Citrus Sinensis ID: 046043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
LTKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVDGKNWLPAWV
ccccccccccccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEccccccEEEcccccccccccEEEEEEcccEEEEccEEEccccccccccccccEEEEEEcccEEEEEcEEEEEccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEEcccccccEEEEEcccccccccEEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHccccccEEcccccccccc
cccccHHHHHHHHccccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEcccccccccEEEEEEEcccEEEEEEEEEccccccccccccccEEEEEEccccEEEEEEEEEEcccEEHHHccccHEEccEEEEEEEEEEccHEEEEEcccEEEccccccccEEEEEEccccccccccEEEEEccEEEccccccccccHHHHccEEEEEEcccccccccccccccccccccEEEEHEEccccccccccccccccccccHHHHHHccHHHHHcccccccccc
ltkktvfdapllteklntnrtikvdingdgdfkSIQDAINavpkgnpnwiIIHVRKgvyrekvyipedkpyifmrgngkgKTAIVWSQsatnnkdsatfsveaphfiafgisfkneaptgvaftsqnQSVAAFVGADMnafyhcafysthntlfdykgrhyyhncyiqGSIDFIFGRgrsifqnceifviddkrvkihgsitaqnredntdnsgfvfiegkvygtgdvylgrakgAYSRVVFAKTYlsrtivphgwtnwsyvgstdnlfqaeyrchgpgaeakhrvpwskqlsdQEAEKFMsidfvdgknwlpawv
ltkktvfdapllteklntnrtikvdingdgdFKSIQDAInavpkgnpnwiIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGsitaqnredntdnsgFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSrtivphgwtNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMsidfvdgknwlpawv
LTKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVDGKNWLPAWV
*******DAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATN**DSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQN****TDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGA******************KFMSIDFVDGKNWLPA**
*********PLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVDGKNWLPAWV
LTKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGP*************LSDQEAEKFMSIDFVDGKNWLPAWV
*TKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVDGKNWL****
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LTKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVDGKNWLPAWV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q9LSP1344 Probable pectinesterase 6 yes no 0.993 0.912 0.707 1e-135
Q9ZQA3407 Probable pectinesterase 1 no no 0.952 0.739 0.436 2e-69
Q8VYZ3383 Probable pectinesterase 5 no no 0.962 0.793 0.409 9e-66
Q9SIJ9352 Putative pectinesterase 1 no no 0.886 0.795 0.416 4e-63
Q9ZQA4333 Putative pectinesterase 1 no no 0.914 0.867 0.404 4e-59
Q8LPF3362 Probable pectinesterase 6 no no 0.917 0.801 0.391 4e-59
Q4PSN0335 Probable pectinesterase 2 no no 0.927 0.874 0.394 3e-58
O23038393 Probable pectinesterase 8 no no 0.965 0.776 0.378 4e-57
Q3E9D3330 Probable pectinesterase 5 no no 0.977 0.936 0.384 1e-55
O64479339 Putative pectinesterase 1 no no 0.911 0.849 0.387 7e-54
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function desciption
 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/314 (70%), Positives = 260/314 (82%)

Query: 3   KKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREK 62
           +KT FDAPLLTEK+ TNR+I VDI G GD+ S+Q AI+AVP GN NWII+HVRKG+Y+E+
Sbjct: 27  QKTKFDAPLLTEKIATNRSIIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKER 86

Query: 63  VYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVA 122
           V+IPE+KP+IFMRGNGKGKT I  SQS+ +N  SATF VEA HF+AFGIS +N+AP G+A
Sbjct: 87  VHIPENKPFIFMRGNGKGKTVIESSQSSVDNVASATFKVEANHFVAFGISIRNDAPVGMA 146

Query: 123 FTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIF 182
           FTS+NQSVAAFV AD  AFYHCAFYS HNTLFD KGRHYYH CYIQGSIDFIFGR  SIF
Sbjct: 147 FTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIF 206

Query: 183 QNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVF 242
            NCEIFVI DKRVK +GSITA +RE   + +G+VFI GKVYG  +VYLGRAKG YSRV+F
Sbjct: 207 NNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKVYGIDEVYLGRAKGPYSRVIF 266

Query: 243 AKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMS 302
           AKTYLS+T+VP GWTNWSY GST NL+  EY+CHGPGAE + R  W+K L+ QE E F+S
Sbjct: 267 AKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWAKDLTKQEVESFLS 326

Query: 303 IDFVDGKNWLPAWV 316
           IDF+DG +WLP W+
Sbjct: 327 IDFIDGTSWLPVWL 340
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1 Back     alignment and function description
>sp|O64479|PME10_ARATH Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
255564035350 Pectinesterase-2 precursor, putative [Ri 0.996 0.9 0.787 1e-150
224099129343 predicted protein [Populus trichocarpa] 0.993 0.915 0.780 1e-149
225431972348 PREDICTED: probable pectinesterase 67 [V 0.987 0.896 0.737 1e-142
356529131346 PREDICTED: probable pectinesterase 67-li 1.0 0.913 0.743 1e-142
255645453346 unknown [Glycine max] 1.0 0.913 0.740 1e-141
357448903350 Pectinesterase [Medicago truncatula] gi| 0.990 0.894 0.753 1e-139
449532879350 PREDICTED: probable pectinesterase 67-li 1.0 0.902 0.715 1e-139
297834608344 pectinesterase family protein [Arabidops 0.993 0.912 0.710 1e-135
15228955344 putative pectinesterase 67 [Arabidopsis 0.993 0.912 0.707 1e-133
147827142350 hypothetical protein VITISV_034766 [Viti 0.829 0.748 0.755 1e-119
>gi|255564035|ref|XP_002523016.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537738|gb|EEF39358.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 249/316 (78%), Positives = 283/316 (89%), Gaps = 1/316 (0%)

Query: 1   LTKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYR 60
           L+ +TV D+PLLT+K+ TNRTIKVDING GDF SIQ+AINAVP+ N  WIIIHVRKGVYR
Sbjct: 36  LSAQTVIDSPLLTQKIGTNRTIKVDINGKGDFTSIQEAINAVPQNNSKWIIIHVRKGVYR 95

Query: 61  EKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTG 120
           EKV+IP++KPYIF+RGNGKG+TA+VWS S+T+NK SATF+VEAPHFIAFGIS KNEAPTG
Sbjct: 96  EKVHIPKNKPYIFLRGNGKGRTALVWSLSSTDNKASATFTVEAPHFIAFGISIKNEAPTG 155

Query: 121 VAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRS 180
           VAFTSQNQSVAAFVGADM AFYHCAFYSTHNTLFDYKGRHYY +CYIQGSIDFIFGR RS
Sbjct: 156 VAFTSQNQSVAAFVGADMVAFYHCAFYSTHNTLFDYKGRHYYDHCYIQGSIDFIFGRARS 215

Query: 181 IFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRV 240
           IF +CE+FVI D RVKIHGSITA NRE + D+SGFVF++GKVYG GDVYLGRAKGAYSR 
Sbjct: 216 IFHSCELFVIADLRVKIHGSITAHNRESH-DDSGFVFVKGKVYGIGDVYLGRAKGAYSRT 274

Query: 241 VFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKF 300
           +FAKTYLSRTI P GWTNWSY G+T+NLFQAEY+CHGPGA+   RV W+KQL++ EAE F
Sbjct: 275 IFAKTYLSRTIDPRGWTNWSYSGTTENLFQAEYKCHGPGADTTDRVEWAKQLTEAEAEPF 334

Query: 301 MSIDFVDGKNWLPAWV 316
           MSIDF+DG+ WLP W+
Sbjct: 335 MSIDFIDGQQWLPVWL 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099129|ref|XP_002311381.1| predicted protein [Populus trichocarpa] gi|222851201|gb|EEE88748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225431972|ref|XP_002272939.1| PREDICTED: probable pectinesterase 67 [Vitis vinifera] gi|296083238|emb|CBI22874.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356529131|ref|XP_003533150.1| PREDICTED: probable pectinesterase 67-like [Glycine max] Back     alignment and taxonomy information
>gi|255645453|gb|ACU23222.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357448903|ref|XP_003594727.1| Pectinesterase [Medicago truncatula] gi|355483775|gb|AES64978.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449532879|ref|XP_004173405.1| PREDICTED: probable pectinesterase 67-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834608|ref|XP_002885186.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331026|gb|EFH61445.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228955|ref|NP_188331.1| putative pectinesterase 67 [Arabidopsis thaliana] gi|75311531|sp|Q9LSP1.1|PME67_ARATH RecName: Full=Probable pectinesterase 67; Short=PE 67; AltName: Full=Pectin methylesterase 67; Short=AtPME67; Flags: Precursor gi|7670030|dbj|BAA94984.1| pectinesterase-like protein [Arabidopsis thaliana] gi|21553361|gb|AAM62454.1| pectinesterase, putative [Arabidopsis thaliana] gi|26451762|dbj|BAC42976.1| putative pectinesterase [Arabidopsis thaliana] gi|28973561|gb|AAO64105.1| putative pectinesterase [Arabidopsis thaliana] gi|332642378|gb|AEE75899.1| putative pectinesterase 67 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147827142|emb|CAN70978.1| hypothetical protein VITISV_034766 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.993 0.912 0.707 2.1e-125
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.952 0.739 0.436 7.4e-66
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.962 0.793 0.412 3e-62
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.892 0.801 0.418 3.1e-60
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.917 0.801 0.394 3.6e-57
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.914 0.867 0.411 3.6e-57
TAIR|locus:2093736335 AT3G24130 [Arabidopsis thalian 0.911 0.859 0.404 7.5e-57
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.920 0.765 0.384 5.3e-56
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.965 0.776 0.378 9.9e-55
TAIR|locus:2179659330 AT5G18990 [Arabidopsis thalian 0.911 0.872 0.397 1.3e-54
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 222/314 (70%), Positives = 260/314 (82%)

Query:     3 KKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREK 62
             +KT FDAPLLTEK+ TNR+I VDI G GD+ S+Q AI+AVP GN NWII+HVRKG+Y+E+
Sbjct:    27 QKTKFDAPLLTEKIATNRSIIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKER 86

Query:    63 VYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVA 122
             V+IPE+KP+IFMRGNGKGKT I  SQS+ +N  SATF VEA HF+AFGIS +N+AP G+A
Sbjct:    87 VHIPENKPFIFMRGNGKGKTVIESSQSSVDNVASATFKVEANHFVAFGISIRNDAPVGMA 146

Query:   123 FTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIF 182
             FTS+NQSVAAFV AD  AFYHCAFYS HNTLFD KGRHYYH CYIQGSIDFIFGR  SIF
Sbjct:   147 FTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIF 206

Query:   183 QNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVF 242
              NCEIFVI DKRVK +GSITA +RE   + +G+VFI GKVYG  +VYLGRAKG YSRV+F
Sbjct:   207 NNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKVYGIDEVYLGRAKGPYSRVIF 266

Query:   243 AKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMS 302
             AKTYLS+T+VP GWTNWSY GST NL+  EY+CHGPGAE + R  W+K L+ QE E F+S
Sbjct:   267 AKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWAKDLTKQEVESFLS 326

Query:   303 IDFVDGKNWLPAWV 316
             IDF+DG +WLP W+
Sbjct:   327 IDFIDGTSWLPVWL 340
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093736 AT3G24130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179659 AT5G18990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSP1PME67_ARATH3, ., 1, ., 1, ., 1, 10.70700.99360.9127yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VIII.2247.1
pectinesterase family protein (EC-3.1.1.11) (309 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-102
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-97
PLN02432293 PLN02432, PLN02432, putative pectinesterase 7e-94
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 4e-90
PLN02634359 PLN02634, PLN02634, probable pectinesterase 7e-83
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-81
PLN02304379 PLN02304, PLN02304, probable pectinesterase 6e-79
PLN02773317 PLN02773, PLN02773, pectinesterase 4e-78
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-72
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 8e-72
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-59
PLN02314586 PLN02314, PLN02314, pectinesterase 6e-58
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-56
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-56
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 3e-53
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 3e-52
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 3e-52
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 3e-51
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-50
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 4e-50
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 5e-50
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 5e-50
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 2e-49
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 6e-49
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 2e-47
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 7e-47
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 8e-47
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 4e-46
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-44
PLN02197588 PLN02197, PLN02197, pectinesterase 4e-42
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 7e-37
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 2e-35
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-13
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information 
 Score =  608 bits (1570), Expect = 0.0
 Identities = 247/315 (78%), Positives = 283/315 (89%), Gaps = 1/315 (0%)

Query: 1   LTKKTVFDAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYR 60
              +TV D+PLLTEK+ TNRTI VDING GDF S+Q AI+AVP GN  WII+H+RKGVYR
Sbjct: 29  KKSQTVVDSPLLTEKIGTNRTIIVDINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR 88

Query: 61  EKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTG 120
           EKV+IPE+KP+IFMRGNGKG+T+IVWSQS+++N  SATF+VEAPHF+AFGIS +N+APTG
Sbjct: 89  EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVEAPHFVAFGISIRNDAPTG 148

Query: 121 VAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRS 180
           +AFTS+NQSVAAFVGAD  AFYHCAFYSTHNTLFDYKGRHYYH+CYIQGSIDFIFGRGRS
Sbjct: 149 MAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRGRS 208

Query: 181 IFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRV 240
           IF NCEIFVI D+RVKI+GSITA NRE   DNSGFVFI+GKVYG G+VYLGRAKGAYSRV
Sbjct: 209 IFHNCEIFVIADRRVKIYGSITAHNRESE-DNSGFVFIKGKVYGIGEVYLGRAKGAYSRV 267

Query: 241 VFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKF 300
           +FAKTYLS+TIVP GWTNWSY GST+NL+QAEY+CHGPGAE  +RVPWSKQL+ +EAE F
Sbjct: 268 IFAKTYLSKTIVPAGWTNWSYTGSTENLYQAEYKCHGPGAETTNRVPWSKQLTQEEAESF 327

Query: 301 MSIDFVDGKNWLPAW 315
           +SIDF+DGK WLP W
Sbjct: 328 LSIDFIDGKEWLPVW 342

Length = 343
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PLN02480343 Probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.55
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.01
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.95
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.75
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.41
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.24
KOG1777 625 consensus Putative Zn-finger protein [General func 97.47
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.15
PLN02480343 Probable pectinesterase 97.11
PLN02682369 pectinesterase family protein 97.11
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.11
PLN02671359 pectinesterase 97.08
PLN02773317 pectinesterase 97.05
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.05
PLN02793443 Probable polygalacturonase 96.89
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.88
PRK10531422 acyl-CoA thioesterase; Provisional 96.85
PLN02665366 pectinesterase family protein 96.85
PLN02432293 putative pectinesterase 96.83
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.82
PLN02218431 polygalacturonase ADPG 96.8
PLN03003456 Probable polygalacturonase At3g15720 96.78
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.72
PLN02497331 probable pectinesterase 96.65
PLN02916502 pectinesterase family protein 96.63
smart00656190 Amb_all Amb_all domain. 96.61
PLN02176340 putative pectinesterase 96.57
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.55
PLN02634359 probable pectinesterase 96.52
PLN02304379 probable pectinesterase 96.51
PLN03010409 polygalacturonase 96.48
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.42
PLN02197588 pectinesterase 96.4
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.33
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 96.31
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 96.27
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.25
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.19
PLN02301548 pectinesterase/pectinesterase inhibitor 96.18
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.15
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.13
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.98
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.96
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.88
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.83
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.77
PLN02314586 pectinesterase 95.69
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.68
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.61
PLN02155394 polygalacturonase 95.54
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.52
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.26
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.87
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 94.76
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.34
PLN02188404 polygalacturonase/glycoside hydrolase family prote 93.12
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.48
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 92.27
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.98
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 91.7
PLN02218431 polygalacturonase ADPG 88.2
PLN02793443 Probable polygalacturonase 86.06
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 84.5
PLN02155394 polygalacturonase 84.38
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 80.9
PLN03003456 Probable polygalacturonase At3g15720 80.86
>PLN02480 Probable pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-94  Score=685.99  Aligned_cols=308  Identities=80%  Similarity=1.381  Sum_probs=286.1

Q ss_pred             cccccccccCCCceEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEeCceEeeEEEecCCCCeEEEecCCCCceEEEcC
Q 046043            8 DAPLLTEKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWS   87 (316)
Q Consensus         8 ~~~~~~~~~~~~~~i~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tvI~~~   87 (316)
                      +.|++........+++|+++|+|+|+|||+|||++|+++.+|++|+|+||+|+|+|+|+++||+|+|+|++++.|+|+++
T Consensus        36 ~~~~~~~~~~~~~~~~Va~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~E~V~I~~~kp~ItL~G~g~~~TvI~~~  115 (343)
T PLN02480         36 DSPLLTEKIGTNRTIIVDINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYREKVHIPENKPFIFMRGNGKGRTSIVWS  115 (343)
T ss_pred             cccccccccCcccEEEECCCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEEEEEEECCCCceEEEEecCCCCeEEEcc
Confidence            44555544556689999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeEEEEEcCcEEEEcceEEecCCCCCccCCCCceEEEEEecCceEEEEEEEeeccceeEeCCccEEEEceEE
Q 046043           88 QSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYI  167 (316)
Q Consensus        88 ~~~~~~~~satv~v~a~~~~~~~lti~Nt~~~~~~~~~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I  167 (316)
                      ..+..+..++||.|.+++|+++||||+|+++.+.......||+||++.+||++|++|+|+|||||||++.|||||++|+|
T Consensus       116 ~~~~~~~~saTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~I  195 (343)
T PLN02480        116 QSSSDNAASATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYI  195 (343)
T ss_pred             ccccCCCCceEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEE
Confidence            87766778999999999999999999999876544445689999999999999999999999999999999999999999


Q ss_pred             ecceeeEeccceeEEEeeEEEEecCCCCccceEEEeCCCCCCCCCceEEEEecEEEecCcEEEcccCCCcceEEEEeccc
Q 046043          168 QGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDVYLGRAKGAYSRVVFAKTYL  247 (316)
Q Consensus       168 ~G~vDfIfG~g~a~fe~c~i~~~~~~~~~~~g~ItA~~~~~~~~~~G~vf~~c~~~~~~~~~LGRpW~~~~~~v~~~t~~  247 (316)
                      ||+||||||+|+++||+|+|+++.+....+.|+||||+|.+ .+++||||.+|+|++.+++||||||++|+||||++|+|
T Consensus       196 eG~VDFIFG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~-~~~~GfvF~~C~i~g~g~~yLGRPW~~ya~vVf~~t~l  274 (343)
T PLN02480        196 QGSIDFIFGRGRSIFHNCEIFVIADRRVKIYGSITAHNRES-EDNSGFVFIKGKVYGIGEVYLGRAKGAYSRVIFAKTYL  274 (343)
T ss_pred             EeeeeEEccceeEEEEccEEEEecCCCCCCceEEEcCCCCC-CCCCEEEEECCEEcccCceeeecCCCCcceEEEEeccc
Confidence            99999999999999999999998653334579999999985 78899999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcceEEEEecccCCCCCCCCceecccCCCHHHHhcccccceecCCCCccCCC
Q 046043          248 SRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVDGKNWLPAWV  316 (316)
Q Consensus       248 ~~~i~~~gw~~w~~~~~~~~~~f~Ey~~~G~ga~~~~r~~~~~~lt~~ea~~~~~~~~~~g~~W~p~~~  316 (316)
                      +++|.|+||.+|+.....++++|+||+|+|||+++++|++|+++|+++||++|+.++||+|++|+|.+|
T Consensus       275 ~~~I~p~GW~~w~~~~~~~t~~faEy~~~GpGa~~~~Rv~w~~~Lt~~ea~~ft~~~fi~g~~W~p~~~  343 (343)
T PLN02480        275 SKTIVPAGWTNWSYTGSTENLYQAEYKCHGPGAETTNRVPWSKQLTQEEAESFLSIDFIDGKEWLPVWL  343 (343)
T ss_pred             CCeEcCcccCCCCCCCCCCceEEEEEcccCCCCCccCCccccccCCHHHHHhhhHhhccCCCCcCcccC
Confidence            999999999999986677899999999999999999999999999999999999999999999999987

>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-42
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-33
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 4e-14
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 4e-14
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-13
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-13
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 21/308 (6%)
Query: 22  IKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGK 81
           + V  +G GD+K++ +A+ A P+ +    +I ++ GVYRE V +P+ K  I   G+G+  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 82  TAIVWS---QSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADM 138
           T I  S   Q  +   +SAT +     F+A  I+F+N A       +++Q+VA  VG+D+
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDL 123
Query: 139 NAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIH 198
           +AFY C   +  ++L+ +  R ++ NC+I G++DFIFG    + Q+C+I        +  
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQ-K 182
Query: 199 GSITAQNREDNTDNSGFVFIEGKVYGTGDV---------YLGRAKGAYSRVVFAKTYLSR 249
             +TAQ R D   N+G V  + ++  T D+         YLGR    YSR V  ++ ++ 
Sbjct: 183 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITN 242
Query: 250 TIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSK---QLSDQEAEKFMSIDFV 306
            I P GW  W    + D L+  EY+  G GA    RV W       S  EA+ F    F+
Sbjct: 243 VINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFI 302
Query: 307 DGKNWLPA 314
            G +WL A
Sbjct: 303 AGGSWLKA 310
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-126
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-123
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-103
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-102
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 9e-79
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  362 bits (932), Expect = e-126
 Identities = 99/316 (31%), Positives = 157/316 (49%), Gaps = 21/316 (6%)

Query: 14  EKLNTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIF 73
           E       + V  +G GD+K++ +A+ A P+ +    +I ++ GVYRE V +P+ K  I 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 74  MRGNGKGKTAIVWSQSATNNK---DSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSV 130
             G+G+  T I  S++  +     +SAT +     F+A  I+F+N A        ++Q+V
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAA-----KHQAV 115

Query: 131 AAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVI 190
           A  VG+D++AFY C   +  ++L+ +  R ++ NC+I G++DFIFG    + Q+C+I   
Sbjct: 116 ALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHAR 175

Query: 191 DDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGD---------VYLGRAKGAYSRVV 241
                     +TAQ R D   N+G V  + ++  T D          YLGR    YSR V
Sbjct: 176 RPGS-GQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTV 234

Query: 242 FAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWS---KQLSDQEAE 298
             ++ ++  I P GW  W    + D L+  EY+  G GA    RV W       S  EA+
Sbjct: 235 VMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQ 294

Query: 299 KFMSIDFVDGKNWLPA 314
            F    F+ G +WL A
Sbjct: 295 GFTPGSFIAGGSWLKA 310
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.7
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.52
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.98
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.36
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.27
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.98
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.8
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.74
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.68
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.67
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.65
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.64
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.62
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.61
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.6
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.56
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.52
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.5
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.48
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.44
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.15
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.91
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.84
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.78
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.74
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.68
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.57
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.48
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.35
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.33
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.3
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.26
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.96
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 95.79
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.77
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.12
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 94.97
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.51
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 90.59
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 89.37
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 89.2
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.5
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 88.49
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 87.85
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 87.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 84.45
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 81.28
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 80.54
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=8.8e-86  Score=623.36  Aligned_cols=291  Identities=33%  Similarity=0.644  Sum_probs=271.0

Q ss_pred             CCceEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEeCceEeeEEEecCCCCeEEEecCCCCceEEEcCCCCCC---CC
Q 046043           18 TNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATN---NK   94 (316)
Q Consensus        18 ~~~~i~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tvI~~~~~~~~---~~   94 (316)
                      .+.+++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|+|++.||+|+|+|++++.|+|+++....+   +.
T Consensus         5 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   84 (319)
T 1gq8_A            5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             ccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCcc
Confidence            567899999999999999999999999999999999999999999999988999999999999999999886433   45


Q ss_pred             CeeEEEEEcCcEEEEcceEEecCCCCCccCCCCceEEEEEecCceEEEEEEEeeccceeEeCCccEEEEceEEecceeeE
Q 046043           95 DSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFI  174 (316)
Q Consensus        95 ~satv~v~a~~~~~~~lti~Nt~~~~~~~~~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfI  174 (316)
                      .++||.|.+++|+++||||+|+++.     ..+||+||++.+|++.|++|+|+|+|||||++.+||||++|+|+|+||||
T Consensus        85 ~satv~v~a~~f~~~nlt~~Nt~g~-----~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFI  159 (319)
T 1gq8_A           85 NSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             ceEEEEEECCCEEEEEeEeEccCCC-----cCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeeeeEE
Confidence            7899999999999999999999873     46899999999999999999999999999999999999999999999999


Q ss_pred             eccceeEEEeeEEEEecCCCCccceEEEeCCCCCCCCCceEEEEecEEEecC---------cEEEcccCCCcceEEEEec
Q 046043          175 FGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTG---------DVYLGRAKGAYSRVVFAKT  245 (316)
Q Consensus       175 fG~g~a~fe~c~i~~~~~~~~~~~g~ItA~~~~~~~~~~G~vf~~c~~~~~~---------~~~LGRpW~~~~~~v~~~t  245 (316)
                      ||+++++||+|+|+++++. ..+.++||||+|.++++++||||.+|+|++++         ++||||||++++|+||++|
T Consensus       160 fG~~~a~f~~c~i~~~~~~-~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t  238 (319)
T 1gq8_A          160 FGNAAVVLQDCDIHARRPG-SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQS  238 (319)
T ss_dssp             EESCEEEEESCEEEECCCS-TTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESC
T ss_pred             ecCCcEEEEeeEEEEecCC-CCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEEEec
Confidence            9999999999999998753 23568999999987889999999999999875         6899999999999999999


Q ss_pred             ccCCcccCCCCCCCCCCCCCcceEEEEecccCCCCCCCCceeccc--CC-CHHHHhcccccceecCCCCccC
Q 046043          246 YLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSK--QL-SDQEAEKFMSIDFVDGKNWLPA  314 (316)
Q Consensus       246 ~~~~~i~~~gw~~w~~~~~~~~~~f~Ey~~~G~ga~~~~r~~~~~--~l-t~~ea~~~~~~~~~~g~~W~p~  314 (316)
                      +|+++|.|+||.+|++..+.++++|+||+|+|||+++++|++|++  +| +++||++|+..+||+|++|+|.
T Consensus       239 ~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~  310 (319)
T 1gq8_A          239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA  310 (319)
T ss_dssp             EECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGG
T ss_pred             cCCCcccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCC
Confidence            999999999999999877788999999999999999999999996  56 5689999999999999999985
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-104
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-73
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 9e-04
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.003
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  305 bits (782), Expect = e-104
 Identities = 98/313 (31%), Positives = 158/313 (50%), Gaps = 21/313 (6%)

Query: 17  NTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRG 76
                + V  +G GD+K++ +A+ A P+ +    +I ++ GVYRE V +P+ K  I   G
Sbjct: 4   TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLG 63

Query: 77  NGKGKTAIVWSQSATNNK---DSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAF 133
           +G+  T I  S++  +     +SAT +     F+A  I+F+N A       +++Q+VA  
Sbjct: 64  DGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALR 118

Query: 134 VGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDK 193
           VG+D++AFY C   +  ++L+ +  R ++ NC+I G++DFIFG    + Q+C+I      
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPG 178

Query: 194 RVKIHGSITAQNREDNTDNSGFVFIEGKVYGTGDV---------YLGRAKGAYSRVVFAK 244
                  +TAQ R D   N+G V  + ++  T D+         YLGR    YSR V  +
Sbjct: 179 S-GQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ 237

Query: 245 TYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWS---KQLSDQEAEKFM 301
           + ++  I P GW  W    + D L+  EY+  G GA    RV W       S  EA+ F 
Sbjct: 238 SSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFT 297

Query: 302 SIDFVDGKNWLPA 314
              F+ G +WL A
Sbjct: 298 PGSFIAGGSWLKA 310
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.23
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.92
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.64
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.59
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.52
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.16
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.83
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.73
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.64
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.5
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.3
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.25
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.1
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.06
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.88
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.83
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.47
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 93.17
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 92.28
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 91.69
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 91.16
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 88.51
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 88.07
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 85.09
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 83.92
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 82.33
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=4e-91  Score=655.63  Aligned_cols=292  Identities=33%  Similarity=0.637  Sum_probs=273.7

Q ss_pred             CCCceEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEeCceEeeEEEecCCCCeEEEecCCCCceEEEcCCCCCC---C
Q 046043           17 NTNRTIKVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATN---N   93 (316)
Q Consensus        17 ~~~~~i~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tvI~~~~~~~~---~   93 (316)
                      ..+.+++|++||+|||+|||+||+++|+++++|++|+|+||+|+|+|+||++||+|+|+|++++.|+|+++....+   +
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            3567799999999999999999999999999999999999999999999999999999999999999999977544   5


Q ss_pred             CCeeEEEEEcCcEEEEcceEEecCCCCCccCCCCceEEEEEecCceEEEEEEEeeccceeEeCCccEEEEceEEecceee
Q 046043           94 KDSATFSVEAPHFIAFGISFKNEAPTGVAFTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDF  173 (316)
Q Consensus        94 ~~satv~v~a~~~~~~~lti~Nt~~~~~~~~~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDf  173 (316)
                      ..++||.+.+++|+++||||+|+++.     .++||+||++++||++|++|+|+|+|||||++.|||||++|+|+|+|||
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~-----~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDF  158 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDF  158 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCC-----CCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccE
Confidence            67899999999999999999999973     4689999999999999999999999999999999999999999999999


Q ss_pred             EeccceeEEEeeEEEEecCCCCccceEEEeCCCCCCCCCceEEEEecEEEecC---------cEEEcccCCCcceEEEEe
Q 046043          174 IFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKVYGTG---------DVYLGRAKGAYSRVVFAK  244 (316)
Q Consensus       174 IfG~g~a~fe~c~i~~~~~~~~~~~g~ItA~~~~~~~~~~G~vf~~c~~~~~~---------~~~LGRpW~~~~~~v~~~  244 (316)
                      |||+++++||+|+|+++++. ....++||||+|.++.+++||||.+|+|++++         ++||||||++++||||++
T Consensus       159 IfG~~~a~f~~c~i~~~~~~-~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~  237 (319)
T d1gq8a_         159 IFGNAAVVLQDCDIHARRPG-SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ  237 (319)
T ss_dssp             EEESCEEEEESCEEEECCCS-TTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEES
T ss_pred             EecCceeEeecceeeeecCC-CCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEe
Confidence            99999999999999998763 34668999999987788999999999999875         579999999999999999


Q ss_pred             cccCCcccCCCCCCCCCCCCCcceEEEEecccCCCCCCCCceecc---cCCCHHHHhcccccceecCCCCccC
Q 046043          245 TYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWS---KQLSDQEAEKFMSIDFVDGKNWLPA  314 (316)
Q Consensus       245 t~~~~~i~~~gw~~w~~~~~~~~~~f~Ey~~~G~ga~~~~r~~~~---~~lt~~ea~~~~~~~~~~g~~W~p~  314 (316)
                      |+|+++|.|+||.+|+...+.++++|+||+|+|||+++++|++|+   ++|+++||++|+.++||+|++|+|.
T Consensus       238 t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~  310 (319)
T d1gq8a_         238 SSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA  310 (319)
T ss_dssp             CEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGG
T ss_pred             cccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCccccc
Confidence            999999999999999987788899999999999999999999997   4899999999999999999999984
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure