BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046048
         (414 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
 pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
          Length = 397

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 36/244 (14%)

Query: 203 LLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELF-------CTVPVINMKRADLNTRAE 255
           +L + +G +  D+ S+AS   Y++   +  E             VP+I++ R DL+ R +
Sbjct: 28  VLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRD 87

Query: 256 LKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKL--VLINGHKLPTRQEALKDAVVEIFN 313
           + ++L   +I    L F++++     ++    +L   L++ +  P   +   D VV I +
Sbjct: 88  VMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIID 147

Query: 314 CRKDCS--------------CCTVVAENFALTSPQ--ILAGQGFSRILLAGILLDTGNLT 357
              D                 C+ +  N+     Q         + +L+  IL+DT N+ 
Sbjct: 148 HHFDLQKHLDAEPRIVKVSGSCSSLVFNYWYEKLQGDREVVMNIAPLLMGAILIDTSNM- 206

Query: 358 NTRCTSKDKYM----ATLLINGAGRFGCNGL------YQILRYLMYDVSDLKVVDILRKD 407
             +    DK        +L          GL      Y+ ++    D+    V DIL+KD
Sbjct: 207 RRKVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKEIKSRKNDIKGFSVSDILKKD 266

Query: 408 FKKW 411
           +K++
Sbjct: 267 YKQF 270


>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain
          Length = 192

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 11/53 (20%)

Query: 291 LINGHKLPTRQEALKDAVVEIFNCRKD------CSCCTVVAENFALTSPQILA 337
           +ING  +PTR EA KD V  IFN + +      C   T+        SPQ+L+
Sbjct: 15  MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTI-----GDNSPQVLS 62


>pdb|3V03|A Chain A, Crystal Structure Of Bovine Serum Albumin
 pdb|3V03|B Chain B, Crystal Structure Of Bovine Serum Albumin
 pdb|4F5S|A Chain A, Crystal Structure Of Bovine Serum Albumin
 pdb|4F5S|B Chain B, Crystal Structure Of Bovine Serum Albumin
          Length = 583

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 165 YNGFSPQMEIVESCESINRLNSYLK-ARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTF 222
           ++ +  Q    E  + +N L  + K    DE  AG   + LH + G ++C V SL  T+
Sbjct: 27  FSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGC-EKSLHTLFGDELCKVASLRETY 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,318,291
Number of Sequences: 62578
Number of extensions: 518078
Number of successful extensions: 964
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 4
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)