Query 046046
Match_columns 177
No_of_seqs 129 out of 230
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046046.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046046hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b8da_ a.1.1.3 (A:) Phycoeryt 20.3 41 0.003 24.4 3.6 63 88-174 26-91 (164)
2 d1y6da_ a.24.10.5 (A:) Phospho 18.4 52 0.0038 21.0 3.5 23 154-176 19-41 (114)
3 d1dlwa_ a.1.1.1 (A:) Protozoan 12.2 1E+02 0.0076 19.6 3.7 22 156-177 72-93 (116)
4 d1yvia1 a.24.10.2 (A:2-143) Hi 11.6 95 0.0069 21.0 3.5 31 145-176 30-60 (142)
5 d2io8a3 d.142.1.8 (A:201-378,A 10.1 77 0.0056 25.3 2.8 32 100-131 64-99 (297)
6 d1ynha1 d.126.1.7 (A:3-441) Su 9.5 37 0.0027 28.8 0.5 26 33-58 106-135 (439)
7 d1zh5a1 a.4.5.46 (A:5-103) Lup 8.7 45 0.0033 22.3 0.6 53 104-161 7-68 (99)
8 d1su3a1 a.20.1.2 (A:32-98) Fib 8.6 44 0.0032 20.7 0.5 16 108-127 50-65 (67)
9 d1h3la_ a.177.1.1 (A:) Sigma f 8.1 1.3E+02 0.0097 17.5 2.8 31 140-170 20-50 (75)
10 d1allb_ a.1.1.3 (B:) Allophyco 8.1 1.6E+02 0.012 20.8 3.7 62 88-174 26-90 (161)
No 1
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]}
Probab=20.27 E-value=41 Score=24.38 Aligned_cols=63 Identities=6% Similarity=-0.005 Sum_probs=41.9
Q ss_pred HHHhhhcccchhhhhHHHH---HHHHHHhccchhhhhhcCCCCchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Q 046046 88 KLMLFYSKQSKSIRGANVI---YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGI 164 (177)
Q Consensus 88 kl~g~~~k~s~~~raa~~L---Y~~ivaqar~p~fY~~~glPDTF~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L~D~ 164 (177)
.+-+|+.....+.++++.| ...||+++..-.|=+. |+.+ ...|..+.+.-.+.
T Consensus 26 ~l~~~~~~~~~Rl~aa~~L~~na~~IV~~A~~~l~~~~---P~l~---------------------~~gg~~y~~~r~~~ 81 (164)
T d1b8da_ 26 SIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKY---SYLK---------------------NAGEAGDSPEKINK 81 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGG---------------------STTSTTSSHHHHHH
T ss_pred HHHHHHHchHHhHHHHHHHHHhHHHHHHHHHHHHHHHC---cCCC---------------------CCCCCcccHHHHHH
Confidence 4557777777777788777 8889988876555322 2211 22355566777788
Q ss_pred HHHHHHHHHH
Q 046046 165 YNHDVELRVS 174 (177)
Q Consensus 165 ff~DmE~RlR 174 (177)
-|.|+++=||
T Consensus 82 C~RD~~~~LR 91 (164)
T d1b8da_ 82 CYRDIDHYMR 91 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887776
No 2
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}
Probab=18.35 E-value=52 Score=21.01 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 046046 154 GVELGQYLYGIYNHDVELRVSKA 176 (177)
Q Consensus 154 G~~l~Q~L~D~ff~DmE~RlRe~ 176 (177)
|.+..+.|++.|..+++.++.++
T Consensus 19 G~e~~~~ll~~F~~~~~~~~~~L 41 (114)
T d1y6da_ 19 GSDNVPVLLDIFLGEMDSYIGTL 41 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777899999999999998764
No 3
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=12.22 E-value=1e+02 Score=19.63 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 046046 156 ELGQYLYGIYNHDVELRVSKAG 177 (177)
Q Consensus 156 ~l~Q~L~D~ff~DmE~RlRe~G 177 (177)
.+...-||.+-..+...+++.|
T Consensus 72 ~I~~~~fd~~~~~l~~al~e~~ 93 (116)
T d1dlwa_ 72 GVSNAQFTTVIGHLRSALTGAG 93 (116)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcC
Confidence 3566778888888888877765
No 4
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=11.61 E-value=95 Score=20.98 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=21.4
Q ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHhc
Q 046046 145 RRLKEEGKEGVELGQYLYGIYNHDVELRVSKA 176 (177)
Q Consensus 145 vRLRaeg~~G~~l~Q~L~D~ff~DmE~RlRe~ 176 (177)
..|..++. +..+.+.|++.|..|++..|.++
T Consensus 30 ~~l~~~~~-~~~fl~eli~~Fl~~~~~~l~~l 60 (142)
T d1yvia1 30 QMLQDEGG-TPGFVSEVVTLFCDDADRIINEI 60 (142)
T ss_dssp HHHHC----CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 46788899999999999887654
No 5
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]}
Probab=10.10 E-value=77 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHhcc----chhhhhhcCCCCchhh
Q 046046 100 IRGANVIYKRVVSQVD----KPAIYDVFNLEKTFRM 131 (177)
Q Consensus 100 ~raa~~LY~~ivaqar----~p~fY~~~glPDTF~g 131 (177)
.++++.|+..|++.++ .+.++..||+|..+..
T Consensus 64 ~~at~ELh~m~l~a~~~vv~~~~ll~~lgIP~~~~~ 99 (297)
T d2io8a3 64 IKATNELHLMYLHATDKVLKDDNLLALFDIPKILWP 99 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHGGGCCCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHcCCCHHHHH
Confidence 4678899999988653 5678999999997743
No 6
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase {Escherichia coli [TaxId: 562]}
Probab=9.50 E-value=37 Score=28.83 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.6
Q ss_pred HhhhcccCCCCCCCcc----chhccchhhh
Q 046046 33 TAAAASVEPAPRPTKQ----LVVSLDKMFW 58 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~~----~~~~l~~~~~ 58 (177)
+|-||+|+|+++..+. -+-||+.|||
T Consensus 106 tANAATVsPSaDt~DgrvHfTpANL~~~~H 135 (439)
T d1ynha1 106 VANAATIAPSADTLDGKVHLTVANLNNKFH 135 (439)
T ss_dssp GGGTEEEECTTTBSSSSEEEEECCCTTSHH
T ss_pred HhccceecCCCcCCCCcEEeechhhccccc
Confidence 4678999999988875 6778888888
No 7
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.74 E-value=45 Score=22.32 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccchhhhhhcCCC-Cch--------hhHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Q 046046 104 NVIYKRVVSQVDKPAIYDVFNLE-KTF--------RMTFSLLVLHMWFCLRRLKEEGKEGVELGQYL 161 (177)
Q Consensus 104 ~~LY~~ivaqar~p~fY~~~glP-DTF--------~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L 161 (177)
..|.+.|..|+.+ +|.+-+|+ |.| +|| +-|.+.+=+.|+|+...+...+.++|
T Consensus 7 ~~l~~~I~~QvEf--YFSd~NL~~D~fL~~~m~~~eG~---Vpl~~i~~F~r~k~l~~~~~~i~~Al 68 (99)
T d1zh5a1 7 AALEAKICHQIEY--YFGDFNLPRDKFLKEQIKLDEGW---VPLEIMIKFNRLNRLTTDFNVIVEAL 68 (99)
T ss_dssp HHHHHHHHHHHHH--HTSTTTGGGCHHHHHHHTTTTTC---EEHHHHTTSHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hcCHhhhccCHHHHHHHhcCCCc---ccHHHHhcchHHHHHcCCHHHHHHHH
Confidence 3566777777653 33444444 222 566 56777788899999877655555554
No 8
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.64 E-value=44 Score=20.75 Aligned_cols=16 Identities=6% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHhccchhhhhhcCCCC
Q 046046 108 KRVVSQVDKPAIYDVFNLEK 127 (177)
Q Consensus 108 ~~ivaqar~p~fY~~~glPD 127 (177)
...++....| +|||||
T Consensus 50 ~~T~~~M~~P----RCGvpD 65 (67)
T d1su3a1 50 AETLKVMKQP----RCGVPD 65 (67)
T ss_dssp HHHHHHHTSC----BCSSCS
T ss_pred HHHHHHHCCC----CCCCCC
Confidence 3444555555 788888
No 9
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=8.10 E-value=1.3e+02 Score=17.55 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=21.2
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
Q 046046 140 MWFCLRRLKEEGKEGVELGQYLYGIYNHDVE 170 (177)
Q Consensus 140 vWLllvRLRaeg~~G~~l~Q~L~D~ff~DmE 170 (177)
++-+..|+=....++.++.|++|-.+|...+
T Consensus 20 l~~~~~~~~~d~~~aeDivQd~f~~~~~~~~ 50 (75)
T d1h3la_ 20 MYSAALRMTRNPADAEDLVQETYAKAYASFH 50 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh
Confidence 3344555555566788899998888887654
No 10
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=8.07 E-value=1.6e+02 Score=20.81 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHhhhcccchhhhhHHHH---HHHHHHhccchhhhhhcCCCCchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Q 046046 88 KLMLFYSKQSKSIRGANVI---YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGI 164 (177)
Q Consensus 88 kl~g~~~k~s~~~raa~~L---Y~~ivaqar~p~fY~~~glPDTF~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L~D~ 164 (177)
.+-+|+.....+.++++.| -+.||++|..--|. -|+.. + +.|..+.+.=.+.
T Consensus 26 ~l~~~~~~~~~Rl~aa~~L~~na~~Iv~~A~~~~~~----~p~~~-------------------~--pgG~~y~~~r~~a 80 (161)
T d1allb_ 26 KLKAYFATGELRVRAATTISANAANIVKEAVAKSLL----YSDVT-------------------R--PGGNMYTTRRYAA 80 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TSTTT-------------------S--TTSTTCSHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHhhhh----hhhcc-------------------C--CCCCCCChHHHHH
Confidence 4557777777777777777 78888888654441 12211 1 1233344555667
Q ss_pred HHHHHHHHHH
Q 046046 165 YNHDVELRVS 174 (177)
Q Consensus 165 ff~DmE~RlR 174 (177)
-|.|+++=||
T Consensus 81 C~RD~~~~LR 90 (161)
T d1allb_ 81 CIRDLDYYLR 90 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887776
Done!