BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046046
MLPRWSRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQLVVSLDKMFWSK
PASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIY
DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG

High Scoring Gene Products

Symbol, full name Information P value
AT5G51220 protein from Arabidopsis thaliana 3.7e-48

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046046
        (177 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2176227 - symbol:AT5G51220 "AT5G51220" species...   503  3.7e-48   1


>TAIR|locus:2176227 [details] [associations]
            symbol:AT5G51220 "AT5G51220" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            GO:GO:0005739 EMBL:CP002688 InterPro:IPR021150 InterPro:IPR007129
            PANTHER:PTHR12184 Pfam:PF03981 EMBL:BT022076 EMBL:BT024508
            IPI:IPI00547916 RefSeq:NP_199935.2 UniGene:At.29690 STRING:Q500Z1
            PRIDE:Q500Z1 EnsemblPlants:AT5G51220.1 GeneID:835197
            KEGG:ath:AT5G51220 TAIR:At5g51220 InParanoid:Q500Z1 OMA:LLVLHMW
            PhylomeDB:Q500Z1 ProtClustDB:CLSN2680505 Genevestigator:Q500Z1
            Uniprot:Q500Z1
        Length = 281

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 104/183 (56%), Positives = 121/183 (66%)

Query:     1 MLPRWSRAV------RSLNSITQRNDFHAISRQSYXXXXXXXXXXXXXXXXTKQLVVSLD 54
             MLPR +R V      RSL +     +    SR  Y                  +  ++LD
Sbjct:     1 MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPSQKDFPSKSPINLD 60

Query:    55 KMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
             KMFWSKP SLAL  DSPLR+DEP Y GI+ FILK+M+FYSKQS SIRGANVIYKR+++QV
Sbjct:    61 KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 120

Query:   115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXXXXXXXXXXQYLYGIYNHDVELRVS 174
             DKPAIYDVFNLEKTF++T+SLLVLHMW  LRR            QY+Y IYNHDVELRVS
Sbjct:   121 DKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query:   175 KAG 177
             KAG
Sbjct:   181 KAG 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       149   0.00078  104 3  11 22  0.39    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.58u 0.18s 11.76t   Elapsed:  00:00:01
  Total cpu time:  11.58u 0.18s 11.76t   Elapsed:  00:00:01
  Start:  Fri May 10 17:22:23 2013   End:  Fri May 10 17:22:24 2013

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