Query 046048
Match_columns 414
No_of_seqs 193 out of 1149
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4129 Exopolyphosphatases an 100.0 1.7E-43 3.8E-48 349.5 17.0 228 185-414 2-250 (377)
2 PRK05427 putative manganese-de 100.0 2.8E-34 6E-39 285.4 21.8 189 204-413 3-208 (308)
3 COG1227 PPX1 Inorganic pyropho 100.0 6.5E-34 1.4E-38 280.3 17.8 192 204-414 3-211 (311)
4 PRK14869 putative manganese-de 99.9 9.9E-23 2.1E-27 216.0 20.0 125 286-413 304-445 (546)
5 PRK14538 putative bifunctional 99.9 3.3E-21 7.2E-26 213.0 18.7 195 161-376 334-555 (838)
6 COG3887 Predicted signaling pr 99.9 2.7E-21 5.8E-26 202.9 13.4 188 164-375 307-521 (655)
7 COG0618 Exopolyphosphatase-rel 99.8 4.3E-19 9.3E-24 178.4 17.1 153 204-374 18-188 (332)
8 PF01368 DHH: DHH family; Int 99.6 4.8E-15 1E-19 129.4 11.4 134 204-350 7-145 (145)
9 TIGR00644 recJ single-stranded 98.2 8.1E-05 1.8E-09 80.0 17.6 142 204-357 56-214 (539)
10 cd04597 CBS_pair_DRTGG_assoc2 97.4 0.00026 5.6E-09 59.8 5.8 53 211-271 1-53 (113)
11 COG0608 RecJ Single-stranded D 96.4 0.051 1.1E-06 57.9 13.8 133 204-358 38-187 (491)
12 PRK11070 ssDNA exonuclease Rec 96.2 0.17 3.7E-06 55.3 16.7 102 204-316 71-177 (575)
13 COG2404 Predicted phosphohydro 87.4 1.3 2.7E-05 45.6 6.1 111 206-331 3-127 (339)
14 PF02724 CDC45: CDC45-like pro 81.4 7.8 0.00017 43.0 9.4 95 212-316 7-106 (622)
15 PF07279 DUF1442: Protein of u 73.2 20 0.00042 35.0 8.4 91 195-298 36-127 (218)
16 COG1107 Archaea-specific RecJ- 68.8 13 0.00029 41.0 6.8 22 205-228 346-367 (715)
17 KOG2475 CDC45 (cell division c 64.3 62 0.0013 35.5 10.7 93 213-315 32-128 (587)
18 PF10079 DUF2317: Uncharacteri 57.8 19 0.0004 39.5 5.6 52 202-258 84-143 (542)
19 PF04522 DUF585: Protein of un 36.0 27 0.00058 34.2 2.3 38 312-349 74-112 (248)
20 KOG0098 GTPase Rab2, small G p 33.9 43 0.00094 32.3 3.3 51 162-218 73-126 (216)
21 KOG0086 GTPase Rab4, small G p 23.9 69 0.0015 30.1 2.7 52 160-217 74-128 (214)
22 KOG0091 GTPase Rab39, small G 20.2 1.3E+02 0.0029 28.6 3.8 38 177-217 93-130 (213)
No 1
>KOG4129 consensus Exopolyphosphatases and related proteins [Energy production and conversion]
Probab=100.00 E-value=1.7e-43 Score=349.51 Aligned_cols=228 Identities=29% Similarity=0.476 Sum_probs=195.3
Q ss_pred HHHHHHhhhhhhcCC-CCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHC
Q 046048 185 NSYLKARKDEVSAGV-PGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSC 263 (414)
Q Consensus 185 ~~fL~~~k~~~~a~~-~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~ 263 (414)
.+||..++..+.... .+.++++|+||++||+||++|||+|||++.+..+ ....++|++||||.++.+++|+.++++++
T Consensus 2 lrfl~~~r~~l~ksl~~~~~lhiv~GNEScDLDS~iSaltyAy~l~~~~~-~e~~~vPilnIpR~el~lr~ei~~vl~kl 80 (377)
T KOG4129|consen 2 LRFLQKARFQLNKSLILHGKLHIVMGNESCDLDSFISALTYAYCLDKVHR-KEVFMVPILNIPRFELNLRTEIFYVLEKL 80 (377)
T ss_pred hhHHHHHHHHHHHhhhcCCceEEEeCCccccHHHHHHHHHHHHHHHHhcc-CCceEEEEeccccccCCcchhHHHHHHHc
Confidence 356666655543322 2356999999999999999999999999988754 35689999999999999999999999999
Q ss_pred CCCCCCcccccccccccccccCCceEEEEeCCCCCcchHhhh-cCceEEEccCC---------------cCCHHHHHHHH
Q 046048 264 QIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALK-DAVVEIFNCRK---------------DCSCCTVVAEN 327 (414)
Q Consensus 264 ~I~~~~LIF~dD~~l~~l~~~~~~~vILVDHh~l~~~~~~l~-~~Vv~IIDHH~---------------vGSc~TLVae~ 327 (414)
+|.++.++|.||++...++..++++++|||||.++..+..+. ..+..|||||+ .|||||||+++
T Consensus 81 ~Ise~~l~FrdDI~~~~~~~~g~l~~~LVDhn~l~~~d~~~e~~~i~~IiDhhp~e~~~~~a~~~~Ie~~gScsTLV~~y 160 (377)
T KOG4129|consen 81 HISESALIFRDDIELLELNISGKLKLYLVDHNVLPSKDLVNEIAVIEGIIDHHPDEDKHLPACPRIIELSGSCSTLVSRY 160 (377)
T ss_pred CCChHHeeehhhhhcccccccCCceEEEecCCCCccccccccccceeeeeccCcccccCCCccceeEEeecchHHHHHHH
Confidence 999999999999988777777889999999999996544443 45677889986 88999999999
Q ss_pred HHhcCCCccccHH--HHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHhhcCCCCCHHHH
Q 046048 328 FALTSPQILAGQG--FSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGA--GRFGCNGLYQILRYLMYDVSDLKVVDI 403 (414)
Q Consensus 328 i~~~~~e~~i~~~--iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ga--~~~~~~~lf~~L~~AK~Dis~LS~~dl 403 (414)
|.+..++. .+.. +|.+|+++|++||+||+..++++.|.++...|+... +.+.|+++|++|+.||+|++|||++|+
T Consensus 161 ~l~~~~~~-~~~~~n~A~LL~g~ILiDt~nm~~ek~s~kd~~~v~kLe~~~p~~l~~r~~~fd~Lk~ak~d~sgls~~~i 239 (377)
T KOG4129|consen 161 ILEELQEL-NTRQANLARLLLGPILIDTGNMRKEKTSPKDVEIVKKLEELFPVKLPERSEFFDELKSAKFDISGLSTDDI 239 (377)
T ss_pred HHhhcchh-hhHHHHHHHHhhcceEEeccccccccCChhHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcccccCcHHHH
Confidence 98876554 3343 999999999999999998899999999999997764 467899999999999999999999999
Q ss_pred HHccccccccC
Q 046048 404 LRKDFKKWKTA 414 (414)
Q Consensus 404 LrkDYK~f~~g 414 (414)
||||||+|..+
T Consensus 240 LrKD~K~~~~~ 250 (377)
T KOG4129|consen 240 LRKDLKQFHYD 250 (377)
T ss_pred HHHHHHHhccC
Confidence 99999999753
No 2
>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=2.8e-34 Score=285.41 Aligned_cols=189 Identities=19% Similarity=0.249 Sum_probs=158.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDL 283 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~~ 283 (414)
.++|+||++||+||||||+||++++++.|+. ++|+.. ..+.++..+++..+++..+.++. ++
T Consensus 3 ~i~V~gH~nPD~DaigSalala~~l~~~g~~----~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~--~~------- 64 (308)
T PRK05427 3 KILVFGHKNPDTDSICSAIAYAYLKKALGLD----AEAVRL-----GEPNPETAFVLDYFGVEAPELIT--SV------- 64 (308)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHHHhCCc----eEEEEC-----CCCCHHHHHHHHHcCCCChhHHh--hc-------
Confidence 5899999999999999999999999988863 334321 25778999999999987555431 11
Q ss_pred cCCceEEEEeCCCCCcchHhh-hcCceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHH
Q 046048 284 FGSLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRILL 346 (414)
Q Consensus 284 ~~~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLL 346 (414)
.....+||||||...+....+ ..++++|||||+ +|||||||++++++.+.. +++.+|+|||
T Consensus 65 ~~~~~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~~~~~~p~~~~~~~~gSt~tiv~~~~~~~~~~--i~~~iA~~L~ 142 (308)
T PRK05427 65 AGEVQVILVDHNEFQQSPDDIDEATVVGVVDHHRLGNFETSNPLYYRIEPVGCTATILYKMFKENGVE--IPKEIAGLML 142 (308)
T ss_pred ccCCeEEEEeCCCcccCcchhcccCEEEEECCCcCCCCCCCCceEEEEeeeccHHHHHHHHHHhcCCC--CCHHHHHHHH
Confidence 112379999999988744344 356889999996 999999999999887643 6789999999
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHcccccccc
Q 046048 347 AGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKT 413 (414)
Q Consensus 347 aGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~~ 413 (414)
+||++||+||++++||++|+++|++|.+.+|. ++++++++|.++|.++++++..+||++|||+|+.
T Consensus 143 ~gIltDT~~F~~~~tt~~d~~~a~~L~~~~g~-d~~~~~~~l~~~~s~~~~~s~~~ll~~dlk~f~~ 208 (308)
T PRK05427 143 SAILSDTLLFKSPTTTEQDKAAAEELAEIAGV-DIEAYGLEMLKAKSDVSGKSAEELIDMDAKEFEM 208 (308)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHhcCCccCCCHHHHHHhcCeeeee
Confidence 99999999999999999999999999876665 9999999999999999999999999999999965
No 3
>COG1227 PPX1 Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]
Probab=100.00 E-value=6.5e-34 Score=280.35 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=165.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDL 283 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~~ 283 (414)
+++|+||++||.|||+|||+|||+++..+. ..+|...+++. +.|..++|...+.+.+.++-. +
T Consensus 3 ~~~v~Gh~npDtDsi~Sai~~ay~~~~~~~----~~~~~~~l~~~----~~et~fvl~~f~~~~p~l~~~--~------- 65 (311)
T COG1227 3 KILVVGHENPDTDSIASAIVYAYLLNAYGE----FEAKAVRLGEP----NLETAFVLDYFGVEAPKLVES--V------- 65 (311)
T ss_pred cEEEecCCCccHHHHHHHHHHHHHHHHhhh----ccCCceecCCC----ChhHHHHHHHhccCCchhhhc--c-------
Confidence 689999999999999999999999987653 23444444433 348888888888887776432 1
Q ss_pred cCCceEEEEeCCCCCcchHhhhc-CceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHH
Q 046048 284 FGSLKLVLINGHKLPTRQEALKD-AVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRILL 346 (414)
Q Consensus 284 ~~~~~vILVDHh~l~~~~~~l~~-~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLL 346 (414)
....+++|||||..++....+.+ .|.+|||||+ +|||+|+|+++|.+.+.+ +++++|.|||
T Consensus 66 ~~~~~viLVDhNe~~qs~~~~~d~~I~~IIDHHr~~~~~t~~p~~~~~epVGctsTIv~~~~~e~~~~--~~~~iA~LlL 143 (311)
T COG1227 66 KGEKKVILVDHNEFQQSVDDIEDAEILGIIDHHRLADFETAAPLYIRNEPVGCTSTIVYRLFKEDGIE--IEKEIAGLLL 143 (311)
T ss_pred cCCCcEEEEeccccccCccccccceEEEEeeeeeecCcccCCCcEEEecCCchHHHHHHHHHHHhcCc--cchhHHHHHH
Confidence 12368999999999998777754 5999999996 999999999999888754 5689999999
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHccccccccC
Q 046048 347 AGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA 414 (414)
Q Consensus 347 aGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~~g 414 (414)
+||++||++|+.++||..|..+|..|...+|..++++|+.+|..|+.|++++++++||++|||+|.+|
T Consensus 144 saIlsDTl~fkspTtt~~D~~~a~~La~lAgv~dlekf~~~ml~a~~~~~~~s~~eLl~~D~K~F~~~ 211 (311)
T COG1227 144 SAILSDTLLFKSPTTTDTDVDIAKELADLAGVKDLEKFGKELLKAGTDLSGKSVEELLKKDLKAFNMN 211 (311)
T ss_pred HHHhhhhhcccCCCcchhHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCCCCHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999875
No 4
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.90 E-value=9.9e-23 Score=216.00 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=110.3
Q ss_pred CceEEEEeCCCCCcchHhh-hcCceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 046048 286 SLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRILLAG 348 (414)
Q Consensus 286 ~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLLaG 348 (414)
+.+++|||||...+....+ ...+++|||||+ +|||||+|++++.+.+.+ +++.+|++||+|
T Consensus 304 ~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~--~~~~ia~~ll~g 381 (546)
T PRK14869 304 RKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIE--PSPEIAGLLLAA 381 (546)
T ss_pred cCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence 3578899999887754444 346789999996 799999999999887643 567899999999
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHcccccccc
Q 046048 349 ILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKT 413 (414)
Q Consensus 349 ILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~~ 413 (414)
|++||++|++++||++|+++|++|...+|. ++++++++|.+++.++++++..++|++|||.|+.
T Consensus 382 IlsDT~~f~~~~tt~~d~~~a~~L~~~~g~-~~~~~~~~l~~~~~~~~~~~~~~~l~~d~K~~~~ 445 (546)
T PRK14869 382 ILSDTLLFKSPTTTELDREAAEWLAEIAGI-DPEEFAKEMFKAGSSLEGKTPEEIFNRDFKEFTI 445 (546)
T ss_pred HHHHhcCccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCCcCCCCHHHHHHhcCeeeee
Confidence 999999999999999999999999986664 8999999999999999999999999999999974
No 5
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=99.87 E-value=3.3e-21 Score=213.02 Aligned_cols=195 Identities=15% Similarity=0.172 Sum_probs=125.8
Q ss_pred ccccccCCCchh---hhhhhhhhHHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCce
Q 046048 161 AASFYNGFSPQM---EIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELF 237 (414)
Q Consensus 161 ~a~~~~~~~p~~---~~~~s~~~i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~ 237 (414)
-..||-|-+..+ .=+...--.+.|.+.+++.. .++|+||.+||+||+|||+|++.+++++++. ..
T Consensus 334 ~~~fyGGks~~~eKrtrVraRvia~~L~elI~~~d-----------~ViI~gH~nPD~DAlGSalaL~~~lk~l~~~-k~ 401 (838)
T PRK14538 334 KIKYFGAKIASLSKQSKVNARVNAQNLVDILKKNP-----------HCFIMGHNHTDLDSLGSMIAFYKIALTIHPD-NN 401 (838)
T ss_pred CceEeCCCCCcccchhhHHHHHHHHHHHHHHhcCC-----------eEEEEecCCCCchHHHHHHHHHHHHHHhCCC-Ce
Confidence 355776665544 11112222345666665554 7999999999999999999999999887642 22
Q ss_pred EEEEeeecccccccCcHHHHHHHHHCC--CC--CCCcccccccccccccccCCceEEEEeCCCCCc--chHhh-hcCceE
Q 046048 238 CTVPVINMKRADLNTRAELKWLLGSCQ--ID--LSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPT--RQEAL-KDAVVE 310 (414)
Q Consensus 238 ~~vPvinmpr~dl~lr~E~~~lL~~~~--I~--~~~LIF~dD~~l~~l~~~~~~~vILVDHh~l~~--~~~~l-~~~Vv~ 310 (414)
+++ +++- ....+.+.+++..+. .+ ...++..++.. .. ......+|+||+|.+.. ....+ ....+.
T Consensus 402 ~~i-v~~~----~~~~~~i~~~~~~l~~~~~~~~~~~i~~~~a~--~~-~~~~~llIvVDts~~~Ri~~~~l~~~~~~iI 473 (838)
T PRK14538 402 NYI-ILDE----EKLDKSLTPVYHQLIKQEHKVTLNIITTQQAS--KM-IKKNDLIAVLDTQTKDIVNSPELLSLTNNII 473 (838)
T ss_pred EEE-EEcC----CCcchhHHHHHhhhhcccchhhhcccCHhhhh--hc-cccCCEEEEecCCChHhcCChhhhhcCCCEE
Confidence 333 2211 122333444443221 00 11122222210 00 11345688899998763 22222 234577
Q ss_pred EEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHh
Q 046048 311 IFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLIN 374 (414)
Q Consensus 311 IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ 374 (414)
|||||+ ++||||||+|+++.++..+.+++.+|++||+||++||++|++ +||++|++||++|.+
T Consensus 474 VIDHHr~~~~~i~~~l~yIep~ASST~ELV~Ell~~~~~~i~l~~~eAt~LyaGI~tDTg~F~~-~Tt~rTFeaAA~L~~ 552 (838)
T PRK14538 474 VIDHHRATEEIIPSIFSYVDSSASSTVELLVELMGFLEKEIHITAFEASIMYAGILIDTNAFIY-RTSSRTFEVASKLKD 552 (838)
T ss_pred EEeCCCCCCCCCCccEEEEEcCcCcHHHHHHHHHHHcCCCCCCCHHHHHHHHhHHHHHcCCccc-CCCHHHHHHHHHHHH
Confidence 899996 889999999999766544447789999999999999999999 799999999999976
Q ss_pred -hc
Q 046048 375 -GA 376 (414)
Q Consensus 375 -ga 376 (414)
|+
T Consensus 553 ~GA 555 (838)
T PRK14538 553 LGA 555 (838)
T ss_pred cCC
Confidence 44
No 6
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-21 Score=202.92 Aligned_cols=188 Identities=21% Similarity=0.260 Sum_probs=132.8
Q ss_pred cccCCCchh-hh--hhhhhhHHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEE
Q 046048 164 FYNGFSPQM-EI--VESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTV 240 (414)
Q Consensus 164 ~~~~~~p~~-~~--~~s~~~i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~v 240 (414)
||-|.+-.| +- .+...=...|.+.++... .++|+||+.||+||+|||+|++.++...+++ ..+
T Consensus 307 fyGG~s~~~ekrTRvRaRvis~al~d~i~e~d-----------~VfImGHk~pDmDalGsAig~~~~A~~~~~~-a~~-- 372 (655)
T COG3887 307 FYGGKSNPMEKRTRVRARVISTALSDIIKESD-----------NVFIMGHKFPDMDALGSAIGMQKFASMNNKE-AFA-- 372 (655)
T ss_pred eeCCCcchhHHhHHHHHHHHHHHHHHHHhhcC-----------cEEEEccCCCChHHHHHHHHHHHHHHhcccc-cEE--
Confidence 777776555 11 111111255666666655 7999999999999999999999999988773 322
Q ss_pred EeeecccccccCcHHHHHHHHHCCCC---CCCcccccccccccccc-cCCceEEEEeCCCCCcc--hHhhh-cCceEEEc
Q 046048 241 PVINMKRADLNTRAELKWLLGSCQID---LSSLIFVDEIDLSYYDL-FGSLKLVLINGHKLPTR--QEALK-DAVVEIFN 313 (414)
Q Consensus 241 Pvinmpr~dl~lr~E~~~lL~~~~I~---~~~LIF~dD~~l~~l~~-~~~~~vILVDHh~l~~~--~~~l~-~~Vv~IID 313 (414)
|++ .-...+++..+.+...-. ...+|..++. ++. ..+.-+|+||||++... .+.+. -.-+.|||
T Consensus 373 -v~d----p~~~~pdveRai~~i~~~~e~~~~fit~~~A----~~l~t~~sLLviVDt~k~s~vl~~~~~~~~~kvVViD 443 (655)
T COG3887 373 -VLD----PEDMSPDVERAINEIEKNSEGKTRFITPSDA----MELSTERSLLVIVDTHKPSLVLNEEFLDKFEKVVVID 443 (655)
T ss_pred -EEC----ccccChhHHHHHHHHHhcchhhheeccHHHH----hhccCCCcEEEEEecCCcceecCHHHHHhhceEEEEe
Confidence 332 124567777766654332 1345554442 333 46788999999998752 22232 12367899
Q ss_pred cCC-----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhh
Q 046048 314 CRK-----------------DCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLING 375 (414)
Q Consensus 314 HH~-----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~g 375 (414)
||+ ++||++||+|+++-...+..+.+-.|+.||+||++||.||+. +|+.|+++||++|...
T Consensus 444 HHRR~e~f~~n~~l~YiEsyASStsELVTEliqyq~~~~kl~~ieAt~LlAGI~vDTKnFt~-rTgsRTFdAAsyLRs~ 521 (655)
T COG3887 444 HHRRDEDFISNPLLVYIESYASSTSELVTELIQYQPKKQKLSPIEATALLAGIIVDTKNFTL-RTGSRTFDAASYLRSR 521 (655)
T ss_pred ccccccccccchHHhhhccCcccHHHHHHHHHHhCchhccccHHHHHHHHhceEEeccccee-ecccceehHHHHHHhc
Confidence 997 999999999999765433346777899999999999999996 9999999999999653
No 7
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=99.81 E-value=4.3e-19 Score=178.39 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=106.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDL 283 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~~ 283 (414)
.++|++|.+||+||+||++||+.+++..+++...+++ = -..++|...++...++.....+- ++.
T Consensus 18 ~i~i~~H~nPD~DalgSa~aL~~ll~~~~~~~~v~~~--G------~~~~~e~~~~~~~~~~~~~~~~~-~~~------- 81 (332)
T COG0618 18 KILILTHENPDPDALGSALALAELLKDLGKNKEVLYV--G------PITHPENRAFLNLLGDELERIED-DPL------- 81 (332)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHhCCCceEEEe--c------ccCCcchHhhhhhcccccccccC-CCc-------
Confidence 7999999999999999999999999999873222221 1 12356666666665554432211 000
Q ss_pred cCCceEEEEeCCCCCcchH--hhh-cCceEEEccCC---------------cCCHHHHHHHHHHhcCCCccccHHHHHHH
Q 046048 284 FGSLKLVLINGHKLPTRQE--ALK-DAVVEIFNCRK---------------DCSCCTVVAENFALTSPQILAGQGFSRIL 345 (414)
Q Consensus 284 ~~~~~vILVDHh~l~~~~~--~l~-~~Vv~IIDHH~---------------vGSc~TLVae~i~~~~~e~~i~~~iAtLL 345 (414)
....-+++||++..+.... ... .+.+.+||||+ ++||||||++++++++.. +++.+|++|
T Consensus 82 ~~~~~~iivDt~~~~ri~~~~~~~~~~~~ivIDHH~~~~~~~~~~~~i~~~~~ataeii~~~~~~~~~~--~~~~~At~L 159 (332)
T COG0618 82 DDYDLVIIVDTANLPRIGDQELLLDSKKVIVIDHHPGNNDIYGDFVWIDPSAGATAEIIAELLKEAGID--LDPLVATAL 159 (332)
T ss_pred ccCCEEEEECCCCCCCcccccccccCCceEEEeCCCCCCCCCCceEEeCCCCchHHHHHHHHHHHcCCC--ccHHHHHHH
Confidence 1223456666655443211 111 14555666665 899999999999998744 456799999
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHh
Q 046048 346 LAGILLDTGNLTNTRCTSKDKYMATLLIN 374 (414)
Q Consensus 346 LaGILtDT~NF~~~ktT~~D~~aA~~L~~ 374 (414)
|+||.+|||+|++.+++++++.+|.+|..
T Consensus 160 ~~GI~tDTg~F~~~~t~~~~~~~a~~L~~ 188 (332)
T COG0618 160 LLGIRTDTGRFRYANTTADTLAAAALLVE 188 (332)
T ss_pred HhhhhhcccccccCCCChhHHHHHHHHHh
Confidence 99999999999999999999999988854
No 8
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=99.61 E-value=4.8e-15 Score=129.36 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=83.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccccc-ccc--
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEID-LSY-- 280 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~-l~~-- 280 (414)
.++|+||.+||+|+++|++++++++.+.++. ...++.-. .....+.........+....++.+ |.. .+.
T Consensus 7 ~i~i~~H~~~D~Dgl~Sa~~l~~~l~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ii~v-D~~~~~~~~ 78 (145)
T PF01368_consen 7 RILIVGHINPDADGLGSAIALAKILKRLGKE--VTVIPIPE-----GPPHEYFLFVLKYFEMNEDLIILV-DCGSPDRDG 78 (145)
T ss_dssp EEEEEEBSS-SHHHHHHHHHHHHHHHHTTCT--EEEEEECS-----STCGHHHHHHHHHTTHHHSEEEEE-S-SSGGGSG
T ss_pred EEEEEccCCCCchHHHHHHHHHHHHHHcCCC--ceEEecCC-----CCcchhhhhhhhhhcccceEEEEe-cCCccccch
Confidence 7999999999999999999999999998873 22333221 123333333333333323344443 432 111
Q ss_pred --ccccCCceEEEEeCCCCCcchHhhhcCceEEEccCCcCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHH
Q 046048 281 --YDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDCSCCTVVAENFALTSPQILAGQGFSRILLAGIL 350 (414)
Q Consensus 281 --l~~~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~vGSc~TLVae~i~~~~~e~~i~~~iAtLLLaGIL 350 (414)
.......++++||||..++... ....+..++ -.+||||+||++++++.+.+ +++++|++||+||+
T Consensus 79 ~~~~~~~~~~viiiDHH~~~~~~~--~~~~~~~~~-~~~~s~~~lv~~~~~~~~~~--~~~~~a~ll~~Giv 145 (145)
T PF01368_consen 79 EKLEELKGIKVIIIDHHQPGEEDI--NPNDVNYID-ESAGSTSTLVAEMLKELGIK--IDKEIATLLLAGIV 145 (145)
T ss_dssp TTGGGTSCSEEEEEESSSSBSS-----SSCEEEEE-TSSSHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEeCCCCCCcccC--CCCCCCCEe-CcHHHHHHHHHHHHHHcCCC--CcHHHHHHHHhhhC
Confidence 1111237888999997776422 112222333 35999999999999887644 57899999999996
No 9
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=98.16 E-value=8.1e-05 Score=80.03 Aligned_cols=142 Identities=15% Similarity=0.119 Sum_probs=84.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCC-ccccccccccc--
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSS-LIFVDEIDLSY-- 280 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~-LIF~dD~~l~~-- 280 (414)
.++|+||. |.|+|+|+.+|+.+|++.|+ +..+++|-. ++ +.+.+.++... .......+ +|++|--..+.
T Consensus 56 ~I~I~gh~--D~DGi~S~~~L~~~L~~~g~-~v~~~ip~r-~~-~~yg~~~~~i~---~~~~~~~~LiI~vD~G~~~~~~ 127 (539)
T TIGR00644 56 KILIFGDY--DVDGITSTAILVEFLKDLGV-NVDYYIPNR-IT-EGYGLSPEALR---EAIENGVSLIITVDNGISAHEE 127 (539)
T ss_pred eEEEEEcc--CCCcHHHHHHHHHHHHHCCC-ceEEEeCCC-Cc-ccCCCCHHHHH---HHHhcCCCEEEEeCCCcccHHH
Confidence 79999997 88899999999999999987 344555531 11 22344444222 11112224 44443322111
Q ss_pred cc--ccCCceEEEEeCCCCCcchHhhhcCceEEEccCCcC--------CHHHHHHHHHHhcCCCcc----ccHHHHHHHH
Q 046048 281 YD--LFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDC--------SCCTVVAENFALTSPQIL----AGQGFSRILL 346 (414)
Q Consensus 281 l~--~~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~vG--------Sc~TLVae~i~~~~~e~~----i~~~iAtLLL 346 (414)
.. .....++|++|||...+.. .....+|+.+..+ |.|.++|.+++.....+. ...++..+..
T Consensus 128 ~~~~~~~g~~vIviDHH~~~~~~----~~~~~~vnP~~~~~~~p~~~l~gagva~~l~~al~~~~~~~~~~~~~~ldl~a 203 (539)
T TIGR00644 128 IDYAKELGIDVIVTDHHEPPEDL----PEAAAIVNPNRPDCDYPNKELAGAGVAFKLCTALDEELPKLKPDLLDLLDLVA 203 (539)
T ss_pred HHHHHhcCCCEEEECCCCCCCCC----CCccEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 11 1235789999999876532 1223467654422 227788888876532211 1146778888
Q ss_pred HHHHHhhCCCC
Q 046048 347 AGILLDTGNLT 357 (414)
Q Consensus 347 aGILtDT~NF~ 357 (414)
.|.+.|-..+.
T Consensus 204 igtiaD~~~l~ 214 (539)
T TIGR00644 204 IGTIADVMPLT 214 (539)
T ss_pred HHHHHhhCccc
Confidence 89999998885
No 10
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00026 Score=59.79 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=41.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcc
Q 046048 211 DVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLI 271 (414)
Q Consensus 211 espDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LI 271 (414)
+|||.|||+|||+|++++++.+.. .++|.. .-...+|..|+++.+|++.+.++
T Consensus 1 ~~pd~d~i~sai~~~~~~~~~~~~---~~~~~~-----~g~~n~e~~~vl~~~~~~~p~ll 53 (113)
T cd04597 1 RNPDTDSVASAIAYAHLKRRQGMD---NVTAAR-----LGEPNPQTRYVLEYLGIEPPILL 53 (113)
T ss_pred CCCcHHHHHHHHHHHHHHhhcCCC---ceeehh-----cCCCCHHHHHHHHHcCCCCchhh
Confidence 589999999999999999877652 234532 23678999999999999887764
No 11
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.051 Score=57.91 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=75.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCC-CCccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDL-SSLIFVDEIDLSYYD 282 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~-~~LIF~dD~~l~~l~ 282 (414)
.++|+|| -|.|-+.|+-.++.+|.+.|. ....++|-.. .+... .+.....+. +.+||+|-- ...++
T Consensus 38 ~I~I~~d--~DaDGitS~ail~~~L~~~g~-~~~~~ip~~~--~~~~g-------~~~~~~~~~~~liItvD~G-~~~~~ 104 (491)
T COG0608 38 KILIYGD--YDADGITSAAILAKALRRLGA-DVDYYIPNRF--EEGYG-------AIRKLKEEGADLIITVDNG-SGSLE 104 (491)
T ss_pred EEEEEEe--cCcccHHHHHHHHHHHHHcCC-ceEEEeCCCc--cccch-------HHHHHHhcCCCEEEEECCC-cccHH
Confidence 7999999 499999999999999999986 3445555211 00011 112112223 345555332 12222
Q ss_pred c-----cCCceEEEEeCCCCCcchHhhhcCceEEEccCC----------cC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Q 046048 283 L-----FGSLKLVLINGHKLPTRQEALKDAVVEIFNCRK----------DC-SCCTVVAENFALTSPQILAGQGFSRILL 346 (414)
Q Consensus 283 ~-----~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~----------vG-Sc~TLVae~i~~~~~e~~i~~~iAtLLL 346 (414)
. ....++|++||| +++. .+ ...+.||..|. +| .+|-++++-+.... ..+++.+..
T Consensus 105 ~i~~~~~~g~~vIVtDHH-~~~~--~~-p~~~~ivNP~~~~~~~~~~~lag~gv~f~l~~al~~~~-----~~~ll~l~a 175 (491)
T COG0608 105 EIARAKELGIDVIVTDHH-PPGE--EL-PDAVAIVNPNLPGCDYPFKELAGVGVAFKLARALLEEL-----RKDLLDLVA 175 (491)
T ss_pred HHHHHHhCCCcEEEECCC-CCCC--CC-CCceEEECCCCCCCCCCchhhhhhhHHHHHHHHHHHHh-----hhhHHHHHH
Confidence 2 235899999999 5432 11 11233555432 33 33444444443321 246788888
Q ss_pred HHHHHhhCCCCC
Q 046048 347 AGILLDTGNLTN 358 (414)
Q Consensus 347 aGILtDT~NF~~ 358 (414)
.|-+.|-..+..
T Consensus 176 lGtv~D~~~l~~ 187 (491)
T COG0608 176 LGTVADVQPLTG 187 (491)
T ss_pred Hhhhhheeeccc
Confidence 899999887764
No 12
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=96.25 E-value=0.17 Score=55.34 Aligned_cols=102 Identities=17% Similarity=0.084 Sum_probs=62.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCccccccccccc---
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSY--- 280 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~--- 280 (414)
.++|.|| -|.|.|.|+-.+..+|++.|......+||=.. .+.+.+..+...-+...+ .+-+|++|-= ...
T Consensus 71 ~I~I~gD--yD~DGitstail~~~L~~~g~~~~~~~IP~R~--~eGYGl~~~~i~~~~~~~--~~LiItvD~G-i~~~e~ 143 (575)
T PRK11070 71 RIIVVGD--FDADGATSTALSVLALRSLGCSNVDYLVPNRF--EDGYGLSPEVVDQAHARG--AQLIVTVDNG-ISSHAG 143 (575)
T ss_pred EEEEEEe--cCccHHHHHHHHHHHHHHcCCCceEEEeCCCC--cCCCCCCHHHHHHHHhcC--CCEEEEEcCC-cCCHHH
Confidence 7999999 49999999999999999988633445665211 233677776555343322 2345555431 111
Q ss_pred c--cccCCceEEEEeCCCCCcchHhhhcCceEEEccCC
Q 046048 281 Y--DLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRK 316 (414)
Q Consensus 281 l--~~~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~ 316 (414)
+ .+....++|++|||.++.. + .....+|+.|.
T Consensus 144 i~~a~~~gidvIVtDHH~~~~~---~-P~a~a~iNP~~ 177 (575)
T PRK11070 144 VAHAHALGIPVLVTDHHLPGET---L-PAADAIINPNL 177 (575)
T ss_pred HHHHHHCCCCEEEECCCCCCCC---C-CCCeEEECCCC
Confidence 1 1235789999999987652 2 12234777654
No 13
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=87.45 E-value=1.3 Score=45.57 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=61.9
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHH---HHHCCCCCCCccccccccccccc
Q 046048 206 VVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWL---LGSCQIDLSSLIFVDEIDLSYYD 282 (414)
Q Consensus 206 vViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~l---L~~~~I~~~~LIF~dD~~l~~l~ 282 (414)
+|+.| .|+|-++|+++++.++.+...+ ..+.+ ....++... ++..++...-+|+..++.++++.
T Consensus 3 ~i~sH--~DlDG~acaaV~k~~~gk~vyn--~n~~~---------~~~~~i~~~l~~~~~~~~~~~i~i~DL~~n~d~~e 69 (339)
T COG2404 3 HIYSH--NDLDGYACAAVVKRFFGKNVYN--ANFGR---------EVSARINSILESAEESGIGDAILISDLDVNLDRFE 69 (339)
T ss_pred EEEec--CCcchHHHHHHHHHHhhhcccc--hhhhc---------cchHHHHHHHHHHHhhcccceEEEeecccCcchhH
Confidence 44456 4999999999999988431111 11221 122333333 34445553334444444443332
Q ss_pred c---------cCCceEEEEeCCCCCcc-hHhhh-cCceEEEccCCcCCHHHHHHHHHHhc
Q 046048 283 L---------FGSLKLVLINGHKLPTR-QEALK-DAVVEIFNCRKDCSCCTVVAENFALT 331 (414)
Q Consensus 283 ~---------~~~~~vILVDHh~l~~~-~~~l~-~~Vv~IIDHH~vGSc~TLVae~i~~~ 331 (414)
+ ....++.++|||.-... .+... .-|--.+|.-++ ++-+|++++.+.
T Consensus 70 ~~~~~l~~~~~~~~kv~wiDHH~t~~e~~~e~~~~~v~~~~D~~rc--aa~vvy~~l~~~ 127 (339)
T COG2404 70 ELVEKLKEATNKGTKVKWIDHHKTANETKEEVREAGVSVYVDDSRC--AAGVVYEYLKPH 127 (339)
T ss_pred HHHHHHHHHhhcCCceEEeccccccchhHHHhhhcCcEEEECCcch--hhhhhhheeccc
Confidence 2 13679999999998763 12222 234445665333 777999999773
No 14
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=81.43 E-value=7.8 Score=43.01 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=57.9
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccc---ccccc-ccccCCc
Q 046048 212 VCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDE---IDLSY-YDLFGSL 287 (414)
Q Consensus 212 spDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD---~~l~~-l~~~~~~ 287 (414)
++|.||+|++-.|..++++-.- ..-++||. -..|+..+++.+.-+...+|+..- +|+.. +....+.
T Consensus 7 ~~dvDalcA~kiL~~Llk~d~I--~~~l~PV~--------gy~el~~~~~~~~~~~~~vilIncGa~~dl~~~l~~~~~~ 76 (622)
T PF02724_consen 7 ALDVDALCACKILTSLLKSDNI--QYSLVPVS--------GYSELERAYEELDEDIKSVILINCGATVDLEEFLELDEDV 76 (622)
T ss_pred cCChHHHHHHHHHHHHHHhcCC--CeeEEEeC--------CHHHHHHHHHHHhhhhceEEEEecCchhhHHHHhCCCCce
Confidence 5799999999999999987543 34467874 356666666666333344444321 22222 2223678
Q ss_pred eEEEEeCCCCCcchHhhh-cCceEEEccCC
Q 046048 288 KLVLINGHKLPTRQEALK-DAVVEIFNCRK 316 (414)
Q Consensus 288 ~vILVDHh~l~~~~~~l~-~~Vv~IIDHH~ 316 (414)
.+.++|.|.+-.....+. ...|.|+|...
T Consensus 77 ~iyViDshRP~~L~Nv~~~~~~v~v~ddg~ 106 (622)
T PF02724_consen 77 TIYVIDSHRPWNLDNVFSDNDQVIVFDDGD 106 (622)
T ss_pred EEEEEeCCCCccHhhccCCCCcEEEEECCC
Confidence 899999999865322233 34455666543
No 15
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.20 E-value=20 Score=34.98 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=53.5
Q ss_pred hhcCCCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCC-CCCcccc
Q 046048 195 VSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQID-LSSLIFV 273 (414)
Q Consensus 195 ~~a~~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~-~~~LIF~ 273 (414)
+++|.+++ ++|.+.-. ++++.++||||.-.++.|- ...|++| +-.-..+....+...+.. ..+++..
T Consensus 36 lAAG~nAk-liVe~~s~---g~~~~ttiaLaaAAr~TgG-R~vCIvp-------~~~~~~~~~~~l~~~~~~~~vEfvvg 103 (218)
T PF07279_consen 36 LAAGWNAK-LIVEAWSS---GGAISTTIALAAAARQTGG-RHVCIVP-------DEQSLSEYKKALGEAGLSDVVEFVVG 103 (218)
T ss_pred Hhccccce-EEEEEecC---CCchHhHHHHHHHHHhcCC-eEEEEcC-------ChhhHHHHHHHHhhccccccceEEec
Confidence 34666555 55555332 4577789999999988875 2344443 223345566666666654 3355544
Q ss_pred cccccccccccCCceEEEEeCCCCC
Q 046048 274 DEIDLSYYDLFGSLKLVLINGHKLP 298 (414)
Q Consensus 274 dD~~l~~l~~~~~~~vILVDHh~l~ 298 (414)
+... ..+.....++++|||.+...
T Consensus 104 ~~~e-~~~~~~~~iDF~vVDc~~~d 127 (218)
T PF07279_consen 104 EAPE-EVMPGLKGIDFVVVDCKRED 127 (218)
T ss_pred CCHH-HHHhhccCCCEEEEeCCchh
Confidence 3221 11233467999999998643
No 16
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=68.84 E-value=13 Score=41.03 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=15.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 046048 205 HVVIGQDVCDVGSLASTFMYAFYL 228 (414)
Q Consensus 205 ivViGHespDlDSIgSAIalA~~L 228 (414)
++|=.| +|.|-+++.+++-..+
T Consensus 346 IiiRHH--aDaDG~~agvAlE~Ai 367 (715)
T COG1107 346 IIIRHH--ADADGYCAGVALEKAI 367 (715)
T ss_pred eEEecc--cCcccccchhhHHHHH
Confidence 444444 5999999998886644
No 17
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=64.35 E-value=62 Score=35.50 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccc---cccccccccccCC-ce
Q 046048 213 CDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFV---DEIDLSYYDLFGS-LK 288 (414)
Q Consensus 213 pDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~---dD~~l~~l~~~~~-~~ 288 (414)
-|.||+|++-.|..+++.-.- +.-++||. -..|+..++....-+...+|-. --+|+..+-..+. ..
T Consensus 32 ~DiDALCA~kiLt~Llk~D~i--qysivPVs--------G~~elek~~~e~~e~~~~iiLiNcG~~vDL~~~L~~P~e~~ 101 (587)
T KOG2475|consen 32 LDIDALCATKILTHLLKCDHI--QYSIVPVS--------GWSELEKAFLELQEQIKYIILINCGATVDLTRLLQPPSEDV 101 (587)
T ss_pred cChhHHHHHHHHHHHHhcccc--ceeEEEec--------chHHHHHHHHhhccCceEEEEecCCcchhHHHHhCCcccce
Confidence 699999999999999864321 33467764 2355555444443333332211 1122233222122 24
Q ss_pred EEEEeCCCCCcchHhhhcCceEEEccC
Q 046048 289 LVLINGHKLPTRQEALKDAVVEIFNCR 315 (414)
Q Consensus 289 vILVDHh~l~~~~~~l~~~Vv~IIDHH 315 (414)
+.++|.|.+-.....+.++.+.+++|.
T Consensus 102 ~fViDSHRP~nl~Niy~~~qi~~l~d~ 128 (587)
T KOG2475|consen 102 IFVIDSHRPFNLENIYEDNQIHLLDDG 128 (587)
T ss_pred EEEEeCCCCcchhhcccCceEEEecCC
Confidence 778888887654444555666677663
No 18
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=57.85 E-value=19 Score=39.51 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=37.1
Q ss_pred cceEEEeCCCCCChh-------HHHHHHHHHHHHHhc-CCCCceEEEEeeecccccccCcHHHHH
Q 046048 202 RLLHVVIGQDVCDVG-------SLASTFMYAFYLNLV-QENELFCTVPVINMKRADLNTRAELKW 258 (414)
Q Consensus 202 ~~~ivViGHespDlD-------SIgSAIalA~~L~~~-g~~~~~~~vPvinmpr~dl~lr~E~~~ 258 (414)
..++||+||+.+=+- =++|+|.+|.-++.. +. .+|||.||..+| .=..|+.+
T Consensus 84 ~t~vVvtGQQ~gLfTGPLYtiyK~is~I~LA~~l~~~l~~----pvVPVFWiAsED-HDf~EInh 143 (542)
T PF10079_consen 84 NTFVVVTGQQAGLFTGPLYTIYKAISAIKLAKELEEELGR----PVVPVFWIASED-HDFEEINH 143 (542)
T ss_pred CCEEEEeCcccccccchHHHHHHHHHHHHHHHHHHHHhCC----CeeeEEEccCCC-cCHHHhhh
Confidence 448999999864332 257999999888765 43 589999999987 33344443
No 19
>PF04522 DUF585: Protein of unknown function (DUF585); InterPro: IPR007610 This region represents the N-termini of Broad bean mottle virus, Gp1 (2a protein), and is always found N-terminal to a predicted RNA dependent RNA polymerase region (IPR001788 from INTERPRO).; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=36.04 E-value=27 Score=34.23 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=28.5
Q ss_pred EccCCcCCHHHHHHHHHHhcC-CCccccHHHHHHHHHHH
Q 046048 312 FNCRKDCSCCTVVAENFALTS-PQILAGQGFSRILLAGI 349 (414)
Q Consensus 312 IDHH~vGSc~TLVae~i~~~~-~e~~i~~~iAtLLLaGI 349 (414)
+|.-++|+||.=|+++...+. ..+...+++|.+||--|
T Consensus 74 fDQarWa~cC~nv~~~~~~~tg~~LiP~pEmARMLYLDi 112 (248)
T PF04522_consen 74 FDQARWASCCENVTNLAEGFTGVRLIPLPEMARMLYLDI 112 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCCcccChHHHHhHheecC
Confidence 455579999999999997663 44434569999999654
No 20
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.91 E-value=43 Score=32.32 Aligned_cols=51 Identities=25% Similarity=0.506 Sum_probs=33.8
Q ss_pred cccccCCCchh---hhhhhhhhHHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhHH
Q 046048 162 ASFYNGFSPQM---EIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSL 218 (414)
Q Consensus 162 a~~~~~~~p~~---~~~~s~~~i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDSI 218 (414)
.+||-+.+-.. .|- ..++..+|.+||...|++...+ -.++++||++ |+++-
T Consensus 73 ~syYr~a~GalLVydit-~r~sF~hL~~wL~D~rq~~~~N----mvImLiGNKs-DL~~r 126 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDIT-RRESFNHLTSWLEDARQHSNEN----MVIMLIGNKS-DLEAR 126 (216)
T ss_pred HHHhccCcceEEEEEcc-chhhHHHHHHHHHHHHHhcCCC----cEEEEEcchh-hhhcc
Confidence 34555544322 222 5677889999999999775322 2799999965 88764
No 21
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=69 Score=30.11 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=35.5
Q ss_pred cccccccCCCchh---hhhhhhhhHHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhH
Q 046048 160 SAASFYNGFSPQM---EIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGS 217 (414)
Q Consensus 160 s~a~~~~~~~p~~---~~~~s~~~i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDS 217 (414)
.+.++|.|.+-.. .+- +.++.+.|..||...|....+ .-.++++||+. |+|.
T Consensus 74 VtRsYYRGAAGAlLVYD~T-srdsfnaLtnWL~DaR~lAs~----nIvviL~GnKk-DL~~ 128 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDIT-SRDSFNALTNWLTDARTLASP----NIVVILCGNKK-DLDP 128 (214)
T ss_pred HHHHHhccccceEEEEecc-chhhHHHHHHHHHHHHhhCCC----cEEEEEeCChh-hcCh
Confidence 3566777777654 333 678889999999988843322 23677788865 7775
No 22
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=20.18 E-value=1.3e+02 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhH
Q 046048 177 SCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGS 217 (414)
Q Consensus 177 s~~~i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDS 217 (414)
+-++.+++..|+..++-++. .|.+.+...+||++ |++|
T Consensus 93 nr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKs-DL~S 130 (213)
T KOG0091|consen 93 NRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKS-DLQS 130 (213)
T ss_pred chhhHHHHHHHHHHHHHhcC--CCCeeEEEEecccc-chhh
Confidence 56677888999998875543 34466889999965 9985
Done!