.+-+..+++.-........
T Consensus 91 ~-g~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 165 (261)
T 2xai_A 91 H-GASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG 165 (261)
T ss_dssp T-TCCSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTCCBT
T ss_pred C-CCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNT 186 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 186 (502)
-.+-+...++.|+.+-+.-+++.-..++.
T Consensus 166 g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 166 QDSPLHAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCChHHHHHHcCCHHHHHHHHHcCCCCCC
No 370
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.36 E-value=1.6e+02 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=31.9
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556666666777888888887776666666666566666666643
No 371
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.15 E-value=1.5e+02 Score=18.07 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHh
Q 046039 7 IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVF 44 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~ 44 (502)
-+.++...|+........+|.... |+++.|.+.+
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~----gnve~Ave~L 53 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSG----GSVQGALDSL 53 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHT----SCHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhC----CCHHHHHHHH
Confidence 446666777644444444454444 7777777655
No 372
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.10 E-value=1.6e+02 Score=18.47 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA 232 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 232 (502)
++.++..++...-.+.++..+.++.+.| ..+...|.--.+.++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4445555555555666666666666666 445555554444443
No 373
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.97 E-value=73 Score=19.57 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcchHHHHHHHH-HhcCCchHHHHHHHHhhhcCCccCC
Q 046039 412 AAKQIIELDKNESCGYVLMSNLY-AASYQFEEAMEERLLMKEVKIEKEP 459 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~ 459 (502)
..+.+.+..|+-.. ..+-.++ ...|+.+.|+..+-.|...+..+..
T Consensus 12 ~l~~L~emFP~ld~--~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 12 DLKAIQDMFPNMDQ--EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHCSSSCH--HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHCCCCCH--HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 34444455666332 1222233 4457788888888887766665543
No 374
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.65 E-value=1.5e+02 Score=18.98 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCc
Q 046039 67 TPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLA 104 (502)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 104 (502)
..++|...|..|++..++.|+ .+|...+..+..-.++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCccc
Confidence 468899999999988666555 4788888766654433
No 375
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.64 E-value=3.3e+02 Score=22.52 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=29.5
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC-------CcccHHHHHHHHH--hcCCchhHHHHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP-------QRLTYPSLFKAYA--QLGLARDGAQLHGRV 114 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 114 (502)
.-.+.|..+ ++.|+.+.+..+++..... +... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 12 ~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 12 YDRRSIFDA-VAQSNCQELESLLPFLQRS-KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp CCHHHHHHH-HHTTCSSTTTTHHHHHHHS-CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred ccchHHHHH-HHcCCHHHHHHHHHHHhhc-ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 334444443 4567777666666655443 3222 2233344444433 246666666555553
No 376
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=20.50 E-value=4e+02 Score=24.30 Aligned_cols=71 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-----cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCC-CCCCC
Q 046039 409 AKQAAKQIIE-----LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGG-RLHPK 482 (502)
Q Consensus 409 A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 482 (502)
+.++|.+++. ..-.+...|..++-.+.+.+++.+|++.+-+... +.+. ...-+
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~---------------------Vi~~YnY~re 341 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT---------------------VIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHTTSCCCTT
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh---------------------hhhhcccccc
Q ss_pred chHHHHHHHHHHHHHHhc
Q 046039 483 APEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 483 ~~~~~~~l~~~~~~~~~~ 500 (502)
+.|||..+..|.+.+-+.
T Consensus 342 DeEiYke~~eIanelip~ 359 (489)
T 4gq4_A 342 DEEIYKEFFEVANDVIPN 359 (489)
T ss_dssp CHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHhhhH
No 377
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=20.20 E-value=1.5e+02 Score=19.44 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=14.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHH
Q 046039 83 PIQPQRLTYPSLFKAYAQLGLARDGAQLHGR 113 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 113 (502)
+++|+..||+-+...+-+..-...+..+.++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555555665555544333333344444333
No 378
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.15 E-value=1.6e+02 Score=18.71 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhcc
Q 046039 7 IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQ 46 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~ 46 (502)
-+.++...|+........+|.... |+++.|++++-.
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~----Gnve~Ave~L~~ 57 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATD----GDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTT----SCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcC----CCHHHHHHHHHh
Confidence 455566666544433344444444 677776665544
No 379
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.15 E-value=2.8e+02 Score=20.78 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG 235 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 235 (502)
+..-..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344455555555555666666666665554455555444444444444
No 380
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.03 E-value=1e+02 Score=28.68 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 046039 362 SCMVDALGRAGLLEEAEKLIRS 383 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~ 383 (502)
+.|...|.+.|+..-+..+++.
T Consensus 180 n~L~kiYFkl~~~~lckni~k~ 201 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKN 201 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555555555555555543
Done!