Query 046046
Match_columns 177
No_of_seqs 129 out of 230
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yvi_A Histidine-containing ph 28.7 52 0.0018 24.5 3.6 22 155-176 40-61 (149)
2 3us6_A Histidine-containing ph 24.1 79 0.0027 23.9 3.9 31 146-176 29-60 (153)
3 2cfa_A THYX, thymidylate synth 15.2 84 0.0029 25.0 2.4 64 101-165 135-202 (217)
4 3fwb_B Nuclear mRNA export pro 13.6 1.3E+02 0.0043 19.8 2.5 15 155-169 12-26 (55)
5 1y6d_A Phosphorelay protein LU 13.2 1.8E+02 0.0062 20.8 3.6 30 145-176 18-47 (120)
6 4g22_A Hydroxycinnamoyl-COA sh 12.7 1.2E+02 0.0041 26.0 2.8 24 128-151 255-278 (439)
7 2ksc_A Cyanoglobin; hemeprotei 12.2 2.1E+02 0.0072 20.1 3.6 50 118-177 49-98 (123)
8 2k4v_A Uncharacterized protein 11.4 1.2E+02 0.004 23.3 2.0 15 160-174 93-107 (125)
9 3f7w_A Putative fructosamine-3 10.2 2.1E+02 0.0072 22.3 3.3 27 123-149 245-271 (288)
10 3l0f_B C-phycocyanin beta chai 10.1 2.5E+02 0.0085 21.9 3.7 64 87-174 25-91 (172)
No 1
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=28.69 E-value=52 Score=24.54 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 046046 155 VELGQYLYGIYNHDVELRVSKA 176 (177)
Q Consensus 155 ~~l~Q~L~D~ff~DmE~RlRe~ 176 (177)
..+...|++.|++|.+..+.++
T Consensus 40 ~~~~~elv~~Fl~d~~~~l~~L 61 (149)
T 1yvi_A 40 PGFVSEVVTLFCDDADRIINEI 61 (149)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999887654
No 2
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=24.11 E-value=79 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=23.2
Q ss_pred HHhhcCc-hhhHHHHHHHHHHHHHHHHHHHhc
Q 046046 146 RLKEEGK-EGVELGQYLYGIYNHDVELRVSKA 176 (177)
Q Consensus 146 RLRaeg~-~G~~l~Q~L~D~ff~DmE~RlRe~ 176 (177)
+|+...+ ++..+.+.+++.|++|.+.++.++
T Consensus 29 qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L 60 (153)
T 3us6_A 29 QLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60 (153)
T ss_dssp HHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444432 357899999999999999988654
No 3
>2cfa_A THYX, thymidylate synthase; FDTS, TSCP, flavin dependent thymidylate synthase FAD, flavoprotein, nucleotide biosynthesis; HET: CME FAD; 2.3A {Paramecium bursaria chlorella virus 1} PDB: 2cfa_B*
Probab=15.17 E-value=84 Score=25.03 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhccchhhhhhcCCCCchhhHHHHH-HHHHHHHHHHHhhcCc---hhhHHHHHHHHHH
Q 046046 101 RGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLL-VLHMWFCLRRLKEEGK---EGVELGQYLYGIY 165 (177)
Q Consensus 101 raa~~LY~~ivaqar~p~fY~~~glPDTF~gwF~m~-~LHvWLllvRLRaeg~---~G~~l~Q~L~D~f 165 (177)
..+...|...++..-.++- ..+-||....+++-++ .++-|+=+.+||.... +-+.+++.+.+.+
T Consensus 135 ~~a~~~Y~~ll~~g~a~E~-AR~vLP~a~~T~~~~t~N~R~l~hf~~lR~~~~Aq~EiR~lA~~m~~~~ 202 (217)
T 2cfa_A 135 AQSMELYNKALEKGIAKEC-ARFILPLSTPTTIYMSGTIRDWIHYIELRTSNGTQREHIDLANACKEIF 202 (217)
T ss_dssp HHHHHHHHHHHHTTCCHHH-HGGGSCTTSEEEEEEEEEHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHH-HHHhCcccceeEEEEEEeHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 4566788888876443433 6778888777766555 6888888888888765 2456777777665
No 4
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=13.61 E-value=1.3e+02 Score=19.75 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHH
Q 046046 155 VELGQYLYGIYNHDV 169 (177)
Q Consensus 155 ~~l~Q~L~D~ff~Dm 169 (177)
..++.+||++|.+++
T Consensus 12 ~sLs~eLy~AFihE~ 26 (55)
T 3fwb_B 12 DTMTRELYDAFLHER 26 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999998874
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=13.23 E-value=1.8e+02 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHhc
Q 046046 145 RRLKEEGKEGVELGQYLYGIYNHDVELRVSKA 176 (177)
Q Consensus 145 vRLRaeg~~G~~l~Q~L~D~ff~DmE~RlRe~ 176 (177)
..|+.+ .|...-..+++.|++|.+..|.++
T Consensus 18 ~~L~~~--~g~~~~~e~~~~F~~e~~e~l~~L 47 (120)
T 1y6d_A 18 EELSAE--IGSDNVPVLLDIFLGEMDSYIGTL 47 (120)
T ss_dssp HHHTHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544 356677899999999999998765
No 6
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=12.67 E-value=1.2e+02 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcC
Q 046046 128 TFRMTFSLLVLHMWFCLRRLKEEG 151 (177)
Q Consensus 128 TF~gwF~m~~LHvWLllvRLRaeg 151 (177)
+.-|+|++++-|+|-++.|-|..+
T Consensus 255 ~~~St~dal~A~iWr~~~rAr~~~ 278 (439)
T 4g22_A 255 ISYSSYEMLAGHVWRCACKARGLE 278 (439)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHHHHHHHhcCCC
Confidence 457999999999999999998654
No 7
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=12.22 E-value=2.1e+02 Score=20.13 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=32.1
Q ss_pred hhhhhcCCCCchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhcC
Q 046046 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG 177 (177)
Q Consensus 118 ~fY~~~glPDTF~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L~D~ff~DmE~RlRe~G 177 (177)
+|-.-+|=|+++.|+ .|-.-|.=+.- +..+...-||.+...+..-|.+.|
T Consensus 49 Fl~~~~GGp~~Y~g~-~m~~~H~~~~~---------~~~I~~~~fd~wl~~~~~al~e~~ 98 (123)
T 2ksc_A 49 FMTYAFGGTDRFPGR-SMRAAHQDLVE---------NAGLTDVHFDAIAENLVLTLQELN 98 (123)
T ss_dssp HHHHHTTCTTSCCST-HHHHHHHHHHH---------HSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCCC-CHHHHHHhhcc---------cCCcCHHHHHHHHHHHHHHHHHcC
Confidence 566778888888887 55556663321 112555677777777777776654
No 8
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=11.39 E-value=1.2e+02 Score=23.26 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH
Q 046046 160 YLYGIYNHDVELRVS 174 (177)
Q Consensus 160 ~L~D~ff~DmE~RlR 174 (177)
..||.||+|+-++|.
T Consensus 93 k~YD~mFeDIR~kL~ 107 (125)
T 2k4v_A 93 KEYDAMFEDIRAKLH 107 (125)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 789999999998875
No 9
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=10.19 E-value=2.1e+02 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=22.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHhh
Q 046046 123 FNLEKTFRMTFSLLVLHMWFCLRRLKE 149 (177)
Q Consensus 123 ~glPDTF~gwF~m~~LHvWLllvRLRa 149 (177)
..+++.|+.|..+..|+-+|....|=.
T Consensus 245 ~pl~~~~~~R~~ly~ly~~l~h~~~fg 271 (288)
T 3f7w_A 245 APLAEGWRARIPLHQLHPLLVHVCLFG 271 (288)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 348899999999999998888777643
No 10
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=10.14 E-value=2.5e+02 Score=21.90 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHhhhcccchhhhhHHHH---HHHHHHhccchhhhhhcCCCCchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q 046046 87 LKLMLFYSKQSKSIRGANVI---YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYG 163 (177)
Q Consensus 87 ~kl~g~~~k~s~~~raa~~L---Y~~ivaqar~p~fY~~~glPDTF~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L~D 163 (177)
..+.+|+.....+.++++.| -+.||+++..-.| .++ |++++ +.|..+.+.-.+
T Consensus 25 ~~l~~~~~~~~~Rl~aa~~l~~na~~IV~~A~~~~~-~~~--P~l~~---------------------~gg~~y~~~~~~ 80 (172)
T 3l0f_B 25 DALSNLVKEGNKRLDAVNRITSNASTIVANAARALF-AEQ--PQLIQ---------------------PGGNAYTNRRMA 80 (172)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHC--GGGTS---------------------TTSTTCSHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHC--cCCCC---------------------CCCCCCcHHHHH
Confidence 34667877777777776655 6677777765443 222 44322 223444445567
Q ss_pred HHHHHHHHHHH
Q 046046 164 IYNHDVELRVS 174 (177)
Q Consensus 164 ~ff~DmE~RlR 174 (177)
.-+.|++.-||
T Consensus 81 ~C~RD~~~~LR 91 (172)
T 3l0f_B 81 ACLRDMEIILR 91 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777665
Done!