Query 046049
Match_columns 261
No_of_seqs 208 out of 1736
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-28 4.3E-33 236.0 17.0 230 23-261 21-273 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.8 1E-20 2.2E-25 162.8 11.7 112 145-260 1-112 (287)
3 PLN03210 Resistant to P. syrin 99.6 1.5E-14 3.2E-19 145.6 13.3 106 145-260 189-307 (1153)
4 cd01128 rho_factor Transcripti 98.9 3.4E-09 7.3E-14 89.2 6.9 92 163-258 16-112 (249)
5 TIGR03015 pepcterm_ATPase puta 98.9 5.7E-08 1.2E-12 82.7 13.1 87 163-260 43-134 (269)
6 PF13401 AAA_22: AAA domain; P 98.8 9.7E-09 2.1E-13 77.7 5.9 86 163-258 4-96 (131)
7 PRK00411 cdc6 cell division co 98.8 4.4E-08 9.6E-13 88.1 11.1 110 145-260 35-149 (394)
8 PRK09376 rho transcription ter 98.8 5.4E-09 1.2E-13 92.2 4.9 91 163-258 169-265 (416)
9 TIGR02928 orc1/cdc6 family rep 98.7 1.1E-07 2.3E-12 84.7 11.6 106 145-259 20-139 (365)
10 TIGR00767 rho transcription te 98.6 1.1E-07 2.3E-12 84.5 7.2 91 162-258 167-264 (415)
11 PF13191 AAA_16: AAA ATPase do 98.3 1.4E-06 3.1E-11 69.6 6.8 42 145-186 5-47 (185)
12 PTZ00202 tuzin; Provisional 98.3 2.1E-05 4.6E-10 70.6 13.6 94 145-255 267-367 (550)
13 cd00009 AAA The AAA+ (ATPases 98.3 6.1E-06 1.3E-10 62.6 9.1 40 145-186 3-42 (151)
14 COG1474 CDC6 Cdc6-related prot 98.3 8.5E-06 1.8E-10 72.5 10.7 105 145-258 22-132 (366)
15 PF05729 NACHT: NACHT domain 98.2 3.4E-06 7.4E-11 66.0 6.7 82 164-258 1-90 (166)
16 PRK11331 5-methylcytosine-spec 98.1 6.2E-06 1.3E-10 74.5 6.4 64 145-215 180-243 (459)
17 PRK08118 topology modulation p 98.1 2E-06 4.3E-11 68.2 2.5 34 165-198 3-37 (167)
18 PF01637 Arch_ATPase: Archaeal 98.0 1.7E-05 3.6E-10 65.5 7.7 40 145-186 4-43 (234)
19 PF04665 Pox_A32: Poxvirus A32 98.0 9.5E-06 2.1E-10 67.7 5.8 35 163-199 13-47 (241)
20 smart00382 AAA ATPases associa 98.0 3.5E-05 7.5E-10 57.8 7.8 86 164-260 3-89 (148)
21 PTZ00112 origin recognition co 98.0 7.3E-05 1.6E-09 72.3 11.3 107 145-258 760-878 (1164)
22 KOG2543 Origin recognition com 98.0 7.4E-05 1.6E-09 65.4 10.1 106 145-258 11-124 (438)
23 PRK04841 transcriptional regul 97.9 7.1E-05 1.5E-09 74.4 11.2 100 149-258 19-130 (903)
24 PF13173 AAA_14: AAA domain 97.8 3.6E-05 7.7E-10 58.2 5.0 34 163-199 2-35 (128)
25 PRK13342 recombination factor 97.7 8.1E-05 1.8E-09 67.6 7.0 33 152-186 27-59 (413)
26 PRK12608 transcription termina 97.7 0.0001 2.3E-09 65.2 7.3 105 148-258 119-229 (380)
27 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.0001 2.2E-09 61.0 6.8 51 145-199 22-72 (226)
28 PRK06893 DNA replication initi 97.7 4.5E-05 9.8E-10 63.6 4.3 35 163-199 39-73 (229)
29 KOG2028 ATPase related to the 97.7 0.0001 2.2E-09 64.4 6.3 72 161-258 160-231 (554)
30 PF00004 AAA: ATPase family as 97.7 4.7E-05 1E-09 57.1 3.8 21 166-186 1-21 (132)
31 PHA00729 NTP-binding motif con 97.6 0.0002 4.4E-09 59.1 7.5 32 152-185 8-39 (226)
32 PF05496 RuvB_N: Holliday junc 97.6 0.00012 2.7E-09 60.1 5.9 42 145-186 32-73 (233)
33 PRK08116 hypothetical protein; 97.6 0.00015 3.1E-09 62.0 6.7 48 164-222 115-162 (268)
34 PRK09361 radB DNA repair and r 97.6 0.00027 5.9E-09 58.6 8.1 98 154-258 14-116 (225)
35 PRK07952 DNA replication prote 97.6 0.00037 7.9E-09 58.6 8.8 39 148-186 84-122 (244)
36 COG2256 MGS1 ATPase related to 97.6 0.00012 2.5E-09 64.7 5.9 30 162-193 47-76 (436)
37 PF13207 AAA_17: AAA domain; P 97.6 5E-05 1.1E-09 56.4 3.2 21 165-185 1-21 (121)
38 TIGR02237 recomb_radB DNA repa 97.6 0.00032 6.8E-09 57.5 8.0 96 156-258 5-106 (209)
39 PRK12377 putative replication 97.5 0.00025 5.5E-09 59.7 6.8 35 163-199 101-135 (248)
40 PF05621 TniB: Bacterial TniB 97.5 0.0014 3E-08 56.4 11.2 105 145-258 42-154 (302)
41 PRK06696 uridine kinase; Valid 97.5 0.00016 3.4E-09 60.1 5.4 41 145-185 3-44 (223)
42 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00055 1.2E-08 57.0 8.7 96 159-258 15-124 (235)
43 PRK05541 adenylylsulfate kinas 97.5 0.00014 3.1E-09 57.9 4.9 36 162-199 6-41 (176)
44 PRK07261 topology modulation p 97.5 0.00023 4.9E-09 56.6 6.0 35 165-199 2-37 (171)
45 cd01393 recA_like RecA is a b 97.5 0.0011 2.3E-08 54.9 9.6 101 155-259 11-124 (226)
46 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00032 6.8E-09 59.7 5.9 92 162-258 68-172 (274)
47 PRK07667 uridine kinase; Provi 97.4 0.00025 5.4E-09 57.5 4.9 37 149-185 3-39 (193)
48 PRK08181 transposase; Validate 97.4 0.0006 1.3E-08 58.2 6.9 34 164-199 107-140 (269)
49 PRK04301 radA DNA repair and r 97.3 0.0017 3.7E-08 56.8 9.9 100 155-258 94-207 (317)
50 PRK08727 hypothetical protein; 97.3 0.00025 5.5E-09 59.3 4.5 34 164-199 42-75 (233)
51 PRK04195 replication factor C 97.3 0.0014 3.1E-08 60.7 9.7 42 145-186 19-62 (482)
52 TIGR00635 ruvB Holliday juncti 97.3 0.0013 2.8E-08 57.1 8.5 106 145-259 9-118 (305)
53 PRK13341 recombination factor 97.3 0.00061 1.3E-08 65.8 6.8 33 151-185 42-74 (725)
54 PRK09270 nucleoside triphospha 97.2 0.0021 4.7E-08 53.5 9.0 26 160-185 30-55 (229)
55 TIGR02012 tigrfam_recA protein 97.2 0.0014 2.9E-08 57.3 7.8 88 161-258 53-142 (321)
56 KOG2004 Mitochondrial ATP-depe 97.2 0.0014 2.9E-08 62.0 8.1 88 98-185 355-460 (906)
57 COG1618 Predicted nucleotide k 97.2 0.00026 5.6E-09 55.0 2.8 23 163-185 5-27 (179)
58 PRK00080 ruvB Holliday junctio 97.2 0.0021 4.5E-08 56.6 9.0 105 145-258 30-138 (328)
59 cd01394 radB RadB. The archaea 97.2 0.0021 4.4E-08 53.0 8.4 51 154-209 10-60 (218)
60 TIGR03499 FlhF flagellar biosy 97.2 0.0016 3.5E-08 56.0 7.9 24 162-185 193-216 (282)
61 TIGR01242 26Sp45 26S proteasom 97.2 0.00048 1E-08 61.5 4.8 42 145-186 127-179 (364)
62 PTZ00301 uridine kinase; Provi 97.2 0.00036 7.7E-09 57.4 3.6 23 163-185 3-25 (210)
63 PRK14088 dnaA chromosomal repl 97.2 0.00062 1.3E-08 62.3 5.6 48 163-221 130-179 (440)
64 COG0466 Lon ATP-dependent Lon 97.2 0.0011 2.3E-08 62.7 7.1 47 145-193 328-378 (782)
65 PRK00149 dnaA chromosomal repl 97.2 0.0013 2.7E-08 60.5 7.5 29 162-192 147-175 (450)
66 PF00485 PRK: Phosphoribulokin 97.2 0.00032 6.9E-09 56.9 3.2 21 165-185 1-21 (194)
67 TIGR00235 udk uridine kinase. 97.2 0.00039 8.4E-09 57.0 3.7 25 161-185 4-28 (207)
68 PRK06526 transposase; Provisio 97.2 0.00069 1.5E-08 57.4 5.3 22 164-185 99-120 (254)
69 PRK09354 recA recombinase A; P 97.2 0.002 4.3E-08 56.8 8.1 88 161-258 58-147 (349)
70 PRK05480 uridine/cytidine kina 97.1 0.00037 8.1E-09 57.1 3.4 24 162-185 5-28 (209)
71 PRK09183 transposase/IS protei 97.1 0.0011 2.4E-08 56.3 6.2 22 164-185 103-124 (259)
72 PRK06835 DNA replication prote 97.1 0.002 4.4E-08 56.6 8.0 53 145-199 165-217 (329)
73 PRK08084 DNA replication initi 97.1 0.0011 2.3E-08 55.6 6.0 23 163-185 45-67 (235)
74 cd00983 recA RecA is a bacter 97.1 0.0019 4.2E-08 56.4 7.7 88 161-258 53-142 (325)
75 TIGR00362 DnaA chromosomal rep 97.1 0.0015 3.2E-08 59.2 7.3 24 163-186 136-159 (405)
76 PRK12422 chromosomal replicati 97.1 0.0011 2.4E-08 60.7 6.4 23 163-185 141-163 (445)
77 PRK08233 hypothetical protein; 97.1 0.00046 1E-08 55.0 3.4 24 163-186 3-26 (182)
78 TIGR02903 spore_lon_C ATP-depe 97.1 0.002 4.2E-08 61.5 8.0 111 145-260 159-303 (615)
79 PF00308 Bac_DnaA: Bacterial d 97.1 0.0021 4.5E-08 53.3 7.3 24 162-185 33-56 (219)
80 PLN03187 meiotic recombination 97.1 0.0031 6.7E-08 55.7 8.7 100 155-258 118-230 (344)
81 COG0572 Udk Uridine kinase [Nu 97.1 0.0016 3.5E-08 53.4 6.4 25 161-185 6-30 (218)
82 PRK12402 replication factor C 97.1 0.0031 6.7E-08 55.4 8.7 39 145-185 20-58 (337)
83 TIGR00959 ffh signal recogniti 97.1 0.0042 9E-08 56.5 9.5 41 145-185 74-121 (428)
84 PRK14087 dnaA chromosomal repl 97.0 0.0016 3.6E-08 59.7 6.9 23 163-185 141-163 (450)
85 cd01120 RecA-like_NTPases RecA 97.0 0.0034 7.3E-08 48.5 7.8 40 165-209 1-40 (165)
86 cd02025 PanK Pantothenate kina 97.0 0.0024 5.2E-08 52.9 7.3 21 165-185 1-21 (220)
87 PRK06921 hypothetical protein; 97.0 0.0017 3.6E-08 55.4 6.5 35 163-199 117-152 (266)
88 PLN03186 DNA repair protein RA 97.0 0.0052 1.1E-07 54.3 9.7 101 154-258 114-227 (342)
89 PF13238 AAA_18: AAA domain; P 97.0 0.00051 1.1E-08 51.2 2.9 21 166-186 1-21 (129)
90 CHL00095 clpC Clp protease ATP 97.0 0.0018 3.9E-08 63.8 7.4 39 145-185 184-222 (821)
91 TIGR00602 rad24 checkpoint pro 97.0 0.0015 3.1E-08 62.2 6.3 41 145-185 89-132 (637)
92 COG0468 RecA RecA/RadA recombi 97.0 0.006 1.3E-07 52.2 9.3 98 155-258 52-150 (279)
93 PRK10787 DNA-binding ATP-depen 97.0 0.0085 1.8E-07 58.7 11.6 41 145-185 327-371 (784)
94 TIGR02238 recomb_DMC1 meiotic 97.0 0.0047 1E-07 54.0 8.9 100 155-258 88-200 (313)
95 COG2909 MalT ATP-dependent tra 97.0 0.009 1.9E-07 57.6 11.3 103 149-258 24-138 (894)
96 PRK08939 primosomal protein Dn 97.0 0.0045 9.8E-08 53.9 8.7 42 145-186 136-179 (306)
97 TIGR02639 ClpA ATP-dependent C 97.0 0.0025 5.5E-08 62.0 7.9 39 145-185 187-225 (731)
98 PF12775 AAA_7: P-loop contain 97.0 0.00096 2.1E-08 57.1 4.4 34 149-185 22-55 (272)
99 PRK06547 hypothetical protein; 97.0 0.0013 2.8E-08 52.4 4.8 26 161-186 13-38 (172)
100 PF01695 IstB_IS21: IstB-like 97.0 0.00094 2E-08 53.5 4.0 45 163-218 47-91 (178)
101 PRK03992 proteasome-activating 97.0 0.0022 4.7E-08 57.8 6.8 42 145-186 136-188 (389)
102 PF13671 AAA_33: AAA domain; P 96.9 0.0008 1.7E-08 51.3 3.4 21 165-185 1-21 (143)
103 COG1484 DnaC DNA replication p 96.9 0.0028 6.1E-08 53.7 6.9 50 162-222 104-153 (254)
104 PRK10867 signal recognition pa 96.9 0.0058 1.3E-07 55.6 9.3 39 145-183 75-120 (433)
105 TIGR00763 lon ATP-dependent pr 96.9 0.019 4.2E-07 56.4 13.6 86 98-185 264-369 (775)
106 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0058 1.3E-07 53.5 8.9 101 154-258 87-200 (316)
107 PRK05642 DNA replication initi 96.9 0.0013 2.8E-08 55.0 4.6 35 163-199 45-79 (234)
108 PRK00771 signal recognition pa 96.9 0.008 1.7E-07 54.8 10.0 41 145-185 71-117 (437)
109 PF08423 Rad51: Rad51; InterP 96.9 0.0038 8.3E-08 52.9 7.5 94 161-258 36-142 (256)
110 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00099 2.2E-08 58.8 4.0 54 145-198 56-118 (361)
111 PLN03025 replication factor C 96.9 0.0051 1.1E-07 53.9 8.5 38 146-185 19-56 (319)
112 TIGR02236 recomb_radA DNA repa 96.9 0.0066 1.4E-07 52.9 9.1 65 155-223 87-155 (310)
113 cd02019 NK Nucleoside/nucleoti 96.9 0.00076 1.6E-08 45.1 2.5 22 165-186 1-22 (69)
114 TIGR03689 pup_AAA proteasome A 96.9 0.0017 3.6E-08 60.2 5.3 42 145-186 187-239 (512)
115 PLN00020 ribulose bisphosphate 96.9 0.0019 4.1E-08 57.1 5.4 26 161-186 146-171 (413)
116 PRK06762 hypothetical protein; 96.9 0.00092 2E-08 52.6 3.2 23 163-185 2-24 (166)
117 PHA02544 44 clamp loader, smal 96.8 0.007 1.5E-07 52.8 8.9 41 145-186 26-66 (316)
118 PRK05564 DNA polymerase III su 96.8 0.012 2.6E-07 51.4 10.3 72 146-222 10-86 (313)
119 TIGR01360 aden_kin_iso1 adenyl 96.8 0.00092 2E-08 53.5 3.0 24 162-185 2-25 (188)
120 cd02023 UMPK Uridine monophosp 96.8 0.00078 1.7E-08 54.7 2.4 21 165-185 1-21 (198)
121 COG4608 AppF ABC-type oligopep 96.8 0.0062 1.3E-07 51.4 7.8 92 162-257 38-135 (268)
122 PF00448 SRP54: SRP54-type pro 96.8 0.0029 6.4E-08 51.4 5.7 22 163-184 1-22 (196)
123 COG2255 RuvB Holliday junction 96.8 0.002 4.4E-08 54.6 4.8 29 159-187 48-76 (332)
124 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0077 1.7E-07 56.1 8.8 43 145-187 195-247 (802)
125 cd03115 SRP The signal recogni 96.8 0.0039 8.5E-08 49.4 6.2 22 164-185 1-22 (173)
126 PRK14738 gmk guanylate kinase; 96.8 0.0013 2.8E-08 53.9 3.4 31 155-185 5-35 (206)
127 PRK08149 ATP synthase SpaL; Va 96.8 0.0059 1.3E-07 55.4 7.8 90 162-258 150-250 (428)
128 TIGR00554 panK_bact pantothena 96.8 0.0046 1E-07 53.3 6.9 25 161-185 60-84 (290)
129 PRK03839 putative kinase; Prov 96.8 0.0011 2.3E-08 53.0 2.8 22 165-186 2-23 (180)
130 COG1102 Cmk Cytidylate kinase 96.7 0.0018 3.9E-08 50.4 3.9 45 165-225 2-46 (179)
131 PTZ00361 26 proteosome regulat 96.7 0.0034 7.3E-08 57.3 6.2 41 145-185 188-239 (438)
132 PTZ00035 Rad51 protein; Provis 96.7 0.014 3.1E-07 51.5 10.0 101 154-258 109-222 (337)
133 PRK00440 rfc replication facto 96.7 0.013 2.7E-07 51.0 9.7 40 145-186 22-61 (319)
134 PRK12724 flagellar biosynthesi 96.7 0.0047 1E-07 55.7 6.9 23 163-185 223-245 (432)
135 PRK05439 pantothenate kinase; 96.7 0.012 2.6E-07 51.2 9.2 25 161-185 84-108 (311)
136 PRK14957 DNA polymerase III su 96.7 0.009 1.9E-07 56.0 8.9 40 145-185 21-60 (546)
137 PRK14949 DNA polymerase III su 96.7 0.0082 1.8E-07 58.8 8.9 40 145-185 21-60 (944)
138 PRK11889 flhF flagellar biosyn 96.7 0.012 2.6E-07 52.8 9.1 24 162-185 240-263 (436)
139 KOG2227 Pre-initiation complex 96.7 0.013 2.8E-07 53.0 9.3 107 145-258 155-265 (529)
140 PRK05703 flhF flagellar biosyn 96.7 0.0095 2.1E-07 54.3 8.7 23 163-185 221-243 (424)
141 cd01121 Sms Sms (bacterial rad 96.7 0.01 2.2E-07 53.1 8.8 97 151-258 70-167 (372)
142 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0032 6.9E-08 47.8 4.7 24 163-186 22-45 (133)
143 PRK04040 adenylate kinase; Pro 96.7 0.0015 3.3E-08 52.7 3.2 23 163-185 2-24 (188)
144 cd02027 APSK Adenosine 5'-phos 96.7 0.0047 1E-07 47.9 5.8 21 165-185 1-21 (149)
145 PRK08972 fliI flagellum-specif 96.7 0.0047 1E-07 56.0 6.4 90 162-258 161-261 (444)
146 PRK14722 flhF flagellar biosyn 96.6 0.0064 1.4E-07 54.2 7.1 23 163-185 137-159 (374)
147 PRK14961 DNA polymerase III su 96.6 0.018 4E-07 51.4 10.1 40 145-185 21-60 (363)
148 TIGR02322 phosphon_PhnN phosph 96.6 0.0016 3.5E-08 51.9 3.0 22 164-185 2-23 (179)
149 PRK14962 DNA polymerase III su 96.6 0.015 3.3E-07 53.7 9.7 38 147-185 21-58 (472)
150 PTZ00454 26S protease regulato 96.6 0.003 6.4E-08 57.0 4.9 25 162-186 178-202 (398)
151 TIGR03263 guanyl_kin guanylate 96.6 0.0017 3.7E-08 51.7 3.0 22 164-185 2-23 (180)
152 COG1120 FepC ABC-type cobalami 96.6 0.0091 2E-07 50.4 7.5 24 162-185 27-50 (258)
153 PRK14963 DNA polymerase III su 96.6 0.009 2E-07 55.6 8.1 41 145-186 19-59 (504)
154 PRK10865 protein disaggregatio 96.6 0.007 1.5E-07 59.9 7.8 39 145-185 183-221 (857)
155 PRK06002 fliI flagellum-specif 96.6 0.0085 1.8E-07 54.6 7.6 90 162-258 164-263 (450)
156 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.016 3.5E-07 48.5 8.9 59 152-217 10-68 (237)
157 cd02020 CMPK Cytidine monophos 96.6 0.0015 3.2E-08 50.0 2.4 21 165-185 1-21 (147)
158 TIGR02880 cbbX_cfxQ probable R 96.6 0.0058 1.3E-07 52.6 6.3 22 164-185 59-80 (284)
159 PTZ00088 adenylate kinase 1; P 96.6 0.0034 7.3E-08 52.3 4.7 21 165-185 8-28 (229)
160 COG1124 DppF ABC-type dipeptid 96.6 0.003 6.5E-08 52.4 4.2 24 162-185 32-55 (252)
161 KOG0735 AAA+-type ATPase [Post 96.6 0.0065 1.4E-07 57.6 6.8 25 163-187 431-455 (952)
162 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0076 1.6E-07 59.7 7.8 39 145-185 178-216 (852)
163 CHL00181 cbbX CbbX; Provisiona 96.5 0.0071 1.5E-07 52.2 6.6 23 163-185 59-81 (287)
164 PRK12727 flagellar biosynthesi 96.5 0.0068 1.5E-07 56.2 6.8 24 162-185 349-372 (559)
165 cd02024 NRK1 Nicotinamide ribo 96.5 0.0016 3.4E-08 52.6 2.4 22 165-186 1-22 (187)
166 PLN02318 phosphoribulokinase/u 96.5 0.0035 7.6E-08 58.7 4.9 32 154-185 56-87 (656)
167 PRK00131 aroK shikimate kinase 96.5 0.002 4.4E-08 50.8 3.0 24 163-186 4-27 (175)
168 PF08433 KTI12: Chromatin asso 96.5 0.0048 1E-07 52.7 5.4 22 164-185 2-23 (270)
169 PRK00625 shikimate kinase; Pro 96.5 0.0018 3.9E-08 51.6 2.7 21 165-185 2-22 (173)
170 PRK10751 molybdopterin-guanine 96.5 0.0023 5.1E-08 50.8 3.3 24 162-185 5-28 (173)
171 cd00071 GMPK Guanosine monopho 96.5 0.0022 4.7E-08 49.1 3.0 22 165-186 1-22 (137)
172 cd02028 UMPK_like Uridine mono 96.5 0.0017 3.7E-08 52.0 2.5 21 165-185 1-21 (179)
173 PF03205 MobB: Molybdopterin g 96.5 0.0024 5.2E-08 49.0 3.2 34 164-199 1-35 (140)
174 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0017 3.6E-08 51.9 2.4 21 165-185 1-21 (183)
175 TIGR02881 spore_V_K stage V sp 96.5 0.0045 9.7E-08 52.6 5.1 25 161-185 40-64 (261)
176 PRK00300 gmk guanylate kinase; 96.5 0.0021 4.5E-08 52.4 2.9 24 163-186 5-28 (205)
177 PRK09087 hypothetical protein; 96.5 0.011 2.3E-07 49.3 7.1 24 163-186 44-67 (226)
178 PF05673 DUF815: Protein of un 96.5 0.018 4E-07 48.1 8.4 40 145-185 32-74 (249)
179 cd01135 V_A-ATPase_B V/A-type 96.5 0.01 2.2E-07 50.6 7.0 93 163-258 69-175 (276)
180 PRK06067 flagellar accessory p 96.5 0.014 3E-07 48.7 7.8 97 154-258 16-129 (234)
181 CHL00176 ftsH cell division pr 96.5 0.0088 1.9E-07 57.2 7.2 42 145-186 191-239 (638)
182 PRK00889 adenylylsulfate kinas 96.5 0.0028 6.2E-08 50.3 3.4 24 162-185 3-26 (175)
183 TIGR00064 ftsY signal recognit 96.4 0.027 5.9E-07 48.2 9.6 25 161-185 70-94 (272)
184 PRK10078 ribose 1,5-bisphospho 96.4 0.0026 5.6E-08 51.2 3.1 23 164-186 3-25 (186)
185 PRK12723 flagellar biosynthesi 96.4 0.022 4.8E-07 51.2 9.2 24 162-185 173-196 (388)
186 PRK15455 PrkA family serine pr 96.4 0.0041 8.9E-08 58.1 4.6 41 145-185 81-125 (644)
187 PRK12597 F0F1 ATP synthase sub 96.4 0.0081 1.8E-07 55.0 6.5 93 162-258 142-246 (461)
188 cd01136 ATPase_flagellum-secre 96.4 0.014 3E-07 51.1 7.7 89 163-258 69-168 (326)
189 PF00154 RecA: recA bacterial 96.4 0.0098 2.1E-07 51.9 6.7 88 161-258 51-140 (322)
190 PRK12678 transcription termina 96.4 0.0046 1E-07 57.6 4.9 89 163-258 416-512 (672)
191 PRK06217 hypothetical protein; 96.4 0.0024 5.2E-08 51.2 2.7 23 164-186 2-24 (183)
192 PRK08927 fliI flagellum-specif 96.4 0.011 2.3E-07 53.9 7.1 90 162-258 157-257 (442)
193 PRK09519 recA DNA recombinatio 96.4 0.017 3.6E-07 56.2 8.7 95 154-258 50-147 (790)
194 PF07726 AAA_3: ATPase family 96.4 0.0029 6.3E-08 47.5 2.8 27 166-194 2-28 (131)
195 PRK14974 cell division protein 96.4 0.031 6.7E-07 49.3 9.7 24 162-185 139-162 (336)
196 PRK13947 shikimate kinase; Pro 96.4 0.0025 5.4E-08 50.3 2.7 21 165-185 3-23 (171)
197 cd02021 GntK Gluconate kinase 96.4 0.0025 5.5E-08 49.2 2.5 22 165-186 1-22 (150)
198 PRK03846 adenylylsulfate kinas 96.4 0.0034 7.4E-08 51.0 3.4 25 161-185 22-46 (198)
199 TIGR03345 VI_ClpV1 type VI sec 96.3 0.0037 8.1E-08 61.7 4.2 39 145-185 192-230 (852)
200 COG0467 RAD55 RecA-superfamily 96.3 0.0043 9.2E-08 52.7 4.1 93 158-258 18-133 (260)
201 PRK14958 DNA polymerase III su 96.3 0.027 5.9E-07 52.5 9.6 40 145-185 21-60 (509)
202 PF00625 Guanylate_kin: Guanyl 96.3 0.0037 8.1E-08 50.1 3.5 35 163-199 2-36 (183)
203 PF08477 Miro: Miro-like prote 96.3 0.0035 7.7E-08 46.0 3.1 22 166-187 2-23 (119)
204 PRK12726 flagellar biosynthesi 96.3 0.021 4.5E-07 51.0 8.3 24 162-185 205-228 (407)
205 PRK13949 shikimate kinase; Pro 96.3 0.0029 6.3E-08 50.2 2.7 21 165-185 3-23 (169)
206 PRK14086 dnaA chromosomal repl 96.3 0.013 2.9E-07 55.3 7.5 23 163-185 314-336 (617)
207 PRK14737 gmk guanylate kinase; 96.3 0.0054 1.2E-07 49.4 4.3 25 162-186 3-27 (186)
208 COG1419 FlhF Flagellar GTP-bin 96.3 0.0044 9.6E-08 55.2 4.0 41 145-185 183-226 (407)
209 PRK14960 DNA polymerase III su 96.3 0.029 6.3E-07 53.5 9.6 40 145-185 20-59 (702)
210 PF07728 AAA_5: AAA domain (dy 96.3 0.0034 7.5E-08 47.7 2.9 41 166-215 2-43 (139)
211 cd00820 PEPCK_HprK Phosphoenol 96.3 0.004 8.6E-08 45.4 3.1 22 163-184 15-36 (107)
212 PRK04296 thymidine kinase; Pro 96.3 0.0057 1.2E-07 49.5 4.3 22 164-185 3-24 (190)
213 PRK14723 flhF flagellar biosyn 96.3 0.037 8.1E-07 53.7 10.4 23 163-185 185-207 (767)
214 KOG0744 AAA+-type ATPase [Post 96.3 0.0093 2E-07 51.6 5.7 29 162-190 176-204 (423)
215 COG1116 TauB ABC-type nitrate/ 96.3 0.0034 7.4E-08 52.3 3.0 23 163-185 29-51 (248)
216 PRK13975 thymidylate kinase; P 96.3 0.0037 7.9E-08 50.5 3.1 22 164-185 3-24 (196)
217 cd01672 TMPK Thymidine monopho 96.3 0.0082 1.8E-07 48.2 5.1 21 165-185 2-22 (200)
218 PF00005 ABC_tran: ABC transpo 96.3 0.004 8.7E-08 47.1 3.1 23 163-185 11-33 (137)
219 cd00464 SK Shikimate kinase (S 96.3 0.0034 7.3E-08 48.5 2.7 20 166-185 2-21 (154)
220 PRK07003 DNA polymerase III su 96.3 0.039 8.3E-07 53.4 10.2 40 145-185 21-60 (830)
221 PF03308 ArgK: ArgK protein; 96.3 0.0079 1.7E-07 50.6 5.0 38 148-185 14-51 (266)
222 cd00227 CPT Chloramphenicol (C 96.2 0.0035 7.5E-08 49.9 2.8 23 164-186 3-25 (175)
223 PRK04328 hypothetical protein; 96.2 0.02 4.3E-07 48.4 7.6 48 154-206 14-61 (249)
224 PRK14530 adenylate kinase; Pro 96.2 0.0034 7.3E-08 51.7 2.8 21 165-185 5-25 (215)
225 PRK05688 fliI flagellum-specif 96.2 0.0096 2.1E-07 54.3 5.9 90 162-258 167-267 (451)
226 TIGR01241 FtsH_fam ATP-depende 96.2 0.0083 1.8E-07 55.8 5.7 23 164-186 89-111 (495)
227 COG0563 Adk Adenylate kinase a 96.2 0.0034 7.4E-08 50.2 2.7 22 165-186 2-23 (178)
228 cd01131 PilT Pilus retraction 96.2 0.0049 1.1E-07 50.2 3.7 22 164-185 2-23 (198)
229 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.046 9.9E-07 45.3 9.6 43 155-199 12-54 (229)
230 TIGR02640 gas_vesic_GvpN gas v 96.2 0.018 4E-07 48.9 7.3 37 145-185 7-43 (262)
231 PRK11823 DNA repair protein Ra 96.2 0.033 7.2E-07 51.1 9.5 97 151-258 68-165 (446)
232 TIGR01313 therm_gnt_kin carboh 96.2 0.0029 6.2E-08 49.6 2.2 21 166-186 1-21 (163)
233 PRK14721 flhF flagellar biosyn 96.2 0.025 5.5E-07 51.3 8.4 24 162-185 190-213 (420)
234 PF00910 RNA_helicase: RNA hel 96.2 0.0027 5.8E-08 46.3 1.8 20 166-185 1-20 (107)
235 PRK09435 membrane ATPase/prote 96.2 0.009 1.9E-07 52.5 5.4 37 149-185 42-78 (332)
236 TIGR01425 SRP54_euk signal rec 96.2 0.032 7E-07 50.6 9.1 40 145-184 75-121 (429)
237 PRK08472 fliI flagellum-specif 96.2 0.017 3.7E-07 52.5 7.3 25 162-186 156-180 (434)
238 PRK07960 fliI flagellum-specif 96.2 0.008 1.7E-07 54.7 5.2 25 162-186 174-198 (455)
239 PF01583 APS_kinase: Adenylyls 96.2 0.0051 1.1E-07 48.0 3.4 23 163-185 2-24 (156)
240 TIGR03496 FliI_clade1 flagella 96.2 0.013 2.9E-07 53.0 6.5 90 162-258 136-236 (411)
241 PRK11034 clpA ATP-dependent Cl 96.2 0.015 3.3E-07 56.6 7.3 39 145-185 191-229 (758)
242 TIGR02655 circ_KaiC circadian 96.2 0.022 4.8E-07 52.9 8.0 102 149-258 249-362 (484)
243 COG1936 Predicted nucleotide k 96.2 0.0039 8.4E-08 49.1 2.5 20 165-184 2-21 (180)
244 PRK09099 type III secretion sy 96.1 0.018 3.8E-07 52.6 7.1 90 162-258 162-262 (441)
245 COG1428 Deoxynucleoside kinase 96.1 0.0042 9.1E-08 50.5 2.8 24 163-186 4-27 (216)
246 TIGR00041 DTMP_kinase thymidyl 96.1 0.034 7.4E-07 44.8 8.2 22 164-185 4-25 (195)
247 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.011 2.3E-07 54.0 5.7 93 162-258 137-241 (449)
248 PRK05922 type III secretion sy 96.1 0.023 4.9E-07 51.7 7.7 89 163-258 157-256 (434)
249 TIGR00073 hypB hydrogenase acc 96.1 0.0051 1.1E-07 50.4 3.3 25 161-185 20-44 (207)
250 PF00006 ATP-synt_ab: ATP synt 96.1 0.0077 1.7E-07 49.7 4.3 88 164-258 16-114 (215)
251 PRK07594 type III secretion sy 96.1 0.024 5.2E-07 51.5 7.8 90 162-258 154-254 (433)
252 PRK14969 DNA polymerase III su 96.1 0.049 1.1E-06 51.1 10.1 40 145-185 21-60 (527)
253 PRK06793 fliI flagellum-specif 96.1 0.019 4.1E-07 52.2 7.1 90 162-258 155-255 (432)
254 COG1126 GlnQ ABC-type polar am 96.1 0.005 1.1E-07 50.3 3.1 24 162-185 27-50 (240)
255 KOG1532 GTPase XAB1, interacts 96.1 0.0045 9.7E-08 52.3 2.8 26 161-186 17-42 (366)
256 TIGR00176 mobB molybdopterin-g 96.1 0.004 8.7E-08 48.7 2.4 21 165-185 1-21 (155)
257 PRK06936 type III secretion sy 96.1 0.022 4.9E-07 51.7 7.5 90 162-258 161-261 (439)
258 PRK07196 fliI flagellum-specif 96.1 0.02 4.4E-07 52.0 7.2 25 162-186 154-178 (434)
259 PRK14951 DNA polymerase III su 96.1 0.039 8.4E-07 52.5 9.3 40 145-185 21-60 (618)
260 TIGR00678 holB DNA polymerase 96.1 0.054 1.2E-06 43.4 9.0 34 151-185 3-36 (188)
261 TIGR02639 ClpA ATP-dependent C 96.1 0.012 2.5E-07 57.5 5.9 24 162-185 483-506 (731)
262 COG0194 Gmk Guanylate kinase [ 96.1 0.01 2.2E-07 47.3 4.5 25 163-187 4-28 (191)
263 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0055 1.2E-07 50.4 3.1 23 163-185 30-52 (218)
264 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0055 1.2E-07 50.2 3.1 23 163-185 27-49 (211)
265 PRK09280 F0F1 ATP synthase sub 96.0 0.014 3E-07 53.4 5.9 93 162-258 143-247 (463)
266 PRK05057 aroK shikimate kinase 96.0 0.0054 1.2E-07 48.7 2.9 22 164-185 5-26 (172)
267 PRK06645 DNA polymerase III su 96.0 0.052 1.1E-06 50.6 9.7 40 145-185 26-65 (507)
268 cd01132 F1_ATPase_alpha F1 ATP 96.0 0.025 5.4E-07 48.2 7.0 90 162-258 68-170 (274)
269 PTZ00185 ATPase alpha subunit; 96.0 0.029 6.3E-07 51.8 7.8 93 163-258 189-298 (574)
270 PRK08356 hypothetical protein; 96.0 0.0061 1.3E-07 49.4 3.2 21 163-183 5-25 (195)
271 PRK14527 adenylate kinase; Pro 96.0 0.0059 1.3E-07 49.3 3.1 24 162-185 5-28 (191)
272 COG0593 DnaA ATPase involved i 96.0 0.011 2.4E-07 53.2 5.0 31 162-194 112-142 (408)
273 PF03266 NTPase_1: NTPase; In 96.0 0.0052 1.1E-07 48.7 2.7 20 166-185 2-21 (168)
274 PRK08903 DnaA regulatory inact 96.0 0.011 2.3E-07 49.1 4.7 25 162-186 41-65 (227)
275 PRK06995 flhF flagellar biosyn 96.0 0.028 6.1E-07 51.8 7.7 23 163-185 256-278 (484)
276 COG3903 Predicted ATPase [Gene 96.0 0.0056 1.2E-07 54.5 3.0 84 162-258 13-97 (414)
277 PRK09825 idnK D-gluconate kina 96.0 0.0058 1.3E-07 48.8 2.9 22 164-185 4-25 (176)
278 TIGR03498 FliI_clade3 flagella 96.0 0.03 6.4E-07 50.8 7.7 90 162-258 139-239 (418)
279 PRK05800 cobU adenosylcobinami 96.0 0.035 7.7E-07 44.0 7.3 22 164-185 2-23 (170)
280 PRK12323 DNA polymerase III su 96.0 0.054 1.2E-06 51.6 9.6 40 145-185 21-60 (700)
281 COG1100 GTPase SAR1 and relate 96.0 0.0057 1.2E-07 50.1 2.9 24 164-187 6-29 (219)
282 PLN02348 phosphoribulokinase 96.0 0.0089 1.9E-07 53.4 4.2 26 160-185 46-71 (395)
283 TIGR00960 3a0501s02 Type II (G 96.0 0.006 1.3E-07 50.1 3.0 23 163-185 29-51 (216)
284 PRK08691 DNA polymerase III su 96.0 0.049 1.1E-06 52.2 9.4 40 145-185 21-60 (709)
285 TIGR00750 lao LAO/AO transport 96.0 0.0092 2E-07 51.8 4.3 35 151-185 22-56 (300)
286 PRK04182 cytidylate kinase; Pr 96.0 0.0061 1.3E-07 48.3 2.9 22 165-186 2-23 (180)
287 cd01130 VirB11-like_ATPase Typ 95.9 0.012 2.5E-07 47.4 4.6 37 146-185 11-47 (186)
288 cd04139 RalA_RalB RalA/RalB su 95.9 0.0075 1.6E-07 46.6 3.4 23 165-187 2-24 (164)
289 TIGR01243 CDC48 AAA family ATP 95.9 0.021 4.5E-07 55.8 7.1 41 145-185 183-234 (733)
290 COG0464 SpoVK ATPases of the A 95.9 0.02 4.4E-07 53.2 6.7 32 162-195 275-306 (494)
291 PLN02796 D-glycerate 3-kinase 95.9 0.007 1.5E-07 53.2 3.4 24 162-185 99-122 (347)
292 COG1136 SalX ABC-type antimicr 95.9 0.0066 1.4E-07 50.2 3.1 23 163-185 31-53 (226)
293 TIGR01166 cbiO cobalt transpor 95.9 0.0066 1.4E-07 48.9 3.0 23 163-185 18-40 (190)
294 cd03297 ABC_ModC_molybdenum_tr 95.9 0.0071 1.5E-07 49.6 3.3 24 161-185 22-45 (214)
295 PRK14970 DNA polymerase III su 95.9 0.063 1.4E-06 47.9 9.6 40 145-185 22-61 (367)
296 cd03229 ABC_Class3 This class 95.9 0.0069 1.5E-07 48.3 3.1 23 163-185 26-48 (178)
297 PRK10416 signal recognition pa 95.9 0.015 3.2E-07 51.0 5.3 24 162-185 113-136 (318)
298 PRK12339 2-phosphoglycerate ki 95.9 0.0075 1.6E-07 49.1 3.3 24 163-186 3-26 (197)
299 PLN02200 adenylate kinase fami 95.9 0.0075 1.6E-07 50.5 3.4 24 162-185 42-65 (234)
300 cd03238 ABC_UvrA The excision 95.9 0.0068 1.5E-07 48.4 3.0 23 163-185 21-43 (176)
301 COG2019 AdkA Archaeal adenylat 95.9 0.0081 1.8E-07 47.1 3.2 23 163-185 4-26 (189)
302 COG0237 CoaE Dephospho-CoA kin 95.9 0.007 1.5E-07 49.4 3.0 23 163-185 2-24 (201)
303 PRK13948 shikimate kinase; Pro 95.9 0.007 1.5E-07 48.6 3.0 24 162-185 9-32 (182)
304 COG4088 Predicted nucleotide k 95.9 0.0043 9.2E-08 50.4 1.7 22 164-185 2-23 (261)
305 TIGR00416 sms DNA repair prote 95.9 0.042 9E-07 50.6 8.4 99 149-258 80-179 (454)
306 PRK06761 hypothetical protein; 95.9 0.014 3E-07 50.1 4.9 23 164-186 4-26 (282)
307 cd03261 ABC_Org_Solvent_Resist 95.9 0.007 1.5E-07 50.5 3.1 23 163-185 26-48 (235)
308 PRK06620 hypothetical protein; 95.8 0.007 1.5E-07 49.9 2.9 23 164-186 45-67 (214)
309 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0074 1.6E-07 49.8 3.1 24 163-186 30-53 (220)
310 TIGR02673 FtsE cell division A 95.8 0.0075 1.6E-07 49.5 3.1 23 163-185 28-50 (214)
311 PRK07721 fliI flagellum-specif 95.8 0.031 6.7E-07 51.0 7.3 25 162-186 157-181 (438)
312 TIGR02173 cyt_kin_arch cytidyl 95.8 0.0075 1.6E-07 47.4 3.0 21 165-185 2-22 (171)
313 cd03116 MobB Molybdenum is an 95.8 0.0082 1.8E-07 47.1 3.1 22 164-185 2-23 (159)
314 PRK07994 DNA polymerase III su 95.8 0.05 1.1E-06 52.0 8.9 40 145-185 21-60 (647)
315 PF13521 AAA_28: AAA domain; P 95.8 0.0064 1.4E-07 47.7 2.5 21 166-186 2-22 (163)
316 PRK10463 hydrogenase nickel in 95.8 0.023 4.9E-07 48.9 5.9 25 161-185 102-126 (290)
317 cd03269 ABC_putative_ATPase Th 95.8 0.0078 1.7E-07 49.2 3.1 24 163-186 26-49 (210)
318 TIGR02315 ABC_phnC phosphonate 95.8 0.0075 1.6E-07 50.5 3.0 23 163-185 28-50 (243)
319 cd03263 ABC_subfamily_A The AB 95.8 0.0077 1.7E-07 49.6 3.1 23 163-185 28-50 (220)
320 PRK13695 putative NTPase; Prov 95.8 0.0073 1.6E-07 47.9 2.8 22 165-186 2-23 (174)
321 cd03222 ABC_RNaseL_inhibitor T 95.8 0.0078 1.7E-07 48.1 3.0 23 163-185 25-47 (177)
322 PRK01184 hypothetical protein; 95.8 0.0077 1.7E-07 48.2 2.9 19 164-182 2-20 (184)
323 cd03256 ABC_PhnC_transporter A 95.8 0.0077 1.7E-07 50.3 3.0 23 163-185 27-49 (241)
324 PF03029 ATP_bind_1: Conserved 95.8 0.0058 1.3E-07 51.2 2.2 19 168-186 1-19 (238)
325 PRK13946 shikimate kinase; Pro 95.8 0.0073 1.6E-07 48.5 2.7 23 163-185 10-32 (184)
326 cd03259 ABC_Carb_Solutes_like 95.8 0.0082 1.8E-07 49.2 3.1 23 163-185 26-48 (213)
327 TIGR01026 fliI_yscN ATPase Fli 95.8 0.027 5.9E-07 51.4 6.7 25 162-186 162-186 (440)
328 cd03260 ABC_PstB_phosphate_tra 95.8 0.0083 1.8E-07 49.7 3.1 23 163-185 26-48 (227)
329 PF07693 KAP_NTPase: KAP famil 95.8 0.04 8.7E-07 48.1 7.6 75 146-223 2-82 (325)
330 PF01926 MMR_HSR1: 50S ribosom 95.8 0.0098 2.1E-07 43.7 3.2 21 166-186 2-22 (116)
331 PF03193 DUF258: Protein of un 95.8 0.019 4E-07 45.1 4.8 34 148-186 25-58 (161)
332 cd03292 ABC_FtsE_transporter F 95.7 0.0086 1.9E-07 49.1 3.1 24 163-186 27-50 (214)
333 cd03235 ABC_Metallic_Cations A 95.7 0.0082 1.8E-07 49.2 2.9 23 163-185 25-47 (213)
334 cd03226 ABC_cobalt_CbiO_domain 95.7 0.0086 1.9E-07 48.8 3.0 23 163-185 26-48 (205)
335 PRK10584 putative ABC transpor 95.7 0.0086 1.9E-07 49.6 3.1 23 163-185 36-58 (228)
336 PRK13541 cytochrome c biogenes 95.7 0.0089 1.9E-07 48.4 3.1 24 163-186 26-49 (195)
337 cd03224 ABC_TM1139_LivF_branch 95.7 0.0091 2E-07 49.2 3.2 23 163-185 26-48 (222)
338 TIGR03864 PQQ_ABC_ATP ABC tran 95.7 0.0087 1.9E-07 49.9 3.1 23 163-185 27-49 (236)
339 cd03296 ABC_CysA_sulfate_impor 95.7 0.0087 1.9E-07 50.0 3.0 23 163-185 28-50 (239)
340 PF10662 PduV-EutP: Ethanolami 95.7 0.0097 2.1E-07 45.7 3.0 24 164-187 2-25 (143)
341 PRK05342 clpX ATP-dependent pr 95.7 0.018 3.9E-07 52.2 5.2 22 164-185 109-130 (412)
342 cd01862 Rab7 Rab7 subfamily. 95.7 0.0093 2E-07 46.6 3.0 22 165-186 2-23 (172)
343 cd03265 ABC_DrrA DrrA is the A 95.7 0.0092 2E-07 49.2 3.1 23 163-185 26-48 (220)
344 cd04163 Era Era subfamily. Er 95.7 0.012 2.6E-07 45.2 3.6 24 163-186 3-26 (168)
345 PRK14493 putative bifunctional 95.7 0.0087 1.9E-07 51.2 3.0 22 164-185 2-23 (274)
346 TIGR03497 FliI_clade2 flagella 95.7 0.031 6.7E-07 50.7 6.7 90 162-258 136-236 (413)
347 cd03264 ABC_drug_resistance_li 95.7 0.0082 1.8E-07 49.1 2.8 21 165-185 27-47 (211)
348 TIGR02211 LolD_lipo_ex lipopro 95.7 0.0093 2E-07 49.2 3.1 23 163-185 31-53 (221)
349 cd03257 ABC_NikE_OppD_transpor 95.7 0.0091 2E-07 49.4 3.0 23 163-185 31-53 (228)
350 smart00173 RAS Ras subfamily o 95.7 0.012 2.5E-07 45.8 3.4 22 165-186 2-23 (164)
351 KOG1969 DNA replication checkp 95.7 0.032 6.9E-07 53.2 6.7 54 161-222 324-377 (877)
352 PRK05896 DNA polymerase III su 95.7 0.071 1.5E-06 50.5 9.1 40 145-185 21-60 (605)
353 TIGR03608 L_ocin_972_ABC putat 95.7 0.0098 2.1E-07 48.4 3.1 23 163-185 24-46 (206)
354 cd01428 ADK Adenylate kinase ( 95.7 0.0086 1.9E-07 48.1 2.7 21 166-186 2-22 (194)
355 TIGR03574 selen_PSTK L-seryl-t 95.6 0.0075 1.6E-07 50.8 2.4 21 165-185 1-21 (249)
356 TIGR01040 V-ATPase_V1_B V-type 95.6 0.035 7.7E-07 50.6 6.8 93 163-258 141-256 (466)
357 cd02022 DPCK Dephospho-coenzym 95.6 0.008 1.7E-07 48.0 2.4 21 165-185 1-21 (179)
358 PRK13538 cytochrome c biogenes 95.6 0.0099 2.2E-07 48.5 3.0 23 163-185 27-49 (204)
359 PRK14532 adenylate kinase; Pro 95.6 0.0088 1.9E-07 48.0 2.7 20 166-185 3-22 (188)
360 COG0703 AroK Shikimate kinase 95.6 0.0092 2E-07 47.2 2.7 21 165-185 4-24 (172)
361 TIGR01041 ATP_syn_B_arch ATP s 95.6 0.032 7E-07 51.1 6.6 93 163-258 141-247 (458)
362 PRK10247 putative ABC transpor 95.6 0.01 2.2E-07 49.2 3.1 24 163-186 33-56 (225)
363 PRK11629 lolD lipoprotein tran 95.6 0.01 2.2E-07 49.5 3.1 23 163-185 35-57 (233)
364 cd03258 ABC_MetN_methionine_tr 95.6 0.01 2.2E-07 49.4 3.1 23 163-185 31-53 (233)
365 PRK15177 Vi polysaccharide exp 95.6 0.01 2.2E-07 48.9 3.0 23 163-185 13-35 (213)
366 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.01 2.2E-07 50.1 3.1 24 163-186 25-48 (246)
367 PRK11248 tauB taurine transpor 95.6 0.01 2.2E-07 50.3 3.1 23 163-185 27-49 (255)
368 PRK03731 aroL shikimate kinase 95.6 0.0094 2E-07 47.0 2.7 22 164-185 3-24 (171)
369 PRK00698 tmk thymidylate kinas 95.6 0.011 2.3E-07 48.0 3.1 22 164-185 4-25 (205)
370 cd04155 Arl3 Arl3 subfamily. 95.6 0.0098 2.1E-07 46.7 2.8 25 162-186 13-37 (173)
371 cd02026 PRK Phosphoribulokinas 95.6 0.0081 1.8E-07 51.5 2.5 21 165-185 1-21 (273)
372 cd04119 RJL RJL (RabJ-Like) su 95.6 0.011 2.4E-07 45.8 3.1 21 166-186 3-23 (168)
373 TIGR02546 III_secr_ATP type II 95.6 0.082 1.8E-06 48.1 9.0 90 162-258 144-244 (422)
374 PRK14952 DNA polymerase III su 95.6 0.096 2.1E-06 49.6 9.8 40 145-185 18-57 (584)
375 TIGR01287 nifH nitrogenase iro 95.6 0.0085 1.8E-07 51.2 2.6 21 164-184 1-21 (275)
376 smart00072 GuKc Guanylate kina 95.6 0.014 3.1E-07 46.8 3.7 24 163-186 2-25 (184)
377 cd04159 Arl10_like Arl10-like 95.6 0.013 2.9E-07 44.6 3.5 21 166-186 2-22 (159)
378 cd03301 ABC_MalK_N The N-termi 95.6 0.011 2.4E-07 48.4 3.1 24 163-186 26-49 (213)
379 PRK10865 protein disaggregatio 95.6 0.058 1.3E-06 53.6 8.6 23 163-185 598-620 (857)
380 PRK14490 putative bifunctional 95.6 0.016 3.4E-07 51.9 4.3 24 162-185 4-27 (369)
381 PF10443 RNA12: RNA12 protein; 95.6 0.032 6.9E-07 50.3 6.1 51 145-197 1-52 (431)
382 COG1763 MobB Molybdopterin-gua 95.6 0.01 2.2E-07 46.6 2.7 23 163-185 2-24 (161)
383 COG1703 ArgK Putative periplas 95.6 0.015 3.2E-07 49.8 3.8 65 149-216 37-101 (323)
384 cd04113 Rab4 Rab4 subfamily. 95.6 0.012 2.5E-07 45.7 3.1 21 166-186 3-23 (161)
385 PRK08154 anaerobic benzoate ca 95.6 0.019 4E-07 50.2 4.6 25 161-185 131-155 (309)
386 PRK07940 DNA polymerase III su 95.6 0.096 2.1E-06 47.3 9.3 40 146-185 11-58 (394)
387 cd03219 ABC_Mj1267_LivG_branch 95.6 0.01 2.2E-07 49.5 2.9 23 163-185 26-48 (236)
388 PRK10536 hypothetical protein; 95.6 0.02 4.4E-07 48.3 4.6 38 145-186 60-97 (262)
389 PF13086 AAA_11: AAA domain; P 95.6 0.015 3.2E-07 47.8 3.8 52 165-219 19-75 (236)
390 TIGR01184 ntrCD nitrate transp 95.6 0.011 2.4E-07 49.2 3.1 23 163-185 11-33 (230)
391 TIGR00231 small_GTP small GTP- 95.6 0.012 2.6E-07 44.6 3.1 23 165-187 3-25 (161)
392 COG3842 PotA ABC-type spermidi 95.5 0.01 2.2E-07 52.4 2.9 23 163-185 31-53 (352)
393 PRK14955 DNA polymerase III su 95.5 0.11 2.3E-06 47.0 9.7 40 145-185 21-60 (397)
394 PF13604 AAA_30: AAA domain; P 95.5 0.026 5.5E-07 45.9 5.1 22 164-185 19-40 (196)
395 smart00175 RAB Rab subfamily o 95.5 0.012 2.6E-07 45.5 3.1 21 166-186 3-23 (164)
396 cd00876 Ras Ras family. The R 95.5 0.014 3E-07 44.8 3.4 21 166-186 2-22 (160)
397 PRK08533 flagellar accessory p 95.5 0.028 6E-07 46.9 5.4 54 161-222 22-75 (230)
398 CHL00195 ycf46 Ycf46; Provisio 95.5 0.02 4.3E-07 53.1 4.9 24 163-186 259-282 (489)
399 cd03218 ABC_YhbG The ABC trans 95.5 0.011 2.5E-07 49.0 3.1 23 163-185 26-48 (232)
400 PRK14964 DNA polymerase III su 95.5 0.09 2E-06 48.7 9.1 39 146-185 19-57 (491)
401 PRK15453 phosphoribulokinase; 95.5 0.012 2.6E-07 50.3 3.2 24 162-185 4-27 (290)
402 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.012 2.7E-07 48.4 3.2 22 163-184 29-50 (213)
403 PRK08099 bifunctional DNA-bind 95.5 0.01 2.2E-07 53.6 2.9 25 161-185 217-241 (399)
404 PRK11124 artP arginine transpo 95.5 0.012 2.5E-07 49.4 3.1 24 163-186 28-51 (242)
405 PRK10908 cell division protein 95.5 0.012 2.5E-07 48.6 3.1 23 163-185 28-50 (222)
406 cd00544 CobU Adenosylcobinamid 95.5 0.11 2.3E-06 41.2 8.4 46 165-219 1-46 (169)
407 TIGR01978 sufC FeS assembly AT 95.5 0.012 2.5E-07 49.3 3.0 24 163-186 26-49 (243)
408 PRK11247 ssuB aliphatic sulfon 95.5 0.012 2.6E-07 50.0 3.1 23 163-185 38-60 (257)
409 cd00879 Sar1 Sar1 subfamily. 95.5 0.032 7E-07 44.5 5.5 24 163-186 19-42 (190)
410 PRK13540 cytochrome c biogenes 95.5 0.012 2.7E-07 47.7 3.1 25 162-186 26-50 (200)
411 cd03295 ABC_OpuCA_Osmoprotecti 95.5 0.012 2.6E-07 49.3 3.1 23 163-185 27-49 (242)
412 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.012 2.7E-07 49.5 3.0 23 163-185 30-52 (254)
413 cd03232 ABC_PDR_domain2 The pl 95.5 0.012 2.7E-07 47.4 3.0 23 163-185 33-55 (192)
414 PRK14531 adenylate kinase; Pro 95.5 0.012 2.6E-07 47.1 3.0 21 165-185 4-24 (183)
415 TIGR02770 nickel_nikD nickel i 95.5 0.012 2.6E-07 48.9 3.0 24 163-186 12-35 (230)
416 cd03268 ABC_BcrA_bacitracin_re 95.5 0.012 2.7E-07 47.9 3.1 23 163-185 26-48 (208)
417 COG1123 ATPase components of v 95.5 0.011 2.4E-07 54.8 3.0 23 163-185 317-339 (539)
418 PRK02496 adk adenylate kinase; 95.5 0.011 2.4E-07 47.3 2.7 21 165-185 3-23 (184)
419 TIGR00017 cmk cytidylate kinas 95.5 0.014 3E-07 48.3 3.3 22 164-185 3-24 (217)
420 TIGR01189 ccmA heme ABC export 95.5 0.013 2.8E-07 47.5 3.1 24 163-186 26-49 (198)
421 cd03262 ABC_HisP_GlnQ_permease 95.5 0.013 2.7E-07 48.0 3.1 23 163-185 26-48 (213)
422 PRK13539 cytochrome c biogenes 95.5 0.013 2.8E-07 47.9 3.1 25 162-186 27-51 (207)
423 cd04138 H_N_K_Ras_like H-Ras/N 95.4 0.013 2.9E-07 45.1 3.0 22 165-186 3-24 (162)
424 cd03266 ABC_NatA_sodium_export 95.4 0.013 2.8E-07 48.2 3.0 23 163-185 31-53 (218)
425 cd03246 ABCC_Protease_Secretio 95.4 0.014 3E-07 46.3 3.1 23 163-185 28-50 (173)
426 COG3640 CooC CO dehydrogenase 95.4 0.013 2.9E-07 48.4 3.0 20 165-184 2-21 (255)
427 PRK14247 phosphate ABC transpo 95.4 0.013 2.8E-07 49.4 3.1 23 163-185 29-51 (250)
428 TIGR02324 CP_lyasePhnL phospho 95.4 0.013 2.8E-07 48.4 3.1 23 163-185 34-56 (224)
429 PRK13768 GTPase; Provisional 95.4 0.013 2.9E-07 49.6 3.1 22 164-185 3-24 (253)
430 PRK14242 phosphate transporter 95.4 0.013 2.8E-07 49.4 3.1 23 163-185 32-54 (253)
431 PHA02530 pseT polynucleotide k 95.4 0.013 2.9E-07 50.6 3.2 22 164-185 3-24 (300)
432 cd03233 ABC_PDR_domain1 The pl 95.4 0.013 2.7E-07 47.8 2.9 24 163-186 33-56 (202)
433 TIGR00455 apsK adenylylsulfate 95.4 0.016 3.6E-07 46.3 3.5 24 162-185 17-40 (184)
434 PF13245 AAA_19: Part of AAA d 95.4 0.014 3.1E-07 39.7 2.7 23 163-185 10-33 (76)
435 TIGR00972 3a0107s01c2 phosphat 95.4 0.013 2.7E-07 49.3 3.0 23 163-185 27-49 (247)
436 PRK14250 phosphate ABC transpo 95.4 0.013 2.9E-07 49.1 3.1 23 163-185 29-51 (241)
437 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.014 3E-07 44.9 3.0 24 163-186 26-49 (144)
438 PF00071 Ras: Ras family; Int 95.4 0.015 3.3E-07 45.0 3.2 21 166-186 2-22 (162)
439 TIGR01243 CDC48 AAA family ATP 95.4 0.031 6.6E-07 54.7 5.9 24 163-186 487-510 (733)
440 PLN03046 D-glycerate 3-kinase; 95.4 0.016 3.5E-07 52.2 3.7 24 162-185 211-234 (460)
441 PLN02165 adenylate isopentenyl 95.4 0.014 3.1E-07 51.1 3.2 25 162-186 42-66 (334)
442 COG0470 HolB ATPase involved i 95.4 0.12 2.5E-06 45.0 9.1 40 146-185 7-46 (325)
443 cd00154 Rab Rab family. Rab G 95.4 0.015 3.2E-07 44.3 3.0 21 166-186 3-23 (159)
444 TIGR01039 atpD ATP synthase, F 95.4 0.047 1E-06 49.9 6.7 93 162-258 142-246 (461)
445 cd03223 ABCD_peroxisomal_ALDP 95.4 0.015 3.1E-07 45.9 3.1 24 163-186 27-50 (166)
446 cd01864 Rab19 Rab19 subfamily. 95.4 0.014 3E-07 45.5 3.0 24 163-186 3-26 (165)
447 cd03114 ArgK-like The function 95.4 0.012 2.7E-07 45.5 2.6 21 165-185 1-21 (148)
448 cd03278 ABC_SMC_barmotin Barmo 95.4 0.013 2.8E-07 47.6 2.9 20 165-184 24-43 (197)
449 PRK11300 livG leucine/isoleuci 95.4 0.014 3E-07 49.2 3.1 23 163-185 31-53 (255)
450 PRK09544 znuC high-affinity zi 95.4 0.014 3E-07 49.3 3.1 23 163-185 30-52 (251)
451 PRK11022 dppD dipeptide transp 95.4 0.013 2.9E-07 51.5 3.0 23 163-185 33-55 (326)
452 PRK14241 phosphate transporter 95.4 0.014 3E-07 49.4 3.1 23 163-185 30-52 (258)
453 PRK13230 nitrogenase reductase 95.3 0.013 2.8E-07 50.2 2.9 21 164-184 2-22 (279)
454 cd03230 ABC_DR_subfamily_A Thi 95.3 0.015 3.3E-07 46.1 3.1 24 163-186 26-49 (173)
455 cd01673 dNK Deoxyribonucleosid 95.3 0.012 2.5E-07 47.5 2.4 22 165-186 1-22 (193)
456 PRK06820 type III secretion sy 95.3 0.037 8.1E-07 50.4 5.9 24 163-186 163-186 (440)
457 cd01122 GP4d_helicase GP4d_hel 95.3 0.13 2.9E-06 43.6 9.1 53 162-220 29-81 (271)
458 PRK09493 glnQ glutamine ABC tr 95.3 0.014 3.1E-07 48.7 3.1 23 163-185 27-49 (240)
459 cd03252 ABCC_Hemolysin The ABC 95.3 0.014 3.1E-07 48.6 3.1 23 163-185 28-50 (237)
460 cd03214 ABC_Iron-Siderophores_ 95.3 0.015 3.3E-07 46.4 3.1 23 163-185 25-47 (180)
461 TIGR01277 thiQ thiamine ABC tr 95.3 0.015 3.2E-07 47.7 3.1 24 163-186 24-47 (213)
462 PRK14245 phosphate ABC transpo 95.3 0.015 3.2E-07 49.0 3.1 22 163-184 29-50 (250)
463 PRK14274 phosphate ABC transpo 95.3 0.015 3.2E-07 49.3 3.1 23 163-185 38-60 (259)
464 cd03247 ABCC_cytochrome_bd The 95.3 0.015 3.4E-07 46.2 3.1 24 163-186 28-51 (178)
465 COG4240 Predicted kinase [Gene 95.3 0.058 1.3E-06 44.6 6.3 26 161-186 48-73 (300)
466 PRK11264 putative amino-acid A 95.3 0.015 3.2E-07 48.9 3.1 23 163-185 29-51 (250)
467 TIGR03410 urea_trans_UrtE urea 95.3 0.014 3.1E-07 48.4 3.0 24 162-185 25-48 (230)
468 PF00406 ADK: Adenylate kinase 95.3 0.013 2.7E-07 45.4 2.5 18 168-185 1-18 (151)
469 cd03267 ABC_NatA_like Similar 95.3 0.015 3.2E-07 48.6 3.1 23 163-185 47-69 (236)
470 COG0541 Ffh Signal recognition 95.3 0.22 4.8E-06 44.9 10.5 41 145-185 75-122 (451)
471 PF00158 Sigma54_activat: Sigm 95.3 0.074 1.6E-06 42.1 6.8 51 164-221 23-74 (168)
472 cd01876 YihA_EngB The YihA (En 95.3 0.014 2.9E-07 45.1 2.6 20 166-185 2-21 (170)
473 PRK10575 iron-hydroxamate tran 95.3 0.014 3E-07 49.7 2.9 23 163-185 37-59 (265)
474 cd03215 ABC_Carb_Monos_II This 95.3 0.015 3.3E-07 46.5 3.0 23 163-185 26-48 (182)
475 COG4107 PhnK ABC-type phosphon 95.3 0.015 3.3E-07 46.0 2.8 23 163-185 32-54 (258)
476 cd03216 ABC_Carb_Monos_I This 95.3 0.016 3.5E-07 45.5 3.1 23 163-185 26-48 (163)
477 PRK07429 phosphoribulokinase; 95.3 0.017 3.8E-07 50.7 3.5 25 161-185 6-30 (327)
478 PRK13232 nifH nitrogenase redu 95.3 0.014 3E-07 49.9 2.8 21 164-184 2-22 (273)
479 cd03228 ABCC_MRP_Like The MRP 95.3 0.016 3.6E-07 45.8 3.1 23 163-185 28-50 (171)
480 PRK10895 lipopolysaccharide AB 95.3 0.015 3.2E-07 48.7 3.0 23 163-185 29-51 (241)
481 PRK14267 phosphate ABC transpo 95.3 0.015 3.3E-07 49.0 3.0 23 163-185 30-52 (253)
482 cd03294 ABC_Pro_Gly_Bertaine T 95.3 0.015 3.3E-07 49.6 3.1 24 162-185 49-72 (269)
483 TIGR01351 adk adenylate kinase 95.3 0.014 3E-07 47.9 2.7 20 166-185 2-21 (210)
484 PRK11831 putative ABC transpor 95.3 0.015 3.3E-07 49.6 3.0 23 163-185 33-55 (269)
485 cd01878 HflX HflX subfamily. 95.3 0.017 3.6E-07 46.9 3.1 27 161-187 39-65 (204)
486 cd02117 NifH_like This family 95.3 0.014 3E-07 47.9 2.7 21 164-184 1-21 (212)
487 PRK14239 phosphate transporter 95.3 0.015 3.4E-07 48.9 3.0 23 163-185 31-53 (252)
488 cd04124 RabL2 RabL2 subfamily. 95.3 0.017 3.6E-07 45.0 3.1 21 166-186 3-23 (161)
489 PRK14256 phosphate ABC transpo 95.3 0.016 3.4E-07 48.9 3.1 23 163-185 30-52 (252)
490 PRK10744 pstB phosphate transp 95.2 0.016 3.4E-07 49.2 3.1 23 163-185 39-61 (260)
491 PRK13638 cbiO cobalt transport 95.2 0.015 3.2E-07 49.7 2.9 23 163-185 27-49 (271)
492 TIGR00101 ureG urease accessor 95.2 0.017 3.8E-07 47.0 3.2 22 164-185 2-23 (199)
493 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.016 3.6E-07 48.3 3.1 24 163-186 29-52 (238)
494 PRK07764 DNA polymerase III su 95.2 0.11 2.5E-06 51.1 9.3 40 145-185 20-59 (824)
495 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.015 3.2E-07 40.6 2.4 21 165-185 1-21 (99)
496 PRK13649 cbiO cobalt transport 95.2 0.015 3.3E-07 49.8 3.0 23 163-185 33-55 (280)
497 cd02040 NifH NifH gene encodes 95.2 0.015 3.2E-07 49.4 2.9 22 164-185 2-23 (270)
498 cd03245 ABCC_bacteriocin_expor 95.2 0.016 3.6E-07 47.6 3.1 24 162-185 29-52 (220)
499 cd03251 ABCC_MsbA MsbA is an e 95.2 0.016 3.5E-07 48.1 3.1 23 163-185 28-50 (234)
500 TIGR01188 drrA daunorubicin re 95.2 0.016 3.4E-07 50.4 3.1 23 163-185 19-41 (302)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=2e-28 Score=235.98 Aligned_cols=230 Identities=20% Similarity=0.215 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHhhchhhhh--cchhh-hcCCccHHHHHHHHHHHHhhhHhHHHHHHHHHHhccCCC-----------
Q 046049 23 HLIQLFREHFDKAKISLPFWQL--LDSEE-NVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSE----------- 88 (261)
Q Consensus 23 ~~~~~~~~~~~~L~~~l~~i~~--~d~~~-~~~~~~~~~Wl~~lr~~a~d~eD~id~~~~~~~~~~~~~----------- 88 (261)
+...+..+.+.+|++.+..++. -|+.. +.....+.+|.+.+++++|++||+++.|.......+..+
T Consensus 21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 21 ECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 3445556678888988888882 33333 356778999999999999999999999988877653221
Q ss_pred ccccccccccHHHHHHHHHHHHhccCCCCCCccccc-----CcccccccccCCCCCCCch-h-hhHhHHHHHHHHhcCCC
Q 046049 89 STTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINE-----RRDKLIHLLIEGQPRVDES-E-FERGREELFDLLIEGPP 161 (261)
Q Consensus 89 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~L~~~~~ 161 (261)
-|++.+++ +.+..+..+..++..+.+....++... .........++..+...+. . .+..++++.+.|..++.
T Consensus 101 ~c~~~~~~-~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~ 179 (889)
T KOG4658|consen 101 LCLCGFCS-KNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDV 179 (889)
T ss_pred HhhhhhHh-HhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCC
Confidence 12223444 555555555555544444444443322 0001122233344444332 3 99999999999998764
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCC-cccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNH-VKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK 239 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~ 239 (261)
.++||+||||+||||||+.+||+.. ++.+|+..+|| +||++|+..+|+++|+..++..... ... +.++++
T Consensus 180 --~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV---~VSk~f~~~~iq~~Il~~l~~~~~~---~~~~~~~~~~ 251 (889)
T KOG4658|consen 180 --GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV---VVSKEFTTRKIQQTILERLGLLDEE---WEDKEEDELA 251 (889)
T ss_pred --CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE---EEcccccHHhHHHHHHHHhccCCcc---cchhhHHHHH
Confidence 9999999999999999999999987 99999999999 9999999999999999999875441 122 457999
Q ss_pred HHHHHhccCCeEEEEeecCCCC
Q 046049 240 SILRDYLTDKKYFIVLDDVFDD 261 (261)
Q Consensus 240 ~~l~~~L~~kr~LlVlDDVW~~ 261 (261)
..|.++|++|||||||||||++
T Consensus 252 ~~i~~~L~~krfllvLDDIW~~ 273 (889)
T KOG4658|consen 252 SKLLNLLEGKRFLLVLDDIWEE 273 (889)
T ss_pred HHHHHHhccCceEEEEeccccc
Confidence 9999999999999999999985
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.84 E-value=1e-20 Score=162.79 Aligned_cols=112 Identities=30% Similarity=0.437 Sum_probs=96.4
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPP 224 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~ 224 (261)
|+.++++|.++|.....+.++|+|+||||+||||||+.++++..++.+|+.++|+ .+++.++...++..|+.+++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv---~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWV---SLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEE---EEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccc---cccccccccccccccccccccc
Confidence 6889999999999866789999999999999999999999976688999999999 9999999999999999999987
Q ss_pred CCCccccCCCHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049 225 SRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFD 260 (261)
Q Consensus 225 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW~ 260 (261)
.... ....+.+.+...+.+.|.++++||||||||+
T Consensus 78 ~~~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~ 112 (287)
T PF00931_consen 78 DSSI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWD 112 (287)
T ss_dssp -STS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S
T ss_pred cccc-ccccccccccccchhhhccccceeeeeeecc
Confidence 5411 0022788899999999999999999999997
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.5e-14 Score=145.65 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=77.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-----------CC-HHH
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-----------YD-FGK 212 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-----------~~-~~~ 212 (261)
++..+++|..+|..+..+.++|+||||||+||||||+.+|+ .+..+|+..+|+....++.. ++ ...
T Consensus 189 ~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~ 266 (1153)
T PLN03210 189 IEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLH 266 (1153)
T ss_pred hHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHH
Confidence 88889999998876666799999999999999999999999 77889998888732212211 11 123
Q ss_pred HHHHHHHHhCCCCCCccccCC-CHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049 213 ILDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTDKKYFIVLDDVFD 260 (261)
Q Consensus 213 il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDDVW~ 260 (261)
++..++.++..... ... .. ..+++.|++||+||||||||+
T Consensus 267 l~~~~l~~il~~~~----~~~~~~----~~~~~~L~~krvLLVLDdv~~ 307 (1153)
T PLN03210 267 LQRAFLSEILDKKD----IKIYHL----GAMEERLKHRKVLIFIDDLDD 307 (1153)
T ss_pred HHHHHHHHHhCCCC----cccCCH----HHHHHHHhCCeEEEEEeCCCC
Confidence 55566666544322 011 21 457888999999999999996
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.90 E-value=3.4e-09 Score=89.21 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=61.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC--CCHHHHHHHHHHHhCCCCCCccccCC--CHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA--YDFGKILDDIIKSVMPPSRVSVIIGE--DYQLK 238 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~--~~~~~il~~i~~~l~~~~~~~~~~~~--~~~~l 238 (261)
-..++|+|++|+|||||++.+|++.... +|++.+|+ ++++. ++..++++.|...+-....+...... -....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v---~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIV---LLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEE---EEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4688999999999999999999975544 89999999 87776 89999999983333222221000000 11112
Q ss_pred HHHHHHh-ccCCeEEEEeecC
Q 046049 239 KSILRDY-LTDKKYFIVLDDV 258 (261)
Q Consensus 239 ~~~l~~~-L~~kr~LlVlDDV 258 (261)
......+ -.+++.++++|++
T Consensus 92 ~~~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECH
Confidence 2222222 2489999999986
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=5.7e-08 Score=82.75 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=57.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSIL 242 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l 242 (261)
.+++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..|+..++.... +.+...+...+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~----~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l 111 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL----VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLREL 111 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee----eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHH
Confidence 468899999999999999999985331 111 12233 23345778899999998876543 11222333333
Q ss_pred H----Hh-ccCCeEEEEeecCCC
Q 046049 243 R----DY-LTDKKYFIVLDDVFD 260 (261)
Q Consensus 243 ~----~~-L~~kr~LlVlDDVW~ 260 (261)
. .. ..+++++||+||+|.
T Consensus 112 ~~~l~~~~~~~~~~vliiDe~~~ 134 (269)
T TIGR03015 112 EDFLIEQFAAGKRALLVVDEAQN 134 (269)
T ss_pred HHHHHHHHhCCCCeEEEEECccc
Confidence 3 32 267889999999985
No 6
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.80 E-value=9.7e-09 Score=77.68 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=63.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccc-----cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFY-----FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQ 236 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~ 236 (261)
-+.+.|+|.+|+|||++++.+.++ .... -...+|+ ..+...+...+...|+.+++.... .. +..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYV---NCPSSRTPRDFAQEILEALGLPLK-----SRQTSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEE---EHHHHSSHHHHHHHHHHHHT-SSS-----STS-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEE---EeCCCCCHHHHHHHHHHHhCcccc-----ccCCHH
Confidence 578999999999999999999873 2221 2345688 887777999999999999998776 33 677
Q ss_pred HHHHHHHHhccCC-eEEEEeecC
Q 046049 237 LKKSILRDYLTDK-KYFIVLDDV 258 (261)
Q Consensus 237 ~l~~~l~~~L~~k-r~LlVlDDV 258 (261)
++...+.+.+... ..+||+|++
T Consensus 74 ~l~~~~~~~l~~~~~~~lviDe~ 96 (131)
T PF13401_consen 74 ELRSLLIDALDRRRVVLLVIDEA 96 (131)
T ss_dssp HHHHHHHHHHHHCTEEEEEEETT
T ss_pred HHHHHHHHHHHhcCCeEEEEeCh
Confidence 7888888888654 459999985
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.80 E-value=4.4e-08 Score=88.15 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=77.2
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
|+++.++|...|... ......+.|+|++|+|||++++.++++.......-..+++ ......+...++..|+.++.
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i---n~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI---NCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE---ECCcCCCHHHHHHHHHHHhc
Confidence 899999999888432 2234456799999999999999999843212112234555 55666678899999999997
Q ss_pred CCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCCC
Q 046049 223 PPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVFD 260 (261)
Q Consensus 223 ~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW~ 260 (261)
..... ... +.+++...+.+.+. ++..+||||+++.
T Consensus 112 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 112 GHPPP---SSGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred CCCCC---CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 63221 022 66777778888775 4568999999863
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.80 E-value=5.4e-09 Score=92.21 Aligned_cols=91 Identities=11% Similarity=-0.034 Sum_probs=60.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC--CHHHHHHHHHHHhCCCCCCccccCC--CHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY--DFGKILDDIIKSVMPPSRVSVIIGE--DYQLK 238 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~--~~~~il~~i~~~l~~~~~~~~~~~~--~~~~l 238 (261)
-.-.+|+|++|+|||||++.||++.... ||++++|| .+++.+ ...++++.|...+-....+. .... -....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~V---vLIgER~~EVtdiqrsIlg~vv~st~d~-~~~~~~~~a~~ 243 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIV---LLIDERPEEVTDMQRSVKGEVVASTFDE-PAERHVQVAEM 243 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEE---EEeCCchhHHHHHHHHhcCcEEEECCCC-CHHHHHHHHHH
Confidence 4577899999999999999999965444 89999999 999887 77888888863222222110 0000 00011
Q ss_pred HHHHHHh--ccCCeEEEEeecC
Q 046049 239 KSILRDY--LTDKKYFIVLDDV 258 (261)
Q Consensus 239 ~~~l~~~--L~~kr~LlVlDDV 258 (261)
.-...++ -.|++.||++|++
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEECh
Confidence 1112222 2679999999986
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.74 E-value=1.1e-07 Score=84.74 Aligned_cols=106 Identities=19% Similarity=0.096 Sum_probs=74.2
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc------ceeeEEecccccCCCCHHHHHHH
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF------DCHAWVKNLSVSIAYDFGKILDD 216 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~vs~~~~~~~il~~ 216 (261)
|+.++++|...|... ......+.|+|++|+|||++++.+++. ..... -..+|+ ......+...++..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~i---n~~~~~~~~~~~~~ 94 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYV---NCQILDTLYQVLVE 94 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEE---ECCCCCCHHHHHHH
Confidence 999999999998641 233457899999999999999999873 22111 133566 66666677889999
Q ss_pred HHHHhCC---CCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049 217 IIKSVMP---PSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF 259 (261)
Q Consensus 217 i~~~l~~---~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW 259 (261)
|+.++.. ... ... +..++...+.+.+. +++++||||++.
T Consensus 95 i~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d 139 (365)
T TIGR02928 95 LANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEID 139 (365)
T ss_pred HHHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchh
Confidence 9999842 211 012 45556666666663 568999999985
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.60 E-value=1.1e-07 Score=84.45 Aligned_cols=91 Identities=9% Similarity=-0.057 Sum_probs=61.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC--CCHHHHHHHHHHHhCCCCCCccccCCCHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA--YDFGKILDDIIKSVMPPSRVSVIIGEDYQLKK 239 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~--~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~ 239 (261)
.-..++|+|++|+|||||++.+++.... +||+..+|| .+++. .++.++++.|+..+-....+.. ......+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~V---lLIgER~~EVtDLqrsIlg~Vvast~d~p--~~~~~~va 240 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIV---LLIDERPEEVTDMQRSVKGEVVASTFDEP--ASRHVQVA 240 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEE---EEcCCCCccHHHHHHHhhceEEEecCCCC--hHHHHHHH
Confidence 3467999999999999999999995433 379999999 88865 7899999998654443332100 00111111
Q ss_pred H----HHHHh-ccCCeEEEEeecC
Q 046049 240 S----ILRDY-LTDKKYFIVLDDV 258 (261)
Q Consensus 240 ~----~l~~~-L~~kr~LlVlDDV 258 (261)
. ....+ -.|++.+|++|.+
T Consensus 241 ~~v~e~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 241 EMVIEKAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECh
Confidence 1 11111 2589999999986
No 11
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.33 E-value=1.4e-06 Score=69.60 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=29.1
Q ss_pred hhHhHHHHHHHHh-cCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLI-EGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~-~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
|+++.+.+...|. ......+.+.|+|++|+|||+|.+.++..
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999884 22345799999999999999999998883
No 12
>PTZ00202 tuzin; Provisional
Probab=98.29 E-value=2.1e-05 Score=70.57 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=65.1
Q ss_pred hhHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049 145 FERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP 223 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~ 223 (261)
|+.+...|...|.+.+ ....++.|.|++|+|||||++.+.... . | .+++ . ...+..+++..|+.+++.
T Consensus 267 ReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~--~--~qL~---v--Nprg~eElLr~LL~ALGV 335 (550)
T PTZ00202 267 REAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M--PAVF---V--DVRGTEDTLRSVVKALGV 335 (550)
T ss_pred cHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C--c--eEEE---E--CCCCHHHHHHHHHHHcCC
Confidence 9999999998886533 334699999999999999999998732 2 1 1333 2 222679999999999997
Q ss_pred CCCCccccCCCHHHHHHHHHHhc-----c-CCeEEEEe
Q 046049 224 PSRVSVIIGEDYQLKKSILRDYL-----T-DKKYFIVL 255 (261)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVl 255 (261)
+.. ....++...|.+.| . +++-+||+
T Consensus 336 ~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 336 PNV------EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred CCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 13344555555544 2 67777776
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=6.1e-06 Score=62.62 Aligned_cols=40 Identities=20% Similarity=0.066 Sum_probs=30.9
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
++.....+...+... ....+.|+|++|+||||+++.+++.
T Consensus 3 ~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred hHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445666777766543 3567889999999999999999984
No 14
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=8.5e-06 Score=72.48 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=76.5
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccce--eeEEecccccCCCCHHHHHHHHHHH
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC--HAWVKNLSVSIAYDFGKILDDIIKS 220 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~vs~~~~~~~il~~i~~~ 220 (261)
|+++.+.+...|..- .....-+-|+|.+|+|||+.++.|.+ +++..... .+.| ..-...++..++..|+.+
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yI---Nc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYI---NCLELRTPYQVLSKILNK 96 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEE---eeeeCCCHHHHHHHHHHH
Confidence 889999988877532 11122388999999999999999988 44443221 5666 666778899999999999
Q ss_pred hCCCCCCccccCCCHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049 221 VMPPSRVSVIIGEDYQLKKSILRDYLT--DKKYFIVLDDV 258 (261)
Q Consensus 221 l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDDV 258 (261)
++.... .+....+....+.+.+. ++.++||||++
T Consensus 97 ~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEi 132 (366)
T COG1474 97 LGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEV 132 (366)
T ss_pred cCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcch
Confidence 973332 12266667777777774 58899999986
No 15
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=3.4e-06 Score=65.98 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=46.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccc----cceeeEEecccccCCCCHH---HHHHHHHHHhCCCCCCccccCCCHH
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFY----FDCHAWVKNLSVSIAYDFG---KILDDIIKSVMPPSRVSVIIGEDYQ 236 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~vs~~~~~~---~il~~i~~~l~~~~~~~~~~~~~~~ 236 (261)
+++.|+|.+|+||||+++.+...-.-... |...+|+ +.+...... .+...|..+...... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~ 70 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF---SLRDISDSNNSRSLADLLFDQLPESIA-------PIE 70 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE---eehhhhhccccchHHHHHHHhhccchh-------hhH
Confidence 47899999999999999998763222221 4556666 554332222 333344334332211 112
Q ss_pred HHHHHHHHhc-cCCeEEEEeecC
Q 046049 237 LKKSILRDYL-TDKKYFIVLDDV 258 (261)
Q Consensus 237 ~l~~~l~~~L-~~kr~LlVlDDV 258 (261)
. .+...+ ..++++||||++
T Consensus 71 ~---~~~~~~~~~~~~llilDgl 90 (166)
T PF05729_consen 71 E---LLQELLEKNKRVLLILDGL 90 (166)
T ss_pred H---HHHHHHHcCCceEEEEech
Confidence 1 222222 578999999985
No 16
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.10 E-value=6.2e-06 Score=74.47 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=50.4
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHH
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILD 215 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~ 215 (261)
.+...+.++..|... +.|.++|++|+|||++|+.+.+......+|+...|| ++++.++..+++.
T Consensus 180 ~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V---tFHpsySYeDFI~ 243 (459)
T PRK11331 180 PETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV---QFHQSYSYEDFIQ 243 (459)
T ss_pred CHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE---eecccccHHHHhc
Confidence 566777788877643 467789999999999999998854444578888899 9999988776654
No 17
>PRK08118 topology modulation protein; Reviewed
Probab=98.08 E-value=2e-06 Score=68.25 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=27.6
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcc-cccceeeE
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVK-FYFDCHAW 198 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 198 (261)
-|.|+|++|+||||||+.+++...+. -+|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999865444 45777773
No 18
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.05 E-value=1.7e-05 Score=65.54 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=33.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
|+.+.+.|.+++..+. ...+.|+|+.|+|||+|++.+.+.
T Consensus 4 R~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 4 REKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp -HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 7889999999887643 578899999999999999999883
No 19
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.03 E-value=9.5e-06 Score=67.65 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
.--++|+|..|+|||||...+.. .....|.+..++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~ 47 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLI 47 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEE
Confidence 34678999999999999998887 466788777666
No 20
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.99 E-value=3.5e-05 Score=57.81 Aligned_cols=86 Identities=12% Similarity=-0.030 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILR 243 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 243 (261)
..+.|+|++|+||||+++.+... ........+.+ ..+........... ......... ..........+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~ 71 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYI---DGEDILEEVLDQLL-LIIVGGKKA-----SGSGELRLRLAL 71 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEE---CCEEccccCHHHHH-hhhhhccCC-----CCCHHHHHHHHH
Confidence 57899999999999999999883 33222234444 44333222111111 001111110 113333344555
Q ss_pred HhccCCe-EEEEeecCCC
Q 046049 244 DYLTDKK-YFIVLDDVFD 260 (261)
Q Consensus 244 ~~L~~kr-~LlVlDDVW~ 260 (261)
...+..+ .+|++|++..
T Consensus 72 ~~~~~~~~~viiiDei~~ 89 (148)
T smart00382 72 ALARKLKPDVLILDEITS 89 (148)
T ss_pred HHHHhcCCCEEEEECCcc
Confidence 5555444 8999999864
No 21
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.98 E-value=7.3e-05 Score=72.25 Aligned_cols=107 Identities=10% Similarity=-0.001 Sum_probs=69.2
Q ss_pred hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHcCCCc---ccccc--eeeEEecccccCCCCHHHHHHH
Q 046049 145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFNNNHV---KFYFD--CHAWVKNLSVSIAYDFGKILDD 216 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~vs~~~~~~~il~~ 216 (261)
|++++++|...|... .....++-|+|++|+|||+.++.|.+.-.- ..... ..++| ....-.++..++..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI---NCm~Lstp~sIYqv 836 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI---NGMNVVHPNAAYQV 836 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE---eCCccCCHHHHHHH
Confidence 999999998888542 233467889999999999999999763110 11122 13455 44455677888899
Q ss_pred HHHHhCCCCCCccccCC-CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 217 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 217 i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
|+.++...... .. ...+....+...+. ....+||||+|
T Consensus 837 I~qqL~g~~P~----~GlsS~evLerLF~~L~k~~r~v~IIILDEI 878 (1164)
T PTZ00112 837 LYKQLFNKKPP----NALNSFKILDRLFNQNKKDNRNVSILIIDEI 878 (1164)
T ss_pred HHHHHcCCCCC----ccccHHHHHHHHHhhhhcccccceEEEeehH
Confidence 99888544321 22 34445555555552 22358999986
No 22
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.96 E-value=7.4e-05 Score=65.45 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=72.9
Q ss_pred hhHhHHHHHHHHhcCCCC-eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049 145 FERGREELFDLLIEGPPR-LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP 223 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~-~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~ 223 (261)
|+.+...+..++...+.. ..++-|.|-.|.|||.+.+.+++... -..+|+ ++-..|+...++..|+.+...
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~---n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWL---NCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----Ccceee---ehHHhccHHHHHHHHHHHhcc
Confidence 888888888888665542 44558899999999999999999542 245899 999999999999999999963
Q ss_pred CCCCccccCCCHHHHHHHHHHhc-------cCCeEEEEeecC
Q 046049 224 PSRVSVIIGEDYQLKKSILRDYL-------TDKKYFIVLDDV 258 (261)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~l~~~L-------~~kr~LlVlDDV 258 (261)
...+......+.+.+.+.+..+- +++.++||||++
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence 33311000101122222222221 256899999975
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.94 E-value=7.1e-05 Score=74.35 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCC
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRV 227 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~ 227 (261)
+..|.+.|... ...+++.|.|++|.||||++...... ++..+|+ ++. .+-++..++..++..+......
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~---~l~~~d~~~~~f~~~l~~~l~~~~~~ 88 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWY---SLDESDNQPERFASYLIAALQQATNG 88 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEE---ecCcccCCHHHHHHHHHHHHHHhcCc
Confidence 34566666433 45789999999999999999987752 3368999 996 4456667777777777422211
Q ss_pred ----c----cccCC-CHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049 228 ----S----VIIGE-DYQLKKSILRDYLT--DKKYFIVLDDV 258 (261)
Q Consensus 228 ----~----~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDV 258 (261)
. ...+. +...+...+...|. +.+++|||||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~ 130 (903)
T PRK04841 89 HCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDY 130 (903)
T ss_pred ccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 0 00111 23333333333332 67899999997
No 24
>PF13173 AAA_14: AAA domain
Probab=97.80 E-value=3.6e-05 Score=58.15 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=26.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
-+++.|.|+.|+|||||++.++.+.. .....+++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi 35 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYI 35 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceee
Confidence 46899999999999999999887432 33455666
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.73 E-value=8.1e-05 Score=67.57 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
|..++... ....+.++|++|+||||||+.+.+.
T Consensus 27 L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 27 LRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 55555443 3557788999999999999999883
No 26
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.72 E-value=0.0001 Score=65.19 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=64.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc-ccce-eeEEecccccC-CCCHHHHHHHHHHHhCCC
Q 046049 148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF-YFDC-HAWVKNLSVSI-AYDFGKILDDIIKSVMPP 224 (261)
Q Consensus 148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~vs~-~~~~~~il~~i~~~l~~~ 224 (261)
-..++++.+..-.. -.-+.|+|.+|+|||||++.+.+. +.. +=+. ++|+ .+.. ...+.++++.+...+...
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~---lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVL---LIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEE---EecCCCCCHHHHHHHHhhhEEee
Confidence 34456776654332 345699999999999999988772 222 2233 4676 6654 467788889888877665
Q ss_pred CCCccccCC-CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 225 SRVSVIIGE-DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 225 ~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
..+...... ........+.+++ .+++.+||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 431100000 1111222333344 589999999986
No 27
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.71 E-value=0.0001 Score=61.01 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=34.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
-+..++.+..++.. .....+.|+|++|+|||+||+.+++. ........+++
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i 72 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYL 72 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEE
Confidence 34445566666543 33578889999999999999999873 22233344556
No 28
>PRK06893 DNA replication initiation factor; Validated
Probab=97.69 E-value=4.5e-05 Score=63.62 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=26.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
.+.+.++|++|+|||+|++.+.+. .........++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~ 73 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYI 73 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEe
Confidence 356899999999999999999983 33333345677
No 29
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.67 E-value=0.0001 Score=64.41 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=46.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKS 240 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~ 240 (261)
+.+.-+-.||++|+||||||+.+.+..+-.. ..+| +.|-.-.-..=.++|+++....
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfv---elSAt~a~t~dvR~ife~aq~~---------------- 216 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFV---ELSATNAKTNDVRDIFEQAQNE---------------- 216 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEE---EEeccccchHHHHHHHHHHHHH----------------
Confidence 3577778999999999999999998544333 4456 6665544333445555443221
Q ss_pred HHHHhccCCeEEEEeecC
Q 046049 241 ILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~~kr~LlVlDDV 258 (261)
..|.++|-.|++|.|
T Consensus 217 ---~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 217 ---KSLTKRKTILFIDEI 231 (554)
T ss_pred ---HhhhcceeEEEeHHh
Confidence 123467777778766
No 30
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.67 E-value=4.7e-05 Score=57.14 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.2
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|-|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 31
>PHA00729 NTP-binding motif containing protein
Probab=97.65 E-value=0.0002 Score=59.12 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=24.6
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+++-+... +..-|.|.|.+|+||||||..+.+
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 44444333 356788999999999999999987
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.63 E-value=0.00012 Score=60.12 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=28.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+...-+++........+..+-.||++|+||||||..+.+.
T Consensus 32 l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 32 LKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp HHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc
Confidence 333344444444444456888999999999999999999994
No 33
>PRK08116 hypothetical protein; Validated
Probab=97.63 E-value=0.00015 Score=62.02 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=33.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
.-+.++|.+|+|||.||..+++ .+..+-...+++ +..+++..|.....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~---------~~~~ll~~i~~~~~ 162 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFV---------NFPQLLNRIKSTYK 162 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEE---------EHHHHHHHHHHHHh
Confidence 3578999999999999999999 443333345666 34556666655443
No 34
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.62 E-value=0.00027 Score=58.60 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=54.0
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH-hCCCCCCccccC
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS-VMPPSRVSVIIG 232 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~-l~~~~~~~~~~~ 232 (261)
++|.++=..-.++.|+|++|+|||+||..+... ....-...+|+ +.. .++...+. ++... +........-..
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi---~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~ 86 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYI---DTE-GLSPERFK-QIAGEDFEELLSNIIIFE 86 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEE---ECC-CCCHHHHH-HHHhhChHhHhhCeEEEe
Confidence 344333355789999999999999999888763 22233567888 766 56555443 23322 000000000001
Q ss_pred C-CHH---HHHHHHHHhccCCeEEEEeecC
Q 046049 233 E-DYQ---LKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 233 ~-~~~---~l~~~l~~~L~~kr~LlVlDDV 258 (261)
. +.. +....+...+..+--++|+|.+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 87 PSSFEEQSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence 1 332 3334444445456678999975
No 35
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.62 E-value=0.00037 Score=58.62 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+..+.++...-..+...+-++|.+|+|||+||..+.+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344444444332233457889999999999999999883
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00012 Score=64.70 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCccccc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYF 193 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F 193 (261)
.+.-.-.||++|+||||||+.+.. .....|
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f 76 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF 76 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence 466666899999999999999988 444444
No 37
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.61 E-value=5e-05 Score=56.42 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 38
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.59 E-value=0.00032 Score=57.46 Aligned_cols=96 Identities=9% Similarity=-0.006 Sum_probs=55.1
Q ss_pred HhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCC-CC---cccc
Q 046049 156 LIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPS-RV---SVII 231 (261)
Q Consensus 156 L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~-~~---~~~~ 231 (261)
|.++=+.-.++-|+|++|+|||+|+..+... ........+|+ +... ++...+.+. .+...... .. ....
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi---~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~ 77 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYI---DTEG-LSPERFKQI-AEDRPERALSNFIVFEVF 77 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEE---ECCC-CCHHHHHHH-HHhChHHHhcCEEEEECC
Confidence 3333356789999999999999999887652 22334677899 7765 666665543 22220000 00 0001
Q ss_pred CC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049 232 GE-DYQLKKSILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 232 ~~-~~~~l~~~l~~~L~~-kr~LlVlDDV 258 (261)
+. +.......+.+.+.. +--+||+|-+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 78 DFDEQGVAIQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred CHHHHHHHHHHHHHHHhhcCccEEEEeCc
Confidence 11 233345555555543 4558999965
No 39
>PRK12377 putative replication protein; Provisional
Probab=97.54 E-value=0.00025 Score=59.75 Aligned_cols=35 Identities=14% Similarity=-0.103 Sum_probs=27.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
..-+.++|.+|+|||+||..+.+ .+.......+++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEE
Confidence 46788999999999999999998 444444445667
No 40
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.53 E-value=0.0014 Score=56.37 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=70.4
Q ss_pred hhHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcc-----cccceeeEEecccccCCCCHHHHHHHHH
Q 046049 145 FERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFNNNHVK-----FYFDCHAWVKNLSVSIAYDFGKILDDII 218 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~~~~vs~~~~~~~il~~i~ 218 (261)
-.+..+.|.++|.... ....=+.|||.+|.|||++++......-.. ..+ +++.| .....++...+...|+
T Consensus 42 A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~v---q~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 42 AKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYV---QMPPEPDERRFYSAIL 117 (302)
T ss_pred HHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEE---ecCCCCChHHHHHHHH
Confidence 4455566666554332 344568999999999999999887532111 111 34555 7788999999999999
Q ss_pred HHhCCCCCCccccCC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049 219 KSVMPPSRVSVIIGE-DYQLKKSILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 219 ~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDDV 258 (261)
.+++.... .. ....+...+...|+. +--+||+|.+
T Consensus 118 ~~lgaP~~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~ 154 (302)
T PF05621_consen 118 EALGAPYR-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEF 154 (302)
T ss_pred HHhCcccC-----CCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence 99998775 33 555555555556642 3346778876
No 41
>PRK06696 uridine kinase; Validated
Probab=97.52 E-value=0.00016 Score=60.06 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=33.2
Q ss_pred hhHhHHHHHHHHhc-CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE-GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~-~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+..+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45667777777764 235688999999999999999998876
No 42
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.52 E-value=0.00055 Score=57.03 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=56.6
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc------
Q 046049 159 GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS------ 228 (261)
Q Consensus 159 ~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~------ 228 (261)
+-..-.++.|+|.+|+|||+|+..+.-...... .....+|+ +....++...+. +++++.+......
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi---~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~ 90 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI---DTEGTFRPERLV-QIAERFGLDPEEVLDNIYV 90 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEE---eCCCCcCHHHHH-HHHHHhccChHhHhcCEEE
Confidence 335568999999999999999998864212222 13578899 877777765543 3444443322110
Q ss_pred -cccCC-CHHHHHHHHHHhcc-C-CeEEEEeecC
Q 046049 229 -VIIGE-DYQLKKSILRDYLT-D-KKYFIVLDDV 258 (261)
Q Consensus 229 -~~~~~-~~~~l~~~l~~~L~-~-kr~LlVlDDV 258 (261)
...+. +...+...+...+. . +--|||+|-+
T Consensus 91 ~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 91 ARAYNSDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred EecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 00111 23333344555553 3 6689999976
No 43
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.52 E-value=0.00014 Score=57.92 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=27.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
...+|.+.|+.|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 444445444555
No 44
>PRK07261 topology modulation protein; Provisional
Probab=97.52 E-value=0.00023 Score=56.62 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=24.6
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcc-cccceeeEE
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVK-FYFDCHAWV 199 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 199 (261)
.|.|+|++|+||||||+.+.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 48999999999999999887532221 234555554
No 45
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.46 E-value=0.0011 Score=54.94 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=57.9
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC-cc
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV-SV 229 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~-~~ 229 (261)
+|.++-+.-.++.|+|++|+|||+|+..+........ .=...+|+ +....++...+. .+.......... ..
T Consensus 11 ~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi---~~e~~~~~~rl~-~~~~~~~~~~~~~~~ 86 (226)
T cd01393 11 LLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI---DTEGAFRPERLV-QLAVRFGLDPEEVLD 86 (226)
T ss_pred HhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEE---ecCCCCCHHHHH-HHHHHhccchhhhhc
Confidence 3333335578999999999999999998755211111 01455888 777777765543 333433322110 00
Q ss_pred c---cCC-CHHHHHHHHHHhcc----CCeEEEEeecCC
Q 046049 230 I---IGE-DYQLKKSILRDYLT----DKKYFIVLDDVF 259 (261)
Q Consensus 230 ~---~~~-~~~~l~~~l~~~L~----~kr~LlVlDDVW 259 (261)
. ... +.+++...+...+. .+--|||+|.+-
T Consensus 87 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 87 NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 0 011 55666666665543 344589999863
No 46
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.42 E-value=0.00032 Score=59.75 Aligned_cols=92 Identities=11% Similarity=0.228 Sum_probs=55.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCC--ccccCC----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRV--SVIIGE---- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~---- 233 (261)
+-.-++|+|..|+|||||++.+++ .++.+|. .++++ .+.... ...++..++.+.-...... ....+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~---~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 142 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFA---GVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGA 142 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEE---EeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHH
Confidence 346789999999999999999999 4554554 44555 666543 3456666665432111110 000011
Q ss_pred --CHHHHHHHHHHhc--c-CCeEEEEeecC
Q 046049 234 --DYQLKKSILRDYL--T-DKKYFIVLDDV 258 (261)
Q Consensus 234 --~~~~l~~~l~~~L--~-~kr~LlVlDDV 258 (261)
-.....-.+.+++ + ++.+|+++||+
T Consensus 143 r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 143 RARVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112233456666 3 89999999997
No 47
>PRK07667 uridine kinase; Provisional
Probab=97.40 E-value=0.00025 Score=57.55 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.|.+.+........+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567777766566678999999999999999998876
No 48
>PRK08181 transposase; Validated
Probab=97.36 E-value=0.0006 Score=58.17 Aligned_cols=34 Identities=9% Similarity=-0.194 Sum_probs=25.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
.-+.++|++|+|||.||..+.+ ..........++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeee
Confidence 3488999999999999999987 333333344566
No 49
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.35 E-value=0.0017 Score=56.82 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=59.1
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc----ceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-c
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF----DCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-V 229 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~ 229 (261)
+|.++=+.-.++-|+|++|+|||+|+..+.-.......+ ...+|| +...+|++..+.+ +++.++...... .
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi---~te~~f~~~rl~~-~~~~~g~~~~~~l~ 169 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI---DTEGTFRPERIEQ-MAEALGLDPDEVLD 169 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEE---eCCCCcCHHHHHH-HHHHcCCChHhhhc
Confidence 343333557899999999999999998876432221111 367899 8888888877654 445554332110 0
Q ss_pred c------cCC-CHHHHHHHHHHhccC--CeEEEEeecC
Q 046049 230 I------IGE-DYQLKKSILRDYLTD--KKYFIVLDDV 258 (261)
Q Consensus 230 ~------~~~-~~~~l~~~l~~~L~~--kr~LlVlDDV 258 (261)
. ... ....+...+...+.. +--|||+|-+
T Consensus 170 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 170 NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 0 011 223344555555643 3348999975
No 50
>PRK08727 hypothetical protein; Validated
Probab=97.34 E-value=0.00025 Score=59.26 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=26.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
..+.|+|+.|+|||+|++.+.+ ....+....+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 4599999999999999999987 334433455666
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=97.33 E-value=0.0014 Score=60.72 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=32.6
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+..++.|.+|+..- ....+.+-|+|++|+||||+|+.+.+.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 566677777777532 122678999999999999999999884
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.30 E-value=0.0013 Score=57.09 Aligned_cols=106 Identities=16% Similarity=0.062 Sum_probs=56.1
Q ss_pred hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHh
Q 046049 145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSV 221 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l 221 (261)
++..++.|..++... ......+.++|++|+|||+||+.+.+. ....| ..+ ..+...... .+...+..+
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~---~~~~~~~~~-~l~~~l~~~ 79 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KIT---SGPALEKPG-DLAAILTNL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEe---ccchhcCch-hHHHHHHhc
Confidence 566677777777531 233556789999999999999999883 22222 112 221111222 233334444
Q ss_pred CCCCCC-ccccCCCHHHHHHHHHHhccCCeEEEEeecCC
Q 046049 222 MPPSRV-SVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF 259 (261)
Q Consensus 222 ~~~~~~-~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW 259 (261)
....-- .+++..=.....+.+...+.+.+..+|+++.+
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~ 118 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGP 118 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCc
Confidence 322100 01111101123455677777777778887653
No 53
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.28 E-value=0.00061 Score=65.80 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++..+ ....+-++|++|+||||||+.+.+
T Consensus 42 ~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 42 LLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred HHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 344445433 355678999999999999999998
No 54
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.25 E-value=0.0021 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.2
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 160 PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 160 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+..+++|.|++|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999998876
No 55
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.22 E-value=0.0014 Score=57.31 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK 239 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~ 239 (261)
+.-+++-|+|++|+||||||..+... ....=...+|| ...+.++.. .+++++.......-... +.++..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yI---d~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFI---DAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL 122 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---cccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 56689999999999999999877652 22233466788 776666653 34555543221000011 455555
Q ss_pred HHHHHhcc-CCeEEEEeecC
Q 046049 240 SILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 240 ~~l~~~L~-~kr~LlVlDDV 258 (261)
..+...++ +.--+||+|-|
T Consensus 123 ~~~~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 123 EIAETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHHHHhhccCCcEEEEcch
Confidence 66655554 45678899975
No 56
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0014 Score=62.00 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHhccCCCCCCcccccCc-------ccc-----cccccCCCCCCCchh--hhHhHHHHHHHHhc----C
Q 046049 98 GLHSKIIDIRNRMEQLPPSDNDFDINERR-------DKL-----IHLLIEGQPRVDESE--FERGREELFDLLIE----G 159 (261)
Q Consensus 98 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~----~ 159 (261)
.+.+-+.+-..+++.+......|++..+. +.. ..+........+++. +++.++.|++.+.- +
T Consensus 355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg 434 (906)
T KOG2004|consen 355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG 434 (906)
T ss_pred HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc
Confidence 55566666677888888888888765411 110 111111111222222 99999999998853 3
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 160 PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 160 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+-++++.+|++|+|||.+|+.|..
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 45679999999999999999999987
No 57
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00026 Score=54.99 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-|.|.||+|+|||||++.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 45789999999999999999986
No 58
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.21 E-value=0.0021 Score=56.55 Aligned_cols=105 Identities=17% Similarity=0.063 Sum_probs=55.9
Q ss_pred hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHh
Q 046049 145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSV 221 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l 221 (261)
++..++.+..++.. .......+.++|++|+||||||+.+.+.. ...|. .+ ..+ .......+..++..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~~---~~---~~~-~~~~~~~l~~~l~~l 100 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNIR---IT---SGP-ALEKPGDLAAILTNL 100 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCeE---EE---ecc-cccChHHHHHHHHhc
Confidence 66777776666643 23345678899999999999999998843 22221 12 111 122223344555554
Q ss_pred CCCCCC-ccccCCCHHHHHHHHHHhccCCeEEEEeecC
Q 046049 222 MPPSRV-SVIIGEDYQLKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 222 ~~~~~~-~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDV 258 (261)
....-- .+++..=.....+.+...+.+.+..+++|+.
T Consensus 101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~ 138 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKG 138 (328)
T ss_pred ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccC
Confidence 321100 0111110112334456667777777777764
No 59
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.20 E-value=0.0021 Score=53.02 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD 209 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~ 209 (261)
++|..+=..-.++.|.|.+|+|||||+..+... ....=...+|+ +....+.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi---~~e~~~~ 60 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYI---DTEGLSS 60 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEE---ECCCCCH
Confidence 344333355789999999999999999887652 21222355677 6555543
No 60
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.19 E-value=0.0016 Score=56.02 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|+|+|++|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998887765
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.19 E-value=0.00048 Score=61.51 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=31.9
Q ss_pred hhHhHHHHHHHHhc---CC--------CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIE---GP--------PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~~--------~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
++..+++|.+.+.. .+ ...+-+.++|++|+|||+||+.+.+.
T Consensus 127 l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 127 LEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 78888888776632 10 12455889999999999999999983
No 62
>PTZ00301 uridine kinase; Provisional
Probab=97.19 E-value=0.00036 Score=57.40 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999988765
No 63
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.00062 Score=62.28 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=32.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccc-cc-eeeEEecccccCCCCHHHHHHHHHHHh
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFY-FD-CHAWVKNLSVSIAYDFGKILDDIIKSV 221 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~vs~~~~~~~il~~i~~~l 221 (261)
..-+.|+|++|+|||+|++.+.+ .+... .. ..+|+ + ..+++.++...+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi---~------~~~f~~~~~~~~ 179 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYI---T------SEKFLNDLVDSM 179 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE---E------HHHHHHHHHHHH
Confidence 45699999999999999999998 43332 33 33455 3 345555555544
No 64
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0011 Score=62.66 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=37.7
Q ss_pred hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc
Q 046049 145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF 193 (261)
Q Consensus 145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F 193 (261)
.++.+++|++.|.- ..-+-.+++.|||+|+|||.|++.|.. .....|
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 88999999999843 233458999999999999999999987 444444
No 65
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.18 E-value=0.0013 Score=60.51 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFY 192 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~ 192 (261)
...-+.|+|++|+|||+|++.+.+ .+...
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~ 175 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEK 175 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHh
Confidence 345689999999999999999998 44443
No 66
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.17 E-value=0.00032 Score=56.91 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
||+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 67
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.17 E-value=0.00039 Score=56.98 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+...+|+|+|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999976
No 68
>PRK06526 transposase; Provisional
Probab=97.17 E-value=0.00069 Score=57.37 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-+.++|++|+|||+||..+.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 4578999999999999999876
No 69
>PRK09354 recA recombinase A; Provisional
Probab=97.15 E-value=0.002 Score=56.82 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccC-CCHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIG-EDYQLKK 239 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~-~~~~~l~ 239 (261)
+.-+++-|+|++|+||||||..+... ....=...+|| .....+++. .+++++.....---.. .+.++..
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yI---d~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l 127 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFI---DAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQAL 127 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---CCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 56689999999999999999887652 22333567899 777777753 4555554322100001 1455555
Q ss_pred HHHHHhcc-CCeEEEEeecC
Q 046049 240 SILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 240 ~~l~~~L~-~kr~LlVlDDV 258 (261)
..+...++ ++--|||+|-|
T Consensus 128 ~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 128 EIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHHHHhhcCCCCEEEEeCh
Confidence 56665554 45568999975
No 70
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.15 E-value=0.00037 Score=57.11 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|+|.|.+|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 71
>PRK09183 transposase/IS protein; Provisional
Probab=97.13 E-value=0.0011 Score=56.33 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+.|+|++|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4577999999999999999976
No 72
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.002 Score=56.58 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=32.8
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
+...++....++..=+....-+.++|+.|+|||+||..+.+. +...-..++++
T Consensus 165 ~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~ 217 (329)
T PRK06835 165 MEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYR 217 (329)
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEE
Confidence 444444444455421112366899999999999999999883 32222244556
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.13 E-value=0.0011 Score=55.56 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.|+|+.|+|||+|++.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999887
No 74
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0019 Score=56.41 Aligned_cols=88 Identities=17% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccC-CCHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIG-EDYQLKK 239 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~-~~~~~l~ 239 (261)
+.-+++-|+|++|+||||||..+.-. ....-...+|| .....+++. .+++++.....---.. .+.++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyI---d~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFI---DAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQAL 122 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEE---CccccHHHH-----HHHHcCCCHHHheecCCCCHHHHH
Confidence 55678999999999999999987652 22233567888 777766653 3444443321100001 1455566
Q ss_pred HHHHHhcc-CCeEEEEeecC
Q 046049 240 SILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 240 ~~l~~~L~-~kr~LlVlDDV 258 (261)
..+...++ +.--|||+|-|
T Consensus 123 ~i~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 123 EIADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHHHHhccCCCEEEEcch
Confidence 66655554 45578999975
No 75
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.11 E-value=0.0015 Score=59.18 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...+.|+|+.|+|||+|++.+++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999983
No 76
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.11 E-value=0.0011 Score=60.66 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.|+|+.|+|||+|++.+.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~ 163 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH 163 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 45688999999999999999998
No 77
>PRK08233 hypothetical protein; Provisional
Probab=97.09 E-value=0.00046 Score=54.96 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+|+|.|++|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.09 E-value=0.002 Score=61.48 Aligned_cols=111 Identities=18% Similarity=0.083 Sum_probs=61.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccc---eeeEEecccccCC---CCHHHHHHHH-
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFD---CHAWVKNLSVSIA---YDFGKILDDI- 217 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~vs~~---~~~~~il~~i- 217 (261)
.+..+..+...+.. .....+.|+|++|+||||||+.+++..+...++. ...|+ .+... .+...+...+
T Consensus 159 qs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv---~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 159 QERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV---EVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred CcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE---EEechhccCCHHHHhHHhc
Confidence 44445556665543 2356799999999999999999987543333331 23566 55321 2222222211
Q ss_pred --------------HHHhCCCC----------CC---ccccCCCHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049 218 --------------IKSVMPPS----------RV---SVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFD 260 (261)
Q Consensus 218 --------------~~~l~~~~----------~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW~ 260 (261)
+...+... .+ .+.++.=....+..|...+.+++++++.|+.|.
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence 11111100 00 012233122357788999999999998776553
No 79
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.08 E-value=0.0021 Score=53.26 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+-|+|..|+|||.|.+.+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~ 56 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIAN 56 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999999998
No 80
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.08 E-value=0.0031 Score=55.67 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=59.1
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcc---c-ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-c
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVK---F-YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-V 229 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~ 229 (261)
+|.++=..-.+.=|+|++|+|||+|+..+.-..... . .-...+|| +...+|++..+.+ +++.++...... .
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyI---dTE~tF~peRl~~-ia~~~g~d~~~~l~ 193 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYI---DTEGTFRPDRIVP-IAERFGMDADAVLD 193 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEE---EcCCCCCHHHHHH-HHHHcCCChhhhcC
Confidence 343333556888899999999999998774321221 1 12467899 8889999888755 566666543210 0
Q ss_pred c---cCC-CHHHHHHH---HHHhcc-CCeEEEEeecC
Q 046049 230 I---IGE-DYQLKKSI---LRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 230 ~---~~~-~~~~l~~~---l~~~L~-~kr~LlVlDDV 258 (261)
+ ... +.+++... +...+. .+=-|||+|.+
T Consensus 194 ~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 194 NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0 111 44443333 333332 33457899975
No 81
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.0016 Score=53.36 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++-+|||-|.+|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999988
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.07 E-value=0.0031 Score=55.36 Aligned_cols=39 Identities=15% Similarity=-0.020 Sum_probs=30.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+..++..+ ..+.+-++|++|+||||+|+.+.+
T Consensus 20 ~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 20 QDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred CHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 566677777776543 344577999999999999999876
No 83
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.05 E-value=0.0042 Score=56.50 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.....++|+++|.... .+..++.++|++|+||||.+..+..
T Consensus 74 ~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 74 IKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 4455566666664321 2368999999999999998665543
No 84
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.05 E-value=0.0016 Score=59.69 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.|+|..|+|||+|++.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH
Confidence 45688999999999999999988
No 85
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.04 E-value=0.0034 Score=48.50 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=28.2
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD 209 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~ 209 (261)
++.|+|++|+||||++..+... ....-.+.+++ +....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~---~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYV---DIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEE---ECCcchH
Confidence 4689999999999999988762 23333456777 6555443
No 86
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.04 E-value=0.0024 Score=52.90 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=19.4
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|.+|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 87
>PRK06921 hypothetical protein; Provisional
Probab=97.04 E-value=0.0017 Score=55.44 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=26.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccc-cceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFY-FDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv 199 (261)
..-+.++|..|+|||+||..+.+ .+... -...+++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~ 152 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYF 152 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEE
Confidence 46788999999999999999988 34333 3345666
No 88
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.04 E-value=0.0052 Score=54.28 Aligned_cols=101 Identities=8% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS- 228 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~- 228 (261)
++|.++=..-.++-|.|.+|+|||+|+..+.-...... .-...+|| +...+|+++.+ .+|++.++......
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyI---dtE~~f~~eRl-~qia~~~~~~~~~~l 189 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYI---DTEGTFRPQRL-IQIAERFGLNGADVL 189 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEE---ECCCCccHHHH-HHHHHHcCCChhhhc
Confidence 34444435578899999999999999987764222211 11367899 99999988876 45566665443210
Q ss_pred cc---cCC-CHHHHHHHHH---Hhc-cCCeEEEEeecC
Q 046049 229 VI---IGE-DYQLKKSILR---DYL-TDKKYFIVLDDV 258 (261)
Q Consensus 229 ~~---~~~-~~~~l~~~l~---~~L-~~kr~LlVlDDV 258 (261)
.+ ... +.+++...+. ..+ ..+--|||+|-+
T Consensus 190 ~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 190 ENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred cceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 01 011 4444443333 233 345568999965
No 89
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.03 E-value=0.00051 Score=51.18 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.0
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998773
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.02 E-value=0.0018 Score=63.84 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+++++.+++.|..... .-+.++|++|+|||++|..+..
T Consensus 184 r~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 184 REKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHH
Confidence 99999999999976542 2335999999999999998866
No 91
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.0015 Score=62.18 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=31.0
Q ss_pred hhHhHHHHHHHHhcCC---CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP---PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~---~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-++.++++..+|.... ....++.++|++|+||||+++.+..
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4555666777775432 2346799999999999999999987
No 92
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.006 Score=52.20 Aligned_cols=98 Identities=17% Similarity=0.002 Sum_probs=60.4
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE- 233 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~- 233 (261)
.|-.+-+.-.++=|+|+.|.||||+|.++.-. ....-...+|+ .--+.+++..+..--...+..-.- .+....
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fI---DtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e 125 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFI---DTEHALDPERAKQLGVDLLDNLLV-SQPDTGE 125 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEE---eCCCCCCHHHHHHHHHhhhcceeE-ecCCCHH
Confidence 34344466789999999999999999887663 33333478999 888999987754332221111000 011122
Q ss_pred CHHHHHHHHHHhccCCeEEEEeecC
Q 046049 234 DYQLKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 234 ~~~~l~~~l~~~L~~kr~LlVlDDV 258 (261)
...++...+......+=-|||+|-|
T Consensus 126 ~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 126 QQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecC
Confidence 4445555555555555678888876
No 93
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.99 E-value=0.0085 Score=58.67 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=33.5
Q ss_pred hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|+++|.. +.....++.++|++|+||||+++.+..
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 78888889888753 123456899999999999999999987
No 94
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.98 E-value=0.0047 Score=53.95 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=58.7
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-c
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-V 229 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~ 229 (261)
+|.++=+.-.++-|+|++|+|||+|+..+.-...... .=...+|| +...+|+++.+.+ ++++++...... .
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYI---dtE~~f~~eRi~~-~a~~~g~d~~~~l~ 163 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYI---DTEGTFRPDRIRA-IAERFGVDPDAVLD 163 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEE---EcCCCCCHHHHHH-HHHHcCCChHHhcC
Confidence 4433335568999999999999999987543212211 11367899 8888899888754 566665543210 0
Q ss_pred cc---CC-CHHHHH---HHHHHhcc-CCeEEEEeecC
Q 046049 230 II---GE-DYQLKK---SILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 230 ~~---~~-~~~~l~---~~l~~~L~-~kr~LlVlDDV 258 (261)
++ .. +.+++. ..+...+. ++-=|||+|.+
T Consensus 164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 00 11 333333 33333443 34557999975
No 95
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.98 E-value=0.009 Score=57.64 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCC
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRV 227 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~ 227 (261)
+..|++.|... .+.+.+.|..|.|.|||||+-.... ... .=...+|. ++.. +-++..++..++..++.-.+.
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wl---slde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWL---SLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEe---ecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 45677777654 4689999999999999999987754 111 12357899 8864 567888888888888744331
Q ss_pred c--------cccCC-CHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049 228 S--------VIIGE-DYQLKKSILRDYLT--DKKYFIVLDDV 258 (261)
Q Consensus 228 ~--------~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDV 258 (261)
. +.... +...+...+..-|. .+..++||||-
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDy 138 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDY 138 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 0 00011 34444444444332 45789999993
No 96
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.0045 Score=53.88 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=28.9
Q ss_pred hhHhHHHHHHHHhcCC--CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGP--PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~--~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+........+++..-. ....-+-++|..|+|||.||..+.+.
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3334444555554321 13456889999999999999999984
No 97
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.98 E-value=0.0025 Score=62.04 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=31.9
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+.+++.+++.|.... ..-+.++|++|+|||++|+.+.+
T Consensus 187 r~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 187 REDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred cHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 9999999999886653 22345899999999999998876
No 98
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00096 Score=57.11 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+++.+.... +-+-++|+.|+|||++++....
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 355666666543 5568999999999999998876
No 99
>PRK06547 hypothetical protein; Provisional
Probab=96.96 E-value=0.0013 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=23.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999763
No 100
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.96 E-value=0.00094 Score=53.45 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=28.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDII 218 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~ 218 (261)
..-+.++|+.|+|||.||..+.+. ...+=....|+ +..+++..|-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~---------~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFI---------TASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEE---------EHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEe---------ecCceecccc
Confidence 355889999999999999999873 32222234566 3455555543
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.96 E-value=0.0022 Score=57.85 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=31.7
Q ss_pred hhHhHHHHHHHHhc---C--------CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIE---G--------PPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+++.+++|.+.+.. . -...+-|.++|++|+|||++|+.+.+.
T Consensus 136 l~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 136 LEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred cHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 77777777776532 1 123456889999999999999999883
No 102
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.94 E-value=0.0008 Score=51.33 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=19.2
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999875
No 103
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0028 Score=53.69 Aligned_cols=50 Identities=14% Similarity=0.027 Sum_probs=33.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
+..=+.++|.+|+|||.||.++.+. +...=-.+.++ +..+++.++-....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~---------~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFI---------TAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEE---------EHHHHHHHHHHHHh
Confidence 4567889999999999999999984 33221233445 34555555555444
No 104
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.0058 Score=55.63 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=27.1
Q ss_pred hhHhHHHHHHHHhcC-------CCCeEEEEEEeCCCccHHHHHHHH
Q 046049 145 FERGREELFDLLIEG-------PPRLSVVAILDGIGFDMTAFAADA 183 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v 183 (261)
..-..++|.++|... .....+|.++|++|+||||.+..+
T Consensus 75 ~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 75 IKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred HHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHH
Confidence 444455677766432 134689999999999999966544
No 105
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.93 E-value=0.019 Score=56.36 Aligned_cols=86 Identities=15% Similarity=0.269 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHHhccCCCCCCcccccCc-----ccccccccCCCCCCC---------chh--hhHhHHHHHHHHhc---
Q 046049 98 GLHSKIIDIRNRMEQLPPSDNDFDINERR-----DKLIHLLIEGQPRVD---------ESE--FERGREELFDLLIE--- 158 (261)
Q Consensus 98 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~--~~~~~~~l~~~L~~--- 158 (261)
.+..++.+-..|+..+......|....+. ..+... .+....+ +.. .+..++.|.+++..
T Consensus 264 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~--~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~ 341 (775)
T TIGR00763 264 EVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGK--YSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKL 341 (775)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcc--cccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Confidence 66667777777787777777666543310 000000 0000000 000 45666677765531
Q ss_pred -CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 159 -GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 159 -~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+..++.++|++|+|||++|+.+.+
T Consensus 342 ~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 342 RGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 222345899999999999999999988
No 106
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.92 E-value=0.0058 Score=53.45 Aligned_cols=101 Identities=9% Similarity=0.035 Sum_probs=58.0
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS- 228 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~- 228 (261)
++|..+=+.-.++-|+|.+|+|||||+..+........ .-...+|+ +....|+...+ .++.+.++......
T Consensus 87 ~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyI---dtE~~f~~~Rl-~~ia~~~~~~~~~~l 162 (316)
T TIGR02239 87 KLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYI---DTEGTFRPERL-LAIAERYGLNPEDVL 162 (316)
T ss_pred HHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEE---ECCCCCCHHHH-HHHHHHcCCChHHhh
Confidence 34444435678999999999999999988754211111 11356899 87777887764 44555555432210
Q ss_pred cc---cCC-CHHHHHHHH---HHhcc-CCeEEEEeecC
Q 046049 229 VI---IGE-DYQLKKSIL---RDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 229 ~~---~~~-~~~~l~~~l---~~~L~-~kr~LlVlDDV 258 (261)
.+ ... +.+++...+ ...+. .+--|||+|-+
T Consensus 163 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 163 DNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred ccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECc
Confidence 00 011 334433333 33343 34568999975
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=96.91 E-value=0.0013 Score=55.05 Aligned_cols=35 Identities=9% Similarity=0.014 Sum_probs=25.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
...+.|+|..|+|||.|++.+.+ .....-...+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~ 79 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYL 79 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEe
Confidence 36789999999999999999987 322222344566
No 108
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.91 E-value=0.008 Score=54.82 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=29.8
Q ss_pred hhHhHHHHHHHHhcCC------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...-.++|++.|.... ....+|.++|++|+||||++..+..
T Consensus 71 ~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 71 IKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred HHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4445556666664321 2468999999999999999988765
No 109
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.90 E-value=0.0038 Score=52.94 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccc----cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-cc---cC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFY----FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-VI---IG 232 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~~---~~ 232 (261)
..-.+.=|+|++|+|||.|+..+.-+..+... =...+|+ +-...|+...+. +|++....+.... .. ..
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyi---dTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~ 111 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYI---DTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIR 111 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEE---ESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEE---eCCCCCCHHHHH-HHhhccccccchhhhceeeee
Confidence 34579999999999999999877543233221 1357899 888899988775 4666654332110 00 01
Q ss_pred C-CHHHHHHH---HHHhc-cCCeEEEEeecC
Q 046049 233 E-DYQLKKSI---LRDYL-TDKKYFIVLDDV 258 (261)
Q Consensus 233 ~-~~~~l~~~---l~~~L-~~kr~LlVlDDV 258 (261)
. +.+++... +...+ .++=-|||+|.+
T Consensus 112 ~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 112 VFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp -SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred cCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 1 34444433 33334 345679999975
No 110
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.90 E-value=0.00099 Score=58.78 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=39.8
Q ss_pred hhHhHHHHHHHHhcC----CCCeEEEEEEeCCCccHHHHHHHHHcCCCc-----ccccceeeE
Q 046049 145 FERGREELFDLLIEG----PPRLSVVAILDGIGFDMTAFAADAFNNNHV-----KFYFDCHAW 198 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-----~~~F~~~~w 198 (261)
.++.++++++++... ....+++.++|++|+||||||..+.+.... .+.|-..-|
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 777888888888542 235689999999999999999999773322 224555556
No 111
>PLN03025 replication factor C subunit; Provisional
Probab=96.90 E-value=0.0051 Score=53.86 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=26.6
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++.++.|..++..+ +.+.+-++|++|+||||+|+.+.+
T Consensus 19 ~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 19 EDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 33445555555433 244567899999999999998876
No 112
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.89 E-value=0.0066 Score=52.92 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP 223 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~ 223 (261)
+|.++=..-.++-|+|++|+|||||+..+.-...... .=...+|| +...+|+...+. ++++.++.
T Consensus 87 ~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi---~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 87 LLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI---DTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEE---ECCCCCCHHHHH-HHHHHcCC
Confidence 3433334578999999999999999988865322211 01267899 888888887754 44555543
No 113
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.89 E-value=0.00076 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988773
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.86 E-value=0.0017 Score=60.21 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=29.8
Q ss_pred hhHhHHHHHHHHhc-----------CCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIE-----------GPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+..+++|.+.+.- +-...+-+.++|++|+|||++|+.+++.
T Consensus 187 l~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 187 LDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 56666666665421 0123455889999999999999999983
No 115
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.86 E-value=0.0019 Score=57.09 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.....++|+|++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999994
No 116
>PRK06762 hypothetical protein; Provisional
Probab=96.86 E-value=0.00092 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.85 E-value=0.007 Score=52.76 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=32.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+...+.+..++..+ .-.+++-++|++|+||||+|+.+++.
T Consensus 26 ~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 26 PAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred cHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 566677777777653 33568888999999999999999873
No 118
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.012 Score=51.36 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=46.5
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC----CCcccccceeeEEeccc-ccCCCCHHHHHHHHHHH
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN----NHVKFYFDCHAWVKNLS-VSIAYDFGKILDDIIKS 220 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~~~-vs~~~~~~~il~~i~~~ 220 (261)
+..++.+..++..+ .-.+.+-++|+.|+||||+|+.++.. .....|+|...|. . -+.....+. .+++.+.
T Consensus 10 ~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~---~~~~~~i~v~~-ir~~~~~ 84 (313)
T PRK05564 10 ENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK---PINKKSIGVDD-IRNIIEE 84 (313)
T ss_pred HHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec---cccCCCCCHHH-HHHHHHH
Confidence 44456677777544 23467789999999999999988762 1234577777776 5 344455555 4455554
Q ss_pred hC
Q 046049 221 VM 222 (261)
Q Consensus 221 l~ 222 (261)
+.
T Consensus 85 ~~ 86 (313)
T PRK05564 85 VN 86 (313)
T ss_pred Hh
Confidence 44
No 119
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.84 E-value=0.00092 Score=53.52 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 120
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.81 E-value=0.00078 Score=54.71 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 121
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0062 Score=51.41 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=50.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecc---cccCCCCHHHHHHHHHHHhCCCCCCccccCC--CHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNL---SVSIAYDFGKILDDIIKSVMPPSRVSVIIGE--DYQ 236 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~--~~~ 236 (261)
.-.++++||..|+|||||++.+.. -.+..+. .++..-. ..+ .....+-..+++..++........++. +-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~pt~G-~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEEPTSG-EILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcCCCCc-eEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 457999999999999999999987 3332222 2333000 111 122344566777777754321111111 222
Q ss_pred HHHH-HHHHhccCCeEEEEeec
Q 046049 237 LKKS-ILRDYLTDKKYFIVLDD 257 (261)
Q Consensus 237 ~l~~-~l~~~L~~kr~LlVlDD 257 (261)
+.+. .|...|.-+-=|||+|.
T Consensus 114 QrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecC
Confidence 2222 35556666677777775
No 122
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.0029 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=17.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
++||.+||+.|+||||.+-++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHH
Confidence 3799999999999999554443
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.002 Score=54.60 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=25.4
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 159 GPPRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 159 ~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
.+..+..+-++|++|.||||||..+.+..
T Consensus 48 r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 48 RGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred cCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 34578899999999999999999999844
No 124
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0077 Score=56.15 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=32.9
Q ss_pred hhHhHHHHHHHHhcC--C--------CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 145 FERGREELFDLLIEG--P--------PRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~--------~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
++....++.+++..- + ...+=+-++|++|+|||.||+.+.+.-
T Consensus 195 ~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 195 LDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 788888887776542 1 234567799999999999999999943
No 125
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.77 E-value=0.0039 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.++|++|+||||++..+..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999999887765
No 126
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=53.90 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+..++.....|.|+|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4555566788999999999999999999875
No 127
>PRK08149 ATP synthase SpaL; Validated
Probab=96.76 E-value=0.0059 Score=55.37 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=51.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-..++|+|..|+|||||.+.+...... +..+.. .+. ..-....+..+............ ...+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g---~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r 222 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIG---LIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR 222 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEE---EEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH
Confidence 3468899999999999999999874321 222223 333 23345566666655433211100 00010
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
........+.+++ ++|+.||++||+
T Consensus 223 ~~a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 223 CNAALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HhHHHHHHHHHHHHHHcCCCEEEEccch
Confidence 1122333455555 589999999997
No 128
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.76 E-value=0.0046 Score=53.29 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=21.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999986643
No 129
>PRK03839 putative kinase; Provisional
Probab=96.75 E-value=0.0011 Score=53.04 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.|.|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 130
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0018 Score=50.35 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=32.8
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCC
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPS 225 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~ 225 (261)
+|.|-|++|+||||+|+.+.++-..+ . .+...++++|++..+..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~------------~----vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK------------L----VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc------------e----eeccHHHHHHHHHcCCCH
Confidence 78999999999999999998743221 1 244567777777776543
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.74 E-value=0.0034 Score=57.26 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=29.7
Q ss_pred hhHhHHHHHHHHhc---C--------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE---G--------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..+++|.+.+.- . -....-+.++|++|+|||++|+.+.+
T Consensus 188 l~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 188 LEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 66667766665521 1 02344577899999999999999998
No 132
>PTZ00035 Rad51 protein; Provisional
Probab=96.73 E-value=0.014 Score=51.49 Aligned_cols=101 Identities=10% Similarity=0.043 Sum_probs=58.0
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcc---c-ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVK---F-YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS- 228 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~- 228 (261)
++|.++=+.-.++-|+|++|+|||||+..+.-..... . .=...+|+ .-...|++..+ ..+.++++......
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyI---dtE~~f~~eri-~~ia~~~g~~~~~~l 184 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYI---DTEGTFRPERI-VQIAERFGLDPEDVL 184 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEE---EccCCCCHHHH-HHHHHHhCCChHhHh
Confidence 3444443567899999999999999998875422211 1 11245688 77777887774 44455555432110
Q ss_pred ccc---CC-CHHHHHHHH---HHhc-cCCeEEEEeecC
Q 046049 229 VII---GE-DYQLKKSIL---RDYL-TDKKYFIVLDDV 258 (261)
Q Consensus 229 ~~~---~~-~~~~l~~~l---~~~L-~~kr~LlVlDDV 258 (261)
.++ .. +.+++...+ ...+ .++--|||+|-+
T Consensus 185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 000 11 344444443 3333 344568999976
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.73 E-value=0.013 Score=51.03 Aligned_cols=40 Identities=18% Similarity=0.014 Sum_probs=31.5
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.++.++.+..++.... .+.+.++|++|+||||+++.+.+.
T Consensus 22 ~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 22 QEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred cHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 6667777887775533 445799999999999999999773
No 134
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0047 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..++.++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987754
No 135
>PRK05439 pantothenate kinase; Provisional
Probab=96.72 E-value=0.012 Score=51.22 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=22.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998866
No 136
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.009 Score=55.97 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=28.9
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..+..|...+..+ .-.+.+-++|+.|+||||+|+.+.+
T Consensus 21 q~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 21 QQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred cHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555666666543 2345577899999999999998875
No 137
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0082 Score=58.81 Aligned_cols=40 Identities=13% Similarity=-0.048 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..+..|.+++..+. =.+.+-++|+.|+||||+|+.+.+
T Consensus 21 Qe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 21 QSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred cHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444555666665432 234458999999999999999987
No 138
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.012 Score=52.80 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.++|+++|++|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999998887753
No 139
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.013 Score=52.99 Aligned_cols=107 Identities=10% Similarity=0.052 Sum_probs=66.5
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
|+.+++.+.+++... .+..+-+-|.|.+|.|||.+...++.+..-...=-+++.+. |.| --....|+..|...+.
T Consensus 155 Re~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in--c~s-l~~~~aiF~kI~~~~~ 231 (529)
T KOG2227|consen 155 RELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN--CTS-LTEASAIFKKIFSSLL 231 (529)
T ss_pred hHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe--ecc-ccchHHHHHHHHHHHH
Confidence 899999999888653 24567788899999999999999988532211111334441 222 1245567777777662
Q ss_pred CCCCCccccCCCHHHHHHHHHHhccCC--eEEEEeecC
Q 046049 223 PPSRVSVIIGEDYQLKKSILRDYLTDK--KYFIVLDDV 258 (261)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDDV 258 (261)
..... .....+.+..+.+...+. .||+|||.+
T Consensus 232 q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEm 265 (529)
T KOG2227|consen 232 QDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEM 265 (529)
T ss_pred HHhcC----CchhHHHHHHHHHHHhcccceEEEEechh
Confidence 22210 113345566666666543 599999964
No 140
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.0095 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=19.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999997766543
No 141
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.68 E-value=0.01 Score=53.06 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVI 230 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~ 230 (261)
++-+.|..+=..-.++.|.|.+|+|||||+..+... ....-...+|+ +.. .+...+... ...++.......-
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYv---s~E--Es~~qi~~R-a~rlg~~~~~l~l 141 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYV---SGE--ESPEQIKLR-ADRLGISTENLYL 141 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEE---ECC--cCHHHHHHH-HHHcCCCcccEEE
Confidence 344444333344679999999999999999988653 22222355666 543 334443322 3455543321100
Q ss_pred cCC-CHHHHHHHHHHhccCCeEEEEeecC
Q 046049 231 IGE-DYQLKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 231 ~~~-~~~~l~~~l~~~L~~kr~LlVlDDV 258 (261)
... +.+.+...+.+ .+--+||+|.+
T Consensus 142 ~~e~~le~I~~~i~~---~~~~lVVIDSI 167 (372)
T cd01121 142 LAETNLEDILASIEE---LKPDLVIIDSI 167 (372)
T ss_pred EccCcHHHHHHHHHh---cCCcEEEEcch
Confidence 122 55555554432 35567888875
No 142
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.68 E-value=0.0032 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+|.+.|.-|+|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 143
>PRK04040 adenylate kinase; Provisional
Probab=96.68 E-value=0.0015 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998877
No 144
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0047 Score=47.87 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=19.0
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 145
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.65 E-value=0.0047 Score=56.04 Aligned_cols=90 Identities=9% Similarity=0.101 Sum_probs=51.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC-HHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD-FGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-..++|+|..|+|||||++.+.... ..++.+.+ -+..... ..+++.+++..-....... ...+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~---lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R 233 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVG---LVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMR 233 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEE---EEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHH
Confidence 34689999999999999999988632 12455555 5655433 3556666544322111100 00010
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++..|+++||+
T Consensus 234 ~~a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 234 LKGCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112222355555 589999999997
No 146
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0064 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.++.++|+.|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988865
No 147
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.018 Score=51.37 Aligned_cols=40 Identities=13% Similarity=-0.087 Sum_probs=29.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.+...+..+ .-.+.+-++|+.|+||||+|+.+.+
T Consensus 21 q~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 21 QKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHH
Confidence 444555566666543 2345678999999999999998876
No 148
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.62 E-value=0.0016 Score=51.87 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=19.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.|+|++|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 149
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.015 Score=53.66 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=26.6
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.....|...+..+ .-.+.+-++|++|+||||+|+.+.+
T Consensus 21 ~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 21 HVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344455555433 2235678999999999999999866
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.61 E-value=0.003 Score=57.03 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+-+.++|++|+|||+||+.+.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999883
No 151
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.61 E-value=0.0017 Score=51.75 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999988
No 152
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.61 E-value=0.0091 Score=50.42 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999986
No 153
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.009 Score=55.58 Aligned_cols=41 Identities=20% Similarity=0.008 Sum_probs=29.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-+..++.|..++..+. -.+.+.++|++|+||||+|+.+.+.
T Consensus 19 q~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 19 QEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred hHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555666665432 3456799999999999999988763
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.59 E-value=0.007 Score=59.93 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=32.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+.++..+++.|..... .-+-++|++|+||||+|..+..
T Consensus 183 r~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence 99999999999976542 3344889999999999998876
No 155
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.59 E-value=0.0085 Score=54.58 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=48.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCC-------CCCCccccCC-
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP-------PSRVSVIIGE- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~-------~~~~~~~~~~- 233 (261)
.-..++|+|..|+|||||++.+..... .....++. .-...-+...+....+..... +.+++ ....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~l---iGergrev~e~~~~~l~~~r~rtI~vV~qsd~~-~~~r~ 236 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIAL---VGERGREVREFLEDTLADNLKKAVAVVATSDES-PMMRR 236 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeee---cccCCccHHHHhHHHHHHhhCCeEEEEEcCCCC-HHHHH
Confidence 346899999999999999998876321 22233433 222334444444444433211 11100 0000
Q ss_pred CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 ~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++..|+++||+
T Consensus 237 ~~~~~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 237 LAPLTATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122223345555 489999999997
No 156
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.58 E-value=0.016 Score=48.47 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHH
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDI 217 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i 217 (261)
|-++|.++=+.-+++.|.|.+|+|||+||..+... .. ..-...+|| +... ++..+.+.+
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyv---s~ee--~~~~i~~~~ 68 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYV---ALEE--HPVQVRRNM 68 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEE---EeeC--CHHHHHHHH
Confidence 33444444356789999999999999999875431 12 223466777 5543 455565553
No 157
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.58 E-value=0.0015 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=19.3
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 158
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.58 E-value=0.0058 Score=52.65 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=18.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+.++|++|+||||+|+.+..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999976654
No 159
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.57 E-value=0.0034 Score=52.34 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999998866
No 160
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.003 Score=52.39 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|..|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999853
No 161
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0065 Score=57.57 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
.+-|-|.|+.|+|||+||+.+++..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~ 455 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYY 455 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHh
Confidence 4568899999999999999999843
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.56 E-value=0.0076 Score=59.74 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=31.9
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+.++..+++.|..... .-+.++|++|+|||++|..+..
T Consensus 178 r~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 99999999999876542 2334799999999999998876
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=96.54 E-value=0.0071 Score=52.21 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.++|++|+||||+|+.+.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999999966
No 164
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0068 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+|+|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999877754
No 165
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.54 E-value=0.0016 Score=52.56 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=20.0
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 166
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.53 E-value=0.0035 Score=58.74 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=26.2
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.|.....+..+|+|.|+.|+||||||+.+..
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 33443455689999999999999999999976
No 167
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.53 E-value=0.002 Score=50.75 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 168
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.53 E-value=0.0048 Score=52.71 Aligned_cols=22 Identities=9% Similarity=-0.093 Sum_probs=17.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|.|+|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999998876
No 169
>PRK00625 shikimate kinase; Provisional
Probab=96.53 E-value=0.0018 Score=51.57 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=19.0
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 170
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.53 E-value=0.0023 Score=50.81 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999998886
No 171
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.53 E-value=0.0022 Score=49.06 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 172
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.52 E-value=0.0017 Score=52.00 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 173
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.52 E-value=0.0024 Score=49.03 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=24.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcc-cccceeeEE
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVK-FYFDCHAWV 199 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 199 (261)
++|.|+|..|+|||||++.+.+. .. ..+...+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEE
Confidence 48999999999999999999883 33 344444444
No 174
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.51 E-value=0.0017 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.3
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 175
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.49 E-value=0.0045 Score=52.61 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=21.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+....+.++|++|+||||+|+.+.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3456788999999999999999865
No 176
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.49 E-value=0.0021 Score=52.41 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 177
>PRK09087 hypothetical protein; Validated
Probab=96.48 E-value=0.011 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+.+.|+|+.|+|||+|++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998874
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.48 E-value=0.018 Score=48.09 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=28.8
Q ss_pred hhHhHHHHHHHH---hcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLL---IEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L---~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.+++.|++-. ..+ ....-+-++|..|+|||+|++.+.+
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred HHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHH
Confidence 666666666532 222 2356667799999999999999987
No 179
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.46 E-value=0.01 Score=50.56 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=56.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCc--ccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC----
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHV--KFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE---- 233 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~---- 233 (261)
-.-++|.|-.|+|||+|+..+.++... +.+-+.++++ -+.+. ....+++.++.+.-....... ...+.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~---~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA---AMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE---EeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 467899999999999999988775331 2234677888 78765 445666666655422211100 00011
Q ss_pred --CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 234 --DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 234 --~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
-.....-.+.++++ +++.|+++||+
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11222233566663 68999999997
No 180
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.46 E-value=0.014 Score=48.65 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=56.6
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-----
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS----- 228 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~----- 228 (261)
++|..+=+.-+++.|.|.+|+|||||+..+... ..+. =..+.|+ +...+ +..+++++ .+++....+.
T Consensus 16 ~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~---~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~ 87 (234)
T PRK06067 16 RKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVI---TTENT--SKSYLKQM-ESVKIDISDFFLWGY 87 (234)
T ss_pred HhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEE---EcCCC--HHHHHHHH-HHCCCChhHHHhCCC
Confidence 344334356789999999999999999987432 1222 2356777 66544 45555553 3343221100
Q ss_pred --------cc--cCC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049 229 --------VI--IGE-DYQLKKSILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 229 --------~~--~~~-~~~~l~~~l~~~L~~-kr~LlVlDDV 258 (261)
.. ... +.+.+...+...+.. +.=++|+|.+
T Consensus 88 l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 88 LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 00 112 456677777777753 4457888864
No 181
>CHL00176 ftsH cell division protein; Validated
Probab=96.46 E-value=0.0088 Score=57.18 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..++..+++..|.... ...+-+.++|++|+|||+||+.+.+.
T Consensus 191 ~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 191 AKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4455566666654321 12446889999999999999999873
No 182
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0028 Score=50.31 Aligned_cols=24 Identities=21% Similarity=-0.015 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999998876
No 183
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.027 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.++|.++|++|+||||++..+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999997776643
No 184
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.44 E-value=0.0026 Score=51.18 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999774
No 185
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.022 Score=51.17 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.++|+.|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998776654
No 186
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.42 E-value=0.0041 Score=58.09 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=34.9
Q ss_pred hhHhHHHHHHHHh----cCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLI----EGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~----~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+++.++.|++.|. .-+..-+++.++||+|+||||||+.+.+
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 8899999999883 2234568999999999999999999977
No 187
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.42 E-value=0.0081 Score=55.00 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=57.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
+-.-++|+|.+|+|||||+..+.++.. +.+-++.+++ -+... -...+++.++...-....... ...+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~---liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFA---GVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEE---cCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 346789999999999999987776432 2356777888 77654 345666666654322211100 00000
Q ss_pred -CHHHHHHHHHHhc---cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL---TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L---~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++.+|+++||+
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 2223334466676 378999999997
No 188
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.42 E-value=0.014 Score=51.13 Aligned_cols=89 Identities=10% Similarity=0.172 Sum_probs=49.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC------
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE------ 233 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~------ 233 (261)
-..++|+|..|+|||||.+.+..... . ++.+.. .+. ..-....+....+..-....... ...+.
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~---~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIA---LIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEE---EEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 46789999999999999998887422 1 233333 333 23345555555544322111100 00000
Q ss_pred CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 ~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ ++|.+|+++||+
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233345555 589999999996
No 189
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.42 E-value=0.0098 Score=51.92 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCcccc-CCCHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVII-GEDYQLKK 239 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~-~~~~~~l~ 239 (261)
+.-+++-|+|+.|+||||||..+.. .....-..++|| ...+.+++. .+.+++.+.+.---. +...++..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~I---D~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al 120 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFI---DAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQAL 120 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEE---ESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEe---cCcccchhh-----HHHhcCccccceEEecCCcHHHHH
Confidence 4457999999999999999998876 333444677899 877777753 345555544321000 11445555
Q ss_pred HHHHHhcc-CCeEEEEeecC
Q 046049 240 SILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 240 ~~l~~~L~-~kr~LlVlDDV 258 (261)
+.+...++ +..-++|+|-|
T Consensus 121 ~~~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 121 WIAEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHHHHTTSESEEEEE-C
T ss_pred HHHHHHhhcccccEEEEecC
Confidence 66666664 44568899976
No 190
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.0046 Score=57.65 Aligned_cols=89 Identities=15% Similarity=0.005 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC-HHHHHHHHHHHhCCC----CCCccccCC-CHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD-FGKILDDIIKSVMPP----SRVSVIIGE-DYQ 236 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~----~~~~~~~~~-~~~ 236 (261)
-.-..|+|++|+|||||++.|.+.. ..++-++.++|. -|...+. +.++ -+.+... ..+...... ...
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivv--LIgERpeEVtdm----~rsVkgeVVasT~D~p~~~~~~~a 488 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVV--LVDERPEEVTDM----QRSVKGEVIASTFDRPPSDHTTVA 488 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEE--EEeCchhhHHHH----HHhccceEEEECCCCCHHHHHHHH
Confidence 4567899999999999999988821 122334554441 4444332 2233 3333211 110000000 223
Q ss_pred HHHHHHHHhc--cCCeEEEEeecC
Q 046049 237 LKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 237 ~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.+.-.+.++| .++.+||+||++
T Consensus 489 ~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 489 ELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3444456666 689999999986
No 191
>PRK06217 hypothetical protein; Validated
Probab=96.41 E-value=0.0024 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..|.|.|++|+||||||+.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 192
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.40 E-value=0.011 Score=53.86 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=51.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
+-..++|+|..|+|||||++.+.+... -+..+.+ -+.... ...++..+.+..-+...... ...+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~---~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r 229 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIG---LIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMR 229 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEE---EEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHH
Confidence 457889999999999999999987432 1344445 555443 33455554444322111100 00011
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++.+|+++||+
T Consensus 230 ~~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 230 RQAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233355666 589999999997
No 193
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.39 E-value=0.017 Score=56.20 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=59.3
Q ss_pred HHHh-cCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccC
Q 046049 154 DLLI-EGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIG 232 (261)
Q Consensus 154 ~~L~-~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~ 232 (261)
.+|- .+=+.-+++-|.|++|+|||||+..+.-. ....=...+|+ .....+++ ..+++++.+.....-..
T Consensus 50 ~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yI---d~E~t~~~-----~~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFI---DAEHALDP-----DYAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---CCccchhH-----HHHHHcCCChhHeEEec
Confidence 3443 23355788999999999999999765442 11222456899 77777774 36677776543211111
Q ss_pred C-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049 233 E-DYQLKKSILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 233 ~-~~~~l~~~l~~~L~~-kr~LlVlDDV 258 (261)
. ..++....+...++. +--|||+|-|
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSV 147 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcch
Confidence 2 455566666666643 5567899965
No 194
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.39 E-value=0.0029 Score=47.54 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=18.5
Q ss_pred EEEEeCCCccHHHHHHHHHcCCCcccccc
Q 046049 166 VAILDGIGFDMTAFAADAFNNNHVKFYFD 194 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~ 194 (261)
+-|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67899999999999999988 5556664
No 195
>PRK14974 cell division protein FtsY; Provisional
Probab=96.38 E-value=0.031 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=20.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|.++|++|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997666654
No 196
>PRK13947 shikimate kinase; Provisional
Probab=96.38 E-value=0.0025 Score=50.29 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=19.2
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|.|+||+|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999877
No 197
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.36 E-value=0.0025 Score=49.16 Aligned_cols=22 Identities=5% Similarity=0.145 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+|.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4778999999999999998774
No 198
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.0034 Score=51.02 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998876
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.35 E-value=0.0037 Score=61.73 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=32.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+.++..+++.|.... ..-+-++|++|+||||+|..+..
T Consensus 192 r~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 192 RDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 9999999999887654 22344899999999999998876
No 200
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.35 E-value=0.0043 Score=52.68 Aligned_cols=93 Identities=22% Similarity=0.169 Sum_probs=58.3
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC----------
Q 046049 158 EGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV---------- 227 (261)
Q Consensus 158 ~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~---------- 227 (261)
.+=+.-+++.|.|.+|+|||+++.+... ....+...++|| +...+ ...+++.+.+ ++.....
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyv---s~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~ 89 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYV---STEES--PEELLENARS-FGWDLEVYIEKGKLAIL 89 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEE---EecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEE
Confidence 3335679999999999999999988776 444558889999 76654 4445544433 3322110
Q ss_pred ------cc----ccC-C-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049 228 ------SV----IIG-E-DYQLKKSILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 228 ------~~----~~~-~-~~~~l~~~l~~~L~~-kr~LlVlDDV 258 (261)
.. ... . +...+...|.+.... +..-+|+|.+
T Consensus 90 d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi 133 (260)
T COG0467 90 DAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSI 133 (260)
T ss_pred EccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 00 011 2 566677777776643 3556677765
No 201
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.027 Score=52.54 Aligned_cols=40 Identities=10% Similarity=-0.123 Sum_probs=29.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..+..|.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 21 q~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 21 QAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred CHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4555667777775542 234578999999999999998865
No 202
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.34 E-value=0.0037 Score=50.07 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=28.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
.++|.|+|+.|+|||||++.+.. ....+|...++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceee
Confidence 46889999999999999999988 555677655555
No 203
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.34 E-value=0.0035 Score=46.04 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEeCCCccHHHHHHHHHcCC
Q 046049 166 VAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~~ 187 (261)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999988654
No 204
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.021 Score=51.02 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+++++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998877754
No 205
>PRK13949 shikimate kinase; Provisional
Probab=96.32 E-value=0.0029 Score=50.16 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=19.2
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|.|+||+|+||||+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998876
No 206
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.32 E-value=0.013 Score=55.28 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.|+|..|+|||.|++.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~ 336 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH 336 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999998
No 207
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.31 E-value=0.0054 Score=49.44 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+..+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999873
No 208
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.31 E-value=0.0044 Score=55.23 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=28.0
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHH-HHHHHHc
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTA-FAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTt-La~~v~~ 185 (261)
..+....+..++.++ -.+-++|++||+.|+|||| ||+....
T Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 183 FSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred HHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHH
Confidence 444444555555443 0236899999999999998 8887654
No 209
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.029 Score=53.46 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=30.5
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.....|..++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 20 Qe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 20 QNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 5555677777776543 246778999999999999998865
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0034 Score=47.72 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=28.6
Q ss_pred EEEEeCCCccHHHHHHHHHcCCCcccccceee-EEecccccCCCCHHHHHH
Q 046049 166 VAILDGIGFDMTAFAADAFNNNHVKFYFDCHA-WVKNLSVSIAYDFGKILD 215 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~vs~~~~~~~il~ 215 (261)
|-++|++|+|||+||+.+.. .. .... -+ .++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i---~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRI---NCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEE---E-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEE---Eecccccccccee
Confidence 56899999999999998887 22 2222 23 6677777776654
No 211
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.29 E-value=0.004 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 212
>PRK04296 thymidine kinase; Provisional
Probab=96.29 E-value=0.0057 Score=49.46 Aligned_cols=22 Identities=5% Similarity=-0.096 Sum_probs=18.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.|.|+.|.||||++.....
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH
Confidence 4778899999999998877665
No 213
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.037 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.||+++|+.|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999997777654
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0093 Score=51.60 Aligned_cols=29 Identities=7% Similarity=0.058 Sum_probs=24.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVK 190 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~ 190 (261)
.-++|-+.||+|.|||+|.+.+.+.-.++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 35789999999999999999999855443
No 215
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.0034 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..++|+|++|+|||||.+.+.-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999853
No 216
>PRK13975 thymidylate kinase; Provisional
Probab=96.26 E-value=0.0037 Score=50.51 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|.|.|+.|+||||+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 217
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.26 E-value=0.0082 Score=48.22 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=19.7
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 218
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.26 E-value=0.004 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|+|||||.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEccCCCccccceeeecc
Confidence 35899999999999999999876
No 219
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.26 E-value=0.0034 Score=48.49 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=18.6
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|.++|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 220
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.039 Score=53.38 Aligned_cols=40 Identities=15% Similarity=-0.031 Sum_probs=29.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 21 Qe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 21 QEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred cHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 5555667777775543 245556999999999999987765
No 221
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.25 E-value=0.0079 Score=50.58 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...++++.|.....+..+|+|.|++|+||+||.-.+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45566776766556789999999999999999887754
No 222
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.25 E-value=0.0035 Score=49.89 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999988763
No 223
>PRK04328 hypothetical protein; Provisional
Probab=96.25 E-value=0.02 Score=48.36 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=31.7
Q ss_pred HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC
Q 046049 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI 206 (261)
Q Consensus 154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~ 206 (261)
++|..+=+.-+++.|.|.+|+|||+|+..+... ..+. -...+|+ +...
T Consensus 14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyi---s~ee 61 (249)
T PRK04328 14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYV---ALEE 61 (249)
T ss_pred HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEE---EeeC
Confidence 344333345789999999999999999875442 2222 3456777 6544
No 224
>PRK14530 adenylate kinase; Provisional
Probab=96.25 E-value=0.0034 Score=51.74 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 225
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.24 E-value=0.0096 Score=54.28 Aligned_cols=90 Identities=10% Similarity=0.130 Sum_probs=49.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-..++|+|..|+|||||++.+.... ..+..+.. .+... .....+...+...-....... ...+.
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g---~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r 239 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVG---LIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMR 239 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEE---EeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHH
Confidence 34679999999999999999987632 12333333 33332 344555555544432221100 00000
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
........+.+++ ++++.||++||+
T Consensus 240 ~~a~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 240 LRAAMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecch
Confidence 1122223355555 589999999997
No 226
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.24 E-value=0.0083 Score=55.82 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+=+-++|++|+|||+||+.+.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 34778999999999999999874
No 227
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0034 Score=50.23 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.7
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 228
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.23 E-value=0.0049 Score=50.16 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|+|+.|+||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999987765
No 229
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.23 E-value=0.046 Score=45.29 Aligned_cols=43 Identities=28% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
+|..+=+.-..+.|.|.+|+|||||+..+... ..+ .-...+|+
T Consensus 12 ~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~i 54 (229)
T TIGR03881 12 LLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYV 54 (229)
T ss_pred hhcCCCcCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEE
Confidence 34333245689999999999999999876432 111 22356777
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.23 E-value=0.018 Score=48.92 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=28.6
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..-++.+..++..+ .-+-+.|++|+|||+||+.+..
T Consensus 7 ~~~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 7 VKRVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH
Confidence 566667777777543 3455899999999999999986
No 231
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.23 E-value=0.033 Score=51.10 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVI 230 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~ 230 (261)
++-++|..+=..-.++.|.|.+|+|||||+..+..... .+=...+|+ +... +...+... ++.++.......-
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYv---s~Ee--s~~qi~~r-a~rlg~~~~~l~~ 139 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYV---SGEE--SASQIKLR-AERLGLPSDNLYL 139 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEE---Eccc--cHHHHHHH-HHHcCCChhcEEE
Confidence 34444443334467999999999999999988866321 111345666 5433 34444333 4455543221101
Q ss_pred cCC-CHHHHHHHHHHhccCCeEEEEeecC
Q 046049 231 IGE-DYQLKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 231 ~~~-~~~~l~~~l~~~L~~kr~LlVlDDV 258 (261)
... +.+.+...+.+ .+-=+||+|.+
T Consensus 140 ~~e~~l~~i~~~i~~---~~~~lVVIDSI 165 (446)
T PRK11823 140 LAETNLEAILATIEE---EKPDLVVIDSI 165 (446)
T ss_pred eCCCCHHHHHHHHHh---hCCCEEEEech
Confidence 112 55555554433 24457888865
No 232
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.23 E-value=0.0029 Score=49.62 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=18.4
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998763
No 233
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.025 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++++|+.|+||||+..++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998876643
No 234
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.21 E-value=0.0027 Score=46.33 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=17.2
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|-|+|++|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998654
No 235
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.20 E-value=0.009 Score=52.52 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|++.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555544345678999999999999999998755
No 236
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.20 E-value=0.032 Score=50.65 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=28.2
Q ss_pred hhHhHHHHHHHHhcC-------CCCeEEEEEEeCCCccHHHHHHHHH
Q 046049 145 FERGREELFDLLIEG-------PPRLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
..--.++|.++|... .....+|.++|++|+||||++..+.
T Consensus 75 ~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 75 QHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444455566655422 1246899999999999999887774
No 237
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.20 E-value=0.017 Score=52.50 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-..++|+|..|+|||||++.+...
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468999999999999999999874
No 238
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.20 E-value=0.008 Score=54.71 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-..++|+|..|+|||||.+.+...
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCC
Confidence 3578999999999999999988873
No 239
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.19 E-value=0.0051 Score=47.99 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|-|.|.+|+||||||+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999987
No 240
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.17 E-value=0.013 Score=52.97 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=48.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-..++|+|..|+|||||.+.+.+... . ++.+.+ .+.... ...++...+...-....... ...+.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~--~--~~~vi~---~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r 208 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE--A--DVVVVG---LIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMR 208 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC--C--CEEEEE---EEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHH
Confidence 346799999999999999998887322 1 233333 444432 33444444433311111000 00010
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ ++++.|+++||+
T Consensus 209 ~~a~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 209 LRAAFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1112223345555 589999999997
No 241
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.17 E-value=0.015 Score=56.63 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=31.7
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|+.++..+++.|..... .. +-++|++|+|||++|+.+..
T Consensus 191 R~~ei~~~i~iL~r~~~-~n-~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 191 REKELERAIQVLCRRRK-NN-PLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCHHHHHHHHHHhccCC-CC-eEEECCCCCCHHHHHHHHHH
Confidence 89999999998876432 22 34799999999999999876
No 242
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.15 E-value=0.022 Score=52.85 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS 228 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~ 228 (261)
...+-++|..+=..-+++.|.|++|+|||||+.+..... ..+=+..+++ |-.-+...+...+ ++++......
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~-----s~eEs~~~i~~~~-~~lg~~~~~~ 320 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILF-----AYEESRAQLLRNA-YSWGIDFEEM 320 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEE-----EeeCCHHHHHHHH-HHcCCChHHH
Confidence 445555665554567899999999999999998776521 1222344555 3444566666664 5555432210
Q ss_pred ----------cccCC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049 229 ----------VIIGE-DYQLKKSILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 229 ----------~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDDV 258 (261)
..... ..++....+.+.+.. +.-++|+|.+
T Consensus 321 ~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 321 EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 00112 456677777777753 3456788864
No 243
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0039 Score=49.08 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=18.4
Q ss_pred EEEEEeCCCccHHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~ 184 (261)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999875
No 244
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.14 E-value=0.018 Score=52.55 Aligned_cols=90 Identities=8% Similarity=0.135 Sum_probs=49.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
+-..++|.|..|+|||||.+.+...... +..+.+ -+. +.....++...+...-....... ...+.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~---~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r 234 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIA---LIGERGREVREFIELILGEDGMARSVVVCATSDRSSIER 234 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEE---EEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHH
Confidence 4578999999999999999999874321 222222 233 23344444455443322111100 00010
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++..|+++||+
T Consensus 235 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 235 AKAAYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233355566 489999999997
No 245
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.0042 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999998773
No 246
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.14 E-value=0.034 Score=44.75 Aligned_cols=22 Identities=18% Similarity=-0.106 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|+|.|..|+||||+++.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 247
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.14 E-value=0.011 Score=53.95 Aligned_cols=93 Identities=10% Similarity=0.184 Sum_probs=56.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-.-++|.|.+|+|||+|+..+..+.. +.+-++++++ -+.... ...++++++...-....... ...+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~---~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r 212 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFC---GIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGAR 212 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEE---EeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHH
Confidence 346789999999999999988766422 2334677888 776554 34566666654322111100 00010
Q ss_pred -CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
-.....-.+.++++ ++..|+++||+
T Consensus 213 ~~~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 213 FRVGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 12223344667764 58999999997
No 248
>PRK05922 type III secretion system ATPase; Validated
Probab=96.13 E-value=0.023 Score=51.68 Aligned_cols=89 Identities=4% Similarity=0.090 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCCc--cccCC------
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRVS--VIIGE------ 233 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~------ 233 (261)
-..++|+|..|+|||||.+.+.... +.++.+.+ .++. .......+.+............ ...+.
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~---liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIA---LIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEE---EeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 4578999999999999999998732 12333333 2222 2233445544443332221110 00010
Q ss_pred CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 ~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++++|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233355666 589999999997
No 249
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.12 E-value=0.0051 Score=50.35 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++++|+++|+.|+|||||...+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998876
No 250
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.12 E-value=0.0077 Score=49.68 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=49.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCC--ccccCCC------
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRV--SVIIGED------ 234 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~--~~~~~~~------ 234 (261)
.-++|+|.+|+|||+|+..+.++.. -++.+++ .+.+. ....++.+++...-..+... ....+..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~---~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYA---LIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEE---EESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeee---eccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 5789999999999999998877432 2233666 66654 34455666654331111100 0000100
Q ss_pred HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 235 YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 235 ~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.....-.+.+++ .+|..|+++||+
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhccchhhhHHHhhcCCceeehhhhh
Confidence 111112233444 689999999996
No 251
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.11 E-value=0.024 Score=51.52 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=49.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCCc--cccCC-C---
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRVS--VIIGE-D--- 234 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~-~--- 234 (261)
.-..++|+|..|+|||||.+.+.+.. +.+..+++ .+.. .....+++.+....-....... ...+. -
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~---~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r 226 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLV---LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER 226 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEE---EECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHH
Confidence 45689999999999999999988732 23444555 4443 3334455554432110000000 00011 1
Q ss_pred --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 235 --YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 235 --~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.....-.+.+++ +++++||++||+
T Consensus 227 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 227 VRALFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 111233355666 589999999997
No 252
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.049 Score=51.09 Aligned_cols=40 Identities=15% Similarity=-0.029 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.|..++..+. -.+.+-++|+.|+||||+|+.+..
T Consensus 21 q~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 21 QEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred cHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445556666665432 235567899999999999998865
No 253
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.019 Score=52.16 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=50.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-..++|+|..|+|||||.+.+....+. +..+.. -+. +.....+.+...+..-+...... ...+.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~---~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r 227 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVIS---LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ 227 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC----CeEEEE---eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH
Confidence 3468899999999999999998874321 122212 222 33566666665555432211100 00010
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.......+.+++ +++..||++||+
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 1222333455555 479999999996
No 254
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.11 E-value=0.005 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.|++|+|++|+|||||.+.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 357999999999999999999976
No 255
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.10 E-value=0.0045 Score=52.28 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+...|-++||+|+||||..+.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45678889999999999999999874
No 256
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.10 E-value=0.004 Score=48.66 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
|++|+|+.|+|||||+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998887
No 257
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.10 E-value=0.022 Score=51.75 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=51.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc-ccc-CCC----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS-VII-GED---- 234 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~-~~~-~~~---- 234 (261)
+-..++|.|..|+|||||.+.+.+... -++.+.+ -+.... ...++....+..-+...... ... +..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~---liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R 233 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLA---LIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMER 233 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEE---EEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHH
Confidence 356899999999999999999988432 2456666 665543 33444444333211111100 000 101
Q ss_pred --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 235 --YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 235 --~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.....-.+.+++ .+|+.|+++||+
T Consensus 234 ~~a~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 234 AKAGFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 111122355555 589999999997
No 258
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.09 E-value=0.02 Score=52.02 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+-..++|+|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 4578999999999999999988773
No 259
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.039 Score=52.55 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=28.6
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..+..|.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 21 Qe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 21 QEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445556666665542 346678999999999999998843
No 260
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.07 E-value=0.054 Score=43.45 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.+.+..+ .-.+.+-++|+.|+||||+|+.+..
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555433 2236788999999999999987755
No 261
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.07 E-value=0.012 Score=57.54 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...++.++|+.|+|||+||+.+..
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHH
Confidence 356789999999999999999987
No 262
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.01 Score=47.35 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
-.++.|.|++|+||+||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999954
No 263
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.03 E-value=0.0055 Score=50.44 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 264
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.03 E-value=0.0055 Score=50.16 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999975
No 265
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.03 E-value=0.014 Score=53.42 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=54.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-.-++|.|..|+|||||+..+..+... ++=+..+++ -+... ....+++.++...-....... ...+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~---liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r 218 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFA---GVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGAR 218 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEE---EeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 3467899999999999999877543221 111355666 66544 345666776665422211100 00011
Q ss_pred -CHHHHHHHHHHhc---cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL---TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L---~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++.+||++||+
T Consensus 219 ~~a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 219 LRVALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecch
Confidence 1222334467777 679999999997
No 266
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.02 E-value=0.0054 Score=48.75 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|.|+|+.|+||||+++.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999976
No 267
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.052 Score=50.56 Aligned_cols=40 Identities=13% Similarity=-0.145 Sum_probs=27.8
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..+..|...+..+ .-.+-+-++|+.|+||||+|+.+.+
T Consensus 26 q~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 26 QEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred cHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHH
Confidence 344444555544433 2346788999999999999999976
No 268
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.01 E-value=0.025 Score=48.21 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=49.2
Q ss_pred CeEEEEEEeCCCccHHHHH-HHHHcCCCccccccee-eEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-CH
Q 046049 162 RLSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFDCH-AWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-DY 235 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~~ 235 (261)
+-.-++|.|..|+|||+|| ..+.+.. +-+.. +++ -+.... ...++..++.+.-....... ...+. -.
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~---~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~ 140 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYV---AIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAP 140 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEE---ecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchh
Confidence 3467899999999999995 5565521 22333 555 665543 44566666654322111100 00011 11
Q ss_pred H-----HHHHHHHHhc--cCCeEEEEeecC
Q 046049 236 Q-----LKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 236 ~-----~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
. ...-.+.+++ +++..||++||+
T Consensus 141 ~r~~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 141 LQYLAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 1 1123344444 589999999997
No 269
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.00 E-value=0.029 Score=51.83 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=50.4
Q ss_pred eEEEEEEeCCCccHHHHH-HHHHcCCCc-----ccccceeeEEecccccCCCCHHHHHHHHHHHhC-CCCCCc--cccCC
Q 046049 163 LSVVAILDGIGFDMTAFA-ADAFNNNHV-----KFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM-PPSRVS--VIIGE 233 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~-~~~~~~--~~~~~ 233 (261)
-.-++|.|-.|+|||+|| -.+.+...+ .++-..++++ .+.+..+.-.=+.+.+++-+ ...... ...+.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyv---aIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYV---SIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEE---EeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 457899999999999997 455554322 1234567788 88776543222333333333 111100 00000
Q ss_pred -C-----HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -D-----YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~-----~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
- ..-..-.+.+++ +++..|||+||+
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 0 011222344444 589999999997
No 270
>PRK08356 hypothetical protein; Provisional
Probab=96.00 E-value=0.0061 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCccHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADA 183 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v 183 (261)
..+|.|+|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 271
>PRK14527 adenylate kinase; Provisional
Probab=96.00 E-value=0.0059 Score=49.29 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 272
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.011 Score=53.18 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=26.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFD 194 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~ 194 (261)
....+-|+|..|.|||.|++++.+ ....+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~ 142 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGP 142 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCC
Confidence 478999999999999999999999 4445444
No 273
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.99 E-value=0.0052 Score=48.69 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=17.4
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|.|.|.+|+|||||.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 67999999999999999876
No 274
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.99 E-value=0.011 Score=49.05 Aligned_cols=25 Identities=4% Similarity=-0.027 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....+.|+|+.|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999883
No 275
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.98 E-value=0.028 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|++++|+.|+||||++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999998887765
No 276
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.0056 Score=54.47 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=55.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHH-HHHhCCCCCCccccCCCHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDI-IKSVMPPSRVSVIIGEDYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i-~~~l~~~~~~~~~~~~~~~~l~~ 240 (261)
..+.+.++|.|||||||++-.+-. +..-|..-.|+ ..-.+.+-..++--+ ...++.... .-+.-..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~---vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~ 79 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAF---VDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVD 79 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---Hhhhcccceee---eeccccCchhHhHHHHHhhcccccc-------cchHHHH
Confidence 468999999999999999988776 55667666655 344444444444333 333554432 2233344
Q ss_pred HHHHhccCCeEEEEeecC
Q 046049 241 ILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~~kr~LlVlDDV 258 (261)
.+..++.++|.++|+|+-
T Consensus 80 ~~~~~~~~rr~llvldnc 97 (414)
T COG3903 80 TLVRRIGDRRALLVLDNC 97 (414)
T ss_pred HHHHHHhhhhHHHHhcCc
Confidence 567777888999999873
No 277
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.98 E-value=0.0058 Score=48.78 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.|+|+.|+|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 278
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.98 E-value=0.03 Score=50.82 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCCc--cccCC-C---
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRVS--VIIGE-D--- 234 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~-~--- 234 (261)
.-..++|+|..|+|||||.+.+.... .. +..+.+ .+.. .-...++..+.+..-+...... ...+. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~--~~--~~gvi~---~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r 211 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT--DA--DVVVIA---LVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMR 211 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEE---EEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHH
Confidence 34689999999999999999888742 22 222222 2222 2334445554443322111100 00011 1
Q ss_pred --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 235 --YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 235 --~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.....-.+.+++ +++..|+++||+
T Consensus 212 ~~a~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 212 RQAAYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 111223356666 579999999997
No 279
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.97 E-value=0.035 Score=44.02 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.|.|.+|+||||+|..+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998865
No 280
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.054 Score=51.60 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=28.8
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.|.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 21 Qe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 21 QEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred cHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4455566676665442 245668899999999999998855
No 281
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.96 E-value=0.0057 Score=50.09 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 578899999999999999998753
No 282
>PLN02348 phosphoribulokinase
Probab=95.96 E-value=0.0089 Score=53.40 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 160 PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 160 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..-+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998876
No 283
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.96 E-value=0.006 Score=50.14 Aligned_cols=23 Identities=13% Similarity=0.119 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 284
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.049 Score=52.23 Aligned_cols=40 Identities=20% Similarity=0.051 Sum_probs=30.4
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..+..|.+++..+. -.+-+-++|+.|+||||+|+.+..
T Consensus 21 Qe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 21 QEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 5666677777776542 245678999999999999998865
No 285
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.96 E-value=0.0092 Score=51.83 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++-+........+|+|+|++|+|||||+..+..
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34444433345689999999999999999988765
No 286
>PRK04182 cytidylate kinase; Provisional
Probab=95.95 E-value=0.0061 Score=48.28 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=20.3
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999873
No 287
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.95 E-value=0.012 Score=47.42 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=27.0
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+...++...... -..+.|+|+.|+|||||++.+..
T Consensus 11 ~~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 11 SPLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CHHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 34445555554443 46899999999999999998865
No 288
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.95 E-value=0.0075 Score=46.62 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEEeCCCccHHHHHHHHHcCC
Q 046049 165 VVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
-|+++|.+|+|||||.+.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999887643
No 289
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.94 E-value=0.021 Score=55.81 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=29.8
Q ss_pred hhHhHHHHHHHHhc---CC--------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE---GP--------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~~--------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|.+++.. .+ ....-+.++|++|+||||||+.+.+
T Consensus 183 ~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 183 LKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 66667776665521 10 2235678999999999999999988
No 290
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.02 Score=53.25 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=25.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccce
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC 195 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~ 195 (261)
....+-++|++|+|||.||+.+.+ ....+|-.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~ 306 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS 306 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE
Confidence 456889999999999999999999 44445543
No 291
>PLN02796 D-glycerate 3-kinase
Probab=95.93 E-value=0.007 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+|+|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999999876
No 292
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.93 E-value=0.0066 Score=50.21 Aligned_cols=23 Identities=17% Similarity=-0.008 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..++|+|+.|+|||||...+.-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998864
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.92 E-value=0.0066 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 294
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0071 Score=49.65 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.. .+++|+|+.|+|||||++.+..
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhC
Confidence 35 8999999999999999999975
No 295
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.063 Score=47.90 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=30.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+...+.+.+.+..+ .-.+.+-++|++|+||||+|+.+.+
T Consensus 22 ~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 22 QSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred cHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455566777777553 2346888999999999999998866
No 296
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0069 Score=48.29 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 297
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.91 E-value=0.015 Score=50.97 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|+++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998887754
No 298
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.0075 Score=49.07 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998873
No 299
>PLN02200 adenylate kinase family protein
Probab=95.90 E-value=0.0075 Score=50.47 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.90 E-value=0.0068 Score=48.41 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999998863
No 301
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0081 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999887765
No 302
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.89 E-value=0.007 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+++|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999997765
No 303
>PRK13948 shikimate kinase; Provisional
Probab=95.89 E-value=0.007 Score=48.60 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357888999999999999999976
No 304
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.0043 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.|-+.|.+|+||||+|+.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3566789999999999998766
No 305
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.87 E-value=0.042 Score=50.58 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS 228 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~ 228 (261)
...+-++|..+=..-.++.|.|.+|+|||||+..+..... +.. ...+|+ +.. .+...+... +..++......
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a-~~g-~kvlYv---s~E--Es~~qi~~r-a~rlg~~~~~l 151 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA-KNQ-MKVLYV---SGE--ESLQQIKMR-AIRLGLPEPNL 151 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH-hcC-CcEEEE---ECc--CCHHHHHHH-HHHcCCChHHe
Confidence 3344444544434568999999999999999998855211 111 245666 543 334444322 23343322110
Q ss_pred cccCC-CHHHHHHHHHHhccCCeEEEEeecC
Q 046049 229 VIIGE-DYQLKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 229 ~~~~~-~~~~l~~~l~~~L~~kr~LlVlDDV 258 (261)
.-... +.+.+...+.+ .+--++|+|.+
T Consensus 152 ~~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 152 YVLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred EEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 11122 55555555433 23457888864
No 306
>PRK06761 hypothetical protein; Provisional
Probab=95.87 E-value=0.014 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=21.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+|.|.|++|+||||+++.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 307
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.007 Score=50.46 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 308
>PRK06620 hypothetical protein; Validated
Probab=95.85 E-value=0.007 Score=49.94 Aligned_cols=23 Identities=13% Similarity=-0.200 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+-|+|++|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998774
No 309
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0074 Score=49.79 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 310
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.83 E-value=0.0075 Score=49.47 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999865
No 311
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.83 E-value=0.031 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-..++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999988773
No 312
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.83 E-value=0.0075 Score=47.37 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=19.8
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 313
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.83 E-value=0.0082 Score=47.11 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998887
No 314
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.05 Score=51.99 Aligned_cols=40 Identities=18% Similarity=-0.036 Sum_probs=28.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..+..|...+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 21 Qe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 21 QEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444556666665432 234567899999999999998866
No 315
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.82 E-value=0.0064 Score=47.65 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.2
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998873
No 316
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.81 E-value=0.023 Score=48.93 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|+|.+|+|||||...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999998887
No 317
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.0078 Score=49.24 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 318
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.81 E-value=0.0075 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999865
No 319
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.81 E-value=0.0077 Score=49.60 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 320
>PRK13695 putative NTPase; Provisional
Probab=95.81 E-value=0.0073 Score=47.94 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=19.7
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.|+|+|++|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998773
No 321
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.81 E-value=0.0078 Score=48.10 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46999999999999999999876
No 322
>PRK01184 hypothetical protein; Provisional
Probab=95.80 E-value=0.0077 Score=48.17 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=17.1
Q ss_pred EEEEEEeCCCccHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAAD 182 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~ 182 (261)
.+|+|+|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999883
No 323
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0077 Score=50.31 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999965
No 324
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.78 E-value=0.0058 Score=51.24 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=16.4
Q ss_pred EEeCCCccHHHHHHHHHcC
Q 046049 168 ILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 168 IvG~gGiGKTtLa~~v~~~ 186 (261)
|+||+|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999998773
No 325
>PRK13946 shikimate kinase; Provisional
Probab=95.78 E-value=0.0073 Score=48.48 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.|.++||+|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999977
No 326
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0082 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 327
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.77 E-value=0.027 Score=51.43 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+-..++|+|..|+|||||.+.+...
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999988874
No 328
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.77 E-value=0.0083 Score=49.71 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999998865
No 329
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.77 E-value=0.04 Score=48.06 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=47.4
Q ss_pred hHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcc--ccc---ceeeEEecccccCCCCHHHHHHHHHH
Q 046049 146 ERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFNNNHVK--FYF---DCHAWVKNLSVSIAYDFGKILDDIIK 219 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~~~~vs~~~~~~~il~~i~~ 219 (261)
+...+.|.+.|.+.+ ....+|+|.|.=|+||||+.+.+.+.-+-. ..+ ..-+|- .-+.+--...++..|..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~---~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWE---YDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcccc---CCCcchHHHHHHHHHHH
Confidence 445667778777653 678999999999999999999987732222 112 222454 33333334556666666
Q ss_pred HhCC
Q 046049 220 SVMP 223 (261)
Q Consensus 220 ~l~~ 223 (261)
++..
T Consensus 79 ~l~~ 82 (325)
T PF07693_consen 79 QLEK 82 (325)
T ss_pred HHHH
Confidence 6543
No 330
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.76 E-value=0.0098 Score=43.66 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.5
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 331
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.76 E-value=0.019 Score=45.09 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..++|.++|.+ +++.++|..|+||+||...+..+
T Consensus 25 g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 36677777733 68999999999999999999876
No 332
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.75 E-value=0.0086 Score=49.08 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 333
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.74 E-value=0.0082 Score=49.21 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999966
No 334
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.74 E-value=0.0086 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999976
No 335
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.74 E-value=0.0086 Score=49.65 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999999975
No 336
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.73 E-value=0.0089 Score=48.38 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999763
No 337
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.72 E-value=0.0091 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999998865
No 338
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.72 E-value=0.0087 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 339
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0087 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 340
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.71 E-value=0.0097 Score=45.68 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
+-|-++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999997743
No 341
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.70 E-value=0.018 Score=52.24 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-+.++|++|+|||+||+.+..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999976
No 342
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.70 E-value=0.0093 Score=46.60 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|+|+|.+|+|||||+..+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 343
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.0092 Score=49.22 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999976
No 344
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.70 E-value=0.012 Score=45.20 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+|+++|..|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998664
No 345
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.69 E-value=0.0087 Score=51.24 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++|+|+|.+|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998877
No 346
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.69 E-value=0.031 Score=50.66 Aligned_cols=90 Identities=12% Similarity=0.185 Sum_probs=47.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-..++|+|..|+|||||.+.+..... . +..+.. .+.... ...++..+.+.+-+...... ...+.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~--~--~~gvi~---~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r 208 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK--A--DINVIA---LIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMR 208 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--C--CeEEEE---EEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHH
Confidence 457899999999999999998877322 1 222222 333322 33444444433311111000 00000
Q ss_pred -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++..|+++||+
T Consensus 209 ~~~~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 209 LKAAFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 1112333455565 589999999997
No 347
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0082 Score=49.13 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=19.9
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999975
No 348
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.69 E-value=0.0093 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 349
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.67 E-value=0.0091 Score=49.39 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 350
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.66 E-value=0.012 Score=45.77 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|.|+|.+|+|||||...+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 351
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.032 Score=53.18 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=36.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
+.-++.-.+|++|+||||||..|..+. .|. ++=| ..|...+...+-..|...+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GYs-VvEI---NASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEI---NASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cce-EEEe---cccccccHHHHHHHHHHHHh
Confidence 456899999999999999999998842 121 2223 66777666655555554443
No 352
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.071 Score=50.45 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=29.8
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+.+.+..+. -.+-+-++|+.|+||||+|+.+.+
T Consensus 21 Qe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 21 QELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred cHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 5555666777665442 245688999999999999998865
No 353
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.66 E-value=0.0098 Score=48.43 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|.|||||.+.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 354
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.65 E-value=0.0086 Score=48.14 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=18.9
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998773
No 355
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.65 E-value=0.0075 Score=50.83 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=18.8
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999998876
No 356
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.65 E-value=0.035 Score=50.63 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=55.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCccc--ccc---------eeeEEecccccCCCCHHHHHHHHHHHhC-CCCCCc--
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKF--YFD---------CHAWVKNLSVSIAYDFGKILDDIIKSVM-PPSRVS-- 228 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~~vs~~~~~~~il~~i~~~l~-~~~~~~-- 228 (261)
-.-++|.|-.|+|||||+..+.++..... ..| .++++ .+.......+.+.+.+..-+ ......
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a---~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFA---AMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEE---EeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 46789999999999999998876543100 012 55666 77777665665555555544 211100
Q ss_pred cccCC------CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 229 VIIGE------DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 229 ~~~~~------~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
...+. -.....-.+.++++ ++..|+++||+
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 00000 12223334667775 59999999997
No 357
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.64 E-value=0.008 Score=48.05 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=19.2
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 358
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.64 E-value=0.0099 Score=48.46 Aligned_cols=23 Identities=17% Similarity=-0.032 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999976
No 359
>PRK14532 adenylate kinase; Provisional
Probab=95.64 E-value=0.0088 Score=48.02 Aligned_cols=20 Identities=5% Similarity=-0.047 Sum_probs=18.3
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|.+.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999998876
No 360
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.0092 Score=47.17 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=18.7
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|..+||.|+||||+.+.+..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH
Confidence 477899999999999999965
No 361
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.64 E-value=0.032 Score=51.11 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccc--eeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc-ccc-CC----
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFD--CHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS-VII-GE---- 233 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~-~~~-~~---- 233 (261)
-.-++|.|-.|+|||||+..+.+.......+. .++.+ .+... ....+++.++...-....... ... +.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~---~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFA---AMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEE---EccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 46789999999999999998887543321121 45666 66544 445666666654332211100 000 00
Q ss_pred --CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 234 --DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 234 --~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
-.......+.++++ +++.||++||+
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 12222333667775 78899999997
No 362
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.63 E-value=0.01 Score=49.22 Aligned_cols=24 Identities=8% Similarity=-0.118 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999763
No 363
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.01 Score=49.48 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 364
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.01 Score=49.43 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999965
No 365
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.62 E-value=0.01 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999999986
No 366
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.62 E-value=0.01 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 367
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.01 Score=50.32 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 368
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.61 E-value=0.0094 Score=47.03 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=19.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|.|+|+.|+||||+++.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999876
No 369
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.61 E-value=0.011 Score=48.04 Aligned_cols=22 Identities=9% Similarity=-0.156 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998876
No 370
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.61 E-value=0.0098 Score=46.67 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+..-|+|+|++|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3566999999999999999999874
No 371
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.61 E-value=0.0081 Score=51.46 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 372
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.60 E-value=0.011 Score=45.81 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.9
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 373
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.60 E-value=0.082 Score=48.14 Aligned_cols=90 Identities=10% Similarity=0.206 Sum_probs=48.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCC-ccccCC--C---
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRV-SVIIGE--D--- 234 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~-~~~~~~--~--- 234 (261)
.-..++|+|..|+|||||.+.+.... . -+..+.+ .+.. ......+..+........... ...... .
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~~--~--~~~~vi~---~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r 216 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARGA--S--ADVNVIA---LIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLER 216 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEE---EEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHH
Confidence 35678999999999999999998732 2 2333334 3333 334444444433322111110 000011 1
Q ss_pred --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 235 --YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 235 --~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.......+.+++ .+++.|+++||+
T Consensus 217 ~~~~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 217 LKAAYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 112333455555 478999999997
No 374
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.096 Score=49.64 Aligned_cols=40 Identities=20% Similarity=-0.040 Sum_probs=29.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.|..++..+. -.+.+-++|+.|+||||+|+.+..
T Consensus 18 q~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 18 QEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455566777765542 345578999999999999998875
No 375
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.59 E-value=0.0085 Score=51.22 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.7
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~ 184 (261)
+.|+|+|-||+||||++..+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA 21 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIA 21 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHH
Confidence 368999999999999877654
No 376
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.58 E-value=0.014 Score=46.75 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.++|.|+|++|+||+||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999874
No 377
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.58 E-value=0.013 Score=44.63 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=19.3
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999775
No 378
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.57 E-value=0.011 Score=48.45 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 379
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.57 E-value=0.058 Score=53.58 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..++.++|+.|+|||+||+.+.+
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 380
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.57 E-value=0.016 Score=51.92 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|+|+|..|+|||||+..+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~ 27 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR 27 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999998886
No 381
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.57 E-value=0.032 Score=50.28 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=38.4
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHH-HHHHcCCCcccccceee
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFDCHA 197 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~~ 197 (261)
|.+..+.|..||.... -..|.|.||-|+||+.|+ ..+..+.+-.-..||.-
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~ 52 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQ 52 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChH
Confidence 4567889999998765 468999999999999999 77777644333445543
No 382
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.57 E-value=0.01 Score=46.56 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|++|+|+.++|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999998854
No 383
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.57 E-value=0.015 Score=49.84 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHH
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDD 216 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~ 216 (261)
-.+|+..|.....+..+|+|.|.||+||+||.-.+-..-.-+.|==..+=| .=|.+|+-..||-+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAV---DPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV---DPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEE---CCCCCCCCcccccc
Confidence 456677776666778999999999999999987765521111111112222 33666666666644
No 384
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.57 E-value=0.012 Score=45.67 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=18.9
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.|+|.+|+|||||.+.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 385
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.56 E-value=0.019 Score=50.16 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=22.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-..|.++||.|+||||+++.+..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 386
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.096 Score=47.29 Aligned_cols=40 Identities=13% Similarity=-0.133 Sum_probs=27.6
Q ss_pred hHhHHHHHHHHhcCCC--------CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPP--------RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~--------~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..++.|.+++..... -.+-+-++|+.|+||||+|+.+..
T Consensus 11 ~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 11 EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4445556666654321 245688999999999999998754
No 387
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.56 E-value=0.01 Score=49.46 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999975
No 388
>PRK10536 hypothetical protein; Provisional
Probab=95.56 E-value=0.02 Score=48.32 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=30.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+......++.+|.+. .++.+.|+.|+|||+||..+..+
T Consensus 60 ~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 60 RNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 666667777777542 49999999999999999987664
No 389
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.56 E-value=0.015 Score=47.76 Aligned_cols=52 Identities=15% Similarity=0.004 Sum_probs=28.7
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCC-----cccccceeeEEecccccCCCCHHHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNH-----VKFYFDCHAWVKNLSVSIAYDFGKILDDIIK 219 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~ 219 (261)
+..|.|++|.||||++..+..... ....-...+-+ +...+.....++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~---~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILV---VSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEE---EESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhcccccee---ecCCchhHHHHHHHHHh
Confidence 788999999999975554443210 11223344444 44444566677777666
No 390
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.55 E-value=0.011 Score=49.19 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 391
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.55 E-value=0.012 Score=44.58 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEEEeCCCccHHHHHHHHHcCC
Q 046049 165 VVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987754
No 392
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.55 E-value=0.01 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..++++|++|+|||||.+.|.-
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999954
No 393
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.11 Score=47.03 Aligned_cols=40 Identities=15% Similarity=-0.126 Sum_probs=28.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.|..++..+. -.+-+-++|+.|+||||+|..+.+
T Consensus 21 q~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 21 QEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 3444556666665432 234577899999999999998765
No 394
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.54 E-value=0.026 Score=45.87 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=19.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..|.|++|+||||+.+.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHH
Confidence 6788899999999999998766
No 395
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.54 E-value=0.012 Score=45.48 Aligned_cols=21 Identities=5% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.++|.+|+|||||.+.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999764
No 396
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.53 E-value=0.014 Score=44.82 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.|+|++|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988653
No 397
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.53 E-value=0.028 Score=46.91 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=32.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
+.-.++.|.|++|+|||||+..+... ..++. ...+++ + ..-+..++++.+ .+++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi---~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYV---S--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEE---e--CCCCHHHHHHHH-HHhC
Confidence 34569999999999999997554332 22222 233555 4 344556666665 3444
No 398
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.52 E-value=0.02 Score=53.07 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+-|-++|++|+|||.+|+.+.+.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999883
No 399
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.52 E-value=0.011 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 400
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.09 Score=48.72 Aligned_cols=39 Identities=10% Similarity=-0.073 Sum_probs=26.4
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..++.|.+.+..+. -.+-+-++|+.|+||||+|+.+..
T Consensus 19 e~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 19 DVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 344444555554332 235788999999999999988754
No 401
>PRK15453 phosphoribulokinase; Provisional
Probab=95.51 E-value=0.012 Score=50.29 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998764
No 402
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.51 E-value=0.012 Score=48.40 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4889999999999999999876
No 403
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.51 E-value=0.01 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-...|+|+|..|+|||||++.+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999998876
No 404
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.012 Score=49.38 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 405
>PRK10908 cell division protein FtsE; Provisional
Probab=95.51 E-value=0.012 Score=48.65 Aligned_cols=23 Identities=4% Similarity=-0.086 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999999975
No 406
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.49 E-value=0.11 Score=41.23 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=31.7
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIK 219 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~ 219 (261)
++.|.|.+|+|||++|...... .....+++ .-+..++. ++.+.|..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~---at~~~~d~-em~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYI---ATAEAFDD-EMAERIAR 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEE---EccCcCCH-HHHHHHHH
Confidence 3678999999999999987652 22456677 66666654 35555444
No 407
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.49 E-value=0.012 Score=49.31 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999764
No 408
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.48 E-value=0.012 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 409
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.48 E-value=0.032 Score=44.53 Aligned_cols=24 Identities=8% Similarity=-0.105 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+|+|++|+|||||...+..+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 455699999999999999998764
No 410
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.48 E-value=0.012 Score=47.72 Aligned_cols=25 Identities=8% Similarity=-0.085 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-.+++|+|+.|+|||||.+.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999999998763
No 411
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.012 Score=49.27 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|.|||||.+.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 412
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.012 Score=49.46 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37999999999999999999976
No 413
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.012 Score=47.44 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999985
No 414
>PRK14531 adenylate kinase; Provisional
Probab=95.47 E-value=0.012 Score=47.13 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|+|++|+||||+++.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998866
No 415
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.47 E-value=0.012 Score=48.95 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 416
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.47 E-value=0.012 Score=47.95 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999999975
No 417
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.47 E-value=0.011 Score=54.82 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|||.+|+||||||+.+..
T Consensus 317 GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999965
No 418
>PRK02496 adk adenylate kinase; Provisional
Probab=95.46 E-value=0.011 Score=47.26 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=18.8
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|.|+|++|+||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 419
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.46 E-value=0.014 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 420
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.46 E-value=0.013 Score=47.54 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999999998763
No 421
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.46 E-value=0.013 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 422
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.45 E-value=0.013 Score=47.94 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-.+++|+|..|+|||||.+.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999998763
No 423
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.45 E-value=0.013 Score=45.07 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|.++|.+|+|||||.+.+.++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888764
No 424
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.44 E-value=0.013 Score=48.24 Aligned_cols=23 Identities=17% Similarity=-0.024 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 425
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.44 E-value=0.014 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999976
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.43 E-value=0.013 Score=48.40 Aligned_cols=20 Identities=30% Similarity=0.204 Sum_probs=17.7
Q ss_pred EEEEEeCCCccHHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~ 184 (261)
.|+|+|-||+||||+|..+.
T Consensus 2 kIaI~GKGG~GKTtiaalll 21 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLL 21 (255)
T ss_pred eEEEecCCCccHHHHHHHHH
Confidence 69999999999999988743
No 427
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.013 Score=49.37 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 428
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.42 E-value=0.013 Score=48.42 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|+|||||.+.+..
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 429
>PRK13768 GTPase; Provisional
Probab=95.42 E-value=0.013 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=18.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.|.|++|+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 6889999999999998876643
No 430
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.013 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 431
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.42 E-value=0.013 Score=50.60 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=19.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|-++|++|+||||+|+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788899999999999999876
No 432
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.013 Score=47.82 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999998763
No 433
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.41 E-value=0.016 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 434
>PF13245 AAA_19: Part of AAA domain
Probab=95.41 E-value=0.014 Score=39.75 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=17.2
Q ss_pred eEEEEEEeCCCccHHH-HHHHHHc
Q 046049 163 LSVVAILDGIGFDMTA-FAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTt-La~~v~~ 185 (261)
-+++.|.|++|.|||+ ++..+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3577889999999994 5555544
No 435
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.41 E-value=0.013 Score=49.32 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999864
No 436
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.013 Score=49.07 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 437
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.40 E-value=0.014 Score=44.90 Aligned_cols=24 Identities=4% Similarity=-0.021 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999773
No 438
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.39 E-value=0.015 Score=44.97 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.++|.+|+|||||.+.+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988775
No 439
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.39 E-value=0.031 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+-+.++|++|+|||+||+.+.+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 345788999999999999999983
No 440
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.38 E-value=0.016 Score=52.21 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+|+|.|..|+|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998854
No 441
>PLN02165 adenylate isopentenyltransferase
Probab=95.38 E-value=0.014 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3559999999999999999988763
No 442
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.12 Score=44.97 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=28.1
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.....+..+........+-+-+.|++|+||||+|..+.+
T Consensus 7 ~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~ 46 (325)
T COG0470 7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK 46 (325)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH
Confidence 3445566666664432333499999999999999987765
No 443
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.38 E-value=0.015 Score=44.35 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=19.1
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.++|++|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998765
No 444
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.38 E-value=0.047 Score=49.90 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=53.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
+-.-++|.|..|+|||||+..+..+.. .++=.+.+++ -+... ....+++.++...-....... ...+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~a---lIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R 217 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFA---GVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEE---EecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 346789999999999999988765321 1222356666 66544 345666666654321111100 00011
Q ss_pred -CHHHHHHHHHHhc---cCCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYL---TDKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L---~~kr~LlVlDDV 258 (261)
-.....-.+.+++ +++.+||++||+
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 218 MRVALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 1122334567777 468999999997
No 445
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.38 E-value=0.015 Score=45.92 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999773
No 446
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.38 E-value=0.014 Score=45.48 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=20.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999888653
No 447
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.37 E-value=0.012 Score=45.52 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++++.|.+|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999988765
No 448
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.37 E-value=0.013 Score=47.62 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=18.9
Q ss_pred EEEEEeCCCccHHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~ 184 (261)
+++|+|+.|+|||||.+.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 449
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.014 Score=49.24 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999999975
No 450
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.36 E-value=0.014 Score=49.33 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 451
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.013 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46999999999999999999876
No 452
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.014 Score=49.42 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999975
No 453
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.35 E-value=0.013 Score=50.24 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=17.9
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.+|+|+|-||+||||++-.+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA 22 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIA 22 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 578999999999999877653
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.015 Score=46.10 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 455
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.34 E-value=0.012 Score=47.51 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+|+|-|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988763
No 456
>PRK06820 type III secretion system ATPase; Validated
Probab=95.33 E-value=0.037 Score=50.44 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-..++|+|..|+|||||++.+...
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhcc
Confidence 458899999999999999988873
No 457
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.33 E-value=0.13 Score=43.64 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=32.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS 220 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~ 220 (261)
.-.++.|.|.+|+||||++..+.... ...+=...+|+ +... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~i---S~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTI---SLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEE---Eccc--CHHHHHHHHHHH
Confidence 34688899999999999998876532 12211345677 5544 344555555443
No 458
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.33 E-value=0.014 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 459
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.33 E-value=0.014 Score=48.58 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999875
No 460
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.32 E-value=0.015 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999987
No 461
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.32 E-value=0.015 Score=47.73 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999999763
No 462
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.015 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
-.+++|+|+.|.|||||++.+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 463
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.015 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|+|||||++.+..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999863
No 464
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.31 E-value=0.015 Score=46.23 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999763
No 465
>COG4240 Predicted kinase [General function prediction only]
Probab=95.31 E-value=0.058 Score=44.57 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=23.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+.-+++|.|+-|+||||++-.+++.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~ 73 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRL 73 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHH
Confidence 45789999999999999999999884
No 466
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.31 E-value=0.015 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.063 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 467
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.31 E-value=0.014 Score=48.35 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357999999999999999999875
No 468
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.30 E-value=0.013 Score=45.37 Aligned_cols=18 Identities=22% Similarity=0.045 Sum_probs=16.9
Q ss_pred EEeCCCccHHHHHHHHHc
Q 046049 168 ILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 168 IvG~gGiGKTtLa~~v~~ 185 (261)
|+|++|+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999887
No 469
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.30 E-value=0.015 Score=48.59 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999999975
No 470
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.30 E-value=0.22 Score=44.92 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=32.3
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-..++|+++|-.++ ....||-.||.-|.||||-+-++.+
T Consensus 75 iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 75 IKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH
Confidence 6667788888886421 3578999999999999998876655
No 471
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.30 E-value=0.074 Score=42.10 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=30.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHh
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSV 221 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l 221 (261)
.-|-|+|..|+||+.+|+.+++... . ....+| .+. ..++.+.+-..++...
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~--r--~~~pfi---~vnc~~~~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSP--R--KNGPFI---SVNCAALPEELLESELFGHE 74 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCST--T--TTS-EE---EEETTTS-HHHHHHHHHEBC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhh--c--ccCCeE---EEehhhhhcchhhhhhhccc
Confidence 4455999999999999999999321 1 122334 332 2345555556665543
No 472
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.30 E-value=0.014 Score=45.08 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=18.5
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999983
No 473
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.014 Score=49.71 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46999999999999999999975
No 474
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.30 E-value=0.015 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|.|||||.+.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 475
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.015 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.|++|||..|+|||||...+-.
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhc
Confidence 46999999999999999998754
No 476
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.29 E-value=0.016 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 477
>PRK07429 phosphoribulokinase; Provisional
Probab=95.28 E-value=0.017 Score=50.69 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.-+|+|.|..|+||||+++.+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999998876
No 478
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.28 E-value=0.014 Score=49.94 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.8
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~ 184 (261)
++|+|+|-||+||||++..+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA 22 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLT 22 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 578999999999999877653
No 479
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.016 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999976
No 480
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.015 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 481
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.015 Score=48.99 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 482
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.015 Score=49.59 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999976
No 483
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.26 E-value=0.014 Score=47.86 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=18.2
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998865
No 484
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.26 E-value=0.015 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 485
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.26 E-value=0.017 Score=46.92 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=23.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 346799999999999999999888753
No 486
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.25 E-value=0.014 Score=47.90 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=17.3
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~ 184 (261)
++|+|.|-||+||||++..+.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA 21 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLS 21 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHH
Confidence 479999999999999776553
No 487
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.015 Score=48.89 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999953
No 488
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.25 E-value=0.017 Score=44.99 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=18.1
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|.++|.+|+|||||+..+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999877553
No 489
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.016 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|..|+|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999965
No 490
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.016 Score=49.19 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999864
No 491
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.015 Score=49.67 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999875
No 492
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.24 E-value=0.017 Score=47.01 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|+|.|+.|+|||||.+.+.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 493
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.24 E-value=0.016 Score=48.28 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 479999999999999999999763
No 494
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.11 Score=51.14 Aligned_cols=40 Identities=20% Similarity=-0.042 Sum_probs=29.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+..++.|..++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 20 qe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 20 QEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred cHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3445566777765542 235578999999999999998855
No 495
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.23 E-value=0.015 Score=40.59 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.3
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988766
No 496
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.015 Score=49.81 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 497
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.23 E-value=0.015 Score=49.39 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++|+|.|-||+||||++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 4788899999999998876543
No 498
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.23 E-value=0.016 Score=47.64 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999975
No 499
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.016 Score=48.15 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 500
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.23 E-value=0.016 Score=50.40 Aligned_cols=23 Identities=17% Similarity=-0.039 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
Done!