Query 046045
Match_columns 119
No_of_seqs 118 out of 177
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.2 0.00075 2.6E-08 43.0 5.3 40 78-117 3-42 (77)
2 1wz6_A HMG-box transcription f 97.1 0.00093 3.2E-08 43.3 4.9 40 78-117 4-43 (82)
3 1wxl_A Single-strand recogniti 96.9 0.0017 5.9E-08 41.2 5.3 39 79-117 1-39 (73)
4 3nm9_A HMG-D, high mobility gr 96.9 0.0017 6E-08 41.2 5.2 36 82-117 4-39 (73)
5 2cs1_A PMS1 protein homolog 1; 96.9 0.0019 6.6E-08 42.9 5.6 39 79-117 5-43 (92)
6 1wgf_A Upstream binding factor 96.9 0.0036 1.2E-07 41.5 6.8 42 76-117 15-56 (90)
7 2e6o_A HMG box-containing prot 96.9 0.0018 6.1E-08 42.6 5.1 42 76-117 12-53 (87)
8 1hry_A Human SRY; DNA, DNA-bin 96.9 0.0014 4.7E-08 41.7 4.3 39 79-117 2-40 (76)
9 2crj_A SWI/SNF-related matrix- 96.8 0.0025 8.5E-08 42.3 5.7 41 77-117 3-43 (92)
10 1j46_A SRY, sex-determining re 96.8 0.0025 8.7E-08 41.6 5.2 39 79-117 2-40 (85)
11 2co9_A Thymus high mobility gr 96.7 0.0024 8.3E-08 43.3 5.0 42 76-117 12-53 (102)
12 3f27_D Transcription factor SO 96.6 0.0031 1E-07 40.7 4.8 38 80-117 5-42 (83)
13 1k99_A Upstream binding factor 96.6 0.003 1E-07 42.8 4.8 41 77-117 6-46 (99)
14 4euw_A Transcription factor SO 96.5 0.0041 1.4E-07 42.6 5.1 42 76-117 24-65 (106)
15 2eqz_A High mobility group pro 96.5 0.0047 1.6E-07 40.4 5.1 40 77-116 11-52 (86)
16 2gzk_A Sex-determining region 96.5 0.0054 1.9E-07 43.7 5.7 41 77-117 84-124 (159)
17 1i11_A Transcription factor SO 96.4 0.0053 1.8E-07 39.5 4.9 37 81-117 4-40 (81)
18 4a3n_A Transcription factor SO 96.4 0.0046 1.6E-07 38.4 4.3 35 83-117 4-38 (71)
19 2yrq_A High mobility group pro 96.3 0.0072 2.5E-07 43.9 5.5 40 78-117 98-137 (173)
20 1ckt_A High mobility group 1 p 96.3 0.0067 2.3E-07 37.9 4.6 34 83-116 3-38 (71)
21 1gt0_D Transcription factor SO 96.2 0.0078 2.7E-07 38.5 4.8 36 82-117 3-38 (80)
22 3u2b_C Transcription factor SO 96.2 0.0064 2.2E-07 38.7 4.3 35 83-117 4-38 (79)
23 2yrq_A High mobility group pro 96.0 0.012 4.1E-07 42.7 5.6 42 76-117 10-53 (173)
24 1cg7_A Protein (NON histone pr 96.0 0.0023 7.8E-08 42.7 1.5 41 76-116 15-55 (93)
25 2lef_A LEF-1 HMG, protein (lym 95.8 0.013 4.5E-07 38.1 4.6 35 83-117 4-38 (86)
26 1aab_A High mobility group pro 95.8 0.0057 2E-07 39.5 2.9 32 78-109 4-35 (83)
27 2lhj_A High mobility group pro 95.8 0.0038 1.3E-07 41.8 2.0 42 76-117 17-60 (97)
28 2d7l_A WD repeat and HMG-box D 95.7 0.02 6.9E-07 37.9 5.3 33 82-114 6-39 (81)
29 3tmm_A Transcription factor A, 95.2 0.017 5.8E-07 44.6 3.9 41 77-117 37-77 (238)
30 3tq6_A Transcription factor A, 95.1 0.018 6.2E-07 43.8 4.0 39 79-117 7-45 (214)
31 2gzk_A Sex-determining region 94.7 0.054 1.9E-06 38.5 5.2 39 79-117 2-40 (159)
32 1l8y_A Upstream binding factor 92.9 0.18 6.3E-06 34.7 5.1 29 82-111 5-33 (91)
33 2yuk_A Myeloid/lymphoid or mix 92.4 0.025 8.6E-07 38.8 0.1 27 82-108 23-49 (90)
34 3fgh_A Transcription factor A, 90.2 0.18 6.1E-06 31.1 2.4 23 83-105 4-26 (67)
35 1v64_A Nucleolar transcription 84.6 1 3.5E-05 30.8 3.8 31 83-117 19-49 (108)
36 1v63_A Nucleolar transcription 84.1 1.4 4.7E-05 29.8 4.2 32 84-117 11-42 (101)
37 3tq6_A Transcription factor A, 82.0 0.24 8.4E-06 37.5 -0.3 28 79-106 112-139 (214)
38 3tmm_A Transcription factor A, 81.7 0.25 8.4E-06 38.0 -0.3 28 79-106 144-171 (238)
39 2cto_A Novel protein; high mob 72.9 1.6 5.5E-05 29.6 1.8 25 83-109 12-36 (93)
40 3uky_C Nuclear CAP-binding pro 45.8 5.6 0.00019 23.1 0.5 6 81-86 27-32 (32)
41 2e2z_A TIM15; protein import, 41.2 10 0.00034 26.8 1.3 19 10-28 35-55 (100)
42 3he5_B Synzip2; heterodimeric 35.4 16 0.00055 22.9 1.4 20 87-106 2-21 (52)
43 1bb1_B Designed, thermostable 32.8 24 0.00081 20.7 1.8 13 91-103 12-24 (36)
44 3sja_C Golgi to ER traffic pro 31.2 18 0.00063 23.7 1.2 29 91-119 9-37 (65)
45 3fgx_A Rbstp2171; structural g 30.9 27 0.00092 25.1 2.2 11 85-95 46-56 (114)
46 1t6f_A Geminin; coiled-coil, c 29.3 18 0.00061 21.6 0.9 13 94-106 20-32 (37)
47 2vqc_A Hypothetical 13.2 kDa p 28.5 28 0.00095 25.0 1.9 20 85-106 43-62 (118)
48 3bbp_D GRIP and coiled-coil do 27.6 30 0.001 23.2 1.8 17 86-102 48-64 (71)
49 2oc5_A Hypothetical protein; D 25.5 28 0.00095 28.0 1.6 31 87-119 48-87 (244)
50 1s3a_A NADH-ubiquinone oxidore 22.2 53 0.0018 21.9 2.3 19 90-108 37-55 (102)
51 3sjb_C Golgi to ER traffic pro 22.2 30 0.001 24.1 1.0 30 90-119 25-54 (93)
52 1bb1_A Designed, thermostable 20.7 54 0.0018 19.2 1.8 13 91-103 12-24 (36)
53 2ygg_A Sodium/hydrogen exchang 20.3 7.4 0.00025 26.0 -2.3 10 82-92 24-33 (70)
54 3vlc_E Golgi to ER traffic pro 20.2 35 0.0012 23.8 1.0 30 90-119 32-61 (94)
55 3b2e_E Golgi to ER traffic pro 24.7 23 0.00079 24.1 0.0 28 92-119 24-51 (84)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.18 E-value=0.00075 Score=43.01 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 78 PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 78 PPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
-|.+-.|-+|||..|+++.-..|++++|+++..|.-..++
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg 42 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 42 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4556678899999999999999999999999988766554
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.05 E-value=0.00093 Score=43.28 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=34.4
Q ss_pred CCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 78 PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 78 PPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
+|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++
T Consensus 4 ~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg 43 (82)
T 1wz6_A 4 GSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILA 43 (82)
T ss_dssp SCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5666678899999999999999999999999888766554
No 3
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=96.93 E-value=0.0017 Score=41.24 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg 39 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGG 39 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 344567899999999999999999999999887655543
No 4
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=96.92 E-value=0.0017 Score=41.22 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 82 KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 82 RQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
-.|-+|||..|+++.-..|++++|+++..|.-+.++
T Consensus 4 PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg 39 (73)
T 3nm9_A 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGG 39 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 357899999999999999999999999988766554
No 5
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0019 Score=42.89 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++
T Consensus 5 p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg 43 (92)
T 2cs1_A 5 SSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIE 43 (92)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 444556799999999999999999999999888765543
No 6
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.90 E-value=0.0036 Score=41.51 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=35.0
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.+.|.+-.|-++||..|+++.-..|++++|++++.|.-+.++
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg 56 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLA 56 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 345666678899999999999999999999999988765543
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=96.86 E-value=0.0018 Score=42.64 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=35.3
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.+-|.+-.|-++||..|+++.-+.|++++|++++.|.-+.++
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg 53 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILG 53 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 445666778899999999999999999999999988765543
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=96.86 E-value=0.0014 Score=41.68 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|.+-.|-+|||..|+++.-+.|++++|+++..|.-+.++
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg 40 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLG 40 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHH
Confidence 445567899999999999999999999999888765544
No 9
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=96.83 E-value=0.0025 Score=42.34 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.1
Q ss_pred CCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 77 KPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 77 kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
+-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg 43 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 43 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 34556677899999999999999999999999888765543
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=96.77 E-value=0.0025 Score=41.63 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg 40 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLG 40 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 344567799999999999999999999999988765554
No 11
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.73 E-value=0.0024 Score=43.33 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=34.9
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.+-|.+-.|-++||..|+++.-..|++++|+++..|.-+.++
T Consensus 12 ~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg 53 (102)
T 2co9_A 12 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVA 53 (102)
T ss_dssp CCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 345666678899999999999999999999999887655543
No 12
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=96.64 E-value=0.0031 Score=40.65 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=31.4
Q ss_pred CcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 80 EKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 80 EKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.|-.|-+|||..|+++.-..|++++|++++.|.-+.++
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg 42 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLG 42 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 34457889999999999999999999999988766554
No 13
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=96.60 E-value=0.003 Score=42.84 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=34.2
Q ss_pred CCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 77 KPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 77 kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg 46 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILS 46 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 45666678899999999999999999999999887655543
No 14
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=96.52 E-value=0.0041 Score=42.65 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=33.4
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.+.|.+-.|-++||..|+++.-..|++++|++++.|.-+.++
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg 65 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLG 65 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 456667778899999999999999999999999988765554
No 15
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.0047 Score=40.43 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCH--HHHHHHH
Q 046045 77 KPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPH--REAFSTA 116 (119)
Q Consensus 77 kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~h--kEaF~~a 116 (119)
+-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.+
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~l 52 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKC 52 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Confidence 345555678899999999999999999999874 5554433
No 16
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.48 E-value=0.0054 Score=43.74 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=34.3
Q ss_pred CCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 77 KPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 77 kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
+-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg 124 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 124 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHH
Confidence 44555667899999999999999999999999988765544
No 17
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.41 E-value=0.0053 Score=39.54 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=31.3
Q ss_pred cCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 81 KKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 81 KRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
+-.|-+|||..|+++.-+.|++++|++++.|.-+.++
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg 40 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILG 40 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3446789999999999999999999999988765544
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=96.39 E-value=0.0046 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.|-+|||..|+++.-..|++.+|++++.|.-+.++
T Consensus 4 krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg 38 (71)
T 4a3n_A 4 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLG 38 (71)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46789999999999999999999999988765554
No 19
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.0072 Score=43.86 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 78 PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 78 PPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
-|.+-.|-+|||..|+++....|++++|+++..|.-+.++
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg 137 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 137 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4555567789999999999999999999999998766554
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=96.27 E-value=0.0067 Score=37.86 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=28.3
Q ss_pred CCCchhhhHHHHHHHHHHHHhCCCCCH--HHHHHHH
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANPEIPH--REAFSTA 116 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p~i~h--kEaF~~a 116 (119)
.|-+|||..|+++.-..|++.+|+++. .|.-+.+
T Consensus 3 KrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~l 38 (71)
T 1ckt_A 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKC 38 (71)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Confidence 567899999999999999999999975 6554443
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=96.19 E-value=0.0078 Score=38.54 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 82 KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 82 RQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
-.|-+|||..|+++.-..|++++|+++..|.-+.++
T Consensus 3 pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg 38 (80)
T 1gt0_D 3 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 38 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 346789999999999999999999999888765544
No 22
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=96.18 E-value=0.0064 Score=38.66 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.|-+|||..|+++.-..|++++|++++.|.-+.++
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg 38 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLG 38 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHH
Confidence 46789999999999999999999999988665544
No 23
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.012 Score=42.67 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=34.4
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCC--CCHHHHHHHHh
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPE--IPHREAFSTAA 117 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~--i~hkEaF~~aa 117 (119)
.+-|.+-.|-+|||..|+++....|++.||+ ++-.|..+.++
T Consensus 10 k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg 53 (173)
T 2yrq_A 10 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCS 53 (173)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 3456666788999999999999999999999 57777766554
No 24
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=95.98 E-value=0.0023 Score=42.70 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=33.6
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTA 116 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~a 116 (119)
.+.|.+-.|-+|||..|+++.-..|+++||+++..|.-..+
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~l 55 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKL 55 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 34566667889999999999999999999999987765443
No 25
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.83 E-value=0.013 Score=38.14 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
-|-+|||..|+++.-+.|++++|++++.|.-..++
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg 38 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILG 38 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46789999999999999999999999887655543
No 26
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=95.83 E-value=0.0057 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCCcCCCCchhhhHHHHHHHHHHHHhCCCCCH
Q 046045 78 PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPH 109 (119)
Q Consensus 78 PPEKRQRvpsayn~fmK~ei~riK~~~p~i~h 109 (119)
-|.+-.|-+|||..|+++.-..|++++|+++.
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~ 35 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASV 35 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Confidence 35555778999999999999999999999863
No 27
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=95.80 E-value=0.0038 Score=41.78 Aligned_cols=42 Identities=33% Similarity=0.325 Sum_probs=35.1
Q ss_pred CCCCCcCCCCchhhhHHHHHHHHHHHHhCCCCC--HHHHHHHHh
Q 046045 76 VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIP--HREAFSTAA 117 (119)
Q Consensus 76 ~kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~--hkEaF~~aa 117 (119)
.+.|.+-.|-+|||..|+++.-..|++++|+++ ..|.-..++
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg 60 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIG 60 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Confidence 456777788899999999999999999999998 777655543
No 28
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.73 E-value=0.02 Score=37.91 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCCchhhhHHHHHHHHHHHHhCCCCC-HHHHHH
Q 046045 82 KHRLPSAYNRFMKEEIQRIKAANPEIP-HREAFS 114 (119)
Q Consensus 82 RQRvpsayn~fmK~ei~riK~~~p~i~-hkEaF~ 114 (119)
-.|-+|||..|+++.-..|+++||+++ ..|.-+
T Consensus 6 PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK 39 (81)
T 2d7l_A 6 SGRPKTGFQMWLEENRSNILSDNPDFSDEADIIK 39 (81)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 346799999999999999999999997 555443
No 29
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=95.17 E-value=0.017 Score=44.63 Aligned_cols=41 Identities=29% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCCCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 77 KPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 77 kPPEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
+-|.+-.|-+|||..|+++....|+++||+++..|..+.++
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lg 77 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIA 77 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34566678899999999999999999999999877665543
No 30
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=95.15 E-value=0.018 Score=43.80 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=32.3
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|.+-.|-+|||..|+++....|+++||+++..|....++
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg 45 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIA 45 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344457899999999999999999999999877766544
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=94.70 E-value=0.054 Score=38.47 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=33.9
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|++..|-++||-.|++++-.+|+..+|+++..|.-+.++
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg 40 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLG 40 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 556677899999999999999999999999998876654
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=92.90 E-value=0.18 Score=34.67 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=24.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHhCCCCCHHH
Q 046045 82 KHRLPSAYNRFMKEEIQRIKAANPEIPHRE 111 (119)
Q Consensus 82 RQRvpsayn~fmK~ei~riK~~~p~i~hkE 111 (119)
--|-+|||+.|+.+.+..+++.+|+ ...|
T Consensus 5 PKrP~SAy~lf~~~~r~~~k~~~p~-~~~e 33 (91)
T 1l8y_A 5 PESPKRAEEIWQQSVIGDYLARFKN-DRVK 33 (91)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTS-THHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCC-CHHH
Confidence 3467999999999999999999999 5544
No 33
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.36 E-value=0.025 Score=38.83 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=24.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHhCCCCC
Q 046045 82 KHRLPSAYNRFMKEEIQRIKAANPEIP 108 (119)
Q Consensus 82 RQRvpsayn~fmK~ei~riK~~~p~i~ 108 (119)
-.|-||||-.|+.++-.+||++||+++
T Consensus 23 PKRp~sAf~lf~~e~R~kik~enP~~s 49 (90)
T 2yuk_A 23 GEMATVAPVLYTNINFPNLKEEFPDWT 49 (90)
T ss_dssp GGGCSSSHHHHHHHHCTTHHHHCCSHH
T ss_pred CCCCccHHHHHHHHhHHHHHHHCcCcc
Confidence 367899999999999999999999986
No 34
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=90.24 E-value=0.18 Score=31.12 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.8
Q ss_pred CCCchhhhHHHHHHHHHHHHhCC
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANP 105 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p 105 (119)
.|-+|||..|+++.-..++..+|
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p 26 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP 26 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH
Confidence 56789999999999999998887
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=84.59 E-value=1 Score=30.81 Aligned_cols=31 Identities=19% Similarity=0.466 Sum_probs=24.3
Q ss_pred CCCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
.|-+|||..|+++.-..|+ +++..|.-+.++
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg 49 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCS 49 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHH
Confidence 4678999999999988887 777777655543
No 36
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=84.08 E-value=1.4 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=20.9
Q ss_pred CCchhhhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 046045 84 RLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAA 117 (119)
Q Consensus 84 Rvpsayn~fmK~ei~riK~~~p~i~hkEaF~~aa 117 (119)
|-+|||..|+++.+. +..+++++..|.-+.++
T Consensus 11 rP~say~lF~~e~~~--~p~~~~~~~~eisK~lg 42 (101)
T 1v63_A 11 PPMNGYQKFSQELLS--NGELNHLPLKERMVEIG 42 (101)
T ss_dssp CCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHH
Confidence 358999999999854 23334466566655443
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=81.99 E-value=0.24 Score=37.50 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCC
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPE 106 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~ 106 (119)
|.+-.|-+|||..|+++...+|+..+|+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~ 139 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ 139 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH
Confidence 4444678999999999999999888875
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=81.72 E-value=0.25 Score=38.05 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.7
Q ss_pred CCcCCCCchhhhHHHHHHHHHHHHhCCC
Q 046045 79 PEKKHRLPSAYNRFMKEEIQRIKAANPE 106 (119)
Q Consensus 79 PEKRQRvpsayn~fmK~ei~riK~~~p~ 106 (119)
|.+-.|-+|||..|+++...+|+.++|+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~ 171 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ 171 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH
Confidence 5555678999999999999999888775
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.86 E-value=1.6 Score=29.62 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.9
Q ss_pred CCCchhhhHHHHHHHHHHHHhCCCCCH
Q 046045 83 HRLPSAYNRFMKEEIQRIKAANPEIPH 109 (119)
Q Consensus 83 QRvpsayn~fmK~ei~riK~~~p~i~h 109 (119)
.|-+|||..|+++.-.+||.+ +++-
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~ 36 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPV 36 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCH
Confidence 467899999999999999988 5543
No 40
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=45.83 E-value=5.6 Score=23.09 Aligned_cols=6 Identities=50% Similarity=1.232 Sum_probs=5.5
Q ss_pred cCCCCc
Q 046045 81 KKHRLP 86 (119)
Q Consensus 81 KRQRvp 86 (119)
||||+|
T Consensus 27 KRQR~P 32 (32)
T 3uky_C 27 KRQRIP 32 (32)
T ss_pred ccccCC
Confidence 899998
No 41
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=41.20 E-value=10 Score=26.85 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.0
Q ss_pred ceeeeecCCCccC--ccccCC
Q 046045 10 DTVTVKCGHCSNL--SFLSTR 28 (119)
Q Consensus 10 ~~VTVRCGHCtnL--lsVnm~ 28 (119)
-+|-|+|..|.|. ..=|++
T Consensus 35 GvViv~C~gC~n~HlIaDnLg 55 (100)
T 2e2z_A 35 GTVLISCPHCKVRHLIADHLK 55 (100)
T ss_dssp SEEEEECTTTCCEEESCCSSC
T ss_pred CEEEEEcCCCccceEeehhhh
Confidence 3799999999996 333444
No 42
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.36 E-value=16 Score=22.91 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHhCCC
Q 046045 87 SAYNRFMKEEIQRIKAANPE 106 (119)
Q Consensus 87 sayn~fmK~ei~riK~~~p~ 106 (119)
||-|.|+...|.|+|..|=.
T Consensus 2 sarnaylrkkiarlkkdnlq 21 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQ 21 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhh
Confidence 67899999999999987643
No 43
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=32.81 E-value=24 Score=20.70 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHh
Q 046045 91 RFMKEEIQRIKAA 103 (119)
Q Consensus 91 ~fmK~ei~riK~~ 103 (119)
.-|.||||-||++
T Consensus 12 aaieeeiqaikee 24 (36)
T 1bb1_B 12 AAIEEEIQAIKEE 24 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3466778888775
No 44
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=31.18 E-value=18 Score=23.67 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhhC
Q 046045 91 RFMKEEIQRIKAANPEIPHREAFSTAAKN 119 (119)
Q Consensus 91 ~fmK~ei~riK~~~p~i~hkEaF~~aaKN 119 (119)
+=++.||.+|+.+.-.||-.+-|-.=||+
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL 37 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKN 37 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 45789999999999999999999887774
No 45
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=30.92 E-value=27 Score=25.14 Aligned_cols=11 Identities=45% Similarity=0.489 Sum_probs=9.4
Q ss_pred CchhhhHHHHH
Q 046045 85 LPSAYNRFMKE 95 (119)
Q Consensus 85 vpsayn~fmK~ 95 (119)
.|..||+|+++
T Consensus 46 t~~~YnRyi~t 56 (114)
T 3fgx_A 46 KVSDISRFTKE 56 (114)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68899999974
No 46
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.34 E-value=18 Score=21.59 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=10.4
Q ss_pred HHHHHHHHHhCCC
Q 046045 94 KEEIQRIKAANPE 106 (119)
Q Consensus 94 K~ei~riK~~~p~ 106 (119)
.+||++||++|-+
T Consensus 20 deeIa~Lk~eN~e 32 (37)
T 1t6f_A 20 DNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 3799999998743
No 47
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=28.47 E-value=28 Score=24.99 Aligned_cols=20 Identities=35% Similarity=0.763 Sum_probs=16.9
Q ss_pred CchhhhHHHHHHHHHHHHhCCC
Q 046045 85 LPSAYNRFMKEEIQRIKAANPE 106 (119)
Q Consensus 85 vpsayn~fmK~ei~riK~~~p~ 106 (119)
+||||| +..-+.-|-+.+||
T Consensus 43 ~~sayn--iqr~l~~ice~hpd 62 (118)
T 2vqc_A 43 VPSAYN--IQRALKAICERHPD 62 (118)
T ss_dssp HHHHHH--HHHHHHHHHHHCTT
T ss_pred cchHhH--HHHHHHHHHhcCCc
Confidence 799999 56778888899998
No 48
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=27.61 E-value=30 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.3
Q ss_pred chhhhHHHHHHHHHHHH
Q 046045 86 PSAYNRFMKEEIQRIKA 102 (119)
Q Consensus 86 psayn~fmK~ei~riK~ 102 (119)
-..-|...|+||.|+--
T Consensus 48 L~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 48 LMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34568899999999854
No 49
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=25.46 E-value=28 Score=27.96 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=24.2
Q ss_pred hhhhHHH---------HHHHHHHHHhCCCCCHHHHHHHHhhC
Q 046045 87 SAYNRFM---------KEEIQRIKAANPEIPHREAFSTAAKN 119 (119)
Q Consensus 87 sayn~fm---------K~ei~riK~~~p~i~hkEaF~~aaKN 119 (119)
-||..|+ ++|+.||-.- +..|+-.|.++.||
T Consensus 48 eA~dNyi~la~llP~~~dEL~rLakM--E~rH~kgF~aCGrN 87 (244)
T 2oc5_A 48 EAHDNYIAIGTLLPDHVEELKRLAKM--EMRHKKGFTACGKN 87 (244)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHCcccHHHHHHHHHH--HHHHHhHHHHhccC
Confidence 3666676 4899998765 45799999999887
No 50
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=22.19 E-value=53 Score=21.86 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHhCCCCC
Q 046045 90 NRFMKEEIQRIKAANPEIP 108 (119)
Q Consensus 90 n~fmK~ei~riK~~~p~i~ 108 (119)
..|+...+..||..||++.
T Consensus 37 R~Fl~~~l~~~k~~NP~v~ 55 (102)
T 1s3a_A 37 RDFIEKRYVELKKANPDLP 55 (102)
T ss_dssp HHHHHHTHHHHHHHSTTCC
T ss_pred HHHHHHhhHHHHHHCCCce
Confidence 5799999999999999974
No 51
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.19 E-value=30 Score=24.09 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHhhC
Q 046045 90 NRFMKEEIQRIKAANPEIPHREAFSTAAKN 119 (119)
Q Consensus 90 n~fmK~ei~riK~~~p~i~hkEaF~~aaKN 119 (119)
.+=++.|+.+|+++.-.|+-.+-|-.=||+
T Consensus 25 ~~~lk~E~~~lk~E~~stSaQDeFAKWaKL 54 (93)
T 3sjb_C 25 YLAKVKERHELKEFNNSISAQDNYAKWTKN 54 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 345889999999999999999999887774
No 52
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=20.71 E-value=54 Score=19.16 Aligned_cols=13 Identities=46% Similarity=0.506 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q 046045 91 RFMKEEIQRIKAA 103 (119)
Q Consensus 91 ~fmK~ei~riK~~ 103 (119)
.-|||||.-||..
T Consensus 12 aaikeeiaaikdk 24 (36)
T 1bb1_A 12 AAIKEEIAAIKDK 24 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4589999988864
No 53
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=20.27 E-value=7.4 Score=26.04 Aligned_cols=10 Identities=60% Similarity=1.002 Sum_probs=7.2
Q ss_pred CCCCchhhhHH
Q 046045 82 KHRLPSAYNRF 92 (119)
Q Consensus 82 RQRvpsayn~f 92 (119)
|||+|| ||++
T Consensus 24 Rqr~~S-YnRH 33 (70)
T 2ygg_A 24 RQRLRS-YNRH 33 (70)
T ss_dssp HHHHHH-HHHS
T ss_pred HHhccc-cccc
Confidence 677777 7764
No 54
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=20.21 E-value=35 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHhhC
Q 046045 90 NRFMKEEIQRIKAANPEIPHREAFSTAAKN 119 (119)
Q Consensus 90 n~fmK~ei~riK~~~p~i~hkEaF~~aaKN 119 (119)
.+=++.|+.+|+++.-.|+-.+-|-.=||+
T Consensus 32 ~~~lk~E~~~lk~E~~stSaQDEFAKWAKL 61 (94)
T 3vlc_E 32 YLAKVKERHELKEFNNSISAQDNYAKWTKN 61 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 345889999999999999999999887774
No 55
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C
Probab=24.74 E-value=23 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhC
Q 046045 92 FMKEEIQRIKAANPEIPHREAFSTAAKN 119 (119)
Q Consensus 92 fmK~ei~riK~~~p~i~hkEaF~~aaKN 119 (119)
=|+.||.+||.+.-.|+-.+-|-.=||+
T Consensus 24 ~Lk~Ei~~lk~E~~stSaQDEFAKWAKL 51 (84)
T 3b2e_E 24 AKVKERHELKEFNNSISAQDNYAKWTKN 51 (84)
Confidence 4789999999999999999988776664
Done!