BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046046
         (177 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
           OS=Xenopus laevis GN=uqcc PE=2 SV=1
          Length = 200

 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 106 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIY 165
           +Y   V ++D    ++  +L  T    F +  LH+W CL R+K+EG+ G  + +Y+    
Sbjct: 21  MYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEGRAGKYMCRYIVHSM 80

Query: 166 NHDVELRVSKAG 177
             DVE R    G
Sbjct: 81  WEDVEQRGKVMG 92


>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
           OS=Homo sapiens GN=UQCC PE=1 SV=3
          Length = 299

 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 64  LALAPDSPLRVDEPKYEGIKHF--ILKLMLF-----YSKQSKSIRGANVIYKRVVSQVDK 116
           L+   DSP    +P  E +  F  I++ M F     YSK    I  A  +Y   V + D 
Sbjct: 76  LSTTKDSP----QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKI-AALRMYTSCVEKTDF 130

Query: 117 PAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELR 172
              +    +  TF   F + +LH+W CL R+K+EG+ G  + + +      DV+ R
Sbjct: 131 EEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQR 186


>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
           OS=Mus musculus GN=Uqcc PE=2 SV=1
          Length = 295

 Score = 41.6 bits (96), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 91  LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
           L YSK    I  A  +Y   V + D    +    +  TF   F + +LH+W CL R+K+E
Sbjct: 102 LKYSKWKIKI-AALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query: 151 GKEGVELGQYLYGIYNHDVELR 172
           G+ G  + + +      DVE R
Sbjct: 161 GRTGKYMCRIIVHFMWEDVEQR 182


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,558,678
Number of Sequences: 539616
Number of extensions: 2199022
Number of successful extensions: 5903
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5898
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)