BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046044
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 254 bits (648), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 185/307 (60%), Gaps = 10/307 (3%)
Query: 26 LREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLL-SSPNN 84
L+ FY ++CP ESLV+ AV F AP +R+ FHDCFVRGCDASVLL S+ NN
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 85 RAEKDH-PEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
AEKD P + SL GF+ + AK AV++ C VSCADILA A RD +LAG Y
Sbjct: 62 TAEKDAIPNNPSL--RGFEVITAAKSAVEA--ACPQTVSCADILAFAARDSANLAGNITY 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCS 203
+V GRRDG +S + ++P P FN QL F++ L +M+ LSGAH+IG +HCS
Sbjct: 118 QVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCS 177
Query: 204 RFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCP---VRVDPRIAIDMDPTTPRIFDNAYYK 260
F+ R+YNF+ + IDPTL+ +YA LR CP R P I + +D TP + DN YY
Sbjct: 178 SFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTP-ITVSLDIITPSVLDNMYYT 236
Query: 261 NLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIR 320
+Q GL TSDQ L ++ V A N A+ F A+ K+G++ V TG QGEIR
Sbjct: 237 GVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIR 296
Query: 321 RDCALVN 327
+C++VN
Sbjct: 297 TNCSVVN 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/308 (43%), Positives = 185/308 (60%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +DMD TP IFDN YY NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNL 238
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/308 (43%), Positives = 185/308 (60%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LPQP F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 179 RSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 299 RLNCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 298 RLNCRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 298 RLNCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 298 RLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG H+ G + C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQC 177
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 298 RLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 183/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL FHDCFV GCDAS+LL + +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++AL G HT G + C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQC 177
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 298 RLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 183/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + LRL F DCFV GCDAS+LL + +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 299 RLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 182/308 (59%), Gaps = 8/308 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY ++CPNV ++VR + + A + L L F DCFV GCDAS+LL + +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
R EKD + + + GF + + K AV+S C VSCAD+L +A + V+LAGGP +
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVES--ACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQT-DMIALSGAHTIGFSHC 202
+V LGRRD + + LP P F L QL F + GL+++ D++ALSG HT G + C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
R+YNFS DPTLN Y LRG+CP+ + +D D TP IFDN YY NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 263 QQGKGLFTSDQILFSDGRSRDTV--VR-FASNKEAFNRAFISAITKLGRVGVKTGNQGEI 319
++ KGL SDQ LFS + DT+ VR FA++ + F AF+ A+ ++G + TG QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RRDCALVN 327
R +C +VN
Sbjct: 298 RLNCRVVN 305
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 230 bits (586), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 173/306 (56%), Gaps = 6/306 (1%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL FY TCPN ++VRS + + + +RL FHDCFV GCDAS+LL +
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 85 -RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
++EK+ +++ A GF+ V K A+++ C VSC+D+LALA+ VSLAGGP +
Sbjct: 62 IQSEKNAGPNVNSA-RGFNVVDNIKTALEN--ACPGVVSCSDVLALASEASVSLAGGPSW 118
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCS 203
V LGRRD + +A +P P +L + FS+ GL+ D++ALSGAHT G + C
Sbjct: 119 TVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCG 178
Query: 204 RFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ 263
F+ R++NFS DPTLN L+ +CP ++D +TP FDN Y+ NLQ
Sbjct: 179 VFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQ 238
Query: 264 QGKGLFTSDQILFSDGRSRD--TVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRR 321
GL SDQ LFS S V FASN+ F +AF ++ +G + TG+ GEIR
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 322 DCALVN 327
DC VN
Sbjct: 299 DCKKVN 304
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 180/302 (59%), Gaps = 11/302 (3%)
Query: 29 DFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLL-SSPNNRAE 87
DFY TCP ES+VR V + + A LRL FHDCFV+GCDASVLL S E
Sbjct: 12 DFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGE 71
Query: 88 KDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKV-SCADILALATRDVVSLAGGPFYKVE 146
+ P +++L F V ++ ++ +CR V SC+DILALA RD V ++GGP Y+V
Sbjct: 72 QQAPPNLTLRPSAFKAVNDIRDRLER--ECRGAVVSCSDILALAARDSVVVSGGPDYRVP 129
Query: 147 LGRRDGR-ISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRF 205
LGRRD R ++ V LP P N+ L + GLD TD++ +SG HTIG +HCS F
Sbjct: 130 LGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSF 189
Query: 206 SKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQG 265
R++ R DPT++ + +L+ CP + R + +D TP +FDN YY +L
Sbjct: 190 EDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLVNR 243
Query: 266 KGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRRDCAL 325
+GLF SDQ LF++ +R V RFA +++ F F +I K+G++ V+T +QGE+RR+C++
Sbjct: 244 EGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSV 303
Query: 326 VN 327
N
Sbjct: 304 RN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 170/306 (55%), Gaps = 4/306 (1%)
Query: 24 AQLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPN 83
L FY TCPN ++VR+ V + F + +RL FHDCFV GCDAS+LL +
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 84 NRAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFY 143
+ + + + + GF+ V K A+++ C VSC D+LALA++ VSL+GGP +
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALEN--ACPGVVSCTDVLALASQASVSLSGGPSW 119
Query: 144 KVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCS 203
V+LGRRD + A +P P L + FS+ GL+ D++ALSGAHT G + C
Sbjct: 120 TVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCG 179
Query: 204 RFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ 263
FS R++NFS + DPTLN L+ +CP + + ++D +TP FDN Y+ NLQ
Sbjct: 180 VFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQ 239
Query: 264 QGKGLFTSDQILFSDGRSRD--TVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRR 321
GL SDQ LFS S V FASN+ F +AF ++ +G + TG+ GEIR
Sbjct: 240 SNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRL 299
Query: 322 DCALVN 327
DC N
Sbjct: 300 DCKKTN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 167/303 (55%), Gaps = 11/303 (3%)
Query: 26 LREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNNR 85
L +FY + CPN S ++SAV + + LRL FHDCFV+GCDASVLL +N
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
+ + + GF+ + K V+S C VSCADILA+A RD V GG + V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVES--LCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRF 205
LGRRD ++++S LP P FNL L FS+ G +++ LSGAHTIG + C+ F
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAF 179
Query: 206 SKRIYNFSPRNRIDPTLNFNYAMQLRGMCP-VRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
RIYN S IDPT YA L+ CP V D ++ D TTP FDNAYY NL+
Sbjct: 180 RTRIYNES---NIDPT----YAKSLQANCPSVGGDTNLS-PFDVTTPNKFDNAYYINLRN 231
Query: 265 GKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRRDCA 324
KGL SDQ LF+ + V +++N FN F +A+ K+G + TG G+IR +C
Sbjct: 232 KKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCR 291
Query: 325 LVN 327
N
Sbjct: 292 KTN 294
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 177/307 (57%), Gaps = 12/307 (3%)
Query: 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84
QL D Y +CPN+ +VR V A + +RL FHDCFV GCDAS+LL +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD- 59
Query: 85 RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYK 144
+EK +I+ A GF+ + K AV++ C VSCADIL LA RD V L+GGP ++
Sbjct: 60 -SEKLAIPNINSA-RGFEVIDTIKAAVEN--ACPGVVSCADILTLAARDSVVLSGGPGWR 115
Query: 145 VELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSR 204
V LGR+DG ++ S + LP P LD + F + L+ TD++ALSGAHT G + C+
Sbjct: 116 VALGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAV 174
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
FS R++NF+ D TL + L+ +CP+ + I +D +T FDN Y+KNL +
Sbjct: 175 FSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLE 234
Query: 265 GKGLFTSDQILFSDGRSRDT----VVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIR 320
GKGL +SDQILFS + +T V ++ ++ F R F A+ ++G + G GE+R
Sbjct: 235 GKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGN--ISNGASGEVR 292
Query: 321 RDCALVN 327
+C ++N
Sbjct: 293 TNCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 170/307 (55%), Gaps = 8/307 (2%)
Query: 25 QLREDFYRSTCPNVESLVRSAV-TKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPN 83
QL FYR TCPN+ +V + FT + A + +RL FHDCFV+GCD SVLL++ +
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGA-SLMRLHFHDCFVQGCDGSVLLNNTD 59
Query: 84 N-RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPF 142
+E+D +I+ + G D V K AV++ C + VSCADILA+A L GGP
Sbjct: 60 TIESEQDALPNIN-SIRGLDVVNDIKTAVEN--SCPDTVSCADILAIAAEIASVLGGGPG 116
Query: 143 YKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHC 202
+ V LGRRD + LP P FNL QL F+ GL+ D++ LSG HT G + C
Sbjct: 117 WPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARC 176
Query: 203 SRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNL 262
S F R+YNFS DPTLN Y LR CP ++D +TP FDN YY NL
Sbjct: 177 STFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNL 236
Query: 263 QQGKGLFTSDQILFS--DGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIR 320
Q GL SDQ LFS + V F+SN+ F F ++ K+G +GV TG++GEIR
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIR 296
Query: 321 RDCALVN 327
C VN
Sbjct: 297 LQCNFVN 303
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 33/277 (11%)
Query: 42 VRSAVTKKFTQTFVTAPATLRLFFH-----DCFVRGCDASVLLSSPNNRAEKDHPEDISL 96
+R+ + ++ P+ +RL +H DCF + SPN+ + + PE +
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKD-------GSPNSASMRFKPECLYA 64
Query: 97 AGDGFDTVVKAKEAVDSD-PQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRIS 155
G D KA E + PQ +S AD+ LA + GGP GR D +
Sbjct: 65 GNKGLDIPRKALETLKKKYPQ----ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDG 120
Query: 156 TIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPR 215
++ +LP + +F G + + +AL GAHT G +H FS P
Sbjct: 121 SVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHI-EFSGY---HGPW 176
Query: 216 NRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQIL 275
+ ++ QL +D ++ ++ D A K + + SD L
Sbjct: 177 THDKNGFDNSFFTQL-------LDEDWVLNPKVEQMQLMDRATTKLM-----MLPSDVCL 224
Query: 276 FSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVK 312
D R V +A + + FN+ F +A KL +G +
Sbjct: 225 LLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTR 261
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 33/277 (11%)
Query: 42 VRSAVTKKFTQTFVTAPATLRLFFH-----DCFVRGCDASVLLSSPNNRAEKDHPEDISL 96
+R+ + ++ P+ +RL +H DCF + SPN+ + + PE +
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKD-------GSPNSASMRFKPECLYA 63
Query: 97 AGDGFDTVVKAKEAVDSD-PQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRIS 155
G D KA E + PQ +S AD+ LA + GGP GR D +
Sbjct: 64 GNKGLDIPRKALETLKKKYPQ----ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDG 119
Query: 156 TIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPR 215
++ +LP + +F G + + +AL GAHT G H FS P
Sbjct: 120 SVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHI-EFSGY---HGPW 175
Query: 216 NRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQIL 275
+ ++ QL +D ++ ++ D A K + + SD L
Sbjct: 176 THDKNGFDNSFFTQL-------LDEDWVLNPKVEQMQLMDRATTKLM-----MLPSDVCL 223
Query: 276 FSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVK 312
D R V +A + + FN+ F +A KL +G +
Sbjct: 224 LLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTR 260
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 33/277 (11%)
Query: 42 VRSAVTKKFTQTFVTAPATLRLFFH-----DCFVRGCDASVLLSSPNNRAEKDHPEDISL 96
+R+ + ++ P+ +RL +H DCF + SPN+ + + PE +
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKD-------GSPNSASMRFKPECLYA 64
Query: 97 AGDGFDTVVKAKEAVDSD-PQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRIS 155
G D KA E + PQ +S AD+ LA + GGP GR D +
Sbjct: 65 GNKGLDIPRKALETLKKKYPQ----ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDG 120
Query: 156 TIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPR 215
++ +LP + +F G + + +AL GAHT G H FS P
Sbjct: 121 SVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHI-EFSGY---HGPW 176
Query: 216 NRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQIL 275
+ ++ QL +D ++ ++ D A K + + SD L
Sbjct: 177 THDKNGFDNSFFTQL-------LDEDWVLNPKVEQMQLMDRATTKLM-----MLPSDVCL 224
Query: 276 FSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVK 312
D R V +A + + FN+ F +A KL +G +
Sbjct: 225 LLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTR 261
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 116/296 (39%), Gaps = 60/296 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL +H F +G + +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHP 74
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 75 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 127 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 183
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 184 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 207
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQ 316
G +GL SD+ L SD R V ++A++++AF + A KL +G ++
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFADAHE 263
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 114/290 (39%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL +H F +G + +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHP 74
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 75 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 127 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 183
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 184 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 207
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 114/290 (39%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL +H F +G + +
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHP 62
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 63 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 115 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 171
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 172 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 195
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 115/292 (39%), Gaps = 64/292 (21%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL +H F +G + +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHP 74
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 75 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H
Sbjct: 127 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--- 180
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTT--PRIFDNAYYKNL 262
K F P T P IFDN+Y+ L
Sbjct: 181 --KEASGFE---------------------------------GPWTSNPLIFDNSYFTEL 205
Query: 263 QQG--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 206 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 114/290 (39%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP L+L +H F +G + +
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKHP 62
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 63 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 115 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 171
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 172 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 195
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 113/290 (38%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL H F +G + +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKHP 74
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 75 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 127 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 183
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 184 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 207
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 113/290 (38%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP L L +H F +G + +
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLALAWHSAGTFDKGTKTGGPFGTIKHP 62
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 63 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 115 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 171
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 172 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 195
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQ--PDFNLDQLNRMF 178
V+ AD+ LA+ + AGGP ++ GR D + +LP P L +F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 179 SSHGLDQTDMIALSGAHTIGFSHCSR--FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPV 236
GL+ +++ALSGAHT+G S R + K ++ P A L+
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLK----- 201
Query: 237 RVDPRIAIDMDPTTPRIFDNAYYKNLQQGKG----LFTSDQILFSDGRSRDTVVRFASNK 292
FDN+Y+K++++ + + +D LF D + ++A++
Sbjct: 202 -----------------FDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADP 244
Query: 293 EAFNRAFISAITKLGRVGVKTG 314
EAF + + A KL +G K G
Sbjct: 245 EAFFKDYAEAHAKLSNLGAKFG 266
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 108/289 (37%), Gaps = 56/289 (19%)
Query: 31 YRSTCPNVESLVRSAVTK--KFTQTFVTAPATLRLFFHDC--FVRGCDASVLLSSPNNRA 86
Y + P+ + + A K F AP LRL +H F + ++A
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQA 63
Query: 87 EKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVE 146
E H A +G D V+ E + + VS AD LA V + GGP
Sbjct: 64 ELAHG-----ANNGLDIAVRLLEPIK---EQFPIVSYADFYQLAGVVAVEITGGPEVPFH 115
Query: 147 LGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSRF 205
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 116 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKER- 171
Query: 206 SKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQG 265
F + P IFDN+Y+ L G
Sbjct: 172 ----------------SGFEGPWT-------------------SNPLIFDNSYFTELLTG 196
Query: 266 K--GL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
+ GL SD+ L +D R V ++A++++ F + A KL +G
Sbjct: 197 EKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 113/290 (38%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDC--FVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL + F +G + +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWASAGTFDKGTKTGGPFGTIKHP 74
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 75 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 127 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 183
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 184 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 207
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 113/290 (38%), Gaps = 60/290 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRL--FFHDCFVRGCDASVLLSSPNNR 85
+ P V + + AV KK + F+ AP LRL + F +G + +
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPFGTIKHP 62
Query: 86 AEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKV 145
AE H A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 63 AELAHS-----ANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 146 ELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSR 204
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 115 HPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER 171
Query: 205 FSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQ 264
F + P IFDN+Y+ L
Sbjct: 172 -----------------SGFEGPWT-------------------SNPLIFDNSYFTELLS 195
Query: 265 G--KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
G +GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 113/289 (39%), Gaps = 58/289 (20%)
Query: 34 TCPNVESLVRSAV--TKKFTQTFVT----APATLRLFFHDCFVRGCDASVLLSSPNNRAE 87
+ P V + + AV KK + F+ AP LRL C D P +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRL--AACSAGTFDKGTKTGGPFGTIK 72
Query: 88 KDHPEDISL-AGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVE 146
HP +++ A +G D V+ E + ++ +S AD LA V + GGP
Sbjct: 73 --HPAELAHSANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 147 LGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSRF 205
GR D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 128 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER- 183
Query: 206 SKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQG 265
F + P IFDN+Y+ L G
Sbjct: 184 ----------------SGFEGPWT-------------------SNPLIFDNSYFTELLSG 208
Query: 266 --KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
+GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 209 EKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 48/227 (21%)
Query: 90 HPEDISL-AGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELG 148
HP +++ A +G D V+ E + ++ +S AD LA V + GGP G
Sbjct: 73 HPAELAHSANNGLDIAVRLLEPLKAEFPI---LSYADFYQLAGVVAVEVTGGPEVPFHPG 129
Query: 149 RRDGRISTIASVQHKLPQPDFNLDQLNRMFS-SHGLDQTDMIALSGAHTIGFSHCSRFSK 207
R D + +LP D L +F + GL D++ALSG HTIG +H R
Sbjct: 130 RED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--- 183
Query: 208 RIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQG-- 265
F + P IFDN+Y+ L G
Sbjct: 184 --------------SGFEGPWT-------------------SNPLIFDNSYFTELLSGEK 210
Query: 266 KGL--FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
+GL SD+ L SD R V ++A++++AF + A KL +G
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 73/210 (34%), Gaps = 56/210 (26%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAHT+G +H N Y P
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK-------------------NSGYE-----------GP 190
Query: 241 RIAIDMDPTTPRIFDNAYYKNL-------------------QQGKGLFTSDQILFSDGRS 281
A P +FDN++Y NL + G + +D L D +
Sbjct: 191 WTA------NPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 244
Query: 282 RDTVVRFASNKEAFNRAFISAITKLGRVGV 311
V +A++++ F + F A KL G+
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 72/210 (34%), Gaps = 56/210 (26%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAHT+G +H N D T N
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK-------NSGYEGPWDATNN----------------- 196
Query: 241 RIAIDMDPTTPRIFDNAYYKNL-------------------QQGKGLFTSDQILFSDGRS 281
+FDN++Y NL + G + +D L D +
Sbjct: 197 ------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 244
Query: 282 RDTVVRFASNKEAFNRAFISAITKLGRVGV 311
V +A++++ F + F A KL G+
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++ALSGAHT+G +H
Sbjct: 161 LNMNDREVVALSGAHTLGKTHL 182
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H R P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKRSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 NWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H R P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKRSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 NWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 28/196 (14%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPT-----LNFNYAMQLRGMCP 235
++ +++AL GAHT+G +H + N D + LN ++ ++
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANN 220
Query: 236 VRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAF 295
+ D + M PT D L D + V +A++++ F
Sbjct: 221 EQWDSKSGYMMLPT----------------------DYSLIQDPKYLSIVKEYANDQDKF 258
Query: 296 NRAFISAITKLGRVGV 311
+ F A KL G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H R P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKRSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H R P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKRSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLENGI 271
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 105/282 (37%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ F +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSKMALLG 269
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 153
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H R P + + + L ++
Sbjct: 154 LNMNDREVVALMGAHALGKTHLKRSGYE----GPFGAANNVFTNEFYLNL-------LNE 202
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 203 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 256
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 257 KAFEKLLENGI 267
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSR 204
++ +++AL GAH +G +H R
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKR 184
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 159
Query: 181 HGLDQTDMIALSGAHTIGFSHCSR 204
++ +++AL GAH +G +H R
Sbjct: 160 LNMNDREVVALMGAHALGKTHLKR 183
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAHT+G +H
Sbjct: 161 LNMNDREVVALMGAHTLGKTHL 182
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPQ 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 100 GFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVS-LAGGPFYKVELGRRDGRISTIA 158
G D VV ++ + ++ V+ D +A A VS G P + LGR + +T A
Sbjct: 87 GLDEVVAIQKPFIA----KHGVTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPE---ATQA 139
Query: 159 SVQHKLPQPDFNLDQ-LNRMFSSHGLDQTDMIALSGAHTI 197
+ +P+P +DQ L RM + G D+ + + L AH+I
Sbjct: 140 APDGLVPEPFHTIDQVLARMLDAGGFDEIETVXLLSAHSI 179
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 105/282 (37%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP++FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPQVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPF- 91
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 92 ---VAKHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 105/282 (37%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G ++++L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVSLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 NWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 24/194 (12%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASV---QHKLPQPDFNLDQLNRM 177
+S D+ +L V GP ++ R GR+ T +LP D + D +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGP----KIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 178 FSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVR 237
F ++ +++AL GAH +G +H P + + + L
Sbjct: 158 FQRLNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNCFTNEFYLNL------- 206
Query: 238 VDPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNR 297
++ ++ + +D+ + G + +D L D + V +A++++ F +
Sbjct: 207 LNEDWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 298 AFISAITKLGRVGV 311
F A KL G+
Sbjct: 261 DFSKAFEKLLENGI 274
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 159
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 160 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 208
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 209 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 262
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 263 KAFEKLLENGI 273
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLEDGI 274
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 100/282 (35%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I +
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------------------- 174
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
+VDP I +TP +FD+ ++ Q QG+
Sbjct: 175 -------AKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVYLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + Y + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEYYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLENGI 271
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPGPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPGPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + +++DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DKVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P+P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPEPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + + +DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DGVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P+ + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPQGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P+ + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPQGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLEDGI 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALKGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLENGI 271
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 84/282 (29%)
Query: 60 TLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112
+LRL FHD G D S++ + E + P A G D +V A++
Sbjct: 41 SLRLTFHDAIGFSPTLGGGGADGSIIAF---DTIETNFP-----ANAGIDEIVSAQKPFV 92
Query: 113 SDPQCRNKVSCADILALATRDVVSLAGG----PFYKVELGRRDGRISTIASVQHKLPQPD 168
+ ++ +S D + A VS G PF+ LGR D + AS H +P P
Sbjct: 93 A----KHNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPD---AVAASPDHLVPGPF 142
Query: 169 FNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAM 228
++D + G +++ L +H+I + + +DP++
Sbjct: 143 DSVDSILARMGDAGFSPVEVVWLLASHSIAAA---------------DGVDPSI------ 181
Query: 229 QLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ--------------------QGKGL 268
P D +TP +FD+ ++ Q QG+
Sbjct: 182 -----------PGTPFD---STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIR 227
Query: 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310
SD +L D ++ +N+ F + ++K+ +G
Sbjct: 228 LQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLG 269
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 163
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 164 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 212
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 213 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 266
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 267 KAFEKLLENGI 277
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASV---QHKLPQPDFNLDQLNRM 177
+S D+ +L V GP ++ R GR+ T +LP D + +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGP----KIPWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTF 159
Query: 178 FSSHGLDQTDMIALSGAHTIGFSHC 202
F ++ +++AL GAH +G +H
Sbjct: 160 FQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLENGI 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLEDGI 271
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLEDGI 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPYGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLEDGI 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDYDKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPGGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYE----GPGGAANNVFTNEFYLNL-------LNE 211
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 212 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 266 KAFEKLLENGI 276
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDMDKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLENGI 274
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 163
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 164 LNMNDREVVALMGAHALGKTHL 185
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 163
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 164 LNMNDREVVALMGAHALGKTHL 185
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 163 LNMNDREVVALMGAHALGKTHL 184
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 158 LNMNDREVVALMGAHALGKTHL 179
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKNSGYE----GPGGAANNVFTNEFYLNL-------LNE 209
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 210 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 264 KAFEKLLEDGI 274
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 161 LNMNDREVVALMGAHALGKTHL 182
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 162
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 163 LNMNDREVVALMGAHALGKTHL 184
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYE----GPGGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLEDGI 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 163
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 164 LNMNDREVVALMGAHALGKTHL 185
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 158
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G +H P + + + L ++
Sbjct: 159 LNMNDREVVALMGAHALGKTHLKNSGYE----GPGGAANNVFTNEFYLNL-------LNE 207
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 208 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 261
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 262 KAFEKLLEDGI 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 160
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 161 LNMNDREVVALMGAHALGKTHL 182
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 158 LNMNDREVVALMGAHALGKTHL 179
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 158 LNMNDREVVALMGAHALGKTHL 179
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 158
Query: 181 HGLDQTDMIALSGAHTIGFSHC 202
++ +++AL GAH +G +H
Sbjct: 159 LNMNDREVVALMGAHALGKTHL 180
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 135 VSLAGGPFYKVELGRRDGRISTIAS-----------VQHKLPQPDFNLDQLNRMFSSHGL 183
++ A +Y E+G +ST+A +H + F++D L + G
Sbjct: 44 INYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVFEHYINNNLFDIDSLVKFIEELGY 103
Query: 184 DQTDMIALSGAHTIGFSHCSRFSKR 208
+ D+ L AH +G+ KR
Sbjct: 104 NLEDLATLCLAHLLGYKKLEEPLKR 128
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 184 DQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNY--AMQLRGM---CPVRV 238
D TD+I L A + +R R+ +F+ PTL F + QL + C + +
Sbjct: 120 DNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWI 179
Query: 239 DPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFS-DGRSRDTVVRFASNKEAFNR 297
+ +D+ R+ D+ ++ ++ G S LF D + + + + K F R
Sbjct: 180 QD-LCMDLQ-NLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 237
Query: 298 AFI 300
AFI
Sbjct: 238 AFI 240
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GAH +G + P + + + L ++
Sbjct: 158 LNMNDREVVALMGAHALGKTELKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLENGI 271
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 184 DQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNY--AMQLRGM---CPVRV 238
D TD+I L A + +R R+ +F+ PTL F + QL + C + +
Sbjct: 120 DNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWI 179
Query: 239 DPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFS-DGRSRDTVVRFASNKEAFNR 297
+ +D+ R+ D+ ++ ++ G S LF D + + + + K F R
Sbjct: 180 QD-LCMDLQ-NLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 237
Query: 298 AFI 300
AFI
Sbjct: 238 AFI 240
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 184 DQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNY--AMQLRGM---CPVRV 238
D TD+I L A + +R R+ +F+ PTL F + QL + C + +
Sbjct: 139 DNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWI 198
Query: 239 DPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFS-DGRSRDTVVRFASNKEAFNR 297
+ +D+ R+ D+ ++ ++ G S LF D + + + + K F R
Sbjct: 199 QD-LCMDLQ-NLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 256
Query: 298 AFI 300
AFI
Sbjct: 257 AFI 259
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 184 DQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNY--AMQLRGM---CPVRV 238
D TD+I L A + +R R+ +F+ PTL F + QL + C + +
Sbjct: 139 DNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWI 198
Query: 239 DPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFS-DGRSRDTVVRFASNKEAFNR 297
+ +D+ R+ D+ ++ ++ G S LF D + + + + K F R
Sbjct: 199 QD-LCMDLQ-NLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 256
Query: 298 AFI 300
AFI
Sbjct: 257 AFI 259
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 158
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GA +G +H P + + + L ++
Sbjct: 159 LNMNDREVVALMGAGALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 207
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 208 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 261
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 262 KAFEKLLENGI 272
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 157
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GA +G +H P + + + L ++
Sbjct: 158 LNMNDREVVALMGAGALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 206
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 207 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 261 KAFEKLLENGI 271
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 18/191 (9%)
Query: 121 VSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSS 180
+S D+ +L V GP GR D T +LP D + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQR 158
Query: 181 HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDP 240
++ +++AL GA +G +H P + + + L ++
Sbjct: 159 LNMNDREVVALMGAGALGKTHLKNSGYE----GPWGAANNVFTNEFYLNL-------LNE 207
Query: 241 RIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFI 300
++ + +D+ + G + +D L D + V +A++++ F + F
Sbjct: 208 DWKLEKNDANNEQWDS------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 261
Query: 301 SAITKLGRVGV 311
A KL G+
Sbjct: 262 KAFEKLLENGI 272
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIU|E Chain E, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIV|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|E Chain E, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|H Chain H, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|K Chain K, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
Length = 254
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 84 NRAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAG 139
++ K PE SL + D + KE +S +C+N + IL AT VVS+
Sbjct: 37 DKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTA 92
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
pdb|2OZB|E Chain E, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
Length = 260
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 84 NRAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSL 137
++ K PE SL + D + KE +S +C+N + IL AT VVS+
Sbjct: 43 DKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSV 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,755,269
Number of Sequences: 62578
Number of extensions: 345501
Number of successful extensions: 906
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 137
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)