Query 046048
Match_columns 414
No_of_seqs 193 out of 1149
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qb7_A Exopolyphosphatase; A/B 100.0 4.7E-39 1.6E-43 327.2 15.8 228 184-412 8-271 (397)
2 2haw_A Manganese-dependent ino 100.0 6.7E-33 2.3E-37 272.8 22.4 189 204-412 3-208 (309)
3 1k20_A Manganese-dependent ino 100.0 4.8E-33 1.6E-37 274.4 20.6 191 204-413 2-210 (310)
4 2eb0_A Manganese-dependent ino 100.0 7.8E-33 2.7E-37 272.1 20.0 185 205-413 2-208 (307)
5 1wpn_A Manganese-dependent ino 100.0 3.4E-29 1.2E-33 229.1 20.0 169 204-392 3-188 (188)
6 3dev_A SH1221; alpha-beta prot 99.9 5.7E-25 2E-29 218.4 19.8 172 181-388 5-192 (320)
7 3dma_A Exopolyphosphatase-rela 99.9 1.9E-24 6.4E-29 216.5 14.8 172 177-374 7-199 (343)
8 2zxr_A Single-stranded DNA spe 98.9 2.9E-09 9.9E-14 114.9 10.7 152 181-358 62-227 (666)
9 3dma_A Exopolyphosphatase-rela 54.1 6.2 0.00021 38.9 2.6 16 286-301 117-132 (343)
10 2k89_A PLA2P, PLAP, phospholip 11.8 41 0.0014 26.7 -0.4 11 10-20 34-44 (80)
No 1
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A*
Probab=100.00 E-value=4.7e-39 Score=327.23 Aligned_cols=228 Identities=21% Similarity=0.364 Sum_probs=187.9
Q ss_pred HHHHHHHhhhhhhcC-CCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCC-------CCceEEEEeeecccccccCcHH
Q 046048 184 LNSYLKARKDEVSAG-VPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQE-------NELFCTVPVINMKRADLNTRAE 255 (414)
Q Consensus 184 L~~fL~~~k~~~~a~-~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~-------~~~~~~vPvinmpr~dl~lr~E 255 (414)
|++||+++|+++.+. .++...++|+||++||+|||||||||++++++.|+ .....++|++|+||.+..+++|
T Consensus 8 l~~fl~~~~~~l~~~~~~~~~~iiV~gH~~pD~DaigSalala~~l~~~gk~~~~~~~~~~~~~v~v~~~~r~~~~~~~e 87 (397)
T 2qb7_A 8 VPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRD 87 (397)
T ss_dssp HHHHHHHHHHSCHHHHSBTTEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSGGGSSSCCCCCCEEECSSCGGGGGGCHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHhcCCccccccccCCccEEEEEcccccccccCHH
Confidence 899999999888755 25567899999999999999999999999988762 0022468999999988899999
Q ss_pred HHHHHHHCCCCCCCcccccccc--cccccccCCceEEEEeCCCCCcchHhhhcCceEEEccCC---------------cC
Q 046048 256 LKWLLGSCQIDLSSLIFVDEID--LSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRK---------------DC 318 (414)
Q Consensus 256 ~~~lL~~~~I~~~~LIF~dD~~--l~~l~~~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~---------------vG 318 (414)
+.++|..++++.+.++|.+++. +..+.......+||||||........+...++.|||||+ +|
T Consensus 88 ~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~~~~~~~~~~iIDHH~~~~~~~~~~~~~i~p~g 167 (397)
T 2qb7_A 88 VMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQKHLDAEPRIVKVSG 167 (397)
T ss_dssp HHHHHHHTTCCGGGSCCHHHHHHHHHHSCTTCEEEEEEESCSSCCGGGTTTCCEEEEEEECSCCCCCCTTCSSEEECCCS
T ss_pred HHHHHHHcCCChhhcccHHHHHHHHHhhcccCCCeEEEecCCCcccCcccccccEEEEEcCCCCCCCCCCCCccEEeecc
Confidence 9999999999988888776652 001111123369999999998754445556889999996 79
Q ss_pred CHHHHHHHHHHhc-CCCccccHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhhc----------CCCCHHHHHHH
Q 046048 319 SCCTVVAENFALT-SPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGA----------GRFGCNGLYQI 387 (414)
Q Consensus 319 Sc~TLVae~i~~~-~~e~~i~~~iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ga----------~~~~~~~lf~~ 387 (414)
||||||++++++. .....+++++|+|||+||++||++|+ .+||++|++||++|.+.+ +..+++++|++
T Consensus 168 St~tlv~~~~~~~~~~~~~i~~~~A~~L~~gI~~DT~~F~-~~tt~~d~~aa~~L~~~~~~~~~~~~~~~g~d~~~~~~~ 246 (397)
T 2qb7_A 168 SCSSLVFNYWYEKLQGDREVVMNIAPLLMGAILIDTSNMR-RKVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKE 246 (397)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTT-SSCCHHHHHHHHHHHHHHHCSCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhccCCcCHHHHHHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHHhccccccccccCcccHHHHHHH
Confidence 9999999999875 11223678999999999999999999 599999999999997764 13478999999
Q ss_pred HHHHhhcCCCCCHHHHHHccccccc
Q 046048 388 LRYLMYDVSDLKVVDILRKDFKKWK 412 (414)
Q Consensus 388 L~~AK~Dis~LS~~dlLrkDYK~f~ 412 (414)
|.++|.|+++++..++|++|||.|.
T Consensus 247 l~~a~~~~~~l~l~~~l~~d~K~~~ 271 (397)
T 2qb7_A 247 IKSRKNDIKGFSVSDILKKDYKQFN 271 (397)
T ss_dssp HHHHHTCCTTCCHHHHHHTTEEEEE
T ss_pred HHHHhhccccCCHHHHHHHhhhhcc
Confidence 9999999999999999999999996
No 2
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=100.00 E-value=6.7e-33 Score=272.78 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=157.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDL 283 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~~ 283 (414)
.++|+||++||+||||||+||++++++.|+. +.|+. + ..+++++.+++..++++.+.++ +++.
T Consensus 3 ~i~I~gH~~pD~DaigSalal~~~l~~~g~~----~~~~~--~---~~~~~~~~~ll~~~~~~~~~~~--~~~~------ 65 (309)
T 2haw_A 3 KILIFGHQNPDTDTICSAIAYADLKNKLGFN----AEPVR--L---GQVNGETQYALDYFKQESPRLV--ETAA------ 65 (309)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCC----EEEEE--S---SCCCHHHHHHHHHTTCCCCEEC--SCST------
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHHHHcCCC----eEEEE--C---CCCCHHHHHHHHHcCCCcHHhh--hhcc------
Confidence 4899999999999999999999999998873 33443 1 2467999999999998766654 2220
Q ss_pred cCCceEEEEeCCCCCcchHhh-hcCceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHH
Q 046048 284 FGSLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRILL 346 (414)
Q Consensus 284 ~~~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLL 346 (414)
.....+|+||||..+.....+ ...++.|||||+ +|||||||++++++.+.. +++++|+|||
T Consensus 66 ~~~~~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~~~~~~~~~~~~~~~gSt~~lv~~~~~~~~~~--i~~~~A~~L~ 143 (309)
T 2haw_A 66 NEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENNVK--IEKEIAGLML 143 (309)
T ss_dssp TTCSEEEEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECCSSCHHHHHHHHHHHTTCC--CCHHHHHHHH
T ss_pred CCCCEEEEEeCCCcccchhhhhhcCEEEEECCCcCCCcCCCCCcEEEEccccHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 122469999999987543333 346789999996 999999999999887643 6889999999
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHccccccc
Q 046048 347 AGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWK 412 (414)
Q Consensus 347 aGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~ 412 (414)
+||++||++|++++||++|+++|++|.+..|. +.+.++++|.+++.++++++..++|++|||.|.
T Consensus 144 ~gI~~DT~~F~~~~tt~~d~~aa~~L~~~~G~-d~~~i~~~l~~~~~~~~~~~~~~~l~~d~k~~~ 208 (309)
T 2haw_A 144 SAIISDSLLFKSPTCTDQDVAAAKELAEIAGV-DAEEYGLNMLKAGADLSKKTVEELISLDAKEFT 208 (309)
T ss_dssp HHHHHHHTTTTSTTCCHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHTCCTTCCHHHHTTTTEEEEE
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHhccCcccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999864554 899999999999999999999999999999985
No 3
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Probab=100.00 E-value=4.8e-33 Score=274.36 Aligned_cols=191 Identities=16% Similarity=0.209 Sum_probs=157.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHH-HhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYL-NLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYD 282 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L-~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~ 282 (414)
.++|+||++||+||||||+||++++ ++.|+. +.|+. ++ .+.+++.+++..++++.+.++ +++.
T Consensus 2 ~i~I~gH~~pD~DaigSalal~~~l~~~~g~~----~~~~~--~~---~~~~~~~~ll~~~~~~~~~~~--~~~~----- 65 (310)
T 1k20_A 2 KILVFGHQNPDSDAIGSSYAFAYLAREAYGLD----TEAVA--LG---EPNEETAFVLDYFGVAAPRVI--TSAK----- 65 (310)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHHHCCC----EEECB--SS---CCCHHHHHHHHHHTCCCCCBC--SCTG-----
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHHHhccCCc----eEEEE--CC---CCCHHHHHHHHHcCCCchhhh--hhhc-----
Confidence 3899999999999999999999999 888873 33333 22 467999999999999877654 3321
Q ss_pred ccCCceEEEEeCCCCCcchHhh-hcCceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHH
Q 046048 283 LFGSLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRIL 345 (414)
Q Consensus 283 ~~~~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLL 345 (414)
......+|+||||.+.+....+ ...++.|||||+ +|||||||++++++.+.. +++++|+||
T Consensus 66 ~~~~~~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~~~~~~~~~~~i~p~gSt~tiv~~~~~~~~~~--i~~~~A~~L 143 (310)
T 1k20_A 66 AEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHSVA--VSKEIAGLM 143 (310)
T ss_dssp GGTCSEEEEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHHTTCC--CCHHHHHHH
T ss_pred cccCceEEEEcCCCcccccccccccCEEEEECCCcCCCcCCCCCcEEEEEEccHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 0011469999999887643334 345789999996 799999999999887533 688999999
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHcccccccc
Q 046048 346 LAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKT 413 (414)
Q Consensus 346 LaGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~~ 413 (414)
|+||++||++|++++||++|+++|++|.+.+|. +.+.++++|.+++.|+++++..+||++|||+|+.
T Consensus 144 ~~gI~~DT~~F~~~~tt~~d~~aa~~L~~~~G~-d~~~i~~~l~~~~sd~~~ls~~~ll~~~lk~~~~ 210 (310)
T 1k20_A 144 LSGLISDTLLLKSPTTHPTDKAIAPELAELAGV-NLEEYGLAMLKAGTNLASKSAEELIDIDAKTFEL 210 (310)
T ss_dssp HHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHTS-CHHHHHHHHHHTTCCCTTSCHHHHTTSSEEEEEE
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHhccCcccCCHHHHHHHHHHhcee
Confidence 999999999999999999999999999865554 8999999999999999999999999999999864
No 4
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.8e-33 Score=272.09 Aligned_cols=185 Identities=23% Similarity=0.259 Sum_probs=154.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCccccccccccccccc
Q 046048 205 HVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLF 284 (414)
Q Consensus 205 ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~~~ 284 (414)
++|+||++||+||||||+||++++ + . .|++ + ..+++++.+++..++++.+.++. ++
T Consensus 2 i~I~gH~~pD~DaigSalal~~~l---~---~---~~~~--~---~~~~~~~~~ll~~~~~~~~~~~~--~~-------- 57 (307)
T 2eb0_A 2 RYVVGHKNPDTDSIASAIVLAYFL---D---C---YPAR--L---GDINPETEFVLRKFGVMEPELIE--SA-------- 57 (307)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHH---T---S---EEEE--S---SCCCHHHHHHHHHHTCCCCEECC--CC--------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHh---C---C---eEEE--c---CCCCHHHHHHHHHcCCCchhhhh--hc--------
Confidence 789999999999999999999998 2 1 2333 1 25679999999999998776653 21
Q ss_pred CCceEEEEeCCCCCcchHhh-hcCceEEEccCC---------------cCCHHHHHHHHHHhcCC------CccccHHHH
Q 046048 285 GSLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK---------------DCSCCTVVAENFALTSP------QILAGQGFS 342 (414)
Q Consensus 285 ~~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~---------------vGSc~TLVae~i~~~~~------e~~i~~~iA 342 (414)
....+||||||.++.....+ ...++.|||||+ +|||||||++++++.+. ...+++++|
T Consensus 58 ~~~~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~~~~~~~~~~~~~~gSt~tlv~~~~~~~~~~~~~~~~~~i~~~~A 137 (307)
T 2eb0_A 58 KGKEIILVDHSEKSQSFDDLEEGKLIAIIDHHKVGLTTTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKELKPDLA 137 (307)
T ss_dssp TTCEEEEESCCCGGGSCTTGGGSEEEEEEESSCCCCCCSSCCEEEECSSSCHHHHHHHHHHTTCGGGGTCCCCCCCHHHH
T ss_pred cCCeEEEEeCCCcccchhhcccCCEEEEEcCCCCccCCCCCcEEEEeecchHHHHHHHHHHhcCccccccccccCCHHHH
Confidence 12379999999987643334 245789999995 89999999999987651 123789999
Q ss_pred HHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHcccccccc
Q 046048 343 RILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKT 413 (414)
Q Consensus 343 tLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~~ 413 (414)
+|||+||++||+||++++||++|+++|++|.+.+|..++++++++|.+++.++++++..++|++|||.|+.
T Consensus 138 ~~L~~gI~~DT~~f~~~~tt~~d~~aa~~L~~~~g~~d~~~i~~~l~~~~~~~~~~~~~~~l~~d~k~~~~ 208 (307)
T 2eb0_A 138 GLLLSAIISDTVLFKSPTTTDLDKEMAKKLAEIAGISNIEEFGMEILKAKSVVGKLKPEEIINMDFKNFDF 208 (307)
T ss_dssp HHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHGGGGSCHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhCCCccHHHHHHHHHHhhcCcccCCHHHHHHHhhhheEE
Confidence 99999999999999999999999999999997777679999999999999999999999999999999853
No 5
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=99.97 E-value=3.4e-29 Score=229.11 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=132.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCcccccccccccccc
Q 046048 204 LHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDL 283 (414)
Q Consensus 204 ~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~~ 283 (414)
.++|+||++||+||||||+||++++++.|+. ..+++ +. .+.++.++++..+++..+.++ +++.
T Consensus 3 ~i~I~gH~~pD~DaigSa~al~~~l~~~g~~-~~~~~-----~~---~~~~~~~~~l~~~~~~~~~~~--~~~~------ 65 (188)
T 1wpn_A 3 KILIFGHQNPDTDTICSAIAYADLKNKLGFN-AEPVR-----LG---QVNGETQYALDYFKQESPRLV--ETAA------ 65 (188)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCC-EEEEE-----SS---CCCHHHHHHHHHTTCCCCEEC--SCST------
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHHHhCCc-eEEEE-----CC---CCCHHHHHHHHHcCCCchhhh--hhhc------
Confidence 4899999999999999999999999999873 33332 22 466889998899988755543 2220
Q ss_pred cCCceEEEEeCCCCCcchHhh-hcCceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHHH
Q 046048 284 FGSLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRILL 346 (414)
Q Consensus 284 ~~~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLLL 346 (414)
.....+|+|||+........+ ...++.|||||+ +|||||||++++++.+.. +++++|++||
T Consensus 66 ~~~~~vi~VD~~~~~r~~~~~~~~~~vivIDHH~~~~~~~~~~~~~~~~~~~St~~lv~~~~~~~~~~--i~~~~A~~l~ 143 (188)
T 1wpn_A 66 NEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENNVK--IEKEIAGLML 143 (188)
T ss_dssp TTCSEEEEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHHTTCC--CCHHHHHHHH
T ss_pred cCCCeEEEEeCCCcccchhhhccCCeEEEECCCCCCCCCCCCCeEEEeccccHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 122468999999876422223 235678899995 999999999999886533 6789999999
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 046048 347 AGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLM 392 (414)
Q Consensus 347 aGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK 392 (414)
+||++||++|++++||++|+++|++|.+..|. +.++++++|..+|
T Consensus 144 ~gI~~DTg~f~~~~tt~~~~~~aa~L~~~~g~-d~~~i~~~l~~~~ 188 (188)
T 1wpn_A 144 SAIISDSLLFKSPTCTDQDVAAAKELAEIAGV-DAEEYGLNMLKAG 188 (188)
T ss_dssp HHHHHHHTTTTSTTCCHHHHHHHHHHHHHHTS-CHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHhcC
Confidence 99999999999999999999999999854554 8999999998875
No 6
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=99.93 E-value=5.7e-25 Score=218.43 Aligned_cols=172 Identities=15% Similarity=0.190 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHH
Q 046048 181 INRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLL 260 (414)
Q Consensus 181 i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL 260 (414)
++.+.+.|++.+ .++|+||.+||+|||||++|++++++++++. ..++++. ..|. ...| +
T Consensus 5 ~~~i~~~i~~~~-----------~i~I~~H~~PD~DaigSalal~~~l~~~~~~-k~v~~~~-~~~~-------~~~f-l 63 (320)
T 3dev_A 5 FNEIMQRVKEAE-----------TIIIHRHVRPDPDAYGSQLGLKLYLERKFPE-KNIYATG-EAEP-------SLSF-I 63 (320)
T ss_dssp HHHHHHHHHTCS-----------EEEEECBSSCCHHHHHHHHHHHHHHHHHCTT-SEEEECC-CCCG-------GGTT-T
T ss_pred HHHHHHHHhcCC-----------eEEEEeCCCCCchHHHHHHHHHHHHHHhCCC-CEEEEeC-CCcc-------hhhh-c
Confidence 456777777665 7999999999999999999999999998652 3444431 1111 1111 1
Q ss_pred HHCCCCCCCcccccccccccccccCCceEEEEeCCCCCcchH-hh-hcCceEEEccCC--------------cCCHHHHH
Q 046048 261 GSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQE-AL-KDAVVEIFNCRK--------------DCSCCTVV 324 (414)
Q Consensus 261 ~~~~I~~~~LIF~dD~~l~~l~~~~~~~vILVDHh~l~~~~~-~l-~~~Vv~IIDHH~--------------vGSc~TLV 324 (414)
. .. +++... ......+|+|||+....... .+ ...++.|||||+ +|||||||
T Consensus 64 ~-----~~-----~~i~~~---~~~~~lvi~VD~~~~~r~~~~~~~~~~~vivIDHH~~~~~~~~~~~i~p~~~St~eiv 130 (320)
T 3dev_A 64 G-----DL-----DEIDDS---VYSDALVIVCDTANAPRIDDQRYLNGQSLIKIDHHPATDQYGDVNFVNTEASSTSEII 130 (320)
T ss_dssp C-----CC-----CCCCSS---TTTTCEEEEESCSSGGGBSSGGGGSSSCEEEEECSCSSCCCSSEEEECTTSSCHHHHH
T ss_pred c-----Cc-----cccccc---ccCCCEEEEECCCCchhcchhhhhccCCEEEEcCCCCCCCCCCeEEEecCCCcHHHHH
Confidence 1 00 111100 01235688888887764321 12 235677888885 99999999
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 046048 325 AENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQIL 388 (414)
Q Consensus 325 ae~i~~~~~e~~i~~~iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L 388 (414)
+++++..+..+.+++++|++||+||++||++|++++||++|+++|++|.+ .| .+...+++.|
T Consensus 131 ~~~~~~~~~~~~i~~~~A~~L~~GI~tDTg~F~~~~tt~~t~~aaa~L~~-~G-ad~~~i~~~l 192 (320)
T 3dev_A 131 FDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLFSNTSPHTMEVASQLLA-YP-FNHNAELNKM 192 (320)
T ss_dssp HHHHHTTTCTTTCCHHHHHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHH-SS-SCHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHccCcCCCCCCHHHHHHHHHHHH-cC-CCHHHHHHHH
Confidence 99998653233478999999999999999999999999999999999976 33 2677777776
No 7
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=99.91 E-value=1.9e-24 Score=216.51 Aligned_cols=172 Identities=12% Similarity=0.182 Sum_probs=117.8
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHH
Q 046048 177 SCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAEL 256 (414)
Q Consensus 177 s~~~i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~ 256 (414)
+.+.+++|.+.|++.+ .++|+||.+||+|||||++|++.++++.|+ +..+++| . .+. ...
T Consensus 7 ~~~~~~~l~~~i~~~~-----------~i~I~~H~~pD~DaiGS~~~l~~~l~~~g~-~~~~~~~-----~-~~~--~~~ 66 (343)
T 3dma_A 7 AQAHIDHFTKWFERAD-----------KIVIVSHVSPDGDAIGSSLGLYHFLDSQDK-IVNVIVP-----N-AFP--DFL 66 (343)
T ss_dssp CHHHHHHHHHHHHHCS-----------EEEEEECSSCCHHHHHHHHHHHHHHHHTSC-EEEEEES-----S-CCC--GGG
T ss_pred CHHHHHHHHHHHhcCC-----------eEEEEecCCCChHHHHHHHHHHHHHHHcCC-CEEEECC-----C-CCc--hHh
Confidence 5677888888888876 799999999999999999999999999987 3433333 1 111 111
Q ss_pred HHHHHHCCCCCCCccccccccccc-ccc-cCCceEEEEeCCCCCcch---Hhhh--cCceEEEccCC-------------
Q 046048 257 KWLLGSCQIDLSSLIFVDEIDLSY-YDL-FGSLKLVLINGHKLPTRQ---EALK--DAVVEIFNCRK------------- 316 (414)
Q Consensus 257 ~~lL~~~~I~~~~LIF~dD~~l~~-l~~-~~~~~vILVDHh~l~~~~---~~l~--~~Vv~IIDHH~------------- 316 (414)
.| +.. ...+...++.+ .. ... .....+|+|||+.+.... ..+. ...+.|||||+
T Consensus 67 ~f-l~~----~~~i~~~~~~~-~~~~~~~~~~~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~~~~~~~~~~i~~ 140 (343)
T 3dma_A 67 KW-MPG----SKDILLYDRYQ-EFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHP 140 (343)
T ss_dssp TT-STT----GGGCEETTTCH-HHHHHHHHHCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSCCSCSSEEEECT
T ss_pred hh-ccC----cchhcccccCh-HHHhhcccCCCEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCCCCCCCceEEEec
Confidence 11 100 00000000000 00 000 123467888888766421 1222 23456888885
Q ss_pred -cCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHh
Q 046048 317 -DCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLIN 374 (414)
Q Consensus 317 -vGSc~TLVae~i~~~~~e~~i~~~iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ 374 (414)
+|||||||++++++.+..+.+++++|++||+||++||++|++++||++|+++|++|.+
T Consensus 141 ~~~ST~eiv~~l~~~~~~~~~i~~~~At~L~~GI~tDTg~F~~~~Tt~~t~~aaa~L~~ 199 (343)
T 3dma_A 141 EISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLS 199 (343)
T ss_dssp TSSCHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHTTTTTSSCCCHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHH
Confidence 8999999999998875333478999999999999999999999999999999999876
No 8
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=98.92 E-value=2.9e-09 Score=114.95 Aligned_cols=152 Identities=11% Similarity=0.040 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHH
Q 046048 181 INRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLL 260 (414)
Q Consensus 181 i~~L~~fL~~~k~~~~a~~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL 260 (414)
+++|.+.+++.+ .++|+||. |.|+|+|+++++.+|+++|+ +...++|=. ++ +.+.+.++ .+
T Consensus 62 v~~i~~aI~~~e-----------kI~I~GH~--D~DGi~Saa~L~~~L~~lG~-~v~~~ip~r-~~-egygl~~~---~I 122 (666)
T 2zxr_A 62 AALLEEALRQGK-----------RIRVHGDY--DADGLTGTAILVRGLAALGA-DVHPFIPHR-LE-EGYGVLME---RV 122 (666)
T ss_dssp HHHHHHHHHTTC-----------EEEEECCS--SHHHHHHHHHHHHHHHHTTC-EEEECCC-------------------
T ss_pred HHHHHHHHHcCC-----------eEEEEecc--CCchHHHHHHHHHHHHHcCC-cEEEecCCC-CC-ccccCCHH---HH
Confidence 456666666655 79999997 99999999999999999987 344444410 01 11333333 12
Q ss_pred HHCCCCCCCccccccccccc--ccc--cCCceEEEEeCCCCCcchHhhhcCceEEEccCCcC------CHH----HHHHH
Q 046048 261 GSCQIDLSSLIFVDEIDLSY--YDL--FGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDC------SCC----TVVAE 326 (414)
Q Consensus 261 ~~~~I~~~~LIF~dD~~l~~--l~~--~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~vG------Sc~----TLVae 326 (414)
+...-..+-+|++|--..+. ... ....++|++|||..+..... . .+|+.+..+ +|| .||++
T Consensus 123 ~~~~~~~~LIItVD~G~~s~~~i~~a~~~g~~VIViDHH~~~~~~p~---a--~iVnP~~~s~~~k~L~gaGVaf~Lv~a 197 (666)
T 2zxr_A 123 PEHLEASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPP---G--LVVHPALTPDLKEKPTGAGVAFLLLWA 197 (666)
T ss_dssp ------CCEEEESCCC--------------CEEEEECCCC-------------CEECGGGSTTCCCCCCHHHHHHHHHHH
T ss_pred HhhccCCCEEEEEcCCchhhhhHHHHHhCCCCEEEECCcCCCCcCCC---e--EEEcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 22111123344443321111 111 13568999999998753221 1 256543333 333 67777
Q ss_pred HHHhcCCCccccHHHHHHHHHHHHHhhCCCCC
Q 046048 327 NFALTSPQILAGQGFSRILLAGILLDTGNLTN 358 (414)
Q Consensus 327 ~i~~~~~e~~i~~~iAtLLLaGILtDT~NF~~ 358 (414)
+++..+.. ++.++|+|++.||+.||++|+.
T Consensus 198 L~~~l~~~--~~~~~adlvalGivaDt~~L~~ 227 (666)
T 2zxr_A 198 LHERLGLP--PPLEYADLAAVGTIADVAPLWG 227 (666)
T ss_dssp HHHHTTCC--CCGGGHHHHHHHHHHTTCCCSH
T ss_pred HHHHcCCC--CCHHHHHHHHHHHHHhccccch
Confidence 76665432 4568899999999999999974
No 9
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=54.11 E-value=6.2 Score=38.88 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=12.4
Q ss_pred CceEEEEeCCCCCcch
Q 046048 286 SLKLVLINGHKLPTRQ 301 (414)
Q Consensus 286 ~~~vILVDHh~l~~~~ 301 (414)
...+++||||..+..+
T Consensus 117 ~~~~ivIDHH~~~~~~ 132 (343)
T 3dma_A 117 PGRKIMIDHHLYPEDF 132 (343)
T ss_dssp CSEEEEEECCSSCCSC
T ss_pred CCCEEEEcCCCCCCCC
Confidence 3578899999987643
No 10
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=11.80 E-value=41 Score=26.70 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=8.9
Q ss_pred CcccCCCcccc
Q 046048 10 KYVHGEDPYFD 20 (414)
Q Consensus 10 ~~~~~~~~~~~ 20 (414)
||.++||||+.
T Consensus 34 pyN~~dnP~~a 44 (80)
T 2k89_A 34 PYNTSDDPWLT 44 (80)
T ss_dssp EECTTSCHHHH
T ss_pred CccCCCCHHHH
Confidence 78888888875
Done!