Query 046044
Match_columns 327
No_of_seqs 170 out of 1412
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-106 3E-111 772.1 24.7 315 6-327 4-324 (324)
2 cd00693 secretory_peroxidase H 100.0 4E-100 9E-105 725.4 24.0 297 25-326 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.6E-71 3.5E-76 512.6 9.8 228 42-291 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 7.1E-69 1.5E-73 506.3 20.6 232 40-324 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.3E-65 2.8E-70 478.8 18.9 230 37-313 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.5E-64 3.3E-69 470.1 19.5 231 29-312 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 4.4E-64 9.6E-69 481.4 20.0 236 38-327 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2.8E-63 6.1E-68 461.1 19.8 218 41-312 19-248 (251)
9 cd00314 plant_peroxidase_like 100.0 8.9E-59 1.9E-63 433.4 17.5 224 41-308 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 9.5E-58 2.1E-62 444.5 18.6 273 26-317 29-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.1E-54 2.3E-59 447.0 18.9 269 26-313 39-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.5E-51 3.3E-56 421.6 19.3 270 26-314 41-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2E-49 4.4E-54 368.3 11.9 219 42-308 27-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.5E-41 5.5E-46 317.7 16.6 224 43-310 16-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3E-36 6.6E-41 310.7 16.2 216 46-311 437-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.8E-36 1.5E-40 306.6 16.9 223 44-311 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 2E-32 4.4E-37 269.9 15.3 251 41-310 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.7 8.6E-16 1.9E-20 152.8 14.3 217 44-310 452-725 (730)
19 PF07172 GRP: Glycine rich pro 75.5 2.5 5.4E-05 34.1 2.6 18 1-18 1-18 (95)
20 COG3763 Uncharacterized protei 68.5 12 0.00026 28.6 4.6 50 6-69 3-52 (71)
21 PTZ00411 transaldolase-like pr 61.3 78 0.0017 31.2 10.1 49 137-185 179-230 (333)
22 PF11895 DUF3415: Domain of un 47.9 16 0.00034 28.6 2.3 18 294-311 2-19 (80)
23 PRK01844 hypothetical protein; 37.1 80 0.0017 24.3 4.6 49 7-69 4-52 (72)
24 PRK00523 hypothetical protein; 30.5 1.2E+02 0.0025 23.4 4.6 29 41-69 25-53 (72)
25 PF15240 Pro-rich: Proline-ric 28.7 41 0.0009 30.2 2.2 12 7-18 2-13 (179)
26 PF06387 Calcyon: D1 dopamine 24.2 47 0.001 29.8 1.7 10 30-39 108-117 (186)
27 KOG3803 Transcription factor c 22.3 53 0.0012 35.1 1.9 35 33-80 670-704 (968)
28 PHA03156 hypothetical protein; 21.9 1E+02 0.0022 24.6 3.0 11 27-37 36-46 (90)
29 TIGR00874 talAB transaldolase. 21.3 4.9E+02 0.011 25.5 8.2 52 137-188 167-221 (317)
30 KOG0400 40S ribosomal protein 21.0 62 0.0013 27.8 1.7 32 170-201 32-64 (151)
31 PF00043 GST_C: Glutathione S- 20.1 2.1E+02 0.0045 21.3 4.5 24 116-139 50-73 (95)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.4e-106 Score=772.14 Aligned_cols=315 Identities=39% Similarity=0.709 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHhhh-ccccCCcchhhcCCccHHHHHHHHHHHHHhhCCCchhhHHHHhhhccccccCCCceecCCCCC
Q 046044 6 FFIILSSVVFSLIMTG-ASAQLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPNN 84 (327)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~l~~~fY~~tCp~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~v~GcDgSill~~~~~ 84 (327)
.++++++++++..++. +.++|+++||++|||++|+||++.|++.+.+||+++|++|||+||||||+||||||||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~-- 81 (324)
T PLN03030 4 FIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS-- 81 (324)
T ss_pred ehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC--
Confidence 3444444444444333 3466999999999999999999999999999999999999999999999999999999964
Q ss_pred ccccCCcCCCCCcccchhHHHHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCC
Q 046044 85 RAEKDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKL 164 (327)
Q Consensus 85 ~~E~~~~~N~~L~~~~~~~i~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~l 164 (327)
..|+++++|.+| +||++|+.||+++|+ +||++||||||||+|||+||+++|||.|+|++||||+++|...++ .+|
T Consensus 82 ~~Ek~a~~N~~l--~Gf~~i~~iK~~~e~--~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~-~~L 156 (324)
T PLN03030 82 NTEKTALPNLLL--RGYDVIDDAKTQLEA--ACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDA-SNL 156 (324)
T ss_pred cccccCCCCcCc--chHHHHHHHHHHHHh--hCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccc-cCC
Confidence 379999999999 999999999999999 999999999999999999999999999999999999999987766 489
Q ss_pred CCCCCCHHHHHHHHHhCCCCccCceeeccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHhcCCCCCCCCCcc
Q 046044 165 PQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRN-RIDPTLNFNYAMQLRGMCPVRVDPRIA 243 (327)
Q Consensus 165 P~p~~~~~~l~~~F~~~Gls~~elVaLsGaHTiG~~hc~~f~~Rl~~f~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~ 243 (327)
|.|+.+++++++.|+++||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+..|+..||..++++..
T Consensus 157 P~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~ 236 (324)
T PLN03030 157 PGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRR 236 (324)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999875 589999999999999999964333346
Q ss_pred ccCCCCCCccccHHHHHHhhcCccccccccccccCcchHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 046044 244 IDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDGRSRDTVVRFASNK----EAFNRAFISAITKLGRVGVKTGNQGEI 319 (327)
Q Consensus 244 ~~lD~~Tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~Gei 319 (327)
+++|+.||.+|||+||+||+.++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||
T Consensus 237 ~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEI 316 (324)
T PLN03030 237 IALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEI 316 (324)
T ss_pred ccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCce
Confidence 7899999999999999999999999999999999999999999999875 599999999999999999999999999
Q ss_pred cccCccCC
Q 046044 320 RRDCALVN 327 (327)
Q Consensus 320 R~~C~~~n 327 (327)
||+|+++|
T Consensus 317 Rk~C~~vN 324 (324)
T PLN03030 317 RKVCSAIN 324 (324)
T ss_pred eccccccC
Confidence 99999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.3e-100 Score=725.43 Aligned_cols=297 Identities=56% Similarity=0.915 Sum_probs=286.9
Q ss_pred cCCcchhhcCCccHHHHHHHHHHHHHhhCCCchhhHHHHhhhccccccCCCceecCCCC-CccccCCcCCCCCcccchhH
Q 046044 25 QLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSPN-NRAEKDHPEDISLAGDGFDT 103 (327)
Q Consensus 25 ~l~~~fY~~tCp~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~v~GcDgSill~~~~-~~~E~~~~~N~~L~~~~~~~ 103 (327)
+|+++||++|||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++. +..|+++++|.+| +||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l--~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSL--RGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCc--chhHH
Confidence 58999999999999999999999999999999999999999999999999999999875 6789999999999 99999
Q ss_pred HHHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhCCC
Q 046044 104 VVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGL 183 (327)
Q Consensus 104 i~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 183 (327)
|+.||+++|+ .||++||||||||||||+||+++|||.|+|++||+|+.++.+.++ +.||.|+.+++++++.|+++||
T Consensus 79 i~~iK~~~e~--~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~ 155 (298)
T cd00693 79 IDDIKAALEA--ACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGL 155 (298)
T ss_pred HHHHHHHHHh--hCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCC
Confidence 9999999999 999999999999999999999999999999999999998876655 7899999999999999999999
Q ss_pred CccCceeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhh
Q 046044 184 DQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQ 263 (327)
Q Consensus 184 s~~elVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~ 263 (327)
+++|||||+||||||++||.+|.+|||||+|++++||+||+.|+..|++.||+.++++..+++|+.||.+|||+||+||+
T Consensus 156 ~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 156 TVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred CHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999998655566789999999999999999999
Q ss_pred cCccccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCccC
Q 046044 264 QGKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRRDCALV 326 (327)
Q Consensus 264 ~~~gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 326 (327)
.++|+|+||++|+.|++|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|++|
T Consensus 236 ~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 236 AGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.6e-71 Score=512.64 Aligned_cols=228 Identities=50% Similarity=0.843 Sum_probs=209.9
Q ss_pred HHHHHHHHHhhCCCchhhHHHHhhhcccc-ccCCCceecCCCCCccccCCcCCCCCccc-chhHHHHHHHHcccCCCCCC
Q 046044 42 VRSAVTKKFTQTFVTAPATLRLFFHDCFV-RGCDASVLLSSPNNRAEKDHPEDISLAGD-GFDTVVKAKEAVDSDPQCRN 119 (327)
Q Consensus 42 V~~~v~~~~~~d~~~aa~lLRL~FHDc~v-~GcDgSill~~~~~~~E~~~~~N~~L~~~-~~~~i~~iK~~le~~~~cp~ 119 (327)
||+.|++.+.++++++|+||||+|||||+ +|||||||+. ..|+++++|.+| + ++++|+.||+++|+ +||+
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~----~~e~~~~~N~gl--~~~~~~i~~ik~~~~~--~cp~ 72 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF----SAEKDAPPNRGL--RDGFDVIDPIKAKLEA--ACPG 72 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS----TTGGGSGGGTTH--HHHHHHHHHHHHHHCH--HSTT
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc----ccccccccccCc--ceeeechhhHHhhhcc--cccC
Confidence 79999999999999999999999999999 9999999984 379999999999 6 99999999999999 9999
Q ss_pred CcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhCCCCccCceeecccccccc
Q 046044 120 KVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSGAHTIGF 199 (327)
Q Consensus 120 ~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLsGaHTiG~ 199 (327)
+|||||||+|||++||+.+|||.|+|++||+|+.++++.++ .+||.|+.+++++++.|+++|||++|||||+||||||+
T Consensus 73 ~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~ 151 (230)
T PF00141_consen 73 VVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGR 151 (230)
T ss_dssp TS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTE
T ss_pred CCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccc
Confidence 99999999999999999999999999999999999998777 78999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhhcCccccccccccccCc
Q 046044 200 SHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKGLFTSDQILFSDG 279 (327)
Q Consensus 200 ~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~ 279 (327)
+||.+|. ||| + .+||+||+.|+.. .| ..++++ .+++| ||.+|||+||+++++++|+|+||++|+.|+
T Consensus 152 ~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~ 218 (230)
T PF00141_consen 152 AHCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP 218 (230)
T ss_dssp ESGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST
T ss_pred ceecccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH
Confidence 9999999 999 4 5799999999988 99 433333 77888 999999999999999999999999999999
Q ss_pred chHHHHHHHhhC
Q 046044 280 RSRDTVVRFASN 291 (327)
Q Consensus 280 ~t~~~V~~yA~d 291 (327)
+|+++|++||+|
T Consensus 219 ~t~~~V~~yA~d 230 (230)
T PF00141_consen 219 ETRPIVERYAQD 230 (230)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=7.1e-69 Score=506.34 Aligned_cols=232 Identities=28% Similarity=0.445 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHhhCCCchhhHHHHhhhccc-------cccCCCceecCCCCCccccCCcCCCCCcccchhHHHHHHHHcc
Q 046044 40 SLVRSAVTKKFTQTFVTAPATLRLFFHDCF-------VRGCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112 (327)
Q Consensus 40 ~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~-------v~GcDgSill~~~~~~~E~~~~~N~~L~~~~~~~i~~iK~~le 112 (327)
+-+++++ ..+.+||.++|.+|||+||||| ++||||||+++ +|+++++|.+|. +++++|+.||+++.
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~-----~E~~~~~N~gL~-~g~~vid~iK~~~~ 87 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE-----EEYSHGANNGLK-IAIDLCEPVKAKHP 87 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc-----cccCCccccchH-HHHHHHHHHHHHcC
Confidence 3456666 4577899999999999999999 89999999984 699999999992 48999999999762
Q ss_pred cCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhCCCCccCceeec
Q 046044 113 SDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALS 192 (327)
Q Consensus 113 ~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLs 192 (327)
+|||||||+||||+||+++|||.|+|++||+|+.+++ ++++||+|+.+++++++.|+++|||++|||||+
T Consensus 88 -------~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLs 157 (289)
T PLN02608 88 -------KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALS 157 (289)
T ss_pred -------CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhc
Confidence 6999999999999999999999999999999999985 346899999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhhcC--ccc--
Q 046044 193 GAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQG--KGL-- 268 (327)
Q Consensus 193 GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl-- 268 (327)
||||||++||. |+ +|.| | +..||.+|||+||++++.+ +|+
T Consensus 158 GAHTiG~ahc~----r~-g~~g--------------------~-----------~~~Tp~~FDN~Yy~~ll~~~~~gll~ 201 (289)
T PLN02608 158 GGHTLGRAHPE----RS-GFDG--------------------P-----------WTKEPLKFDNSYFVELLKGESEGLLK 201 (289)
T ss_pred ccccccccccc----CC-CCCC--------------------C-----------CCCCCCccChHHHHHHHcCCcCCccc
Confidence 99999999995 54 3322 0 1268999999999999999 788
Q ss_pred cccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCc
Q 046044 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRRDCA 324 (327)
Q Consensus 269 l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 324 (327)
|+||++|+.|++|+++|++||.|++.|+++|++||+||++|+|+||++||+.+.-+
T Consensus 202 L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 202 LPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred cccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 79999999999999999999999999999999999999999999999999987643
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.3e-65 Score=478.77 Aligned_cols=230 Identities=26% Similarity=0.367 Sum_probs=207.1
Q ss_pred cHHHHHHHHHHHHHhhCCCchhhHHHHhhhccccccCCCceecCCC---C-CccccCCcCCCCCcccchhHHHHHHHHcc
Q 046044 37 NVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLSSP---N-NRAEKDHPEDISLAGDGFDTVVKAKEAVD 112 (327)
Q Consensus 37 ~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~v~GcDgSill~~~---~-~~~E~~~~~N~~L~~~~~~~i~~iK~~le 112 (327)
..++||++.|++.+. +++++|++|||+|||||+ ||+|+++++. . +.+|+++++|.+| .+++++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L-~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGL-DIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccch-HHHHHHHHHHHHHc-
Confidence 457899999999999 999999999999999994 7777766432 2 3579999999999 36999999999855
Q ss_pred cCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhCCCCccCceeec
Q 046044 113 SDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALS 192 (327)
Q Consensus 113 ~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLs 192 (327)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++|||++|||||+
T Consensus 86 -----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLs 159 (253)
T cd00691 86 -----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALS 159 (253)
T ss_pred -----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhc
Confidence 3 6999999999999999999999999999999999998777778899999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhhcCcc-----
Q 046044 193 GAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKG----- 267 (327)
Q Consensus 193 GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g----- 267 (327)
||||||++||.. ++|.|. |..||.+|||+||+||+.++|
T Consensus 160 GaHTiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~ 203 (253)
T cd00691 160 GAHTLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTP 203 (253)
T ss_pred ccceeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcC
Confidence 999999999953 233221 125899999999999999999
Q ss_pred ---ccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCC
Q 046044 268 ---LFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKT 313 (327)
Q Consensus 268 ---ll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t 313 (327)
+|+||++|+.|++|+++|++||.|++.|+++|++||+||++|+|..
T Consensus 204 ~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 204 GLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred cceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999864
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.5e-64 Score=470.13 Aligned_cols=231 Identities=30% Similarity=0.464 Sum_probs=206.0
Q ss_pred chhh--cCCccHHHHHHHHHHHHHhhCCCchhhHHHHhhh-----ccccc--cCCCceecCCCCCccccCCcCCCCCccc
Q 046044 29 DFYR--STCPNVESLVRSAVTKKFTQTFVTAPATLRLFFH-----DCFVR--GCDASVLLSSPNNRAEKDHPEDISLAGD 99 (327)
Q Consensus 29 ~fY~--~tCp~~e~iV~~~v~~~~~~d~~~aa~lLRL~FH-----Dc~v~--GcDgSill~~~~~~~E~~~~~N~~L~~~ 99 (327)
.||. +-|+.+++.+++.+++.+ .|++++|.+|||+|| ||+++ ||||||.. .+|+++++|.+| .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~-----~~E~~~~~N~gl-~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF-----DAEQAHGANSGI-HI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc-----cccccCCCccCH-HH
Confidence 4564 347888899999999977 889999999999999 88876 99999964 379999999998 36
Q ss_pred chhHHHHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHH
Q 046044 100 GFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFS 179 (327)
Q Consensus 100 ~~~~i~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~ 179 (327)
+|++|+.||+++. +|||||||+||||+||+++|||.|+|++||+|++++++ +++||.|+.++++|++.|+
T Consensus 77 ~~~~i~~ik~~~~-------~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~ 146 (250)
T PLN02364 77 ALRLLDPIREQFP-------TISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFA 146 (250)
T ss_pred HHHHHHHHHHHcC-------CcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHH
Confidence 9999999999773 59999999999999999999999999999999999864 4679999999999999999
Q ss_pred h-CCCCccCceeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHH
Q 046044 180 S-HGLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAY 258 (327)
Q Consensus 180 ~-~Gls~~elVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Y 258 (327)
+ +|||++|||||+||||||++|| .|+ +|.|. . ..||.+|||+|
T Consensus 147 ~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~-~~tp~~fDn~Y 190 (250)
T PLN02364 147 KQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA------------------------------W-TSNPLIFDNSY 190 (250)
T ss_pred HhcCCCHHHheeeecceeeccccC----CCC-CCCCC------------------------------C-CCCCCccchHH
Confidence 7 6999999999999999999999 354 33221 1 26899999999
Q ss_pred HHHhhcC--ccccc--cccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 046044 259 YKNLQQG--KGLFT--SDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVK 312 (327)
Q Consensus 259 y~~l~~~--~gll~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 312 (327)
|++|+.+ +|+|. ||++|+.|++|+.+|++||.|++.|+++|++||+||++||+-
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999 89875 999999999999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.4e-64 Score=481.42 Aligned_cols=236 Identities=27% Similarity=0.396 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHhhCC---CchhhHHHHhhhcccc------------ccCCCceecCCCCCccccCCcCCCCCcccchh
Q 046044 38 VESLVRSAVTKKFTQTF---VTAPATLRLFFHDCFV------------RGCDASVLLSSPNNRAEKDHPEDISLAGDGFD 102 (327)
Q Consensus 38 ~e~iV~~~v~~~~~~d~---~~aa~lLRL~FHDc~v------------~GcDgSill~~~~~~~E~~~~~N~~L~~~~~~ 102 (327)
+|..|++.|++.+..+. ..++.+|||+||||++ +|||||||++.+ .|+++++|.+| + +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~---~E~~~~~N~gL--~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD---IETAFHANIGL--D--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc---ccccCCCCCCH--H--H
Confidence 58899999999998554 5788899999999996 899999999853 69999999999 5 9
Q ss_pred HHHHHHHHcccCCCCCCCcchHHHHHHhHHHHHH-hcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhC
Q 046044 103 TVVKAKEAVDSDPQCRNKVSCADILALATRDVVS-LAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSH 181 (327)
Q Consensus 103 ~i~~iK~~le~~~~cp~~VScADilalAa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~ 181 (327)
+|+.||..+|+ .| |||||||+||||+||+ ++|||.|+|++||+|++++. ++++||.|+.++++|++.|+++
T Consensus 89 vvd~lk~~~e~--~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~ 160 (328)
T cd00692 89 IVEALRPFHQK--HN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADA 160 (328)
T ss_pred HHHHHHHHHHh--cC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHc
Confidence 99999999999 88 9999999999999999 57999999999999999986 3468999999999999999999
Q ss_pred CCCccCceeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHH
Q 046044 182 GLDQTDMIALSGAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKN 261 (327)
Q Consensus 182 Gls~~elVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~ 261 (327)
|||++||||||||||||++|. +||+++ .+++| .||.+|||+||+|
T Consensus 161 Gf~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ 205 (328)
T cd00692 161 GFSPDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIE 205 (328)
T ss_pred CCCHHHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHH
Confidence 999999999999999999982 477764 13577 6999999999999
Q ss_pred hh-cCcc-------------------ccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 046044 262 LQ-QGKG-------------------LFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVKTGNQGEIRR 321 (327)
Q Consensus 262 l~-~~~g-------------------ll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~ 321 (327)
++ .+++ +|+||++|+.|++|+.+|++||+||+.|+++|++||+||++|||. +..+.
T Consensus 206 ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~ 281 (328)
T cd00692 206 TLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLT 281 (328)
T ss_pred HHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhc
Confidence 87 5555 499999999999999999999999999999999999999999886 44788
Q ss_pred cCccCC
Q 046044 322 DCALVN 327 (327)
Q Consensus 322 ~C~~~n 327 (327)
+|+.|+
T Consensus 282 dcs~v~ 287 (328)
T cd00692 282 DCSDVI 287 (328)
T ss_pred cCcccC
Confidence 999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.8e-63 Score=461.07 Aligned_cols=218 Identities=30% Similarity=0.440 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHhhhcccc-------ccCCCceecCCCCCccccCCcCCCCCccc-chhHHHHHHHHcc
Q 046044 41 LVRSAVTKKFTQTFVTAPATLRLFFHDCFV-------RGCDASVLLSSPNNRAEKDHPEDISLAGD-GFDTVVKAKEAVD 112 (327)
Q Consensus 41 iV~~~v~~~~~~d~~~aa~lLRL~FHDc~v-------~GcDgSill~~~~~~~E~~~~~N~~L~~~-~~~~i~~iK~~le 112 (327)
-+++.+.+.+ ++...+|.+|||+||||.+ |||||||++. .|+++++|.|| + ++++|+.||+++.
T Consensus 19 ~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~-----~E~~~~~N~gL--~~~~~~i~~iK~~~~ 90 (251)
T PLN02879 19 RCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP-----QELAHDANNGL--DIAVRLLDPIKELFP 90 (251)
T ss_pred HHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh-----hhccCCCcCCh--HHHHHHHHHHHHHcC
Confidence 3466677765 5679999999999999974 8999999863 79999999999 5 9999999999773
Q ss_pred cCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhCCCCccCceeec
Q 046044 113 SDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALS 192 (327)
Q Consensus 113 ~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLs 192 (327)
+|||||||+|||++||+++|||.|+|++||+|+.++. ++++||.|+.+++++++.|+++|||++||||||
T Consensus 91 -------~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs 160 (251)
T PLN02879 91 -------ILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALS 160 (251)
T ss_pred -------CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeee
Confidence 5999999999999999999999999999999999885 456899999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhhcC--ccc--
Q 046044 193 GAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQG--KGL-- 268 (327)
Q Consensus 193 GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl-- 268 (327)
||||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+
T Consensus 161 GaHTiG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~ 204 (251)
T PLN02879 161 GGHTLGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQ 204 (251)
T ss_pred ccccccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCcc
Confidence 99999999995 4 344321 22 68999999999999999 888
Q ss_pred cccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 046044 269 FTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVGVK 312 (327)
Q Consensus 269 l~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 312 (327)
|+||++|+.|++|+++|++||.||+.|+++|++||+||++||+.
T Consensus 205 L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 205 LPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred chhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 67999999999999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=8.9e-59 Score=433.39 Aligned_cols=224 Identities=34% Similarity=0.485 Sum_probs=205.8
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHhhhccccc--------cCCCceecCCCCCccccCCcCCCCCcccchhHHHHHHHHcc
Q 046044 41 LVRSAVTKKFTQTFVTAPATLRLFFHDCFVR--------GCDASVLLSSPNNRAEKDHPEDISLAGDGFDTVVKAKEAVD 112 (327)
Q Consensus 41 iV~~~v~~~~~~d~~~aa~lLRL~FHDc~v~--------GcDgSill~~~~~~~E~~~~~N~~L~~~~~~~i~~iK~~le 112 (327)
.|+..|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| .+++++|+.||+++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~-----~e~~~~~N~~l-~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE-----PELDRPENGGL-DKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc-----ccccCcccccH-HHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999996 999999997 49999999986 379999999999998
Q ss_pred cCCCCCCCcchHHHHHHhHHHHHHhc--CCCceeeeccccCCCCCc--cccccCCCCCCCCCHHHHHHHHHhCCCCccCc
Q 046044 113 SDPQCRNKVSCADILALATRDVVSLA--GGPFYKVELGRRDGRIST--IASVQHKLPQPDFNLDQLNRMFSSHGLDQTDM 188 (327)
Q Consensus 113 ~~~~cp~~VScADilalAa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~el 188 (327)
. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...|...+|.|..+++++++.|.++||+++||
T Consensus 76 ~----~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~ 151 (255)
T cd00314 76 G----GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSEL 151 (255)
T ss_pred C----CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHH
Confidence 5 889999999999999999999 999999999999999764 33455678889999999999999999999999
Q ss_pred eeec-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhhcCc
Q 046044 189 IALS-GAHTI-GFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGK 266 (327)
Q Consensus 189 VaLs-GaHTi-G~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~ 266 (327)
|||+ ||||| |++||..|..|+ | .+|+.||.+|||+||++++.++
T Consensus 152 VAL~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~ 197 (255)
T cd00314 152 VALSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMN 197 (255)
T ss_pred HhhccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCC
Confidence 9999 99999 999998877664 1 1346899999999999999998
Q ss_pred ----------------cccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 046044 267 ----------------GLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGR 308 (327)
Q Consensus 267 ----------------gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 308 (327)
++|+||++|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 198 ~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 198 WEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=9.5e-58 Score=444.49 Aligned_cols=273 Identities=22% Similarity=0.295 Sum_probs=236.0
Q ss_pred CCcch-hhcCCccHH-HHHHHHHHHHHhhC--------CCchhhHHHHhhhcccc-------ccCC-CceecCCCCCccc
Q 046044 26 LREDF-YRSTCPNVE-SLVRSAVTKKFTQT--------FVTAPATLRLFFHDCFV-------RGCD-ASVLLSSPNNRAE 87 (327)
Q Consensus 26 l~~~f-Y~~tCp~~e-~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDc~v-------~GcD-gSill~~~~~~~E 87 (327)
+-.+| |.+.+-++. +.|++.|++.+... ...+|.+|||+||++.+ ||++ |+|.+. +|
T Consensus 29 ~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~-----pe 103 (409)
T cd00649 29 MGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA-----PL 103 (409)
T ss_pred CCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc-----cc
Confidence 44555 665555544 67899999988764 47999999999999996 8997 788875 79
Q ss_pred cCCcCCCCCcccchhHHHHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccc---------
Q 046044 88 KDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIA--------- 158 (327)
Q Consensus 88 ~~~~~N~~L~~~~~~~i~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~--------- 158 (327)
++++.|.+| ++++++++.||+++.. .||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 104 ~~~~~N~gL-~~a~~~L~pik~k~~~------~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~ 176 (409)
T cd00649 104 NSWPDNVNL-DKARRLLWPIKQKYGN------KISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEW 176 (409)
T ss_pred cCcHhhhhH-HHHHHHHHHHHHHcCC------CccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhc
Confidence 999999999 4689999999997753 599999999999999999999999999999999765321
Q ss_pred --------------------------cccC--CCCCCCCCHHHHHHHHHhCCCCccCceee-cccccccccccccccccc
Q 046044 159 --------------------------SVQH--KLPQPDFNLDQLNRMFSSHGLDQTDMIAL-SGAHTIGFSHCSRFSKRI 209 (327)
Q Consensus 159 --------------------------~~~~--~lP~p~~~~~~l~~~F~~~Gls~~elVaL-sGaHTiG~~hc~~f~~Rl 209 (327)
.+++ .||+|..++++|++.|.+||||++||||| +||||||++||.+|.+||
T Consensus 177 ~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl 256 (409)
T cd00649 177 LADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV 256 (409)
T ss_pred ccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC
Confidence 1223 79999999999999999999999999999 599999999999999998
Q ss_pred ccCCCCCCCCCCCCHHHHHHHh--cCCCCCCC-CCccccCC---CCCCccccHHHHHHhhc-------------------
Q 046044 210 YNFSPRNRIDPTLNFNYAMQLR--GMCPVRVD-PRIAIDMD---PTTPRIFDNAYYKNLQQ------------------- 264 (327)
Q Consensus 210 ~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~lD---~~Tp~~FDN~Yy~~l~~------------------- 264 (327)
. +||++++.|++.|+ ..||.+.+ ++.++.+| +.||.+|||+||++|+.
T Consensus 257 g-------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~ 329 (409)
T cd00649 257 G-------PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKN 329 (409)
T ss_pred C-------CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccC
Confidence 2 69999999999995 89997533 33345677 57999999999999998
Q ss_pred -----------------CccccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 046044 265 -----------------GKGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKL--GRVGVKTGNQG 317 (327)
Q Consensus 265 -----------------~~gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 317 (327)
++++|+||++|+.|++|+++|++||.|++.||++|++||+|| ..+|+++-.-|
T Consensus 330 ~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 330 AAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred ccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999999999999999999999999999999 58888876555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.1e-54 Score=447.01 Aligned_cols=269 Identities=22% Similarity=0.281 Sum_probs=230.7
Q ss_pred CCcch-hhcCCccHH-HHHHHHHHHHHhhC--------CCchhhHHHHhhhcccc-------ccC-CCceecCCCCCccc
Q 046044 26 LREDF-YRSTCPNVE-SLVRSAVTKKFTQT--------FVTAPATLRLFFHDCFV-------RGC-DASVLLSSPNNRAE 87 (327)
Q Consensus 26 l~~~f-Y~~tCp~~e-~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDc~v-------~Gc-DgSill~~~~~~~E 87 (327)
+-.+| |.+-+-++. +.|++.|++.+... ...+|.+|||+||++.+ ||| .|+|.+. +|
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~-----P~ 113 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA-----PL 113 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc-----cc
Confidence 55556 666664432 46888999988764 47999999999999986 788 4778865 79
Q ss_pred cCCcCCCCCcccchhHHHHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCcc----------
Q 046044 88 KDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTI---------- 157 (327)
Q Consensus 88 ~~~~~N~~L~~~~~~~i~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~---------- 157 (327)
++|+.|.+| ++++.+++.||+ .||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 114 ~sw~~N~~L-dka~~lL~pIk~------kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~ 186 (716)
T TIGR00198 114 NSWPDNVNL-DKARRLLWPIKK------KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEW 186 (716)
T ss_pred cCchhhhhH-HHHHHHHHHHHH------HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccch
Confidence 999999999 468999999998 788899999999999999999999999999999999954320
Q ss_pred ----------------c----------cccCCCCCCCCCHHHHHHHHHhCCCCccCceeec-cccccccccccccccccc
Q 046044 158 ----------------A----------SVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALS-GAHTIGFSHCSRFSKRIY 210 (327)
Q Consensus 158 ----------------~----------~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLs-GaHTiG~~hc~~f~~Rl~ 210 (327)
. +.+..+|+|..++++|++.|++||||++|||||+ ||||||++||.+|.+||
T Consensus 187 l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl- 265 (716)
T TIGR00198 187 LTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI- 265 (716)
T ss_pred hhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-
Confidence 0 1122699999999999999999999999999995 99999999999999998
Q ss_pred cCCCCCCCCCCCCHHHHHHHhcCCCCCC---CCCccccCC---CCCCccccHHHHHHhhcC-------------------
Q 046044 211 NFSPRNRIDPTLNFNYAMQLRGMCPVRV---DPRIAIDMD---PTTPRIFDNAYYKNLQQG------------------- 265 (327)
Q Consensus 211 ~f~g~~~~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~------------------- 265 (327)
++||++++.|++.|+.+||... .++.++.+| +.||.+|||+||+||+.+
T Consensus 266 ------g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~ 339 (716)
T TIGR00198 266 ------GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDA 339 (716)
T ss_pred ------CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccc
Confidence 2799999999999999998632 222245676 679999999999999975
Q ss_pred ---------------ccccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCC
Q 046044 266 ---------------KGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGR--VGVKT 313 (327)
Q Consensus 266 ---------------~gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~t 313 (327)
.++|+||++|..|++++++|++||.|++.|+++|++||+||++ +|++.
T Consensus 340 ~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 340 PEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred ccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 6899999999999999999999999999999999999999994 55543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.5e-51 Score=421.60 Aligned_cols=270 Identities=22% Similarity=0.296 Sum_probs=230.3
Q ss_pred CCcch-hhcCCccHH-HHHHHHHHHHHhhC--------CCchhhHHHHhhhcccc-------ccCC-CceecCCCCCccc
Q 046044 26 LREDF-YRSTCPNVE-SLVRSAVTKKFTQT--------FVTAPATLRLFFHDCFV-------RGCD-ASVLLSSPNNRAE 87 (327)
Q Consensus 26 l~~~f-Y~~tCp~~e-~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDc~v-------~GcD-gSill~~~~~~~E 87 (327)
+-.+| |.+-+-.+. +-|++.|.+.+... ...+|.+|||+||++.+ |||+ |+|.+. +|
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~-----pe 115 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA-----PL 115 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc-----cc
Confidence 55556 666665543 46889999888764 47999999999999996 8996 778764 79
Q ss_pred cCCcCCCCCcccchhHHHHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccc---------
Q 046044 88 KDHPEDISLAGDGFDTVVKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIA--------- 158 (327)
Q Consensus 88 ~~~~~N~~L~~~~~~~i~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~--------- 158 (327)
++++.|.+| ++++.+++.||+++.. .||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 116 ~~w~~N~gL-~ka~~~L~pik~ky~~------~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~ 188 (726)
T PRK15061 116 NSWPDNVNL-DKARRLLWPIKQKYGN------KISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEW 188 (726)
T ss_pred ccchhhhhH-HHHHHHHHHHHHHhCC------CccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccc
Confidence 999999999 4689999999997753 599999999999999999999999999999998654321
Q ss_pred -----------------------------cccCCCCCCCCCHHHHHHHHHhCCCCccCceeec-cccccccccccccccc
Q 046044 159 -----------------------------SVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALS-GAHTIGFSHCSRFSKR 208 (327)
Q Consensus 159 -----------------------------~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLs-GaHTiG~~hc~~f~~R 208 (327)
+-+..+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+|
T Consensus 189 l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~r 268 (726)
T PRK15061 189 LGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASH 268 (726)
T ss_pred cccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccc
Confidence 0122489999999999999999999999999995 9999999999999999
Q ss_pred cccCCCCCCCCCCCCHHHHHHHh--cCCCCCC-CCCccccCC---CCCCccccHHHHHHhhcC-----------------
Q 046044 209 IYNFSPRNRIDPTLNFNYAMQLR--GMCPVRV-DPRIAIDMD---PTTPRIFDNAYYKNLQQG----------------- 265 (327)
Q Consensus 209 l~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~-~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~----------------- 265 (327)
| ++||++++.+++.|. ..||.+. .++.+..+| +.||++|||+||++|+.+
T Consensus 269 l-------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~ 341 (726)
T PRK15061 269 V-------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPK 341 (726)
T ss_pred c-------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCcccccccc
Confidence 8 279999999999985 8999743 233345577 679999999999999985
Q ss_pred -------------------ccccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCCC
Q 046044 266 -------------------KGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGR--VGVKTG 314 (327)
Q Consensus 266 -------------------~gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~tg 314 (327)
.++|+||++|..|++++++|++||.|+++|+++|++||.||++ +|+++-
T Consensus 342 ~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 342 DGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred CccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 5899999999999999999999999999999999999999965 555443
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2e-49 Score=368.26 Aligned_cols=219 Identities=25% Similarity=0.337 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhCCCchhhHHHHhhhccc-------cccCCCceecCCCCCccccC-CcCCCCCcccchhHHHHHHHHccc
Q 046044 42 VRSAVTKKFTQTFVTAPATLRLFFHDCF-------VRGCDASVLLSSPNNRAEKD-HPEDISLAGDGFDTVVKAKEAVDS 113 (327)
Q Consensus 42 V~~~v~~~~~~d~~~aa~lLRL~FHDc~-------v~GcDgSill~~~~~~~E~~-~~~N~~L~~~~~~~i~~iK~~le~ 113 (327)
|...-......++++++++|||+||||| ++||||||+++.. .+|+. .+.|.+| ++|+.|+.
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~--~~En~G~~~n~~l--~~~~~i~~------- 95 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD--RPENIGSGFNTTL--NFFVNFYS------- 95 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC--ChhhccCchhhcc--ccceeecc-------
Confidence 3334344555889999999999999999 8999999999743 35666 4555666 67766543
Q ss_pred CCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccccccCCCCCCCCCHHHHHHHHHhCCCCccCceeecc
Q 046044 114 DPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIASVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALSG 193 (327)
Q Consensus 114 ~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLsG 193 (327)
.+|||||||||||++||+.+|||.|+|++||+|++++.+. .||.|+.++++|++.|+++||+++|||+|||
T Consensus 96 -----~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsg 166 (264)
T cd08201 96 -----PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVA 166 (264)
T ss_pred -----CccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeec
Confidence 2599999999999999999999999999999999988643 4999999999999999999999999999995
Q ss_pred -ccccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccccHHHHHHhhcCcc-----
Q 046044 194 -AHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIFDNAYYKNLQQGKG----- 267 (327)
Q Consensus 194 -aHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g----- 267 (327)
|||||++||..|.+++- |. ..++...++| .||.+|||+||.+++.+..
T Consensus 167 gaHTiG~ahc~~f~~~~~---------~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~ 220 (264)
T cd08201 167 CGHTLGGVHSEDFPEIVP---------PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLV 220 (264)
T ss_pred CCeeeeecccccchhhcC---------Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCcee
Confidence 99999999998877642 10 0001123566 6999999999999998742
Q ss_pred -----ccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 046044 268 -----LFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGR 308 (327)
Q Consensus 268 -----ll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 308 (327)
-+.||..++....-. .++..| |++.|.+..+..|.||.+
T Consensus 221 ~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 221 VGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred ecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 368999998765544 456777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.5e-41 Score=317.74 Aligned_cols=224 Identities=19% Similarity=0.213 Sum_probs=182.4
Q ss_pred HHHHHHHHhhCCCchhhHHHHhhhcccc-------ccCCCc-eecCCCCCccccCCcCCCC--CcccchhHHHHHHHHcc
Q 046044 43 RSAVTKKFTQTFVTAPATLRLFFHDCFV-------RGCDAS-VLLSSPNNRAEKDHPEDIS--LAGDGFDTVVKAKEAVD 112 (327)
Q Consensus 43 ~~~v~~~~~~d~~~aa~lLRL~FHDc~v-------~GcDgS-ill~~~~~~~E~~~~~N~~--L~~~~~~~i~~iK~~le 112 (327)
-..+++.+......++.||||+||++.+ ||++|+ |.|. +|++|+.|.+ | .+++.++++||+++.
T Consensus 16 i~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~-----pe~~w~~N~~~~L-~~~~~~Le~ik~~~~ 89 (297)
T cd08200 16 IAALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA-----PQKDWEVNEPEEL-AKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc-----cccCcCccCcHHH-HHHHHHHHHHHHHhc
Confidence 3567777777778899999999999986 899999 7764 7999999998 8 368999999999986
Q ss_pred cCCCCCCCcchHHHHHHhHHHHHHhcCC-----CceeeeccccCCCCCccccc--cCCCCCCC------------CCHHH
Q 046044 113 SDPQCRNKVSCADILALATRDVVSLAGG-----PFYKVELGRRDGRISTIASV--QHKLPQPD------------FNLDQ 173 (327)
Q Consensus 113 ~~~~cp~~VScADilalAa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~ 173 (327)
..+.-...||+||+|+||+.+|||.+|| |.|+|.+||.|...+..... ...+|.+. ...+.
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 3111112699999999999999999999 99999999999987643211 11345332 24578
Q ss_pred HHHHHHhCCCCccCceeecccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCc
Q 046044 174 LNRMFSSHGLDQTDMIALSGAH-TIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPR 252 (327)
Q Consensus 174 l~~~F~~~Gls~~elVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 252 (327)
|++.|.++|||++|||||+||| ++|+.|..+ +.| | .+.+|.
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~-----------wT~~p~ 211 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------V-----------FTDRPG 211 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------C-----------CcCCCC
Confidence 9999999999999999999997 799988432 111 1 246899
Q ss_pred cccHHHHHHhhcCc--------------------c-----ccccccccccCcchHHHHHHHhhC--HHHHHHHHHHHHHH
Q 046044 253 IFDNAYYKNLQQGK--------------------G-----LFTSDQILFSDGRSRDTVVRFASN--KEAFNRAFISAITK 305 (327)
Q Consensus 253 ~FDN~Yy~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~K 305 (327)
+|||.||+||++.. | .+.+|.+|..|++.|++|+.||.| ++.||+||++||.|
T Consensus 212 ~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~K 291 (297)
T cd08200 212 VLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTK 291 (297)
T ss_pred ccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999999520 1 267899999999999999999998 99999999999999
Q ss_pred hhcCC
Q 046044 306 LGRVG 310 (327)
Q Consensus 306 m~~lg 310 (327)
|+++.
T Consensus 292 lmeld 296 (297)
T cd08200 292 VMNLD 296 (297)
T ss_pred HHhcC
Confidence 99875
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3e-36 Score=310.69 Aligned_cols=216 Identities=18% Similarity=0.211 Sum_probs=176.5
Q ss_pred HHHHHhhCCCchhhHHHHhhhcccc-------ccCCCc-eecCCCCCccccCCcCC--CCCcccchhHHHHHHHHcccCC
Q 046044 46 VTKKFTQTFVTAPATLRLFFHDCFV-------RGCDAS-VLLSSPNNRAEKDHPED--ISLAGDGFDTVVKAKEAVDSDP 115 (327)
Q Consensus 46 v~~~~~~d~~~aa~lLRL~FHDc~v-------~GcDgS-ill~~~~~~~E~~~~~N--~~L~~~~~~~i~~iK~~le~~~ 115 (327)
+++.+.......+.|||++||++.+ ||++|+ |.|. +|++++.| .+| .+.+.+++.||+++..
T Consensus 437 lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~-----pe~~w~~N~p~gL-~~vl~~Le~Ik~~f~~-- 508 (716)
T TIGR00198 437 LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE-----PQKNWPVNEPTRL-AKVLAVLEKIQAEFAK-- 508 (716)
T ss_pred HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc-----hhcCcccCCHHHH-HHHHHHHHHHHHHcCC--
Confidence 3334556677889999999999986 899999 8775 79999999 799 3689999999998874
Q ss_pred CCCCCcchHHHHHHhHHHHHHhc---CCC--ceeeeccccCCCCCccccccCCCC---CC------------CCCHHHHH
Q 046044 116 QCRNKVSCADILALATRDVVSLA---GGP--FYKVELGRRDGRISTIASVQHKLP---QP------------DFNLDQLN 175 (327)
Q Consensus 116 ~cp~~VScADilalAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~p------------~~~~~~l~ 175 (327)
..||.||+|+||+.+|||.+ ||| .++|.+||.|.+.+.. +++...| .+ ......|+
T Consensus 509 ---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~ 584 (716)
T TIGR00198 509 ---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLL 584 (716)
T ss_pred ---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHH
Confidence 25999999999999999998 898 5789999999987753 2333332 11 22456789
Q ss_pred HHHHhCCCCccCceeeccc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCccc
Q 046044 176 RMFSSHGLDQTDMIALSGA-HTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRIF 254 (327)
Q Consensus 176 ~~F~~~Gls~~elVaLsGa-HTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~F 254 (327)
+.|+++|||++|||||+|| |++|++|..+ +.|. .+.+|.+|
T Consensus 585 d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G~-------------------------------~T~~p~~f 626 (716)
T TIGR00198 585 DKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHGV-------------------------------FTDRVGVL 626 (716)
T ss_pred HHHHhCCCChHHHHheecchhhccccCCCC-------CCCC-------------------------------CcCCCCcc
Confidence 9999999999999999999 5999998532 1111 13589999
Q ss_pred cHHHHHHhhcCc--------------------c---c--cccccccccCcchHHHHHHHhhCH--HHHHHHHHHHHHHhh
Q 046044 255 DNAYYKNLQQGK--------------------G---L--FTSDQILFSDGRSRDTVVRFASNK--EAFNRAFISAITKLG 307 (327)
Q Consensus 255 DN~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~ 307 (327)
||.||+||++.. | + ..+|.+|.+|++.|++|+.||.|+ +.|++||++||.|++
T Consensus 627 ~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm 706 (716)
T TIGR00198 627 SNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVM 706 (716)
T ss_pred ccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999998621 1 2 278999999999999999999997 899999999999999
Q ss_pred cCCC
Q 046044 308 RVGV 311 (327)
Q Consensus 308 ~lgv 311 (327)
+++-
T Consensus 707 ~ldr 710 (716)
T TIGR00198 707 NLDR 710 (716)
T ss_pred hCCC
Confidence 9874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.8e-36 Score=306.63 Aligned_cols=223 Identities=21% Similarity=0.246 Sum_probs=182.6
Q ss_pred HHHHHHHhhCCCchhhHHHHhhhcccc-------ccCCCc-eecCCCCCccccCCcCCC--CCcccchhHHHHHHHHccc
Q 046044 44 SAVTKKFTQTFVTAPATLRLFFHDCFV-------RGCDAS-VLLSSPNNRAEKDHPEDI--SLAGDGFDTVVKAKEAVDS 113 (327)
Q Consensus 44 ~~v~~~~~~d~~~aa~lLRL~FHDc~v-------~GcDgS-ill~~~~~~~E~~~~~N~--~L~~~~~~~i~~iK~~le~ 113 (327)
..++..+....-..+.|||++||++.+ ||++|+ |.|. +|++++.|. +| .+.+++++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~-----Pq~~w~~N~p~~L-~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA-----PQKDWEVNEPAQL-AKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc-----cccCccccCHHHH-HHHHHHHHHHHHHHhh
Confidence 556777777777899999999999986 899999 8875 799999998 88 3689999999999864
Q ss_pred CCCCCCCcchHHHHHHhHHHHHHhc---CC--CceeeeccccCCCCCccccccC---CCCCCC------------CCHHH
Q 046044 114 DPQCRNKVSCADILALATRDVVSLA---GG--PFYKVELGRRDGRISTIASVQH---KLPQPD------------FNLDQ 173 (327)
Q Consensus 114 ~~~cp~~VScADilalAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~~~~ 173 (327)
.+.-...||.||+|+||+.+|||.+ || |.++|.+||.|++.+... ++. .+|.+. ...+.
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td-~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTD-VESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCC-cccccccCCCCccccccccccCCCCHHHH
Confidence 2122236999999999999999988 68 999999999999886432 222 456533 23478
Q ss_pred HHHHHHhCCCCccCceeecccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCc
Q 046044 174 LNRMFSSHGLDQTDMIALSGAH-TIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPR 252 (327)
Q Consensus 174 l~~~F~~~Gls~~elVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 252 (327)
|++.|+++|||++|||||+||| ++|+.|..++ .| | .+.+|.
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G--------------------~-----------~T~~p~ 636 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG--------------------V-----------FTDRPG 636 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC--------------------C-----------CcCCCC
Confidence 9999999999999999999997 7899884321 11 1 135899
Q ss_pred cccHHHHHHhhcCc--------------------c---c--cccccccccCcchHHHHHHHhhC--HHHHHHHHHHHHHH
Q 046044 253 IFDNAYYKNLQQGK--------------------G---L--FTSDQILFSDGRSRDTVVRFASN--KEAFNRAFISAITK 305 (327)
Q Consensus 253 ~FDN~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~K 305 (327)
+|||.||+||++.. | + +.+|..|.+|++.|++|+.||.| ++.|++||++||.|
T Consensus 637 ~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~K 716 (726)
T PRK15061 637 VLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTK 716 (726)
T ss_pred ccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999999521 1 1 47899999999999999999999 99999999999999
Q ss_pred hhcCCC
Q 046044 306 LGRVGV 311 (327)
Q Consensus 306 m~~lgv 311 (327)
+++++-
T Consensus 717 vmeldr 722 (726)
T PRK15061 717 VMNLDR 722 (726)
T ss_pred HHhCCC
Confidence 999874
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-32 Score=269.94 Aligned_cols=251 Identities=20% Similarity=0.220 Sum_probs=200.9
Q ss_pred HHHHHHHHHHhhCC--------CchhhHHHHhhhcccc-------ccCCC-ceecCCCCCccccCCcCCCCCcccchhHH
Q 046044 41 LVRSAVTKKFTQTF--------VTAPATLRLFFHDCFV-------RGCDA-SVLLSSPNNRAEKDHPEDISLAGDGFDTV 104 (327)
Q Consensus 41 iV~~~v~~~~~~d~--------~~aa~lLRL~FHDc~v-------~GcDg-Sill~~~~~~~E~~~~~N~~L~~~~~~~i 104 (327)
-|+..+...+.... ..+|.+|||+||-+++ ||..+ ... |.++.++|.|.+| ++++.++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qR-----FaPlnSWPDN~nL-DKarRLL 144 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQR-----FAPLNSWPDNANL-DKARRLL 144 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCcee-----cccccCCCcccch-HHHHHHh
Confidence 34555555555432 5899999999999986 44443 333 5689999999999 5799999
Q ss_pred HHHHHHcccCCCCCCCcchHHHHHHhHHHHHHhcCCCceeeeccccCCCCCccc--------------------------
Q 046044 105 VKAKEAVDSDPQCRNKVSCADILALATRDVVSLAGGPFYKVELGRRDGRISTIA-------------------------- 158 (327)
Q Consensus 105 ~~iK~~le~~~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~-------------------------- 158 (327)
..||+++.. .||+||+|+||+.+|++.+|++.+.|..||.|-..+...
T Consensus 145 WPIKkKYG~------kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Pla 218 (730)
T COG0376 145 WPIKKKYGR------KISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLA 218 (730)
T ss_pred hhHhHhhcc------cccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchh
Confidence 999997764 799999999999999999999999999999998776530
Q ss_pred -----------cccCCCCCCCCCHHHHHHHHHhCCCCccCceeec-cccccccccccccccccccCCCCCCCCCCCCHHH
Q 046044 159 -----------SVQHKLPQPDFNLDQLNRMFSSHGLDQTDMIALS-GAHTIGFSHCSRFSKRIYNFSPRNRIDPTLNFNY 226 (327)
Q Consensus 159 -----------~~~~~lP~p~~~~~~l~~~F~~~Gls~~elVaLs-GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~ 226 (327)
+-++..|+|..+..+++..|++|+|+++|.|||+ ||||+|++|...-...+ +++|.-.+--
T Consensus 219 avqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie 291 (730)
T COG0376 219 AVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIE 291 (730)
T ss_pred hheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchh
Confidence 1134689999999999999999999999999998 69999999976533322 4788777777
Q ss_pred HHHHhcC--CCCCCC-CCccc---cCCCCCCccccHHHHHHhhcC-----------------------------------
Q 046044 227 AMQLRGM--CPVRVD-PRIAI---DMDPTTPRIFDNAYYKNLQQG----------------------------------- 265 (327)
Q Consensus 227 ~~~L~~~--Cp~~~~-~~~~~---~lD~~Tp~~FDN~Yy~~l~~~----------------------------------- 265 (327)
.+.|-.. |-.+.+ +..+. ..++.||++|||+||.+|+..
T Consensus 292 ~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~ 371 (730)
T COG0376 292 QQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHG 371 (730)
T ss_pred hhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccC
Confidence 7777543 332222 22221 235679999999999999853
Q ss_pred ccccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCC
Q 046044 266 KGLFTSDQILFSDGRSRDTVVRFASNKEAFNRAFISAITKLGRVG 310 (327)
Q Consensus 266 ~gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 310 (327)
..||++|.+|..||..+++.++|..|++.|.+.|++||.||.+-+
T Consensus 372 p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 372 PMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred ceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 158999999999999999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.66 E-value=8.6e-16 Score=152.81 Aligned_cols=217 Identities=21% Similarity=0.255 Sum_probs=164.1
Q ss_pred HHHHHHHhhCCCchhhHHHHhhhcccc-------ccCCCc-eecCCCCCccccCCcCCC--CCcccchhHHHHHHHHccc
Q 046044 44 SAVTKKFTQTFVTAPATLRLFFHDCFV-------RGCDAS-VLLSSPNNRAEKDHPEDI--SLAGDGFDTVVKAKEAVDS 113 (327)
Q Consensus 44 ~~v~~~~~~d~~~aa~lLRL~FHDc~v-------~GcDgS-ill~~~~~~~E~~~~~N~--~L~~~~~~~i~~iK~~le~ 113 (327)
..++..+....-....|+-.+|..+-+ ||.+|. |.|. +.++|+.|. .|. +.+.+++.|.+.+++
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa-----PqkdWevN~P~~l~-kvl~~le~iq~~fnk 525 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA-----PQKDWEVNQPAELA-KVLAVLEKIQKEFNK 525 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec-----ccccCCCCCHHHHH-HHHHHHHHHHHHhcC
Confidence 456667777777899999999998875 788888 6664 789999995 452 468999999998886
Q ss_pred CCCCCCCcchHHHHHHhHHHHHHhc---CCCce--eeeccccCCCCCccccccCC-C-CC------------CCCCHHHH
Q 046044 114 DPQCRNKVSCADILALATRDVVSLA---GGPFY--KVELGRRDGRISTIASVQHK-L-PQ------------PDFNLDQL 174 (327)
Q Consensus 114 ~~~cp~~VScADilalAa~~av~~~---GGP~~--~v~~GR~D~~~s~~~~~~~~-l-P~------------p~~~~~~l 174 (327)
.||.||+|+|++..+||.+ +|-.+ +|.+||.|++........-. | |- ......-|
T Consensus 526 ------kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~L 599 (730)
T COG0376 526 ------KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELL 599 (730)
T ss_pred ------ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHH
Confidence 6999999999999999964 67655 56799999987654321111 1 21 12234557
Q ss_pred HHHHHhCCCCccCceeecccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHhcCCCCCCCCCccccCCCCCCcc
Q 046044 175 NRMFSSHGLDQTDMIALSGAH-TIGFSHCSRFSKRIYNFSPRNRIDPTLNFNYAMQLRGMCPVRVDPRIAIDMDPTTPRI 253 (327)
Q Consensus 175 ~~~F~~~Gls~~elVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~ 253 (327)
++.-+-.+||..||++|.||. .+|..+ .| ....+.- ..|..
T Consensus 600 vDkAqlL~LtapemtVLiGGlRvLg~n~-----------g~-------------------------s~~GVfT--~~pg~ 641 (730)
T COG0376 600 VDKAQLLTLTAPEMTVLIGGLRVLGANY-----------GG-------------------------SKHGVFT--DRPGV 641 (730)
T ss_pred HHHHHHhccCCccceEEEcceEeeccCC-----------CC-------------------------Cccceec--cCccc
Confidence 899999999999999999875 333332 11 1122332 36888
Q ss_pred ccHHHHHHhhcCc--------------------cc-----cccccccccCcchHHHHHHHhhC--HHHHHHHHHHHHHHh
Q 046044 254 FDNAYYKNLQQGK--------------------GL-----FTSDQILFSDGRSRDTVVRFASN--KEAFNRAFISAITKL 306 (327)
Q Consensus 254 FDN~Yy~~l~~~~--------------------gl-----l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 306 (327)
+.|.||.||++.. |- -..|..+.++++.|.+.+.||.| ++.|.+||++||.|.
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kV 721 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKV 721 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9999999998631 21 36788888999999999999986 799999999999999
Q ss_pred hcCC
Q 046044 307 GRVG 310 (327)
Q Consensus 307 ~~lg 310 (327)
.++.
T Consensus 722 Mn~D 725 (730)
T COG0376 722 MNLD 725 (730)
T ss_pred hccc
Confidence 8876
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.47 E-value=2.5 Score=34.07 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=10.6
Q ss_pred CCchhHHHHHHHHHHHHH
Q 046044 1 METKSFFIILSSVVFSLI 18 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (327)
|++|..+++.|+++++|+
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 899986655444433333
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.50 E-value=12 Score=28.57 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhhccccCCcchhhcCCccHHHHHHHHHHHHHhhCCCchhhHHHHhhhccc
Q 046044 6 FFIILSSVVFSLIMTGASAQLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCF 69 (327)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~fY~~tCp~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~ 69 (327)
.|++++++++++++... -||| |.|+.+.+.++++|.+-...||+-+---+
T Consensus 3 l~lail~ivl~ll~G~~-----~G~f---------iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 3 LWLAILLIVLALLAGLI-----GGFF---------IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred hHHHHHHHHHHHHHHHH-----HHHH---------HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 35556666666665432 2343 78999999999999999999999886553
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=61.31 E-value=78 Score=31.20 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred hcCCCceeeeccccCCCCCccccccCCCCC---CCCCHHHHHHHHHhCCCCc
Q 046044 137 LAGGPFYKVELGRRDGRISTIASVQHKLPQ---PDFNLDQLNRMFSSHGLDQ 185 (327)
Q Consensus 137 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gls~ 185 (327)
.+|-..+..++||.+...-.+.......+. +-..+.++.++|++.|+..
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 357778899999996543222111111121 2235778888999999865
No 22
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=47.88 E-value=16 Score=28.60 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 046044 294 AFNRAFISAITKLGRVGV 311 (327)
Q Consensus 294 ~F~~~Fa~Am~Km~~lgv 311 (327)
....+|..||.||+.||.
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356799999999999874
No 23
>PRK01844 hypothetical protein; Provisional
Probab=37.12 E-value=80 Score=24.26 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhccccCCcchhhcCCccHHHHHHHHHHHHHhhCCCchhhHHHHhhhccc
Q 046044 7 FIILSSVVFSLIMTGASAQLREDFYRSTCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCF 69 (327)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~fY~~tCp~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~ 69 (327)
|+.+++++++++... --||| +-|+.+.+.++++|.+-...||.-+---+
T Consensus 4 ~~~I~l~I~~li~G~-----~~Gff---------~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 4 WLGILVGVVALVAGV-----ALGFF---------IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHHHH-----HHHHH---------HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 444555555555442 23565 56888999999999999999998876553
No 24
>PRK00523 hypothetical protein; Provisional
Probab=30.51 E-value=1.2e+02 Score=23.36 Aligned_cols=29 Identities=7% Similarity=0.120 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHhhhccc
Q 046044 41 LVRSAVTKKFTQTFVTAPATLRLFFHDCF 69 (327)
Q Consensus 41 iV~~~v~~~~~~d~~~aa~lLRL~FHDc~ 69 (327)
+-|+.+++.++++|.+-...||.-+---+
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QMG 53 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQMG 53 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHhC
Confidence 56888999999999999999998876553
No 25
>PF15240 Pro-rich: Proline-rich
Probab=28.75 E-value=41 Score=30.24 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 046044 7 FIILSSVVFSLI 18 (327)
Q Consensus 7 ~~~~~~~~~~~~ 18 (327)
|+|||.|+|++|
T Consensus 2 LlVLLSvALLAL 13 (179)
T PF15240_consen 2 LLVLLSVALLAL 13 (179)
T ss_pred hhHHHHHHHHHh
Confidence 344444443333
No 26
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=24.15 E-value=47 Score=29.79 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.6
Q ss_pred hhhcCCccHH
Q 046044 30 FYRSTCPNVE 39 (327)
Q Consensus 30 fY~~tCp~~e 39 (327)
.|+.+||+..
T Consensus 108 wYDqsCPdGF 117 (186)
T PF06387_consen 108 WYDQSCPDGF 117 (186)
T ss_pred eecccCCCcc
Confidence 3777999964
No 27
>KOG3803 consensus Transcription factor containing C2HC type Zn finger [Transcription]
Probab=22.32 E-value=53 Score=35.12 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=24.2
Q ss_pred cCCccHHHHHHHHHHHHHhhCCCchhhHHHHhhhccccccCCCceecC
Q 046044 33 STCPNVESLVRSAVTKKFTQTFVTAPATLRLFFHDCFVRGCDASVLLS 80 (327)
Q Consensus 33 ~tCp~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDc~v~GcDgSill~ 80 (327)
+-||-+|+++|..|...-..= -|=+-|||||--+.
T Consensus 670 sgcpladks~Rslma~~sqeL-------------kCPTPGCDGSGHiT 704 (968)
T KOG3803|consen 670 SGCPLADKSLRSLMAAGSQEL-------------KCPTPGCDGSGHIT 704 (968)
T ss_pred cCCchhHHHHHHHHhcccccc-------------cCCCCCCCCCCccc
Confidence 458888888887776532221 27789999996654
No 28
>PHA03156 hypothetical protein; Provisional
Probab=21.91 E-value=1e+02 Score=24.59 Aligned_cols=11 Identities=27% Similarity=0.969 Sum_probs=9.2
Q ss_pred CcchhhcCCcc
Q 046044 27 REDFYRSTCPN 37 (327)
Q Consensus 27 ~~~fY~~tCp~ 37 (327)
..+||+.+|..
T Consensus 36 ~~~FY~~~C~a 46 (90)
T PHA03156 36 NNNFYSNSCSA 46 (90)
T ss_pred CCCccccCcCc
Confidence 68999999954
No 29
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.26 E-value=4.9e+02 Score=25.48 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=31.6
Q ss_pred hcCCCceeeeccccCCCCCccccccC---CCCCCCCCHHHHHHHHHhCCCCccCc
Q 046044 137 LAGGPFYKVELGRRDGRISTIASVQH---KLPQPDFNLDQLNRMFSSHGLDQTDM 188 (327)
Q Consensus 137 ~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~Gls~~el 188 (327)
.+|-..+..++||.+-..-....... ..-++-..+.++.+.|++.|+..+=|
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im 221 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVM 221 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEE
Confidence 45778899999998764221110000 01123346788889999999976444
No 30
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=21.00 E-value=62 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhCCCCccCceee-cccccccccc
Q 046044 170 NLDQLNRMFSSHGLDQTDMIAL-SGAHTIGFSH 201 (327)
Q Consensus 170 ~~~~l~~~F~~~Gls~~elVaL-sGaHTiG~~h 201 (327)
++.+-+-.|+++||++.++=++ --+|-||++.
T Consensus 32 dvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 32 DVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 4555666899999999997554 5899999876
No 31
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=20.15 E-value=2.1e+02 Score=21.28 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=17.5
Q ss_pred CCCCCcchHHHHHHhHHHHHHhcC
Q 046044 116 QCRNKVSCADILALATRDVVSLAG 139 (327)
Q Consensus 116 ~cp~~VScADilalAa~~av~~~G 139 (327)
-+...+|.||+..+....-+...+
T Consensus 50 l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 50 LVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp SSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred eeccCCchhHHHHHHHHHHHHHhC
Confidence 566789999998888877666543
Done!