Query 046049
Match_columns 261
No_of_seqs 208 out of 1736
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 14:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2.1E-21 7.3E-26 180.2 12.8 113 145-260 133-254 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.7 5.8E-17 2E-21 162.3 13.2 113 145-260 129-247 (1249)
3 1vt4_I APAF-1 related killer D 99.7 2.2E-17 7.7E-22 159.5 8.5 112 145-260 133-255 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.6 2.8E-15 9.4E-20 140.0 10.7 111 145-260 129-247 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.4 5.4E-13 1.8E-17 98.1 6.8 64 22-85 18-86 (115)
6 1w5s_A Origin recognition comp 99.1 4.9E-10 1.7E-14 99.5 9.8 107 145-260 27-149 (412)
7 2qby_B CDC6 homolog 3, cell di 98.8 1.1E-08 3.8E-13 89.9 8.6 108 145-259 25-143 (384)
8 2v1u_A Cell division control p 98.8 2.5E-08 8.6E-13 87.4 10.2 106 145-259 24-140 (387)
9 1fnn_A CDC6P, cell division co 98.7 9.7E-08 3.3E-12 83.8 11.8 106 145-259 22-135 (389)
10 2qby_A CDC6 homolog 1, cell di 98.7 1.8E-08 6E-13 88.3 6.4 106 145-259 25-138 (386)
11 2qen_A Walker-type ATPase; unk 98.6 6.6E-08 2.3E-12 83.5 8.2 102 145-260 17-139 (350)
12 3te6_A Regulatory protein SIR3 98.5 7.3E-07 2.5E-11 76.6 10.3 106 145-258 25-141 (318)
13 2fna_A Conserved hypothetical 98.5 5.6E-07 1.9E-11 77.7 9.7 100 145-259 18-147 (357)
14 2w58_A DNAI, primosome compone 98.3 2.6E-06 8.8E-11 68.0 8.3 53 145-199 34-88 (202)
15 2chg_A Replication factor C sm 98.2 6.4E-06 2.2E-10 65.9 8.6 39 145-185 22-60 (226)
16 1jbk_A CLPB protein; beta barr 98.1 4E-06 1.4E-10 65.5 5.9 39 145-185 27-65 (195)
17 1njg_A DNA polymerase III subu 98.1 1E-05 3.5E-10 65.4 7.9 40 145-185 28-67 (250)
18 3ec2_A DNA replication protein 97.9 3.4E-05 1.1E-09 60.3 7.4 41 145-185 19-60 (180)
19 1sxj_B Activator 1 37 kDa subu 97.9 2.5E-05 8.5E-10 66.5 7.2 39 145-185 26-64 (323)
20 2p65_A Hypothetical protein PF 97.8 3.7E-05 1.3E-09 59.7 6.0 39 145-185 27-65 (187)
21 3h4m_A Proteasome-activating n 97.6 7.3E-05 2.5E-09 62.7 6.1 42 145-186 22-74 (285)
22 2cvh_A DNA repair and recombin 97.6 0.0004 1.4E-08 55.5 9.5 88 162-258 19-114 (220)
23 2vhj_A Ntpase P4, P4; non- hyd 97.5 8.1E-05 2.8E-09 63.8 5.3 67 163-258 123-191 (331)
24 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00018 6.3E-09 59.3 7.3 23 163-185 39-61 (262)
25 1iqp_A RFCS; clamp loader, ext 97.5 0.0001 3.6E-09 62.7 5.5 39 145-185 30-68 (327)
26 2z4s_A Chromosomal replication 97.5 0.00017 5.8E-09 64.7 6.6 36 149-185 117-152 (440)
27 1l8q_A Chromosomal replication 97.4 0.00028 9.6E-09 60.4 7.1 37 149-185 23-59 (324)
28 3cf0_A Transitional endoplasmi 97.4 0.00068 2.3E-08 57.5 9.3 25 162-186 48-72 (301)
29 3c8u_A Fructokinase; YP_612366 97.4 0.00016 5.4E-09 57.9 5.0 39 147-185 6-44 (208)
30 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00065 2.2E-08 58.3 9.0 24 163-186 45-68 (322)
31 3hr8_A Protein RECA; alpha and 97.4 0.00045 1.5E-08 60.2 8.0 88 161-258 59-148 (356)
32 3uk6_A RUVB-like 2; hexameric 97.3 0.0015 5.1E-08 56.6 10.9 38 149-186 56-93 (368)
33 2qgz_A Helicase loader, putati 97.3 0.00028 9.7E-09 60.2 5.6 41 145-185 133-174 (308)
34 3eie_A Vacuolar protein sortin 97.3 0.00027 9.4E-09 60.6 5.4 41 145-185 23-73 (322)
35 1rz3_A Hypothetical protein rb 97.2 0.00046 1.6E-08 54.9 6.1 41 145-185 3-44 (201)
36 3syl_A Protein CBBX; photosynt 97.2 0.00048 1.6E-08 58.3 6.0 24 162-185 66-89 (309)
37 1sxj_A Activator 1 95 kDa subu 97.2 0.00064 2.2E-08 62.2 7.2 42 145-186 44-100 (516)
38 3b9p_A CG5977-PA, isoform A; A 97.2 0.00058 2E-08 57.5 6.3 23 163-185 54-76 (297)
39 2zr9_A Protein RECA, recombina 97.1 0.0012 4.2E-08 57.3 8.1 87 162-258 60-148 (349)
40 1lv7_A FTSH; alpha/beta domain 97.1 0.00086 2.9E-08 55.3 6.8 21 165-185 47-67 (257)
41 3d8b_A Fidgetin-like protein 1 97.1 0.00047 1.6E-08 60.0 5.4 41 145-185 89-139 (357)
42 1n0w_A DNA repair protein RAD5 97.1 0.0017 5.7E-08 52.7 8.4 94 162-259 23-129 (243)
43 1d2n_A N-ethylmaleimide-sensit 97.1 0.0015 5.1E-08 54.3 8.3 35 152-186 52-87 (272)
44 1odf_A YGR205W, hypothetical 3 97.1 0.00065 2.2E-08 57.5 5.8 27 159-185 27-53 (290)
45 1v5w_A DMC1, meiotic recombina 97.1 0.0043 1.5E-07 53.7 11.1 94 161-258 120-228 (343)
46 1xp8_A RECA protein, recombina 97.1 0.0016 5.4E-08 56.9 8.3 87 162-258 73-161 (366)
47 3lw7_A Adenylate kinase relate 97.0 0.00029 9.8E-09 54.1 2.9 20 164-183 2-21 (179)
48 2z43_A DNA repair and recombin 97.0 0.0017 5.8E-08 55.7 7.8 93 162-258 106-212 (324)
49 3pvs_A Replication-associated 97.0 0.00055 1.9E-08 61.5 4.8 34 150-185 39-72 (447)
50 1u94_A RECA protein, recombina 97.0 0.0013 4.3E-08 57.3 7.0 87 162-258 62-150 (356)
51 3io5_A Recombination and repai 97.0 0.0033 1.1E-07 53.7 9.1 84 165-258 30-120 (333)
52 1zp6_A Hypothetical protein AT 97.0 0.00047 1.6E-08 54.0 3.6 24 163-186 9-32 (191)
53 2i1q_A DNA repair and recombin 97.0 0.0031 1.1E-07 53.9 8.9 93 162-258 97-213 (322)
54 1jr3_A DNA polymerase III subu 97.0 0.0033 1.1E-07 54.4 9.1 40 145-185 21-60 (373)
55 2qp9_X Vacuolar protein sortin 96.9 0.00069 2.4E-08 59.0 4.5 22 164-185 85-106 (355)
56 3vfd_A Spastin; ATPase, microt 96.9 0.0014 4.8E-08 57.6 6.2 41 145-185 120-170 (389)
57 3bos_A Putative DNA replicatio 96.9 0.0011 3.6E-08 53.6 5.1 38 146-185 37-74 (242)
58 2px0_A Flagellar biosynthesis 96.8 0.0033 1.1E-07 53.2 8.0 24 162-185 104-127 (296)
59 1kgd_A CASK, peripheral plasma 96.8 0.00059 2E-08 53.3 3.0 23 163-185 5-27 (180)
60 4b4t_K 26S protease regulatory 96.8 0.0022 7.5E-08 57.2 7.0 41 145-185 177-228 (428)
61 2chq_A Replication factor C sm 96.8 0.0011 3.8E-08 56.0 5.0 39 145-185 22-60 (319)
62 3kb2_A SPBC2 prophage-derived 96.8 0.00058 2E-08 52.4 2.9 22 164-185 2-23 (173)
63 4b4t_H 26S protease regulatory 96.8 0.0024 8.1E-08 57.3 7.2 41 145-185 214-265 (467)
64 4b4t_M 26S protease regulatory 96.8 0.0016 5.5E-08 58.1 6.1 41 145-185 186-237 (434)
65 3n70_A Transport activator; si 96.8 0.00072 2.5E-08 50.8 3.2 22 165-186 26-47 (145)
66 4gp7_A Metallophosphoesterase; 96.8 0.00068 2.3E-08 52.5 3.1 23 163-185 9-31 (171)
67 1qhx_A CPT, protein (chloramph 96.8 0.00058 2E-08 52.8 2.7 22 164-185 4-25 (178)
68 4b4t_L 26S protease subunit RP 96.8 0.0026 8.9E-08 56.8 7.2 24 162-185 214-237 (437)
69 1ly1_A Polynucleotide kinase; 96.8 0.00078 2.7E-08 52.0 3.3 22 164-185 3-24 (181)
70 3tr0_A Guanylate kinase, GMP k 96.8 0.00074 2.5E-08 53.4 3.2 23 163-185 7-29 (205)
71 3uie_A Adenylyl-sulfate kinase 96.8 0.00085 2.9E-08 53.2 3.6 24 162-185 24-47 (200)
72 3vaa_A Shikimate kinase, SK; s 96.8 0.0007 2.4E-08 53.7 3.0 23 163-185 25-47 (199)
73 1kag_A SKI, shikimate kinase I 96.8 0.0006 2E-08 52.5 2.5 22 164-185 5-26 (173)
74 3asz_A Uridine kinase; cytidin 96.7 0.00095 3.3E-08 53.2 3.7 24 162-185 5-28 (211)
75 4b4t_J 26S protease regulatory 96.7 0.0021 7.1E-08 56.7 6.1 23 163-185 182-204 (405)
76 3u61_B DNA polymerase accessor 96.7 0.0084 2.9E-07 51.0 9.8 40 145-185 31-70 (324)
77 1pzn_A RAD51, DNA repair and r 96.7 0.0064 2.2E-07 52.7 9.0 94 161-258 129-240 (349)
78 2zan_A Vacuolar protein sortin 96.7 0.0024 8.2E-08 57.3 6.5 42 145-186 139-190 (444)
79 3hu3_A Transitional endoplasmi 96.7 0.0012 4.1E-08 60.0 4.5 23 163-185 238-260 (489)
80 2bdt_A BH3686; alpha-beta prot 96.7 0.00093 3.2E-08 52.3 3.4 22 164-185 3-24 (189)
81 2xxa_A Signal recognition part 96.7 0.0077 2.6E-07 53.8 9.7 40 145-184 75-121 (433)
82 1j8m_F SRP54, signal recogniti 96.7 0.0082 2.8E-07 50.8 9.3 23 163-185 98-120 (297)
83 1ye8_A Protein THEP1, hypothet 96.7 0.00088 3E-08 52.4 3.0 21 165-185 2-22 (178)
84 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.7E-08 51.2 3.5 23 163-185 8-30 (175)
85 1nks_A Adenylate kinase; therm 96.7 0.0011 3.6E-08 51.8 3.4 22 164-185 2-23 (194)
86 2qt1_A Nicotinamide riboside k 96.6 0.0014 4.7E-08 52.2 3.9 25 161-185 19-43 (207)
87 1gvn_B Zeta; postsegregational 96.6 0.0024 8.1E-08 53.9 5.6 41 145-185 12-55 (287)
88 4eun_A Thermoresistant glucoki 96.6 0.0011 3.7E-08 52.6 3.2 24 162-185 28-51 (200)
89 3a00_A Guanylate kinase, GMP k 96.6 0.0008 2.7E-08 52.8 2.4 22 164-185 2-23 (186)
90 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.5E-08 51.4 3.7 23 163-185 5-27 (193)
91 3e70_C DPA, signal recognition 96.6 0.0022 7.4E-08 55.2 5.2 25 161-185 127-151 (328)
92 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.9E-08 52.4 3.2 23 163-185 6-28 (207)
93 1uf9_A TT1252 protein; P-loop, 96.6 0.0014 4.8E-08 51.7 3.7 25 161-185 6-30 (203)
94 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.6E-08 51.7 2.9 23 163-185 5-27 (185)
95 2ce7_A Cell division protein F 96.6 0.0018 6.3E-08 58.5 4.9 21 165-185 51-71 (476)
96 2jaq_A Deoxyguanosine kinase; 96.6 0.001 3.5E-08 52.4 2.9 21 165-185 2-22 (205)
97 1cke_A CK, MSSA, protein (cyti 96.6 0.0011 3.8E-08 53.3 3.1 22 164-185 6-27 (227)
98 3tau_A Guanylate kinase, GMP k 96.6 0.0012 4.3E-08 52.7 3.3 23 163-185 8-30 (208)
99 3cf2_A TER ATPase, transitiona 96.6 0.004 1.4E-07 59.7 7.2 25 162-186 237-261 (806)
100 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4.2E-08 52.2 3.2 22 164-185 2-23 (204)
101 2p5t_B PEZT; postsegregational 96.6 0.0023 7.9E-08 52.8 4.9 41 145-185 11-54 (253)
102 1qvr_A CLPB protein; coiled co 96.6 0.0039 1.3E-07 60.5 7.2 39 145-185 175-213 (854)
103 1jjv_A Dephospho-COA kinase; P 96.6 0.0013 4.6E-08 52.2 3.4 22 164-185 3-24 (206)
104 1znw_A Guanylate kinase, GMP k 96.6 0.0013 4.5E-08 52.4 3.3 23 163-185 20-42 (207)
105 3t61_A Gluconokinase; PSI-biol 96.5 0.001 3.4E-08 52.8 2.5 23 163-185 18-40 (202)
106 1lvg_A Guanylate kinase, GMP k 96.5 0.001 3.4E-08 52.9 2.5 22 164-185 5-26 (198)
107 3aez_A Pantothenate kinase; tr 96.5 0.0015 5.3E-08 55.8 3.8 25 161-185 88-112 (312)
108 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 51.3 3.1 22 164-185 4-25 (192)
109 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0088 3E-07 57.2 9.3 39 145-185 191-229 (758)
110 2bbw_A Adenylate kinase 4, AK4 96.5 0.0015 5.1E-08 53.6 3.2 22 163-184 27-48 (246)
111 2kjq_A DNAA-related protein; s 96.5 0.0011 3.7E-08 50.3 2.1 23 163-185 36-58 (149)
112 3lda_A DNA repair protein RAD5 96.5 0.011 3.9E-07 52.1 9.0 58 162-223 177-238 (400)
113 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.8E-08 50.7 3.3 23 163-185 3-25 (196)
114 1htw_A HI0065; nucleotide-bind 96.4 0.002 6.7E-08 49.4 3.5 24 162-185 32-55 (158)
115 1ukz_A Uridylate kinase; trans 96.4 0.0019 6.5E-08 51.1 3.6 24 162-185 14-37 (203)
116 2qor_A Guanylate kinase; phosp 96.4 0.0012 4.2E-08 52.4 2.4 24 162-185 11-34 (204)
117 2c95_A Adenylate kinase 1; tra 96.4 0.0017 5.7E-08 50.9 3.2 23 163-185 9-31 (196)
118 2jeo_A Uridine-cytidine kinase 96.4 0.002 6.8E-08 52.8 3.7 24 162-185 24-47 (245)
119 2ze6_A Isopentenyl transferase 96.4 0.0017 5.8E-08 53.7 3.3 22 164-185 2-23 (253)
120 1zuh_A Shikimate kinase; alpha 96.4 0.0016 5.5E-08 49.9 2.9 24 162-185 6-29 (168)
121 3iij_A Coilin-interacting nucl 96.4 0.0014 4.8E-08 50.9 2.5 23 163-185 11-33 (180)
122 3cm0_A Adenylate kinase; ATP-b 96.4 0.002 6.7E-08 50.1 3.3 23 163-185 4-26 (186)
123 1z6g_A Guanylate kinase; struc 96.4 0.0015 5.1E-08 52.7 2.7 23 163-185 23-45 (218)
124 1y63_A LMAJ004144AAA protein; 96.4 0.0019 6.4E-08 50.5 3.2 24 162-185 9-32 (184)
125 2yvu_A Probable adenylyl-sulfa 96.4 0.002 6.8E-08 50.3 3.3 24 162-185 12-35 (186)
126 3b9q_A Chloroplast SRP recepto 96.4 0.0041 1.4E-07 52.9 5.5 41 145-185 73-122 (302)
127 3pfi_A Holliday junction ATP-d 96.4 0.0019 6.7E-08 55.3 3.5 41 145-185 34-77 (338)
128 4e22_A Cytidylate kinase; P-lo 96.4 0.0018 6.1E-08 53.5 3.1 22 163-184 27-48 (252)
129 1in4_A RUVB, holliday junction 96.4 0.0022 7.6E-08 55.2 3.8 24 162-185 50-73 (334)
130 1qf9_A UMP/CMP kinase, protein 96.4 0.0022 7.5E-08 49.9 3.4 23 163-185 6-28 (194)
131 2plr_A DTMP kinase, probable t 96.3 0.0021 7.2E-08 50.9 3.3 23 163-185 4-26 (213)
132 3co5_A Putative two-component 96.3 0.0008 2.7E-08 50.5 0.7 22 165-186 29-50 (143)
133 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0022 7.5E-08 53.2 3.4 23 163-185 4-26 (260)
134 1via_A Shikimate kinase; struc 96.3 0.0019 6.5E-08 49.9 2.9 21 165-185 6-26 (175)
135 1ex7_A Guanylate kinase; subst 96.3 0.0014 4.9E-08 51.6 2.1 22 164-185 2-23 (186)
136 2iyv_A Shikimate kinase, SK; t 96.3 0.0014 4.9E-08 51.0 2.1 22 164-185 3-24 (184)
137 3tqc_A Pantothenate kinase; bi 96.3 0.0057 2E-07 52.4 6.0 25 161-185 90-114 (321)
138 3kl4_A SRP54, signal recogniti 96.3 0.014 4.8E-07 52.0 8.8 41 145-185 72-119 (433)
139 2bwj_A Adenylate kinase 5; pho 96.3 0.0022 7.4E-08 50.4 3.2 23 163-185 12-34 (199)
140 4a74_A DNA repair and recombin 96.3 0.0025 8.5E-08 51.2 3.6 24 162-185 24-47 (231)
141 1ypw_A Transitional endoplasmi 96.3 0.0035 1.2E-07 60.4 5.2 23 163-185 238-260 (806)
142 1fx0_B ATP synthase beta chain 96.3 0.0092 3.1E-07 53.8 7.5 102 152-258 155-275 (498)
143 3t15_A Ribulose bisphosphate c 96.3 0.0018 6.3E-08 54.7 2.8 24 162-185 35-58 (293)
144 3tif_A Uncharacterized ABC tra 96.3 0.0022 7.4E-08 52.5 3.1 23 163-185 31-53 (235)
145 2pcj_A ABC transporter, lipopr 96.3 0.0022 7.5E-08 52.0 3.1 23 163-185 30-52 (224)
146 1sxj_D Activator 1 41 kDa subu 96.3 0.0037 1.3E-07 53.6 4.7 39 145-185 42-80 (353)
147 2b8t_A Thymidine kinase; deoxy 96.3 0.0012 3.9E-08 53.7 1.4 24 162-185 11-34 (223)
148 2pbr_A DTMP kinase, thymidylat 96.3 0.0021 7.2E-08 50.2 2.9 21 165-185 2-22 (195)
149 1a5t_A Delta prime, HOLB; zinc 96.3 0.022 7.7E-07 48.8 9.7 40 145-185 7-46 (334)
150 4b4t_I 26S protease regulatory 96.3 0.0074 2.5E-07 53.6 6.6 41 145-185 187-238 (437)
151 1sq5_A Pantothenate kinase; P- 96.3 0.0061 2.1E-07 51.8 6.0 25 161-185 78-102 (308)
152 3p32_A Probable GTPase RV1496/ 96.3 0.0049 1.7E-07 53.5 5.5 37 149-185 65-101 (355)
153 2onk_A Molybdate/tungstate ABC 96.3 0.0023 7.9E-08 52.5 3.2 22 164-185 25-46 (240)
154 3tlx_A Adenylate kinase 2; str 96.3 0.0043 1.5E-07 50.9 4.8 24 162-185 28-51 (243)
155 1s96_A Guanylate kinase, GMP k 96.3 0.0024 8.3E-08 51.6 3.2 24 162-185 15-38 (219)
156 2yhs_A FTSY, cell division pro 96.2 0.0053 1.8E-07 55.6 5.7 41 145-185 268-315 (503)
157 1gtv_A TMK, thymidylate kinase 96.2 0.0012 4.3E-08 52.5 1.4 21 165-185 2-22 (214)
158 2ehv_A Hypothetical protein PH 96.2 0.0024 8.4E-08 51.9 3.2 23 162-184 29-51 (251)
159 2og2_A Putative signal recogni 96.2 0.0054 1.9E-07 53.4 5.6 41 145-185 130-179 (359)
160 2gno_A DNA polymerase III, gam 96.2 0.02 6.9E-07 48.6 9.0 35 149-185 6-40 (305)
161 1rj9_A FTSY, signal recognitio 96.2 0.0023 8E-08 54.4 3.2 24 162-185 101-124 (304)
162 3ney_A 55 kDa erythrocyte memb 96.2 0.0024 8.2E-08 50.8 3.0 24 162-185 18-41 (197)
163 2pt5_A Shikimate kinase, SK; a 96.2 0.0022 7.7E-08 48.9 2.8 21 165-185 2-22 (168)
164 2ffh_A Protein (FFH); SRP54, s 96.2 0.015 5.2E-07 51.7 8.5 24 162-185 97-120 (425)
165 2hf9_A Probable hydrogenase ni 96.2 0.0058 2E-07 48.9 5.4 38 147-186 24-61 (226)
166 1e6c_A Shikimate kinase; phosp 96.2 0.0018 6.3E-08 49.6 2.3 22 164-185 3-24 (173)
167 1uj2_A Uridine-cytidine kinase 96.2 0.0028 9.5E-08 52.2 3.5 24 162-185 21-44 (252)
168 1xjc_A MOBB protein homolog; s 96.2 0.0025 8.4E-08 49.5 2.9 24 162-185 3-26 (169)
169 2grj_A Dephospho-COA kinase; T 96.2 0.0033 1.1E-07 49.7 3.7 25 161-185 10-34 (192)
170 1zu4_A FTSY; GTPase, signal re 96.2 0.0071 2.4E-07 51.8 6.0 24 162-185 104-127 (320)
171 2i3b_A HCR-ntpase, human cance 96.2 0.0022 7.5E-08 50.7 2.7 21 165-185 3-23 (189)
172 2f1r_A Molybdopterin-guanine d 96.2 0.0017 5.9E-08 50.4 2.0 22 164-185 3-24 (171)
173 2cdn_A Adenylate kinase; phosp 96.2 0.0026 8.8E-08 50.3 3.1 24 162-185 19-42 (201)
174 1nn5_A Similar to deoxythymidy 96.2 0.0028 9.7E-08 50.3 3.3 23 163-185 9-31 (215)
175 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0094 3.2E-07 53.6 6.9 91 164-258 152-254 (473)
176 2f6r_A COA synthase, bifunctio 96.2 0.0033 1.1E-07 52.7 3.8 24 162-185 74-97 (281)
177 3umf_A Adenylate kinase; rossm 96.2 0.0032 1.1E-07 50.8 3.6 25 161-185 27-51 (217)
178 2vli_A Antibiotic resistance p 96.2 0.0018 6.2E-08 50.2 2.0 23 163-185 5-27 (183)
179 1vma_A Cell division protein F 96.2 0.0061 2.1E-07 51.9 5.4 41 145-185 80-126 (306)
180 1ixz_A ATP-dependent metallopr 96.2 0.0025 8.5E-08 52.4 2.8 21 166-186 52-72 (254)
181 3dm5_A SRP54, signal recogniti 96.1 0.019 6.6E-07 51.3 8.7 41 145-185 76-122 (443)
182 3b85_A Phosphate starvation-in 96.1 0.0024 8.1E-08 51.3 2.6 22 164-185 23-44 (208)
183 2x8a_A Nuclear valosin-contain 96.1 0.0025 8.4E-08 53.4 2.8 20 166-185 47-66 (274)
184 1vht_A Dephospho-COA kinase; s 96.1 0.0035 1.2E-07 50.2 3.6 23 163-185 4-26 (218)
185 2cbz_A Multidrug resistance-as 96.1 0.0028 9.5E-08 51.9 3.0 23 163-185 31-53 (237)
186 3lnc_A Guanylate kinase, GMP k 96.1 0.0019 6.5E-08 52.3 2.0 22 163-184 27-48 (231)
187 1b0u_A Histidine permease; ABC 96.1 0.0027 9.3E-08 52.8 3.0 23 163-185 32-54 (262)
188 2wsm_A Hydrogenase expression/ 96.1 0.0053 1.8E-07 49.0 4.7 37 147-185 16-52 (221)
189 2wwf_A Thymidilate kinase, put 96.1 0.0031 1.1E-07 50.0 3.2 23 163-185 10-32 (212)
190 2z0h_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 49.4 3.1 21 165-185 2-22 (197)
191 3ice_A Transcription terminati 96.1 0.0013 4.6E-08 57.6 1.0 34 151-185 163-196 (422)
192 3gfo_A Cobalt import ATP-bindi 96.1 0.0029 1E-07 53.0 3.1 23 163-185 34-56 (275)
193 2pez_A Bifunctional 3'-phospho 96.1 0.0035 1.2E-07 48.6 3.3 23 163-185 5-27 (179)
194 1ji0_A ABC transporter; ATP bi 96.1 0.003 1E-07 51.8 3.0 23 163-185 32-54 (240)
195 3fwy_A Light-independent proto 96.1 0.0034 1.2E-07 53.6 3.5 23 161-183 46-68 (314)
196 1g6h_A High-affinity branched- 96.1 0.003 1E-07 52.3 3.0 23 163-185 33-55 (257)
197 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0033 1.1E-07 51.9 3.3 23 163-185 29-51 (250)
198 1m7g_A Adenylylsulfate kinase; 96.1 0.0039 1.3E-07 49.8 3.6 23 163-185 25-47 (211)
199 1mv5_A LMRA, multidrug resista 96.1 0.0034 1.2E-07 51.5 3.2 23 163-185 28-50 (243)
200 1zd8_A GTP:AMP phosphotransfer 96.1 0.0032 1.1E-07 50.8 3.0 23 163-185 7-29 (227)
201 4g1u_C Hemin import ATP-bindin 96.1 0.0032 1.1E-07 52.5 3.1 23 163-185 37-59 (266)
202 2pze_A Cystic fibrosis transme 96.0 0.0033 1.1E-07 51.2 3.0 23 163-185 34-56 (229)
203 2olj_A Amino acid ABC transpor 96.0 0.0032 1.1E-07 52.4 3.0 23 163-185 50-72 (263)
204 1aky_A Adenylate kinase; ATP:A 96.0 0.0033 1.1E-07 50.4 3.0 23 163-185 4-26 (220)
205 2ck3_D ATP synthase subunit be 96.0 0.0068 2.3E-07 54.5 5.2 102 152-258 143-262 (482)
206 3pxg_A Negative regulator of g 96.0 0.0051 1.7E-07 55.5 4.5 39 145-185 185-223 (468)
207 2ff7_A Alpha-hemolysin translo 96.0 0.0034 1.2E-07 51.7 3.0 23 163-185 35-57 (247)
208 2zu0_C Probable ATP-dependent 96.0 0.0036 1.2E-07 52.2 3.2 23 163-185 46-68 (267)
209 2v54_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 49.3 3.1 23 163-185 4-26 (204)
210 1sgw_A Putative ABC transporte 96.0 0.0029 9.8E-08 51.0 2.4 22 164-185 36-57 (214)
211 3fb4_A Adenylate kinase; psych 96.0 0.0038 1.3E-07 49.8 3.1 21 165-185 2-22 (216)
212 1vpl_A ABC transporter, ATP-bi 96.0 0.0036 1.2E-07 51.9 3.0 23 163-185 41-63 (256)
213 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0091 3.1E-07 51.8 5.6 40 146-185 5-46 (359)
214 1hqc_A RUVB; extended AAA-ATPa 96.0 0.005 1.7E-07 52.2 4.0 41 145-185 17-60 (324)
215 2ixe_A Antigen peptide transpo 96.0 0.0037 1.3E-07 52.3 3.0 23 163-185 45-67 (271)
216 1zak_A Adenylate kinase; ATP:A 96.0 0.0033 1.1E-07 50.6 2.7 23 163-185 5-27 (222)
217 2ghi_A Transport protein; mult 96.0 0.0037 1.3E-07 51.9 3.0 23 163-185 46-68 (260)
218 1sxj_C Activator 1 40 kDa subu 95.9 0.0064 2.2E-07 52.3 4.6 39 145-185 30-68 (340)
219 2bjv_A PSP operon transcriptio 95.9 0.0043 1.5E-07 51.2 3.3 23 164-186 30-52 (265)
220 1sxj_E Activator 1 40 kDa subu 95.9 0.0038 1.3E-07 53.7 3.1 40 145-185 19-58 (354)
221 1iy2_A ATP-dependent metallopr 95.9 0.0036 1.2E-07 52.2 2.8 21 166-186 76-96 (278)
222 3hws_A ATP-dependent CLP prote 95.9 0.006 2.1E-07 52.9 4.4 24 162-185 50-73 (363)
223 3ake_A Cytidylate kinase; CMP 95.9 0.0043 1.5E-07 49.0 3.1 21 165-185 4-24 (208)
224 2qi9_C Vitamin B12 import ATP- 95.9 0.004 1.4E-07 51.4 3.0 23 163-185 26-48 (249)
225 2ihy_A ABC transporter, ATP-bi 95.9 0.004 1.4E-07 52.3 3.0 23 163-185 47-69 (279)
226 2yz2_A Putative ABC transporte 95.9 0.004 1.4E-07 51.9 3.0 23 163-185 33-55 (266)
227 3dl0_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 49.5 3.1 21 165-185 2-22 (216)
228 2nq2_C Hypothetical ABC transp 95.9 0.0042 1.4E-07 51.4 3.0 23 163-185 31-53 (253)
229 1tue_A Replication protein E1; 95.9 0.0082 2.8E-07 48.0 4.5 40 145-185 41-80 (212)
230 3nwj_A ATSK2; P loop, shikimat 95.9 0.0037 1.3E-07 51.6 2.5 22 164-185 49-70 (250)
231 2eyu_A Twitching motility prot 95.8 0.0054 1.9E-07 50.9 3.5 24 162-185 24-47 (261)
232 2c9o_A RUVB-like 1; hexameric 95.8 0.0089 3E-07 53.7 5.1 37 149-185 49-85 (456)
233 1np6_A Molybdopterin-guanine d 95.8 0.0048 1.7E-07 48.0 2.9 23 163-185 6-28 (174)
234 1ofh_A ATP-dependent HSL prote 95.8 0.0046 1.6E-07 51.9 3.0 23 163-185 50-72 (310)
235 3r20_A Cytidylate kinase; stru 95.8 0.0052 1.8E-07 50.2 3.1 23 163-185 9-31 (233)
236 3be4_A Adenylate kinase; malar 95.8 0.0047 1.6E-07 49.5 2.8 23 163-185 5-27 (217)
237 2v9p_A Replication protein E1; 95.7 0.0055 1.9E-07 52.1 3.3 24 162-185 125-148 (305)
238 4a1f_A DNAB helicase, replicat 95.7 0.033 1.1E-06 48.0 8.1 52 162-220 45-96 (338)
239 2vp4_A Deoxynucleoside kinase; 95.7 0.005 1.7E-07 49.9 2.8 24 162-185 19-42 (230)
240 1svm_A Large T antigen; AAA+ f 95.7 0.012 4.1E-07 51.5 5.3 25 161-185 167-191 (377)
241 3d3q_A TRNA delta(2)-isopenten 95.7 0.0061 2.1E-07 52.6 3.3 22 164-185 8-29 (340)
242 1oix_A RAS-related protein RAB 95.7 0.0063 2.2E-07 47.6 3.2 25 162-186 28-52 (191)
243 4eaq_A DTMP kinase, thymidylat 95.7 0.011 3.9E-07 47.9 4.8 25 162-186 25-49 (229)
244 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0063 2.2E-07 48.7 3.3 23 163-185 23-45 (235)
245 1e4v_A Adenylate kinase; trans 95.7 0.0063 2.1E-07 48.6 3.2 21 165-185 2-22 (214)
246 2pjz_A Hypothetical protein ST 95.7 0.0058 2E-07 50.9 3.0 22 164-185 31-52 (263)
247 1fzq_A ADP-ribosylation factor 95.7 0.0097 3.3E-07 46.0 4.2 31 156-186 9-39 (181)
248 1q3t_A Cytidylate kinase; nucl 95.7 0.0063 2.2E-07 49.4 3.2 25 161-185 14-38 (236)
249 4fcw_A Chaperone protein CLPB; 95.6 0.0068 2.3E-07 51.0 3.4 23 163-185 47-69 (311)
250 3hjn_A DTMP kinase, thymidylat 95.6 0.01 3.5E-07 47.0 4.3 86 165-256 2-88 (197)
251 3sop_A Neuronal-specific septi 95.6 0.0069 2.4E-07 50.6 3.3 21 165-185 4-24 (270)
252 2xb4_A Adenylate kinase; ATP-b 95.6 0.0064 2.2E-07 49.0 3.1 21 165-185 2-22 (223)
253 1tq4_A IIGP1, interferon-induc 95.6 0.0077 2.6E-07 53.4 3.8 35 151-185 57-91 (413)
254 3nh6_A ATP-binding cassette SU 95.6 0.0048 1.6E-07 52.5 2.4 24 162-185 79-102 (306)
255 3fvq_A Fe(3+) IONS import ATP- 95.6 0.0068 2.3E-07 52.7 3.4 23 163-185 30-52 (359)
256 2bbs_A Cystic fibrosis transme 95.6 0.0066 2.2E-07 51.3 3.1 23 163-185 64-86 (290)
257 3sr0_A Adenylate kinase; phosp 95.6 0.0064 2.2E-07 48.6 2.9 21 165-185 2-22 (206)
258 2wji_A Ferrous iron transport 95.5 0.013 4.4E-07 44.5 4.4 23 164-186 4-26 (165)
259 1ltq_A Polynucleotide kinase; 95.5 0.0074 2.5E-07 50.8 3.3 22 164-185 3-24 (301)
260 2qm8_A GTPase/ATPase; G protei 95.5 0.014 4.9E-07 50.2 5.1 33 152-184 44-76 (337)
261 2f9l_A RAB11B, member RAS onco 95.5 0.0071 2.4E-07 47.5 2.8 24 163-186 5-28 (199)
262 3tui_C Methionine import ATP-b 95.5 0.0078 2.7E-07 52.4 3.2 23 163-185 54-76 (366)
263 1ak2_A Adenylate kinase isoenz 95.5 0.0081 2.8E-07 48.7 3.2 23 163-185 16-38 (233)
264 2zej_A Dardarin, leucine-rich 95.5 0.0073 2.5E-07 46.8 2.8 22 165-186 4-25 (184)
265 1z47_A CYSA, putative ABC-tran 95.4 0.0081 2.8E-07 52.2 3.3 23 163-185 41-63 (355)
266 1nij_A Hypothetical protein YJ 95.4 0.0088 3E-07 51.1 3.4 25 162-186 3-27 (318)
267 3crm_A TRNA delta(2)-isopenten 95.4 0.0087 3E-07 51.2 3.3 22 164-185 6-27 (323)
268 3a8t_A Adenylate isopentenyltr 95.4 0.011 3.7E-07 50.9 3.8 23 163-185 40-62 (339)
269 1a7j_A Phosphoribulokinase; tr 95.4 0.0041 1.4E-07 52.5 1.2 24 162-185 4-27 (290)
270 1yrb_A ATP(GTP)binding protein 95.4 0.0098 3.4E-07 48.8 3.5 23 162-184 13-35 (262)
271 1cr0_A DNA primase/helicase; R 95.4 0.0092 3.1E-07 50.1 3.4 24 162-185 34-57 (296)
272 1nlf_A Regulatory protein REPA 95.4 0.0093 3.2E-07 49.7 3.4 23 163-185 30-52 (279)
273 2yyz_A Sugar ABC transporter, 95.4 0.0088 3E-07 52.0 3.3 23 163-185 29-51 (359)
274 2dyk_A GTP-binding protein; GT 95.4 0.011 3.9E-07 44.1 3.6 23 164-186 2-24 (161)
275 3rlf_A Maltose/maltodextrin im 95.4 0.0088 3E-07 52.4 3.2 23 163-185 29-51 (381)
276 2v3c_C SRP54, signal recogniti 95.4 0.012 4E-07 52.6 4.0 41 145-185 74-121 (432)
277 3kta_A Chromosome segregation 95.3 0.01 3.6E-07 45.8 3.3 21 164-184 27-47 (182)
278 2it1_A 362AA long hypothetical 95.3 0.009 3.1E-07 52.0 3.2 23 163-185 29-51 (362)
279 2p67_A LAO/AO transport system 95.3 0.022 7.5E-07 49.1 5.6 34 151-184 44-77 (341)
280 2ce2_X GTPase HRAS; signaling 95.3 0.011 3.6E-07 44.2 3.2 22 165-186 5-26 (166)
281 1g29_1 MALK, maltose transport 95.3 0.0094 3.2E-07 52.1 3.3 23 163-185 29-51 (372)
282 3cmu_A Protein RECA, recombina 95.3 0.043 1.5E-06 57.5 8.4 87 162-258 1426-1514(2050)
283 3exa_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 50.6 3.3 23 163-185 3-25 (322)
284 2j37_W Signal recognition part 95.3 0.021 7.2E-07 51.9 5.6 40 145-184 76-122 (504)
285 1ojl_A Transcriptional regulat 95.3 0.0091 3.1E-07 50.6 3.0 23 164-186 26-48 (304)
286 1v43_A Sugar-binding transport 95.3 0.0097 3.3E-07 52.0 3.2 23 163-185 37-59 (372)
287 2wjg_A FEOB, ferrous iron tran 95.3 0.013 4.6E-07 45.1 3.8 24 163-186 7-30 (188)
288 3pxi_A Negative regulator of g 95.3 0.014 4.6E-07 55.9 4.5 39 145-185 185-223 (758)
289 3d31_A Sulfate/molybdate ABC t 95.3 0.0081 2.8E-07 52.1 2.7 23 163-185 26-48 (348)
290 2r62_A Cell division protease 95.3 0.0041 1.4E-07 51.4 0.8 20 166-185 47-66 (268)
291 1lw7_A Transcriptional regulat 95.2 0.01 3.5E-07 51.6 3.3 23 163-185 170-192 (365)
292 1ls1_A Signal recognition part 95.2 0.012 4E-07 49.8 3.6 23 163-185 98-120 (295)
293 2ocp_A DGK, deoxyguanosine kin 95.2 0.012 4.2E-07 47.8 3.5 23 163-185 2-24 (241)
294 3zvl_A Bifunctional polynucleo 95.2 0.0098 3.3E-07 52.8 3.1 25 161-185 256-280 (416)
295 1z2a_A RAS-related protein RAB 95.2 0.011 3.8E-07 44.4 3.1 24 163-186 5-28 (168)
296 1oxx_K GLCV, glucose, ABC tran 95.2 0.0073 2.5E-07 52.4 2.1 23 163-185 31-53 (353)
297 2nzj_A GTP-binding protein REM 95.1 0.013 4.3E-07 44.5 3.2 24 163-186 4-27 (175)
298 1u8z_A RAS-related protein RAL 95.1 0.013 4.4E-07 43.9 3.1 24 163-186 4-27 (168)
299 3gd7_A Fusion complex of cysti 95.1 0.012 4.3E-07 51.7 3.4 23 163-185 47-69 (390)
300 1u0j_A DNA replication protein 95.1 0.023 8E-07 47.2 4.8 39 147-185 88-126 (267)
301 2lkc_A Translation initiation 95.1 0.02 6.9E-07 43.5 4.2 25 162-186 7-31 (178)
302 3def_A T7I23.11 protein; chlor 95.1 0.041 1.4E-06 45.3 6.3 41 147-187 20-60 (262)
303 3bgw_A DNAB-like replicative h 95.1 0.11 3.7E-06 46.5 9.5 52 161-219 195-246 (444)
304 1h65_A Chloroplast outer envel 95.1 0.041 1.4E-06 45.5 6.3 43 145-187 21-63 (270)
305 1z08_A RAS-related protein RAB 95.0 0.017 5.9E-07 43.5 3.7 25 162-186 5-29 (170)
306 3foz_A TRNA delta(2)-isopenten 95.0 0.014 4.6E-07 49.7 3.3 24 162-185 9-32 (316)
307 3bh0_A DNAB-like replicative h 95.0 0.046 1.6E-06 46.5 6.7 53 161-220 66-118 (315)
308 3con_A GTPase NRAS; structural 95.0 0.014 4.6E-07 45.2 3.1 24 163-186 21-44 (190)
309 3upu_A ATP-dependent DNA helic 95.0 0.035 1.2E-06 49.8 6.2 37 146-185 31-67 (459)
310 3l0o_A Transcription terminati 95.0 0.11 3.8E-06 45.5 9.1 35 150-185 163-197 (427)
311 2erx_A GTP-binding protein DI- 95.0 0.015 5.2E-07 43.8 3.3 23 164-186 4-26 (172)
312 2ged_A SR-beta, signal recogni 95.0 0.014 4.7E-07 45.3 3.1 26 161-186 46-71 (193)
313 1um8_A ATP-dependent CLP prote 95.0 0.011 3.7E-07 51.5 2.6 23 163-185 72-94 (376)
314 1c1y_A RAS-related protein RAP 95.0 0.018 6E-07 43.2 3.5 23 164-186 4-26 (167)
315 1ek0_A Protein (GTP-binding pr 95.0 0.015 5.1E-07 43.7 3.1 23 164-186 4-26 (170)
316 3q85_A GTP-binding protein REM 94.9 0.02 6.8E-07 43.1 3.8 23 163-185 2-24 (169)
317 3q72_A GTP-binding protein RAD 94.9 0.014 4.8E-07 43.9 2.9 21 165-185 4-24 (166)
318 2ewv_A Twitching motility prot 94.9 0.014 4.9E-07 50.9 3.3 24 162-185 135-158 (372)
319 1f6b_A SAR1; gtpases, N-termin 94.9 0.025 8.5E-07 44.3 4.5 24 163-186 25-48 (198)
320 2gj8_A MNME, tRNA modification 94.9 0.016 5.3E-07 44.4 3.2 23 164-186 5-27 (172)
321 1z0j_A RAB-22, RAS-related pro 94.9 0.015 5.2E-07 43.7 3.1 24 163-186 6-29 (170)
322 1kao_A RAP2A; GTP-binding prot 94.9 0.015 5.2E-07 43.4 3.1 23 164-186 4-26 (167)
323 4edh_A DTMP kinase, thymidylat 94.9 0.034 1.2E-06 44.6 5.2 23 163-185 6-28 (213)
324 1fx0_A ATP synthase alpha chai 94.9 0.028 9.7E-07 50.8 5.2 89 163-258 163-264 (507)
325 2www_A Methylmalonic aciduria 94.9 0.017 5.8E-07 50.0 3.6 25 161-185 72-96 (349)
326 2qnr_A Septin-2, protein NEDD5 94.9 0.013 4.3E-07 49.7 2.7 21 165-185 20-40 (301)
327 2dr3_A UPF0273 protein PH0284; 94.9 0.015 5.2E-07 47.0 3.1 23 163-185 23-45 (247)
328 2gza_A Type IV secretion syste 94.9 0.013 4.4E-07 51.0 2.8 23 163-185 175-197 (361)
329 2r9v_A ATP synthase subunit al 94.9 0.024 8.3E-07 51.2 4.6 89 163-258 175-276 (515)
330 1m7b_A RND3/RHOE small GTP-bin 94.9 0.017 5.7E-07 44.6 3.2 25 162-186 6-30 (184)
331 3tw8_B RAS-related protein RAB 94.8 0.02 6.9E-07 43.5 3.6 26 161-186 7-32 (181)
332 3m6a_A ATP-dependent protease 94.8 0.014 4.7E-07 53.7 3.0 24 162-185 107-130 (543)
333 1p5z_B DCK, deoxycytidine kina 94.8 0.011 3.6E-07 48.9 2.1 24 162-185 23-46 (263)
334 2r6a_A DNAB helicase, replicat 94.8 0.079 2.7E-06 47.4 8.0 51 162-218 202-252 (454)
335 1g16_A RAS-related protein SEC 94.8 0.017 5.9E-07 43.4 3.2 24 163-186 3-26 (170)
336 3jvv_A Twitching mobility prot 94.8 0.017 5.7E-07 50.2 3.3 23 163-185 123-145 (356)
337 3t1o_A Gliding protein MGLA; G 94.8 0.015 5.2E-07 44.9 2.9 23 163-185 14-36 (198)
338 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.017 5.9E-07 43.9 3.1 25 162-186 6-30 (177)
339 2yv5_A YJEQ protein; hydrolase 94.8 0.023 7.9E-07 48.1 4.1 31 149-184 156-186 (302)
340 3end_A Light-independent proto 94.8 0.018 6.3E-07 48.5 3.5 25 161-185 39-63 (307)
341 1svi_A GTP-binding protein YSX 94.8 0.02 6.8E-07 44.4 3.5 25 162-186 22-46 (195)
342 3t5g_A GTP-binding protein RHE 94.8 0.022 7.6E-07 43.5 3.7 25 162-186 5-29 (181)
343 3pqc_A Probable GTP-binding pr 94.8 0.021 7E-07 44.1 3.5 25 163-187 23-47 (195)
344 1pui_A ENGB, probable GTP-bind 94.8 0.011 3.7E-07 46.7 1.9 24 163-186 26-49 (210)
345 1ky3_A GTP-binding protein YPT 94.8 0.023 8E-07 43.2 3.8 25 162-186 7-31 (182)
346 4dsu_A GTPase KRAS, isoform 2B 94.8 0.021 7.3E-07 43.8 3.6 25 163-187 4-28 (189)
347 2cxx_A Probable GTP-binding pr 94.7 0.019 6.6E-07 44.1 3.3 22 165-186 3-24 (190)
348 3kkq_A RAS-related protein M-R 94.7 0.022 7.4E-07 43.6 3.6 25 162-186 17-41 (183)
349 1r2q_A RAS-related protein RAB 94.7 0.019 6.3E-07 43.2 3.1 24 163-186 6-29 (170)
350 3ihw_A Centg3; RAS, centaurin, 94.7 0.018 6.2E-07 44.6 3.1 25 162-186 19-43 (184)
351 1nrj_B SR-beta, signal recogni 94.7 0.02 6.9E-07 45.3 3.5 25 162-186 11-35 (218)
352 2h92_A Cytidylate kinase; ross 94.7 0.014 4.9E-07 46.5 2.5 22 164-185 4-25 (219)
353 2obl_A ESCN; ATPase, hydrolase 94.7 0.017 5.9E-07 49.9 3.2 24 163-186 71-94 (347)
354 2dhr_A FTSH; AAA+ protein, hex 94.7 0.015 5.1E-07 52.9 2.8 20 166-185 67-86 (499)
355 2qe7_A ATP synthase subunit al 94.7 0.056 1.9E-06 48.8 6.5 89 163-258 162-263 (502)
356 2bme_A RAB4A, RAS-related prot 94.7 0.02 6.8E-07 43.9 3.2 25 162-186 9-33 (186)
357 2fn4_A P23, RAS-related protei 94.7 0.034 1.2E-06 42.2 4.6 26 161-186 7-32 (181)
358 3eph_A TRNA isopentenyltransfe 94.7 0.019 6.5E-07 50.6 3.4 22 164-185 3-24 (409)
359 3vr4_D V-type sodium ATPase su 94.7 0.021 7E-07 51.1 3.6 92 164-258 152-257 (465)
360 1z0f_A RAB14, member RAS oncog 94.7 0.019 6.7E-07 43.5 3.1 26 162-187 14-39 (179)
361 1m2o_B GTP-binding protein SAR 94.6 0.02 6.9E-07 44.5 3.2 24 163-186 23-46 (190)
362 1cp2_A CP2, nitrogenase iron p 94.6 0.021 7.1E-07 47.1 3.4 22 164-185 2-23 (269)
363 2y8e_A RAB-protein 6, GH09086P 94.6 0.021 7.2E-07 43.3 3.2 23 164-186 15-37 (179)
364 1r8s_A ADP-ribosylation factor 94.6 0.019 6.5E-07 43.0 2.9 20 166-185 3-22 (164)
365 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.015 5.2E-07 52.3 2.6 23 163-185 138-160 (460)
366 3cr8_A Sulfate adenylyltranfer 94.6 0.017 5.8E-07 53.2 3.0 24 162-185 368-391 (552)
367 3c5c_A RAS-like protein 12; GD 94.6 0.021 7.2E-07 44.3 3.1 25 162-186 20-44 (187)
368 2a9k_A RAS-related protein RAL 94.6 0.021 7.3E-07 43.6 3.1 24 163-186 18-41 (187)
369 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.015 5.2E-07 49.9 2.4 22 164-185 172-193 (330)
370 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.022 7.5E-07 43.6 3.1 24 163-186 5-28 (186)
371 3bc1_A RAS-related protein RAB 94.5 0.022 7.4E-07 43.9 3.1 25 162-186 10-34 (195)
372 1ega_A Protein (GTP-binding pr 94.5 0.023 7.9E-07 48.0 3.5 25 162-186 7-31 (301)
373 1upt_A ARL1, ADP-ribosylation 94.5 0.031 1E-06 42.1 3.9 24 163-186 7-30 (171)
374 2qag_B Septin-6, protein NEDD5 94.5 0.018 6.2E-07 51.2 2.9 20 166-185 45-64 (427)
375 2afh_E Nitrogenase iron protei 94.5 0.025 8.4E-07 47.3 3.6 23 163-185 2-24 (289)
376 2oil_A CATX-8, RAS-related pro 94.5 0.022 7.5E-07 44.1 3.1 26 161-186 23-48 (193)
377 2hxs_A RAB-26, RAS-related pro 94.5 0.036 1.2E-06 42.1 4.2 25 162-186 5-29 (178)
378 1zj6_A ADP-ribosylation factor 94.5 0.061 2.1E-06 41.4 5.6 25 162-186 15-39 (187)
379 2bov_A RAla, RAS-related prote 94.5 0.022 7.6E-07 44.4 3.1 25 162-186 13-37 (206)
380 2iwr_A Centaurin gamma 1; ANK 94.5 0.018 6.2E-07 43.9 2.5 24 163-186 7-30 (178)
381 1yqt_A RNAse L inhibitor; ATP- 94.5 0.021 7E-07 52.5 3.2 23 164-186 313-335 (538)
382 3bwd_D RAC-like GTP-binding pr 94.5 0.023 7.9E-07 43.3 3.1 24 163-186 8-31 (182)
383 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.032 1.1E-06 50.7 4.4 37 146-186 28-64 (500)
384 2efe_B Small GTP-binding prote 94.5 0.023 7.8E-07 43.3 3.1 25 162-186 11-35 (181)
385 3llu_A RAS-related GTP-binding 94.5 0.024 8.1E-07 44.3 3.2 25 162-186 19-43 (196)
386 2fg5_A RAB-22B, RAS-related pr 94.4 0.024 8.1E-07 44.1 3.2 25 162-186 22-46 (192)
387 3ozx_A RNAse L inhibitor; ATP 94.4 0.02 6.7E-07 52.6 3.0 22 164-185 295-316 (538)
388 2r44_A Uncharacterized protein 94.4 0.016 5.3E-07 49.5 2.2 37 145-185 32-68 (331)
389 3cmu_A Protein RECA, recombina 94.4 0.088 3E-06 55.2 8.0 87 162-258 382-470 (2050)
390 3ozx_A RNAse L inhibitor; ATP 94.4 0.022 7.4E-07 52.3 3.2 24 162-185 24-47 (538)
391 1zbd_A Rabphilin-3A; G protein 94.4 0.026 8.8E-07 44.1 3.3 24 163-186 8-31 (203)
392 2g6b_A RAS-related protein RAB 94.4 0.025 8.4E-07 43.1 3.1 25 162-186 9-33 (180)
393 1g8p_A Magnesium-chelatase 38 94.4 0.013 4.4E-07 50.2 1.6 21 165-185 47-67 (350)
394 3fdi_A Uncharacterized protein 94.4 0.023 7.9E-07 45.1 3.0 22 164-185 7-28 (201)
395 1vg8_A RAS-related protein RAB 94.4 0.032 1.1E-06 43.6 3.8 25 162-186 7-31 (207)
396 3tkl_A RAS-related protein RAB 94.4 0.044 1.5E-06 42.3 4.6 27 161-187 14-40 (196)
397 3cmw_A Protein RECA, recombina 94.4 0.075 2.6E-06 54.9 7.3 87 162-258 382-470 (1706)
398 1yqt_A RNAse L inhibitor; ATP- 94.4 0.022 7.7E-07 52.2 3.2 23 163-185 47-69 (538)
399 2c61_A A-type ATP synthase non 94.3 0.02 6.7E-07 51.4 2.7 92 164-258 153-258 (469)
400 1ksh_A ARF-like protein 2; sma 94.3 0.025 8.6E-07 43.5 3.1 26 162-187 17-42 (186)
401 2atv_A RERG, RAS-like estrogen 94.3 0.025 8.6E-07 44.0 3.1 24 163-186 28-51 (196)
402 3oes_A GTPase rhebl1; small GT 94.3 0.026 9E-07 44.1 3.2 25 162-186 23-47 (201)
403 2qmh_A HPR kinase/phosphorylas 94.3 0.027 9.3E-07 44.7 3.2 23 163-185 34-56 (205)
404 1gwn_A RHO-related GTP-binding 94.3 0.027 9.1E-07 44.6 3.2 25 162-186 27-51 (205)
405 3clv_A RAB5 protein, putative; 94.3 0.026 8.8E-07 43.7 3.1 24 163-186 7-30 (208)
406 3euj_A Chromosome partition pr 94.3 0.024 8.3E-07 51.2 3.2 22 164-185 30-51 (483)
407 4bas_A ADP-ribosylation factor 94.3 0.032 1.1E-06 43.2 3.6 27 161-187 15-41 (199)
408 2fh5_B SR-beta, signal recogni 94.3 0.031 1.1E-06 44.1 3.6 25 162-186 6-30 (214)
409 3iev_A GTP-binding protein ERA 94.3 0.035 1.2E-06 47.1 4.1 26 161-186 8-33 (308)
410 3gmt_A Adenylate kinase; ssgci 94.3 0.024 8.1E-07 46.1 2.8 23 163-185 8-30 (230)
411 4gzl_A RAS-related C3 botulinu 94.2 0.039 1.3E-06 43.4 4.1 24 163-186 30-53 (204)
412 2b6h_A ADP-ribosylation factor 94.2 0.026 9E-07 43.9 3.0 24 163-186 29-52 (192)
413 3v9p_A DTMP kinase, thymidylat 94.2 0.033 1.1E-06 45.2 3.7 23 163-185 25-47 (227)
414 2o52_A RAS-related protein RAB 94.2 0.028 9.6E-07 44.0 3.2 26 161-186 23-48 (200)
415 2ew1_A RAS-related protein RAB 94.2 0.028 9.7E-07 44.3 3.2 26 161-186 24-49 (201)
416 3k53_A Ferrous iron transport 94.2 0.033 1.1E-06 46.1 3.8 24 163-186 3-26 (271)
417 3gqb_B V-type ATP synthase bet 94.2 0.022 7.5E-07 50.9 2.7 92 164-258 148-260 (464)
418 2qu8_A Putative nucleolar GTP- 94.2 0.037 1.3E-06 44.4 3.9 26 161-186 27-52 (228)
419 1q57_A DNA primase/helicase; d 94.2 0.32 1.1E-05 44.0 10.6 54 161-220 240-293 (503)
420 1p9r_A General secretion pathw 94.2 0.027 9.2E-07 50.0 3.3 24 162-185 166-189 (418)
421 2gf9_A RAS-related protein RAB 94.2 0.028 9.6E-07 43.4 3.1 25 162-186 21-45 (189)
422 3cbq_A GTP-binding protein REM 94.2 0.028 9.4E-07 44.0 3.1 23 162-184 22-44 (195)
423 3reg_A RHO-like small GTPase; 94.2 0.028 9.6E-07 43.6 3.1 25 162-186 22-46 (194)
424 1zd9_A ADP-ribosylation factor 94.2 0.028 9.7E-07 43.4 3.1 25 162-186 21-45 (188)
425 2q3h_A RAS homolog gene family 94.2 0.028 9.6E-07 43.8 3.1 25 162-186 19-43 (201)
426 3bk7_A ABC transporter ATP-bin 94.2 0.026 8.7E-07 52.6 3.2 22 164-185 383-404 (607)
427 3ch4_B Pmkase, phosphomevalona 94.2 0.036 1.2E-06 44.1 3.7 24 162-185 10-33 (202)
428 2a5j_A RAS-related protein RAB 94.2 0.029 9.8E-07 43.5 3.1 25 162-186 20-44 (191)
429 2dpy_A FLII, flagellum-specifi 94.1 0.026 9.1E-07 50.4 3.2 25 162-186 156-180 (438)
430 2axn_A 6-phosphofructo-2-kinas 94.1 0.03 1E-06 51.1 3.6 23 163-185 35-57 (520)
431 3dz8_A RAS-related protein RAB 94.1 0.028 9.6E-07 43.6 2.9 25 162-186 22-46 (191)
432 1x3s_A RAS-related protein RAB 94.1 0.03 1E-06 43.2 3.1 24 163-186 15-38 (195)
433 3lv8_A DTMP kinase, thymidylat 94.1 0.052 1.8E-06 44.3 4.6 23 163-185 27-49 (236)
434 2p5s_A RAS and EF-hand domain 94.1 0.029 1E-06 43.8 3.0 25 162-186 27-51 (199)
435 1z06_A RAS-related protein RAB 94.1 0.03 1E-06 43.2 3.1 25 162-186 19-43 (189)
436 3j16_B RLI1P; ribosome recycli 94.1 0.027 9.3E-07 52.4 3.2 23 163-185 103-125 (608)
437 2bcg_Y Protein YP2, GTP-bindin 94.1 0.031 1.1E-06 43.8 3.2 25 162-186 7-31 (206)
438 2rcn_A Probable GTPase ENGC; Y 94.1 0.029 1E-06 48.7 3.2 23 164-186 216-238 (358)
439 3lxx_A GTPase IMAP family memb 94.1 0.042 1.4E-06 44.4 4.0 26 162-187 28-53 (239)
440 2ck3_A ATP synthase subunit al 94.1 0.036 1.2E-06 50.1 3.9 103 152-258 152-271 (510)
441 3j16_B RLI1P; ribosome recycli 94.1 0.027 9.4E-07 52.4 3.2 22 164-185 379-400 (608)
442 2j1l_A RHO-related GTP-binding 94.1 0.031 1.1E-06 44.3 3.2 25 162-186 33-57 (214)
443 2orw_A Thymidine kinase; TMTK, 94.0 0.03 1E-06 43.7 3.0 21 164-184 4-24 (184)
444 2fv8_A H6, RHO-related GTP-bin 94.0 0.033 1.1E-06 43.9 3.2 24 163-186 25-48 (207)
445 2gf0_A GTP-binding protein DI- 94.0 0.047 1.6E-06 42.3 4.1 25 162-186 7-31 (199)
446 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.04 1.4E-06 41.5 3.5 22 163-184 23-44 (149)
447 4tmk_A Protein (thymidylate ki 94.0 0.061 2.1E-06 43.1 4.8 22 164-185 4-25 (213)
448 2h17_A ADP-ribosylation factor 94.0 0.032 1.1E-06 42.8 3.0 24 163-186 21-44 (181)
449 2cjw_A GTP-binding protein GEM 94.0 0.03 1E-06 43.7 2.9 22 163-184 6-27 (192)
450 1moz_A ARL1, ADP-ribosylation 94.0 0.029 1E-06 42.9 2.7 24 162-185 17-40 (183)
451 2il1_A RAB12; G-protein, GDP, 94.0 0.028 9.7E-07 43.6 2.7 25 162-186 25-49 (192)
452 3b60_A Lipid A export ATP-bind 93.9 0.029 1E-06 51.9 3.1 24 162-185 368-391 (582)
453 2qag_C Septin-7; cell cycle, c 93.9 0.028 9.6E-07 49.9 2.8 21 166-186 34-54 (418)
454 2hup_A RAS-related protein RAB 93.9 0.036 1.2E-06 43.5 3.2 26 161-186 27-52 (201)
455 1g41_A Heat shock protein HSLU 93.9 0.027 9.3E-07 50.3 2.6 23 163-185 50-72 (444)
456 2atx_A Small GTP binding prote 93.8 0.035 1.2E-06 43.0 3.1 24 163-186 18-41 (194)
457 3cf2_A TER ATPase, transitiona 93.8 0.049 1.7E-06 52.3 4.5 24 163-186 511-534 (806)
458 2gco_A H9, RHO-related GTP-bin 93.8 0.037 1.3E-06 43.3 3.2 24 163-186 25-48 (201)
459 1u0l_A Probable GTPase ENGC; p 93.8 0.034 1.2E-06 47.0 3.1 32 149-185 160-191 (301)
460 2x77_A ADP-ribosylation factor 93.8 0.056 1.9E-06 41.6 4.2 25 162-186 21-45 (189)
461 2j0v_A RAC-like GTP-binding pr 93.8 0.037 1.3E-06 43.5 3.2 25 162-186 8-32 (212)
462 3cph_A RAS-related protein SEC 93.8 0.036 1.2E-06 43.5 3.1 25 162-186 19-43 (213)
463 3bk7_A ABC transporter ATP-bin 93.8 0.032 1.1E-06 52.0 3.1 23 163-185 117-139 (607)
464 3b5x_A Lipid A export ATP-bind 93.8 0.032 1.1E-06 51.7 3.1 24 162-185 368-391 (582)
465 3ld9_A DTMP kinase, thymidylat 93.8 0.046 1.6E-06 44.2 3.6 24 162-185 20-43 (223)
466 3oaa_A ATP synthase subunit al 93.7 0.11 3.7E-06 47.0 6.3 89 163-258 162-263 (513)
467 1wf3_A GTP-binding protein; GT 93.7 0.054 1.9E-06 45.8 4.2 25 162-186 6-30 (301)
468 2f7s_A C25KG, RAS-related prot 93.7 0.041 1.4E-06 43.5 3.3 26 161-186 23-48 (217)
469 4akg_A Glutathione S-transfera 93.7 0.15 5.1E-06 55.0 8.2 52 164-222 1268-1319(2695)
470 4hlc_A DTMP kinase, thymidylat 93.7 0.05 1.7E-06 43.3 3.7 22 164-185 3-24 (205)
471 1bif_A 6-phosphofructo-2-kinas 93.6 0.04 1.4E-06 49.5 3.4 23 163-185 39-61 (469)
472 2fu5_C RAS-related protein RAB 93.6 0.023 7.7E-07 43.6 1.5 25 162-186 7-31 (183)
473 3k1j_A LON protease, ATP-depen 93.6 0.033 1.1E-06 51.8 2.8 37 145-185 46-82 (604)
474 3q3j_B RHO-related GTP-binding 93.6 0.051 1.7E-06 43.1 3.6 24 163-186 27-50 (214)
475 2h57_A ADP-ribosylation factor 93.6 0.031 1.1E-06 43.2 2.3 25 163-187 21-45 (190)
476 1t9h_A YLOQ, probable GTPase E 93.5 0.021 7.3E-07 48.5 1.3 22 164-185 174-195 (307)
477 2xtp_A GTPase IMAP family memb 93.5 0.06 2E-06 44.1 4.0 25 162-186 21-45 (260)
478 2r8r_A Sensor protein; KDPD, P 93.5 0.04 1.4E-06 44.6 2.8 22 164-185 7-28 (228)
479 2g3y_A GTP-binding protein GEM 93.5 0.044 1.5E-06 43.8 3.1 24 162-185 36-59 (211)
480 4dhe_A Probable GTP-binding pr 93.5 0.033 1.1E-06 44.2 2.3 26 162-187 28-53 (223)
481 3mfy_A V-type ATP synthase alp 93.5 0.11 3.8E-06 47.5 5.9 58 152-217 217-275 (588)
482 1tf7_A KAIC; homohexamer, hexa 93.4 0.042 1.4E-06 50.2 3.2 19 165-183 41-59 (525)
483 3ea0_A ATPase, para family; al 93.4 0.054 1.9E-06 43.7 3.6 24 162-185 3-27 (245)
484 3cwq_A Para family chromosome 93.4 0.045 1.5E-06 43.5 3.0 21 165-185 2-23 (209)
485 2yl4_A ATP-binding cassette SU 93.4 0.03 1E-06 52.0 2.2 24 162-185 369-392 (595)
486 3cmw_A Protein RECA, recombina 93.4 0.15 5E-06 52.8 7.3 87 162-258 1430-1518(1706)
487 1g8f_A Sulfate adenylyltransfe 93.4 0.047 1.6E-06 49.7 3.4 24 162-185 394-417 (511)
488 2oap_1 GSPE-2, type II secreti 93.3 0.043 1.5E-06 50.0 3.1 22 164-185 261-282 (511)
489 4b3f_X DNA-binding protein smu 93.3 0.092 3.1E-06 49.2 5.4 61 147-218 193-254 (646)
490 3qf4_B Uncharacterized ABC tra 93.3 0.035 1.2E-06 51.6 2.5 24 162-185 380-403 (598)
491 3k9g_A PF-32 protein; ssgcid, 93.2 0.049 1.7E-06 44.8 3.1 25 161-185 25-50 (267)
492 3kjh_A CO dehydrogenase/acetyl 93.2 0.038 1.3E-06 44.6 2.3 21 165-185 2-22 (254)
493 1m8p_A Sulfate adenylyltransfe 93.2 0.055 1.9E-06 50.0 3.6 24 162-185 395-418 (573)
494 3t5d_A Septin-7; GTP-binding p 93.2 0.046 1.6E-06 45.4 2.8 23 164-186 9-31 (274)
495 4dzz_A Plasmid partitioning pr 93.2 0.05 1.7E-06 42.6 2.9 22 164-185 2-24 (206)
496 1dek_A Deoxynucleoside monopho 93.2 0.058 2E-06 44.1 3.3 22 164-185 2-23 (241)
497 2qtf_A Protein HFLX, GTP-bindi 93.2 0.049 1.7E-06 47.4 3.1 25 162-186 178-202 (364)
498 3pxi_A Negative regulator of g 93.1 0.067 2.3E-06 51.1 4.2 23 163-185 521-543 (758)
499 3b1v_A Ferrous iron uptake tra 93.1 0.087 3E-06 43.8 4.4 24 163-186 3-26 (272)
500 3hdt_A Putative kinase; struct 93.1 0.063 2.2E-06 43.3 3.4 23 163-185 14-36 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.86 E-value=2.1e-21 Score=180.21 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=97.9
Q ss_pred hhHhHHHHHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHc--CCCcccccceeeEEecccccCCC--CHHHHHHHHHH
Q 046049 145 FERGREELFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFN--NNHVKFYFDCHAWVKNLSVSIAY--DFGKILDDIIK 219 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~vs~~~--~~~~il~~i~~ 219 (261)
|+.++++|.++|... +...++|+|+||||+||||||+.+|+ +.+++.+|++++|| ++++.+ ++..++..|+.
T Consensus 133 R~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv---~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 133 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL---KDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE---ECCCCSTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE---EECCCCCCCHHHHHHHHHH
Confidence 999999999999765 34689999999999999999999998 77899999999999 999985 89999999999
Q ss_pred HhCCCCC--CccccCC-CHHHHHHHHHHhccCC-eEEEEeecCCC
Q 046049 220 SVMPPSR--VSVIIGE-DYQLKKSILRDYLTDK-KYFIVLDDVFD 260 (261)
Q Consensus 220 ~l~~~~~--~~~~~~~-~~~~l~~~l~~~L~~k-r~LlVlDDVW~ 260 (261)
+++.... .....+. +.+.+...+++.|.++ ||||||||||+
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC
Confidence 9987532 1122233 6778899999999996 99999999997
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=5.8e-17 Score=162.32 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=90.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCc-ccccc-eeeEEecccccCCCC--HHHHHHHHHHH
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHV-KFYFD-CHAWVKNLSVSIAYD--FGKILDDIIKS 220 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~vs~~~~--~~~il~~i~~~ 220 (261)
|+.++++|.++|...+.+.++|+|+||||+||||||+.+|++.+. ..+|. ...|| ++++.++ ....+..++..
T Consensus 129 R~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~ 205 (1249)
T 3sfz_A 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV---SIGKQDKSGLLMKLQNLCMR 205 (1249)
T ss_dssp CHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEE---ECCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEE---EECCcCchHHHHHHHHHHHH
Confidence 999999999999876677899999999999999999999996543 55565 55699 9988654 34457778888
Q ss_pred hCCCCCCccccCCCHHHHHHHHHHhccCC--eEEEEeecCCC
Q 046049 221 VMPPSRVSVIIGEDYQLKKSILRDYLTDK--KYFIVLDDVFD 260 (261)
Q Consensus 221 l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDDVW~ 260 (261)
+............+.+.+...++..|.++ ||||||||||+
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~ 247 (1249)
T 3sfz_A 206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD 247 (1249)
T ss_dssp HTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC
T ss_pred hhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC
Confidence 87654322222237889999999999887 99999999997
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.69 E-value=2.2e-17 Score=159.52 Aligned_cols=112 Identities=19% Similarity=0.090 Sum_probs=88.4
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccce-eeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC-HAWVKNLSVSIAYDFGKILDDIIKSVMP 223 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~vs~~~~~~~il~~i~~~l~~ 223 (261)
|+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|++ ++|+ ++++.++...++..|+..+..
T Consensus 133 Re~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WV---sVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 133 RLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEE---ECCCSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEE---EeCCCCCHHHHHHHHHHHHhh
Confidence 9999999999998643 4789999999999999999999998788999997 8999 999999998888888775432
Q ss_pred C---CCCc-c---ccCCCHHHHHHHHHHhc---cCCeEEEEeecCCC
Q 046049 224 P---SRVS-V---IIGEDYQLKKSILRDYL---TDKKYFIVLDDVFD 260 (261)
Q Consensus 224 ~---~~~~-~---~~~~~~~~l~~~l~~~L---~~kr~LlVlDDVW~ 260 (261)
. .... . ....+.+.+...++..| .+||+||||||||+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd 255 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh
Confidence 1 1100 0 00114556677777766 78999999999996
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=139.99 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=84.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCc-ccccc-eeeEEecccccCCCCHHHHHHHH---HH
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHV-KFYFD-CHAWVKNLSVSIAYDFGKILDDI---IK 219 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~vs~~~~~~~il~~i---~~ 219 (261)
|+.+++.|.++|.....+.++|+|+||||+||||||..+|++..+ ..+|. .++|+ +++.. +...++..+ +.
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv---~~~~~-~~~~~~~~l~~l~~ 204 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV---SVGKQ-DKSGLLMKLQNLCT 204 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEE---EEESC-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEE---ECCCC-chHHHHHHHHHHHH
Confidence 999999999999765556899999999999999999999997655 78894 78999 98876 344444444 44
Q ss_pred HhCCCCCCccccCC-CHHHHHHHHHHhccC--CeEEEEeecCCC
Q 046049 220 SVMPPSRVSVIIGE-DYQLKKSILRDYLTD--KKYFIVLDDVFD 260 (261)
Q Consensus 220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~--kr~LlVlDDVW~ 260 (261)
.++...... .... +.+.+...+...|.+ +++||||||||+
T Consensus 205 ~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~ 247 (591)
T 1z6t_A 205 RLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD 247 (591)
T ss_dssp HHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC
T ss_pred Hhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC
Confidence 554321100 1122 777888888888876 789999999996
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.39 E-value=5.4e-13 Score=98.10 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhchhhh--hcchhh---hcCCccHHHHHHHHHHHHhhhHhHHHHHHHHHHhcc
Q 046049 22 LHLIQLFREHFDKAKISLPFWQ--LLDSEE---NVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQ 85 (261)
Q Consensus 22 ~~~~~~~~~~~~~L~~~l~~i~--~~d~~~---~~~~~~~~~Wl~~lr~~a~d~eD~id~~~~~~~~~~ 85 (261)
..+..+++++++.|+.+|..|+ +.|+++ +..++.++.|+.+||+++||+|||||+|.++.....
T Consensus 18 ~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~~~ 86 (115)
T 3qfl_A 18 FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDGIK 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3567899999999999999999 345444 347999999999999999999999999999987543
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.06 E-value=4.9e-10 Score=99.48 Aligned_cols=107 Identities=19% Similarity=0.136 Sum_probs=76.6
Q ss_pred hhHhHHHHHHHH-hc---C-CCCeEEEEE--EeCCCccHHHHHHHHHcCCCcccc-----cc-eeeEEecccccCCCCHH
Q 046049 145 FERGREELFDLL-IE---G-PPRLSVVAI--LDGIGFDMTAFAADAFNNNHVKFY-----FD-CHAWVKNLSVSIAYDFG 211 (261)
Q Consensus 145 ~~~~~~~l~~~L-~~---~-~~~~~vi~I--vG~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~~~vs~~~~~~ 211 (261)
|+.+++.|.++| .. + ......+.| +|++|+|||||++.+++. .... |. ..+|+ ......+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~ 101 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYV---NAFNAPNLY 101 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEE---EGGGCCSHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEE---ECCCCCCHH
Confidence 888888888887 42 2 012345555 999999999999999883 3221 23 24677 766777889
Q ss_pred HHHHHHHHHhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCCC
Q 046049 212 KILDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVFD 260 (261)
Q Consensus 212 ~il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW~ 260 (261)
.++..|+.+++..... .. +...+...+...|. +++++|||||+|.
T Consensus 102 ~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV----RGAPALDILKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHTCCCCC----TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 9999999999764320 12 55667777777775 7899999999974
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.80 E-value=1.1e-08 Score=89.86 Aligned_cols=108 Identities=14% Similarity=-0.041 Sum_probs=76.0
Q ss_pred hhHhHHHHHHHHhc--CCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccc--------cceeeEEecccccCCC-CHHHH
Q 046049 145 FERGREELFDLLIE--GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFY--------FDCHAWVKNLSVSIAY-DFGKI 213 (261)
Q Consensus 145 ~~~~~~~l~~~L~~--~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~vs~~~-~~~~i 213 (261)
++.+++.+.++|.. .....+.+.|+|++|+||||||+.+++. .... ....+|+ ..+... +...+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~ 99 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYV---NCREVGGTPQAV 99 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEE---EHHHHCSCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEE---ECccCCCCHHHH
Confidence 77778887777653 2234568999999999999999999883 3221 2345677 666656 88889
Q ss_pred HHHHHHHhCCCCCCccccCCCHHHHHHHHHHhccCCeEEEEeecCC
Q 046049 214 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF 259 (261)
Q Consensus 214 l~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW 259 (261)
+..++.++.+.... ..+.+...+...+...+..++.+|||||++
T Consensus 100 ~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~ 143 (384)
T 2qby_B 100 LSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVD 143 (384)
T ss_dssp HHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTH
T ss_pred HHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHH
Confidence 99999888432220 001155667778888888777799999985
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.78 E-value=2.5e-08 Score=87.40 Aligned_cols=106 Identities=17% Similarity=0.061 Sum_probs=78.6
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccc------cceeeEEecccccCCCCHHHHHHH
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFY------FDCHAWVKNLSVSIAYDFGKILDD 216 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~vs~~~~~~~il~~ 216 (261)
++.+++.+..+|... ......+.|+|++|+||||||+.+++ ..... --..+|+ ..+...+...++..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYV---NARHRETPYRVASA 98 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEE---ETTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEE---ECCcCCCHHHHHHH
Confidence 888899999888542 23456889999999999999999987 33221 1234677 77777788999999
Q ss_pred HHHHhCCCCCCccccCC-CHHHHHHHHHHhc--cCCeEEEEeecCC
Q 046049 217 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYL--TDKKYFIVLDDVF 259 (261)
Q Consensus 217 i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDDVW 259 (261)
++.+++..... .. +...+...+...+ .+++.+|||||+.
T Consensus 99 l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~ 140 (387)
T 2v1u_A 99 IAEAVGVRVPF----TGLSVGEVYERLVKRLSRLRGIYIIVLDEID 140 (387)
T ss_dssp HHHHHSCCCCS----SCCCHHHHHHHHHHHHTTSCSEEEEEEETTT
T ss_pred HHHHhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEccHh
Confidence 99999764331 22 5666777777777 4568999999985
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=9.7e-08 Score=83.82 Aligned_cols=106 Identities=22% Similarity=0.173 Sum_probs=76.2
Q ss_pred hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc-ceeeEEecccccCCCCHHHHHHHHHH
Q 046049 145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF-DCHAWVKNLSVSIAYDFGKILDDIIK 219 (261)
Q Consensus 145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~vs~~~~~~~il~~i~~ 219 (261)
++.+++.|..++.. .....+.+.|+|++|+|||||++.+.+. ..... -..+++ ..+...+...++..++.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i---~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYI---NGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEE---ETTTCCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEE---eCccCCCHHHHHHHHHH
Confidence 88888888887764 2223348999999999999999999873 32221 234566 66777788899999999
Q ss_pred HhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049 220 SVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF 259 (261)
Q Consensus 220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW 259 (261)
.++..... .. +...+...+...+. +++.+||||++.
T Consensus 97 ~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~ 135 (389)
T 1fnn_A 97 SLNIPFPR----RGLSRDEFLALLVEHLRERDLYMFLVLDDAF 135 (389)
T ss_dssp HTTCCCCS----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGG
T ss_pred HhCccCCC----CCCCHHHHHHHHHHHHhhcCCeEEEEEECcc
Confidence 98754321 22 56666677776664 568899999985
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.69 E-value=1.8e-08 Score=88.28 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=76.2
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc---ceeeEEecccccCCCCHHHHHHHHHH
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF---DCHAWVKNLSVSIAYDFGKILDDIIK 219 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~vs~~~~~~~il~~i~~ 219 (261)
|+.+++.|.+++... ......+.|+|++|+|||||++.+++ .....| ...+|+ ..+...+...++..++.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYI---NTRQIDTPYRVLADLLE 99 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEE---EHHHHCSHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEE---ECCCCCCHHHHHHHHHH
Confidence 889999999888642 23456889999999999999999988 343333 234667 66666677888888888
Q ss_pred HhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049 220 SVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF 259 (261)
Q Consensus 220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW 259 (261)
+++..... .. +...+...+...+. +++.+||||+++
T Consensus 100 ~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~ 138 (386)
T 2qby_A 100 SLDVKVPF----TGLSIAELYRRLVKAVRDYGSQVVIVLDEID 138 (386)
T ss_dssp TTSCCCCS----SSCCHHHHHHHHHHHHHTCCSCEEEEEETHH
T ss_pred HhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 87654321 22 56666666777664 458999999975
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.64 E-value=6.6e-08 Score=83.51 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=69.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC------CCHHHHHHHHH
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA------YDFGKILDDII 218 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~------~~~~~il~~i~ 218 (261)
|+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+ ..... .+...++..+.
T Consensus 17 R~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~---~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 17 REEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILI---DCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp CHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEE---EHHHHHHTTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEE---EeecccccccCCCHHHHHHHHH
Confidence 999999999988653 689999999999999999998742 1 5666 55432 25667777776
Q ss_pred HHhCCC------------C-CCccccCC-CHHHHHHHHHHhccC-CeEEEEeecCCC
Q 046049 219 KSVMPP------------S-RVSVIIGE-DYQLKKSILRDYLTD-KKYFIVLDDVFD 260 (261)
Q Consensus 219 ~~l~~~------------~-~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDDVW~ 260 (261)
..+... . ........ +..++...+...+.. ++++|||||++.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~ 139 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQY 139 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGG
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHH
Confidence 665430 0 00000012 566677777766643 389999999853
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.3e-07 Score=76.63 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=69.2
Q ss_pred hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcc---c---ccceeeEEecccccCCCCHHHHHHH
Q 046049 145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVK---F---YFDCHAWVKNLSVSIAYDFGKILDD 216 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~---~F~~~~wv~~~~vs~~~~~~~il~~ 216 (261)
|+++.+.|...|... ......+-|+|++|+|||++++.|.+.-.-. . .| ..+.| ......+...++..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~I---Nc~~~~t~~~~~~~ 100 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHI---DALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEE---ETTCCC--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEE---eccccCCHHHHHHH
Confidence 889999988877542 2346778999999999999999998732111 1 12 23455 44556678899999
Q ss_pred HHHHhCCCCCCccccCC-CHHHHHHHHHHh--ccCCeEEEEeecC
Q 046049 217 IIKSVMPPSRVSVIIGE-DYQLKKSILRDY--LTDKKYFIVLDDV 258 (261)
Q Consensus 217 i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~--L~~kr~LlVlDDV 258 (261)
|++++.+.... .. ..+.+...+... -.++.++|+||.+
T Consensus 101 I~~~L~g~~~~----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~ 141 (318)
T 3te6_A 101 IWFAISKENLC----GDISLEALNFYITNVPKAKKRKTLILIQNP 141 (318)
T ss_dssp HHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECC
T ss_pred HHHHhcCCCCC----chHHHHHHHHHHHHhhhccCCceEEEEecH
Confidence 99999765320 12 444444444332 2467899999986
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.48 E-value=5.6e-07 Score=77.74 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=62.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-----CCHHHHHHHHHH
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-----YDFGKILDDIIK 219 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-----~~~~~il~~i~~ 219 (261)
|+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+ ..... .+...++..+..
T Consensus 18 R~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~---~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 18 REKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYL---DLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp CHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEE---EGGGGTTCSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEE---EchhhccccCCCHHHHHHHHHH
Confidence 8999999988 643 59999999999999999999874 222 24677 65432 344555555444
Q ss_pred HhC-------------CCC-----CC-cccc-----CC-CHHHHHHHHHHhccCCeEEEEeecCC
Q 046049 220 SVM-------------PPS-----RV-SVII-----GE-DYQLKKSILRDYLTDKKYFIVLDDVF 259 (261)
Q Consensus 220 ~l~-------------~~~-----~~-~~~~-----~~-~~~~l~~~l~~~L~~kr~LlVlDDVW 259 (261)
.+. ... .. .... .. ....+...+.+.-. ++++|||||+.
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~ 147 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQ 147 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGG
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHH
Confidence 331 000 00 0000 12 55566666655433 48999999985
No 14
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.27 E-value=2.6e-06 Score=68.04 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=36.7
Q ss_pred hhHhHHHHHHHHhcCCCC--eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049 145 FERGREELFDLLIEGPPR--LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~--~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 199 (261)
.....+.+..++...... ...+.|+|++|+||||||+.+++ .........+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~ 88 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIV 88 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEE
Confidence 555566677777654322 26788999999999999999998 333333455666
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.17 E-value=6.4e-06 Score=65.87 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=32.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.+.+++.... ...+.|+|++|+||||||+.+.+
T Consensus 22 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 22 QDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 7778888888887653 33389999999999999999987
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=4e-06 Score=65.47 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=32.6
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.+.+++.... ...+.|+|++|+||||||+.+.+
T Consensus 27 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 7888899999886533 45578999999999999999877
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.06 E-value=1e-05 Score=65.39 Aligned_cols=40 Identities=18% Similarity=-0.043 Sum_probs=33.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.|..++.... ..+.+.|+|++|+||||||+.+++
T Consensus 28 ~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 28 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 7788888888886543 235788999999999999999987
No 18
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=3.4e-05 Score=60.34 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=30.1
Q ss_pred hhHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.....+.+.+++..-. .....+.|+|++|+|||||++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4555566666554322 2357899999999999999999987
No 19
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=2.5e-05 Score=66.48 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=32.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+
T Consensus 26 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 7777888888887653 23388999999999999999987
No 20
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.77 E-value=3.7e-05 Score=59.72 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=32.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.+.+.+.... ...+.|+|++|+||||||+.+.+
T Consensus 27 ~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 27 RDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 7788888888886532 44568999999999999999876
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=7.3e-05 Score=62.70 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=30.3
Q ss_pred hhHhHHHHHHHHhc---C--------CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIE---G--------PPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+..++.|.+.+.. . -....-+.|+|++|+||||||+.+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 66666666665532 1 123456889999999999999999883
No 22
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.56 E-value=0.0004 Score=55.54 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=51.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC------ccccCC--
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV------SVIIGE-- 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~------~~~~~~-- 233 (261)
.-.++.|+|++|+|||||+..+.. ..-...+|+ +....++...+.. +...++..... ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYV---DTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFK 89 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEE---ESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEE---ECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHH
Confidence 456999999999999999998876 112356777 6666556655443 44433321000 000011
Q ss_pred CHHHHHHHHHHhccCCeEEEEeecC
Q 046049 234 DYQLKKSILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 234 ~~~~l~~~l~~~L~~kr~LlVlDDV 258 (261)
+.......++..+..+.-+||||.+
T Consensus 90 ~~~~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 90 EQRRVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEcCc
Confidence 2234555566666545678999975
No 23
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.55 E-value=8.1e-05 Score=63.77 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=44.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccc--cCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSV--SIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKS 240 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~v--s~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~ 240 (261)
-+++.|+|++|+||||||..+... .-...+|+ +. +...+. . ..+.+....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyI---s~~~eE~v~~---------------~-----~~~le~~l~ 174 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYA---TVRFGEPLSG---------------Y-----NTDFNVFVD 174 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCE---EEEBSCSSTT---------------C-----BCCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEE---Eecchhhhhh---------------h-----hcCHHHHHH
Confidence 456789999999999999998763 22244677 65 222110 0 115566666
Q ss_pred HHHHhccCCeEEEEeecC
Q 046049 241 ILRDYLTDKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~~kr~LlVlDDV 258 (261)
.+.+.+...+ +||+|++
T Consensus 175 ~i~~~l~~~~-LLVIDsI 191 (331)
T 2vhj_A 175 DIARAMLQHR-VIVIDSL 191 (331)
T ss_dssp HHHHHHHHCS-EEEEECC
T ss_pred HHHHHHhhCC-EEEEecc
Confidence 6777776555 9999986
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.54 E-value=0.00018 Score=59.27 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.++|++|+|||+||+.+.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34577999999999999999988
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.0001 Score=62.69 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=32.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.+..++..+. ...+.++|++|+||||+|+.+++
T Consensus 30 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp CHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 6777888888887653 33489999999999999999987
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.46 E-value=0.00017 Score=64.72 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+........ ....+.|+|++|+||||||+.+.+
T Consensus 117 ~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 117 YHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp HHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334444443322 267889999999999999999988
No 27
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.42 E-value=0.00028 Score=60.39 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+..++.........+.|+|++|+||||||+.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3344444443322456788999999999999999987
No 28
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.41 E-value=0.00068 Score=57.50 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....+.++|++|+||||||+.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3467889999999999999999983
No 29
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=0.00016 Score=57.94 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=29.5
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..++|.+.+........+|+|+|+.|+|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556666554334578999999999999999998865
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.00065 Score=58.31 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+-+.++|++|+|||+||+.+.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467889999999999999999983
No 31
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.38 E-value=0.00045 Score=60.17 Aligned_cols=88 Identities=19% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK 239 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~ 239 (261)
+.-.++.|.|++|+|||||+..+... ....=...+|+ +....++.. .+++++.......-... +.++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyI---d~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFI---DAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEE---ecccccchH-----HHHHcCCchhhhhhhhccCHHHHH
Confidence 34579999999999999999988763 22111245788 776666654 45556544321101112 566666
Q ss_pred HHHHHhcc-CCeEEEEeecC
Q 046049 240 SILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 240 ~~l~~~L~-~kr~LlVlDDV 258 (261)
..+...++ .+--++|+|.+
T Consensus 129 ~~~~~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 129 EIVDELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHHHHHTSCCSEEEEECT
T ss_pred HHHHHHhhhcCCCeEEehHh
Confidence 66666554 44568888976
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.34 E-value=0.0015 Score=56.63 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...+...+.......+.+-|+|++|+|||+||+.+.+.
T Consensus 56 l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 56 AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44466666655433468899999999999999999873
No 33
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.29 E-value=0.00028 Score=60.23 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=29.8
Q ss_pred hhHhHHHHHHHHhcCCC-CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPP-RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~-~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+......+.+++..-+. ...-+.++|++|+|||+||..+.+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 44455556666654322 246788999999999999999988
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.28 E-value=0.00027 Score=60.56 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHh----------cCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLI----------EGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~----------~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|.+.+. ......+-+-++|++|+|||+||+.+.+
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 5666666666552 1112345688999999999999999988
No 35
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.25 E-value=0.00046 Score=54.93 Aligned_cols=41 Identities=12% Similarity=-0.035 Sum_probs=32.0
Q ss_pred hhHhHHHHHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.|.+.+... .....+|+|.|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667777777653 24568999999999999999998865
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.20 E-value=0.00048 Score=58.29 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+.|+|++|+|||+||+.+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999997766
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.00064 Score=62.19 Aligned_cols=42 Identities=12% Similarity=-0.021 Sum_probs=33.4
Q ss_pred hhHhHHHHHHHHhcCC---------------CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIEGP---------------PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~---------------~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+..++.|.++|.... ...+.+.|+|++|+||||+|+.+.+.
T Consensus 44 ~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7778888888886410 13468899999999999999999883
No 38
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.18 E-value=0.00058 Score=57.51 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.|+|++|+||||||+.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46788999999999999999988
No 39
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.14 E-value=0.0012 Score=57.28 Aligned_cols=87 Identities=18% Similarity=0.081 Sum_probs=52.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~ 240 (261)
.-.++.|.|++|+||||||..+... ....=...+|+ +....++.. ..+.++.......-... +.++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi---~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~ 129 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFI---DAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALE 129 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEE---ECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 4578999999999999999887652 11111356788 777776653 24455543221000112 5566665
Q ss_pred HHHHhcc-CCeEEEEeecC
Q 046049 241 ILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~-~kr~LlVlDDV 258 (261)
.+..... .+--+||+|.+
T Consensus 130 ~~~~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHHHHTTTCCSEEEEECG
T ss_pred HHHHHHhcCCCCEEEEcCh
Confidence 5555553 34568899965
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00086 Score=55.29 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+.|+|++|+||||||+.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.00047 Score=60.04 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=29.1
Q ss_pred hhHhHHHHHHHHhc----C------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE----G------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|.+.+.. . .....-+.|+|++|+|||+||+.+.+
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 55556666555431 0 12346788999999999999999987
No 42
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.13 E-value=0.0017 Score=52.69 Aligned_cols=94 Identities=4% Similarity=-0.004 Sum_probs=53.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC---c-cccCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV---S-VIIGE 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~---~-~~~~~ 233 (261)
.-.++.|+|++|+|||||+..+........ .-...+|+ +....++...+. .++..++..... . .-...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i---~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI---DTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE---ESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEE---ECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEec
Confidence 346999999999999999998876321111 12456788 666655555443 344555433210 0 00011
Q ss_pred -CHHH---HHHHHHHhcc-CCeEEEEeecCC
Q 046049 234 -DYQL---KKSILRDYLT-DKKYFIVLDDVF 259 (261)
Q Consensus 234 -~~~~---l~~~l~~~L~-~kr~LlVlDDVW 259 (261)
+..+ +...+.+.+. .+--+||||.+-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2222 3334555553 466789999863
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.12 E-value=0.0015 Score=54.31 Aligned_cols=35 Identities=20% Similarity=0.051 Sum_probs=26.8
Q ss_pred HHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 152 LFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 152 l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+.+.+... .....-+-|+|++|+|||+||+.+.+.
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45555422 345678889999999999999999883
No 44
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.10 E-value=0.00065 Score=57.50 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=23.3
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 159 GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 159 ~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
......+|+|+|+.|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999998865
No 45
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.09 E-value=0.0043 Score=53.67 Aligned_cols=94 Identities=4% Similarity=-0.000 Sum_probs=56.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC-------cc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV-------SV 229 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~-------~~ 229 (261)
+.-.++.|+|++|+||||||..+........ .-...+|+ +....++...+.. ++..++..... ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi---~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~ 195 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI---DTENTFRPDRLRD-IADRFNVDHDAVLDNVLYAR 195 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE---ESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE---ECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEee
Confidence 4567999999999999999998766322211 12356888 8888777776554 44555443210 00
Q ss_pred ccCC-CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 230 IIGE-DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 230 ~~~~-~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
.... ...++...+...+. .+--|||+|.+
T Consensus 196 ~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 196 AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 0011 22234444555553 45679999975
No 46
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.09 E-value=0.0016 Score=56.94 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=53.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~ 240 (261)
.-.++-|.|.+|+||||||..+... ....=...+|+ +....++.. ....++.......-... +.+++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi---~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~ 142 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFI---DAEHALDPV-----YARALGVNTDELLVSQPDNGEQALE 142 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEE---ECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHH
Confidence 3468888999999999999877652 21112367888 887776654 24455443221000012 5666767
Q ss_pred HHHHhccC-CeEEEEeecC
Q 046049 241 ILRDYLTD-KKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~~-kr~LlVlDDV 258 (261)
.+...++. +--+||+|.+
T Consensus 143 ~l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 143 IMELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHHHTTTCCSEEEEECT
T ss_pred HHHHHHhcCCCCEEEEeCh
Confidence 77666643 4458999975
No 47
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.05 E-value=0.00029 Score=54.06 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.8
Q ss_pred EEEEEEeCCCccHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADA 183 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v 183 (261)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 48
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.02 E-value=0.0017 Score=55.69 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=56.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccc----cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC---ccc-cCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFY----FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV---SVI-IGE 233 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~---~~~-~~~ 233 (261)
.-.++.|+|++|+||||||..+......... =...+|+ +....++...+.. ++..++..... .-. ...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi---~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI---DTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE---ESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEE---ECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeC
Confidence 3468999999999999999887653221111 1356888 8888787776653 45555543210 000 011
Q ss_pred -CHH---HHHHHHHHhcc--CCeEEEEeecC
Q 046049 234 -DYQ---LKKSILRDYLT--DKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~---~l~~~l~~~L~--~kr~LlVlDDV 258 (261)
+.+ ++...+...++ .+--+||+|.+
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 223 34455555653 45678999975
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.02 E-value=0.00055 Score=61.54 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 150 EELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 150 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|...+..+. ...+.++|++|+||||||+.+.+
T Consensus 39 ~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 39 KPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp SHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 45555565443 46788999999999999999988
No 50
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.01 E-value=0.0013 Score=57.35 Aligned_cols=87 Identities=13% Similarity=-0.023 Sum_probs=51.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~ 240 (261)
.-.++.|.|.+|+||||||..+... ....=...+|+ +....++.. .+..++.......-... +.+++.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi---d~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~ 131 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFI---DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALE 131 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEE---eCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHH
Confidence 4568999999999999999887652 21111357788 877777643 23455443221000011 4555555
Q ss_pred HHHHhcc-CCeEEEEeecC
Q 046049 241 ILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~-~kr~LlVlDDV 258 (261)
.+....+ .+--+||+|.+
T Consensus 132 ~~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 132 ICDALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHHHTCCSEEEEECG
T ss_pred HHHHHHhccCCCEEEEcCH
Confidence 5554442 34458899965
No 51
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.99 E-value=0.0033 Score=53.75 Aligned_cols=84 Identities=5% Similarity=0.017 Sum_probs=52.1
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcccc--cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHH-HH
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVKFY--FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLK-KS 240 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l-~~ 240 (261)
++-|.|++|+|||||+..+... .... =...+|| +-...++.. .+++++...+..--... +.++. ..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyI---d~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFY---DSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEE---ESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEE---eccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 7899999999999998877652 2222 1356888 877777753 36777765432100111 45555 33
Q ss_pred HHHHh--c-cCCeEEEEeecC
Q 046049 241 ILRDY--L-TDKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~--L-~~kr~LlVlDDV 258 (261)
.+... + .++--|||+|-|
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECS
T ss_pred HHHHHHHhhccCceEEEEecc
Confidence 33332 3 456789999976
No 52
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.98 E-value=0.00047 Score=54.00 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999773
No 53
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.96 E-value=0.0031 Score=53.87 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=56.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCccc---------cc-----ceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKF---------YF-----DCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV 227 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~ 227 (261)
.-.++-|.|.+|+||||||..+..+..... .. ...+|+ +....++...+.+ ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi---~~e~~~~~~~l~~-~~~~~g~~~~~ 172 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYI---DTEGTFRPERIMQ-MAEHAGIDGQT 172 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEE---ESSSCCCHHHHHH-HHHHHTCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEE---ECCCCCCHHHHHH-HHHHcCCCHHH
Confidence 457999999999999999988765322111 11 466888 8888887777664 34555543210
Q ss_pred ---c-cccCC-CHH---HHHHHHHHhcc--CCeEEEEeecC
Q 046049 228 ---S-VIIGE-DYQ---LKKSILRDYLT--DKKYFIVLDDV 258 (261)
Q Consensus 228 ---~-~~~~~-~~~---~l~~~l~~~L~--~kr~LlVlDDV 258 (261)
. .-... +.+ ++...+...+. .+--+||+|.+
T Consensus 173 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 173 VLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred HhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0 00011 333 34455666664 35568999975
No 54
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.95 E-value=0.0033 Score=54.40 Aligned_cols=40 Identities=18% Similarity=-0.043 Sum_probs=32.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.+...+..+. ..+.+.|+|++|+||||+|+.+.+
T Consensus 21 ~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 21 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp CHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 7777888888886543 235678999999999999999876
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.92 E-value=0.00069 Score=58.96 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+-|.++|++|+|||+||+.+.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4578899999999999999988
No 56
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.88 E-value=0.0014 Score=57.62 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=29.4
Q ss_pred hhHhHHHHHHHHhc----C------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE----G------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|.+++.. . .....-+.|+|++|+|||+||+.+.+
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56666666665521 1 11246788999999999999999977
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.88 E-value=0.0011 Score=53.57 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=28.3
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+...+.+..++... ....+.|+|++|+||||||+.+.+
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 34455555555443 356788999999999999999987
No 58
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.84 E-value=0.0033 Score=53.23 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+++++|++|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988754
No 59
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00059 Score=53.30 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 60
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0022 Score=57.17 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=30.0
Q ss_pred hhHhHHHHHHHHhc-----------CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE-----------GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+.+
T Consensus 177 l~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 177 LDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 66666666665421 112345688999999999999999988
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.82 E-value=0.0011 Score=55.96 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=30.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+.+++..+. ...+.++|++|+||||+|+.+.+
T Consensus 22 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 22 QDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence 6666777777765532 33388999999999999999877
No 62
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.82 E-value=0.00058 Score=52.37 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 63
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0024 Score=57.28 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=29.7
Q ss_pred hhHhHHHHHHHHh----c-------CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLI----E-------GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~----~-------~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.+++|.+.+. . +-...+=|-++|++|+|||+||+.+.+
T Consensus 214 l~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 6666666665432 1 113456677999999999999999988
No 64
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0016 Score=58.13 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=29.9
Q ss_pred hhHhHHHHHHHH----hcC-------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLL----IEG-------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L----~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.+++|.+.+ ... -...+=|-++|++|+|||+||+.+.+
T Consensus 186 l~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 666666666543 221 13356778999999999999999988
No 65
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.80 E-value=0.00072 Score=50.84 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=19.8
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|-|+|++|+|||++|+.+++.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999884
No 66
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.80 E-value=0.00068 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999997654
No 67
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00058 Score=52.84 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999877
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0026 Score=56.81 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+=|-++|++|+|||+||+.+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356788999999999999999988
No 69
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00078 Score=52.04 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 70
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.77 E-value=0.00074 Score=53.45 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998875
No 71
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.00085 Score=53.22 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|+|+.|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999998876
No 72
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.0007 Score=53.67 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 73
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.76 E-value=0.0006 Score=52.50 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 74
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.75 E-value=0.00095 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998866
No 75
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0021 Score=56.74 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+=+-++|++|+|||.||+.+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 45677999999999999999988
No 76
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.73 E-value=0.0084 Score=50.96 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=31.8
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..+..+.+++..+. ..+++-+.|++|+||||+|+.+.+
T Consensus 31 ~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 31 PAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 5666777888887543 346788889999999999999987
No 77
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.72 E-value=0.0064 Score=52.71 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCccccc----ceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC-------cc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF----DCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV-------SV 229 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~-------~~ 229 (261)
+.-.++.|+|++|+|||||+..+.......... ...+|+ +....+....+ ..+.+..+..... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i---~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~ 204 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI---DTENTFRPERI-REIAQNRGLDPDEVLKHIYVAR 204 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE---ESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEE---eCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEe
Confidence 346899999999999999999887632111111 234788 66555544443 3344444332110 00
Q ss_pred ccCC-CHHHHHHHHHHhcc------CCeEEEEeecC
Q 046049 230 IIGE-DYQLKKSILRDYLT------DKKYFIVLDDV 258 (261)
Q Consensus 230 ~~~~-~~~~l~~~l~~~L~------~kr~LlVlDDV 258 (261)
.... ...++...+...+. .+-=|||||.+
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 205 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 0111 23344455555553 45678999975
No 78
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.72 E-value=0.0024 Score=57.27 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=30.1
Q ss_pred hhHhHHHHHHHHhc----------CCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 145 FERGREELFDLLIE----------GPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 145 ~~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+.
T Consensus 139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56666666665521 0123467889999999999999999983
No 79
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.72 E-value=0.0012 Score=59.99 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.|+|++|+|||+||+.+.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 45588999999999999999987
No 80
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.71 E-value=0.00093 Score=52.33 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 81
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.71 E-value=0.0077 Score=53.77 Aligned_cols=40 Identities=20% Similarity=0.036 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHH
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
..--.++|.++|.... ....+|.++|.+|+||||++..+.
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 75 VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4455666777764321 347899999999999999888775
No 82
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.69 E-value=0.0082 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999887753
No 83
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.69 E-value=0.00088 Score=52.41 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++|+|+.|+|||||++.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 84
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.68 E-value=0.0011 Score=51.22 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999998865
No 85
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=51.81 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 86
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.64 E-value=0.0014 Score=52.17 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|+|++|+|||||++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999877
No 87
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.64 E-value=0.0024 Score=53.88 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.2
Q ss_pred hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+....++++.-++.. .....+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556666666666543 23467899999999999999999876
No 88
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.63 E-value=0.0011 Score=52.62 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999865
No 89
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.63 E-value=0.0008 Score=52.76 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 90
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.62 E-value=0.0013 Score=51.37 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998865
No 91
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.61 E-value=0.0022 Score=55.24 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988764
No 92
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.60 E-value=0.0011 Score=52.39 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+|+|+.|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 93
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.60 E-value=0.0014 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999877
No 94
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.59 E-value=0.0011 Score=51.71 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999998865
No 95
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.59 E-value=0.0018 Score=58.49 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=19.4
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+.++|++|+||||||+.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999988
No 96
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.59 E-value=0.001 Score=52.41 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 97
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.59 E-value=0.0011 Score=53.33 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998865
No 98
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.58 E-value=0.0012 Score=52.69 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999976
No 99
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.57 E-value=0.004 Score=59.73 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..+-|-++|++|+|||+||+.+.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999983
No 100
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.57 E-value=0.0012 Score=52.22 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 101
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.0023 Score=52.76 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=31.2
Q ss_pred hhHhHHHHHHHHhcCC---CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP---PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~---~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++...+.++..+..+. ....+|.|+|++|+||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5666666666655432 3467999999999999999999866
No 102
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.56 E-value=0.0039 Score=60.51 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=32.6
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..+..+++.|.... ..-+.++|++|+||||||+.+.+
T Consensus 175 r~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 8899999999887643 23467899999999999999876
No 103
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.56 E-value=0.0013 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 104
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.55 E-value=0.0013 Score=52.44 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999998854
No 105
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.001 Score=52.76 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 106
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.54 E-value=0.001 Score=52.88 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998864
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.53 E-value=0.0015 Score=55.75 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4568999999999999999998865
No 108
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0013 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 109
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.52 E-value=0.0088 Score=57.16 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=32.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..+..+++.|.... ..-+.++|++|+||||+|+.+.+
T Consensus 191 r~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 191 REKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 8888999999886543 34457999999999999998876
No 110
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.48 E-value=0.0015 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
..+|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999998
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.46 E-value=0.0011 Score=50.27 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..+.|+|+.|+|||||++.+++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 112
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.46 E-value=0.011 Score=52.10 Aligned_cols=58 Identities=3% Similarity=-0.035 Sum_probs=37.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP 223 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~ 223 (261)
.-.++.|+|++|+|||||+..+.-...... .-...+|+ +....+....+ ..+.+.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyi---d~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI---DTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE---ESSSCCCHHHH-HHHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEE---eCCCccCHHHH-HHHHHHcCC
Confidence 357999999999999999996642111111 22357788 76666666554 336666654
No 113
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0017 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 114
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.44 E-value=0.002 Score=49.44 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++++|+.|+|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998865
No 115
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.44 E-value=0.0019 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|+.|+||||+++.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 116
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.44 E-value=0.0012 Score=52.43 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 117
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.44 E-value=0.0017 Score=50.91 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 118
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.43 E-value=0.002 Score=52.82 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998865
No 119
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0017 Score=53.69 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999998865
No 120
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.41 E-value=0.0016 Score=49.89 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|+.|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.40 E-value=0.0014 Score=50.88 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999998875
No 122
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.39 E-value=0.002 Score=50.14 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.+.|++|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 123
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.39 E-value=0.0015 Score=52.71 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998865
No 124
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.39 E-value=0.0019 Score=50.53 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....|.|+|+.|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 125
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.002 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 126
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0041 Score=52.87 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=28.4
Q ss_pred hhHhHHHHHHHHhcCC---------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP---------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~---------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.....++|.+.+.... ....+++|+|+.|+||||+++.+..
T Consensus 73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4444555555553211 2457999999999999999998854
No 127
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.37 E-value=0.0019 Score=55.29 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=30.1
Q ss_pred hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+..++.. .......+.|+|++|+|||+||+.+.+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 55556666666643 123345688999999999999999977
No 128
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.37 E-value=0.0018 Score=53.45 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
..+|+|+|+.|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 129
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.37 E-value=0.0022 Score=55.15 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+.++|++|+||||||+.+.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356789999999999999999987
No 130
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.36 E-value=0.0022 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 131
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.34 E-value=0.0021 Score=50.92 Aligned_cols=23 Identities=13% Similarity=-0.126 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0008 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|-|+|++|+|||++|+.+++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3679999999999999999884
No 133
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.33 E-value=0.0022 Score=53.16 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 134
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.33 E-value=0.0019 Score=49.89 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=19.4
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 135
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.32 E-value=0.0014 Score=51.64 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 136
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0014 Score=50.97 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=19.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 137
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.32 E-value=0.0057 Score=52.40 Aligned_cols=25 Identities=4% Similarity=-0.020 Sum_probs=22.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|.|+.|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998865
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.31 E-value=0.014 Score=52.01 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.....++|.++|.... ....+|.++|++|+||||++..+..
T Consensus 72 ~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 72 ISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp HHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455566666664321 2468999999999999999887753
No 139
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.31 E-value=0.0022 Score=50.38 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 140
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.31 E-value=0.0025 Score=51.17 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|++|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999865
No 141
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.0035 Score=60.41 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.|+|++|+||||||+.+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45689999999999999999988
No 142
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.31 E-value=0.0092 Score=53.85 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCC------
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPP------ 224 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~------ 224 (261)
.++.|..- .+-.-++|+|..|+|||+|++.+.++. .+.+-++++++ -+.... ...++..++.+.-...
T Consensus 155 vID~l~pi-gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~---~iGER~rEv~e~~~~~~~~~~l~~~~l~~ 229 (498)
T 1fx0_B 155 VVNLLAPY-RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFG---GVGERTREGNDLYMEMKESGVINEQNIAE 229 (498)
T ss_dssp THHHHSCC-CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEE---EESCCSHHHHHHHHHHHHTTSSCSSTTCC
T ss_pred Eeeeeccc-ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEE---EcccCcHHHHHHHHhhhcccccccccccc
Confidence 34445432 234678999999999999998887631 23345777888 777654 4566777776643222
Q ss_pred -CCC--ccccCC------CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 225 -SRV--SVIIGE------DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 225 -~~~--~~~~~~------~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
... ....+. -.....-.+.++++ ++..||++||+
T Consensus 230 ~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 230 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 100 000000 12233344566765 58999999997
No 143
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0018 Score=54.67 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+.++|++|+|||+||+.+.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788899999999999999988
No 144
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.29 E-value=0.0022 Score=52.49 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999865
No 145
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.28 E-value=0.0022 Score=52.04 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0037 Score=53.64 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=31.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+..++.... ...+.++|++|+||||+|+.+.+
T Consensus 42 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 6667778888876543 22388999999999999999987
No 147
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.28 E-value=0.0012 Score=53.74 Aligned_cols=24 Identities=13% Similarity=-0.205 Sum_probs=19.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.++.|.|..|+||||++..+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH
Confidence 357899999999999998876654
No 148
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0021 Score=50.17 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 149
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.28 E-value=0.022 Score=48.78 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++..+.+...+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 7 ~~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp GHHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 4455666777665442 345688999999999999998865
No 150
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0074 Score=53.61 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHh----cC-------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLI----EG-------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++.+++|.+.+. .. -...+=|-++|++|+|||.||+.+.+
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 6666666655442 11 13346688999999999999999998
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.27 E-value=0.0061 Score=51.82 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=22.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999998876
No 152
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.27 E-value=0.0049 Score=53.49 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445678999999999999999987753
No 153
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.27 E-value=0.0023 Score=52.54 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999975
No 154
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.26 E-value=0.0043 Score=50.87 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998865
No 155
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.26 E-value=0.0024 Score=51.64 Aligned_cols=24 Identities=4% Similarity=0.054 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999876
No 156
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.25 E-value=0.0053 Score=55.58 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.--.+.|.++|.... ....+++|+|.+|+|||||++.+..
T Consensus 268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 4445556666664321 3457999999999999999998854
No 157
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.25 E-value=0.0012 Score=52.48 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=19.3
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999998865
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.24 E-value=0.0024 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.-.+++|+|++|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34799999999999999999876
No 159
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0054 Score=53.37 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHhcCC---------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP---------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~---------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.--.++|.+.|.... ....+++|+|+.|+||||+++.+..
T Consensus 130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 4555556666664321 2457999999999999999998854
No 160
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.02 Score=48.60 Aligned_cols=35 Identities=9% Similarity=-0.160 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++.|...+..+. .+.+-++|++|+||||+|+.+.+
T Consensus 6 ~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 6 LETLKRIIEKSE--GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence 445555555443 67889999999999999999866
No 161
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.24 E-value=0.0023 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999998863
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.24 E-value=0.0024 Score=50.82 Aligned_cols=24 Identities=4% Similarity=0.151 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999876
No 163
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.24 E-value=0.0022 Score=48.92 Aligned_cols=21 Identities=0% Similarity=-0.126 Sum_probs=19.4
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 164
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.23 E-value=0.015 Score=51.68 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=20.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|+|++|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999887754
No 165
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.23 E-value=0.0058 Score=48.92 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=27.1
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...+.+-..+.. ....+|.|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444444433 34789999999999999999887653
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.23 E-value=0.0018 Score=49.62 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 167
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.0028 Score=52.18 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998866
No 168
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.21 E-value=0.0025 Score=49.46 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+++|+|+.|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 169
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.21 E-value=0.0033 Score=49.73 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998876
No 170
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.21 E-value=0.0071 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|+|++|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999887754
No 171
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0022 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=19.0
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+++|+|+.|+|||||.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998865
No 172
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0017 Score=50.42 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998865
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.20 E-value=0.0026 Score=50.29 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 174
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.19 E-value=0.0028 Score=50.33 Aligned_cols=23 Identities=0% Similarity=-0.136 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 175
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.19 E-value=0.0094 Score=53.59 Aligned_cols=91 Identities=10% Similarity=0.131 Sum_probs=48.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhC--------CCCCCccccCCC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVM--------PPSRVSVIIGED 234 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~--------~~~~~~~~~~~~ 234 (261)
..++|+|.+|+|||||++.+..+... .+-+.++++ .+.+.. ...+++.++...-. ....++.....-
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~---~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFA---GVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEE---EESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEe---eeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 35889999999999999988763221 122445666 665543 33455555543210 001100000000
Q ss_pred HHHHHHHHHHhc---cCCeEEEEeecC
Q 046049 235 YQLKKSILRDYL---TDKKYFIVLDDV 258 (261)
Q Consensus 235 ~~~l~~~l~~~L---~~kr~LlVlDDV 258 (261)
.....-.+.+++ ++++.||++||+
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 111112344554 578999999997
No 176
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.18 E-value=0.0033 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998863
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.18 E-value=0.0032 Score=50.84 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.+||.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.17 E-value=0.0018 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=16.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.17 E-value=0.0061 Score=51.87 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=28.7
Q ss_pred hhHhHHHHHHHHhcC------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEG------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..-.++|.+.|... .....+|+|+|++|+||||++..+..
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 344455555555332 13468999999999999999987754
No 180
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.15 E-value=0.0025 Score=52.37 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.6
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
+.|+|++|+|||||++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999873
No 181
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.15 E-value=0.019 Score=51.25 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=29.1
Q ss_pred hhHhHHHHHHHHhcC------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEG------PPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~------~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...-.++|.++|... +.+..+|.++|.+|+||||++..+..
T Consensus 76 ~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 76 IKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHH
Confidence 445556666665431 12478999999999999998877753
No 182
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.15 E-value=0.0024 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998864
No 183
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.15 E-value=0.0025 Score=53.37 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=19.2
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
+.++|++|+|||||++.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999987
No 184
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.14 E-value=0.0035 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 185
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.14 E-value=0.0028 Score=51.91 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 186
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.14 E-value=0.0019 Score=52.34 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=16.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999988
No 187
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.14 E-value=0.0027 Score=52.79 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999965
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.0053 Score=48.98 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=26.7
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+.+...+.. .+..+|+|+|.+|+|||||+..+..
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 334444444432 2478999999999999999988765
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.12 E-value=0.0031 Score=50.01 Aligned_cols=23 Identities=0% Similarity=-0.286 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.11 E-value=0.0031 Score=49.38 Aligned_cols=21 Identities=5% Similarity=-0.187 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 191
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.11 E-value=0.0013 Score=57.62 Aligned_cols=34 Identities=15% Similarity=-0.036 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++++.+..-. .-..++|+|++|+|||||++.+.+
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH
Confidence 3455554332 346899999999999999998865
No 192
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.11 E-value=0.0029 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999865
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.10 E-value=0.0035 Score=48.57 Aligned_cols=23 Identities=13% Similarity=-0.099 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 194
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.10 E-value=0.003 Score=51.82 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 195
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.10 E-value=0.0034 Score=53.64 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADA 183 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v 183 (261)
.+.+||+|.|-||+||||.+-.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHH
Confidence 35799999999999999977655
No 196
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.09 E-value=0.003 Score=52.34 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999864
No 197
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.09 E-value=0.0033 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 198
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.08 E-value=0.0039 Score=49.77 Aligned_cols=23 Identities=4% Similarity=-0.139 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998866
No 199
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.06 E-value=0.0034 Score=51.51 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999865
No 200
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.06 E-value=0.0032 Score=50.82 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 201
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.05 E-value=0.0032 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999965
No 202
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.05 E-value=0.0033 Score=51.18 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 203
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.04 E-value=0.0032 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999865
No 204
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.04 E-value=0.0033 Score=50.45 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998866
No 205
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.04 E-value=0.0068 Score=54.49 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=59.0
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCC------
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPP------ 224 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~------ 224 (261)
.++.|..- .+-.-++|+|..|+|||+|++.+.++. .+.+-+.++++ -+.... ...++++++.+.-...
T Consensus 143 ~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~---~iGER~rEv~e~~~~~~~~~~l~~~~~~~ 217 (482)
T 2ck3_D 143 VVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFA---GVGERTREGNDLYHEMIESGVINLKDATS 217 (482)
T ss_dssp HHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEE---EESCCHHHHHHHHHHHHHHTSSCSSSSCC
T ss_pred EEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEE---ECCCcchHHHHHHHHhhhccccccccCCc
Confidence 44555332 124678999999999999998887632 22344566777 777654 3466777776653222
Q ss_pred CCC--ccccCCC------HHHHHHHHHHhc---cCCeEEEEeecC
Q 046049 225 SRV--SVIIGED------YQLKKSILRDYL---TDKKYFIVLDDV 258 (261)
Q Consensus 225 ~~~--~~~~~~~------~~~l~~~l~~~L---~~kr~LlVlDDV 258 (261)
... ....+.. .....-.+.+++ .++..||++||+
T Consensus 218 rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 218 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 100 0000111 112222344555 468999999997
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.03 E-value=0.0051 Score=55.49 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=32.1
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.++..|.... ..-+.++|++|+|||++|+.+.+
T Consensus 185 r~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 8889999999987643 23456899999999999999876
No 207
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.02 E-value=0.0034 Score=51.73 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999965
No 208
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.02 E-value=0.0036 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.01 E-value=0.0036 Score=49.33 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 210
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.00 E-value=0.0029 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.98 E-value=0.0038 Score=49.80 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=18.8
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998855
No 212
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.98 E-value=0.0036 Score=51.90 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 213
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.98 E-value=0.0091 Score=51.75 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=28.0
Q ss_pred hHhHHHHHHHHhc--CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIE--GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~--~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+.-.+.+++.+.. .......|.|+|++|+||||+++.+..
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445555555532 123466799999999999999997765
No 214
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.97 E-value=0.005 Score=52.21 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=28.7
Q ss_pred hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..+..+..++.. .......+.|+|++|+||||||+.+++
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 45555555555532 112345688999999999999999987
No 215
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.97 E-value=0.0037 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.108 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 216
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.97 E-value=0.0033 Score=50.56 Aligned_cols=23 Identities=9% Similarity=-0.247 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998876
No 217
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.96 E-value=0.0037 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999965
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.0064 Score=52.25 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=28.7
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.|...+..+. +..+.++|++|+||||+|+.+..
T Consensus 30 ~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3445566666665543 33388999999999999998876
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.94 E-value=0.0043 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-+-|+|++|+|||+||+.+++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 45679999999999999999884
No 220
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.0038 Score=53.70 Aligned_cols=40 Identities=10% Similarity=-0.103 Sum_probs=27.7
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+...+.+..++........ +.|+|+.|+||||+++.+..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHH
T ss_pred CHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 45556666666522222233 89999999999999998765
No 221
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.93 E-value=0.0036 Score=52.25 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.5
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
+.|+|++|+|||||++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999873
No 222
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.92 E-value=0.006 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+.++|++|+|||++|+.+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999987
No 223
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.92 E-value=0.0043 Score=49.00 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=19.7
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998866
No 224
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.92 E-value=0.004 Score=51.38 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 225
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.91 E-value=0.004 Score=52.32 Aligned_cols=23 Identities=9% Similarity=-0.216 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999965
No 226
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.91 E-value=0.004 Score=51.85 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999865
No 227
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.91 E-value=0.0043 Score=49.52 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=18.9
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 228
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.88 E-value=0.0042 Score=51.37 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 229
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.87 E-value=0.0082 Score=47.99 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=29.0
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..-...+..++..-+ +-.-+.|+|++|+||||+|..+.+
T Consensus 41 ~~~f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 41 FITFLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHH
Confidence 4444666677765433 334689999999999999888776
No 230
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0037 Score=51.64 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.83 E-value=0.0054 Score=50.94 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 357999999999999999998754
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.82 E-value=0.0089 Score=53.66 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+++++..+....+-+-++|++|+|||+||+.+.+
T Consensus 49 l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 49 CGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3345555555433345678999999999999999987
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.80 E-value=0.0048 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+++|+|+.|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 234
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.79 E-value=0.0046 Score=51.92 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-+.++|++|+|||++|+.+.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35677999999999999999987
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.78 E-value=0.0052 Score=50.20 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 236
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.76 E-value=0.0047 Score=49.52 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 237
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.75 E-value=0.0055 Score=52.09 Aligned_cols=24 Identities=4% Similarity=0.097 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999999998864
No 238
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.73 E-value=0.033 Score=48.00 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=33.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS 220 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~ 220 (261)
.-.++.|.|.+|+||||||..+..+... +=...+|+ + -.-+...+...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~f---S--lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVF---S--LEMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEE---E--SSSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEE---e--CCCCHHHHHHHHHHH
Confidence 3468889999999999999888653221 11234555 3 445566676666544
No 239
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.71 E-value=0.005 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+|+|.|+.|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998876
No 240
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.70 E-value=0.012 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999875
No 241
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.69 E-value=0.0061 Score=52.56 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.68 E-value=0.0063 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999999998764
No 243
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.68 E-value=0.011 Score=47.93 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-..|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.68 E-value=0.0063 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.++.|+|++|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.67 E-value=0.0063 Score=48.60 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=18.9
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 246
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.67 E-value=0.0058 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 247
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.66 E-value=0.0097 Score=45.96 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=24.5
Q ss_pred HhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 156 LIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 156 L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...+.....|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred HhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 3333345678999999999999999998764
No 248
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0063 Score=49.43 Aligned_cols=25 Identities=12% Similarity=-0.087 Sum_probs=21.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.64 E-value=0.0068 Score=51.04 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.++|++|+||||+|+.+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 46899999999999999999987
No 250
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.63 E-value=0.01 Score=47.00 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=43.4
Q ss_pred EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKSILR 243 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~ 243 (261)
.|+|=|..|+||||.++.+.+ ..+.+-...+.. .-+........++.++..-........-+-. +..+....+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~t---reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~ 76 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILK---REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIK 76 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEE---ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEE---ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999987 443332233333 3233333344444444332211100000001 3344455666
Q ss_pred HhccCCeEEEEee
Q 046049 244 DYLTDKKYFIVLD 256 (261)
Q Consensus 244 ~~L~~kr~LlVlD 256 (261)
..|...+ .+|.|
T Consensus 77 ~~L~~g~-~Vi~D 88 (197)
T 3hjn_A 77 QYLSEGY-AVLLD 88 (197)
T ss_dssp HHHTTTC-EEEEE
T ss_pred HHHHCCC-eEEec
Confidence 7776543 45555
No 251
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.63 E-value=0.0069 Score=50.57 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
No 252
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.62 E-value=0.0064 Score=49.01 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=19.1
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|.|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998866
No 253
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.62 E-value=0.0077 Score=53.41 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+.+.|..-.....+++|+|+.|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 33344433223467999999999999999999976
No 254
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.62 E-value=0.0048 Score=52.53 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999865
No 255
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.61 E-value=0.0068 Score=52.73 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36899999999999999999975
No 256
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.59 E-value=0.0066 Score=51.26 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999976
No 257
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.58 E-value=0.0064 Score=48.64 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=19.2
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998876
No 258
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.55 E-value=0.013 Score=44.46 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998764
No 259
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.54 E-value=0.0074 Score=50.75 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 260
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.51 E-value=0.014 Score=50.22 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
+++-+...-....+++|+|++|+|||||.+.+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444443333457899999999999999999886
No 261
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.49 E-value=0.0071 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 262
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.47 E-value=0.0078 Score=52.45 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999875
No 263
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.46 E-value=0.0081 Score=48.68 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998866
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.46 E-value=0.0073 Score=46.75 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=19.5
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988763
No 265
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.45 E-value=0.0081 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999975
No 266
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.44 E-value=0.0088 Score=51.08 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999853
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.42 E-value=0.0087 Score=51.23 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=20.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 268
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.40 E-value=0.011 Score=50.91 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|+|+.|+|||||+..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 269
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.39 E-value=0.0041 Score=52.47 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=18.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 270
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.39 E-value=0.0098 Score=48.77 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
...++.+.|.||+||||++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 46889999999999999999886
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.39 E-value=0.0092 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|++|+|||||++.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999998865
No 272
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.38 E-value=0.0093 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.041 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.++.|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999988764
No 273
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.38 E-value=0.0088 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.033 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46899999999999999999975
No 274
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.38 E-value=0.011 Score=44.07 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 275
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.37 E-value=0.0088 Score=52.43 Aligned_cols=23 Identities=9% Similarity=0.002 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 36899999999999999999975
No 276
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.36 E-value=0.012 Score=52.61 Aligned_cols=41 Identities=27% Similarity=0.194 Sum_probs=29.2
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.....++|.+++.... ....+|+|+|.+|+||||++..+..
T Consensus 74 ~~~~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 74 IKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445566666664331 2356999999999999999987755
No 277
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.35 E-value=0.01 Score=45.83 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=19.0
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.+.+|+|+.|+|||||...++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999999884
No 278
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.35 E-value=0.009 Score=52.03 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999975
No 279
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.33 E-value=0.022 Score=49.07 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049 151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.+..-+.....+..+|+|+|.+|+|||||+..+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHH
Confidence 3343333333457899999999999999998875
No 280
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.32 E-value=0.011 Score=44.24 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998764
No 281
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.31 E-value=0.0094 Score=52.12 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999975
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.30 E-value=0.043 Score=57.47 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=54.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCcccc-CCCHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVII-GEDYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~-~~~~~~l~~ 240 (261)
.-+.+-|+|++|+|||+||..+... ...+=...+|+ +....++... ++.++.+...-.-. ....++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi---~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFI---DAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEE---CTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---EcccccCHHH-----HHHcCCCchhceeecCChHHHHHH
Confidence 4578999999999999999988662 22221356788 8888877665 44554332210000 113445555
Q ss_pred HHHHhcc-CCeEEEEeecC
Q 046049 241 ILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~-~kr~LlVlDDV 258 (261)
.++...+ .+--+||+|.+
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCG
T ss_pred HHHHHHhcCCCCEEEEcCh
Confidence 5555543 45679999986
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.30 E-value=0.01 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999876
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.29 E-value=0.021 Score=51.92 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=28.5
Q ss_pred hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHH
Q 046049 145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.....++|.++|.... .+..+|+|+|.+|+||||++..+.
T Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 76 QHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp HHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4455566667664421 346799999999999999998776
No 285
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.29 E-value=0.0091 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-+-|+|++|+|||++|+.+++.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 45679999999999999999873
No 286
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.29 E-value=0.0097 Score=52.04 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999875
No 287
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.28 E-value=0.013 Score=45.08 Aligned_cols=24 Identities=4% Similarity=0.008 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998774
No 288
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.28 E-value=0.014 Score=55.89 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=32.3
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++..++.++..|.... ..-+-++|++|+|||++|+.+.+
T Consensus 185 ~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 8899999999987643 23367999999999999998876
No 289
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.27 E-value=0.0081 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 36899999999999999999975
No 290
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.26 E-value=0.0041 Score=51.37 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=18.7
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
+.++|++|+|||+||+.+.+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999987
No 291
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.24 E-value=0.01 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...++|+|+.|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998854
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.24 E-value=0.012 Score=49.77 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+++|+|.+|+||||++..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988754
No 293
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.012 Score=47.82 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 294
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.22 E-value=0.0098 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.22 E-value=0.011 Score=44.39 Aligned_cols=24 Identities=0% Similarity=-0.021 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 296
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.18 E-value=0.0073 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999975
No 297
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.14 E-value=0.013 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988764
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.11 E-value=0.013 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.++|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999988764
No 299
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.09 E-value=0.012 Score=51.67 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999975
No 300
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.08 E-value=0.023 Score=47.20 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=29.5
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-..-+..||....++..-|.++|++|+|||++|..+.+
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 334456777766534456699999999999999998876
No 301
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.08 E-value=0.02 Score=43.52 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 302
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.06 E-value=0.041 Score=45.34 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=30.1
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
..+.++.+.+.....+...|+++|.+|+|||||...+....
T Consensus 20 ~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445555555544456789999999999999999987643
No 303
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.06 E-value=0.11 Score=46.45 Aligned_cols=52 Identities=21% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIK 219 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~ 219 (261)
..-.++.|.|.+|+||||||..+..+....+ ...+|+ +.. -+...+...++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~f---SlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLH---SLE--MGKKENIKRLIV 246 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEE---CSS--SCTTHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEE---ECC--CCHHHHHHHHHH
Confidence 3457899999999999999988766322221 245566 443 334445554443
No 304
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.05 E-value=0.041 Score=45.52 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=30.5
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
....+.+++..+.........|.++|.+|+|||||...+....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 21 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344445555555444456788999999999999999988653
No 305
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.05 E-value=0.017 Score=43.46 Aligned_cols=25 Identities=16% Similarity=-0.005 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999988764
No 306
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.04 E-value=0.014 Score=49.73 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999876
No 307
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.04 E-value=0.046 Score=46.48 Aligned_cols=53 Identities=21% Similarity=0.120 Sum_probs=35.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS 220 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~ 220 (261)
..-.++.|.|.+|+||||||..+..+..... ...+|+ +.. -+...+...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~---slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLH---SLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEE---ESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEE---ECC--CCHHHHHHHHHHH
Confidence 3457899999999999999988765322222 456666 543 4566666666554
No 308
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.04 E-value=0.014 Score=45.21 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.++|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 309
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.03 E-value=0.035 Score=49.79 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=26.5
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+..+...+...+ ..+.|.|.+|+||||++..+..
T Consensus 31 ~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 334444555554433 3899999999999999988766
No 310
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.02 E-value=0.11 Score=45.53 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 150 EELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 150 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-++++.|..-. .-.-++|+|.+|+|||+|++.+.+
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 35566665432 245789999999999999988876
No 311
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.015 Score=43.78 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988764
No 312
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.014 Score=45.28 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=22.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568899999999999999988764
No 313
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.97 E-value=0.011 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.++|++|+|||++|+.+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999987
No 314
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.97 E-value=0.018 Score=43.22 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-|.|+|.+|+|||||...+.++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999988764
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.95 E-value=0.015 Score=43.70 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=19.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
--|.++|.+|+|||||...+.++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999888764
No 316
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.94 E-value=0.02 Score=43.12 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=19.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-|.|+|.+|+|||||...+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998854
No 317
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.93 E-value=0.014 Score=43.86 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=18.9
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|.++|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998865
No 318
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.93 E-value=0.014 Score=50.92 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=20.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999998854
No 319
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.93 E-value=0.025 Score=44.34 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|+++|.+|+|||||...+.++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988753
No 320
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.93 E-value=0.016 Score=44.44 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999998764
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.93 E-value=0.015 Score=43.72 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.--|.|+|.+|+|||||...+.++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999988764
No 322
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.93 E-value=0.015 Score=43.44 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
--|.|+|.+|+|||||...+.++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999888654
No 323
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.91 E-value=0.034 Score=44.59 Aligned_cols=23 Identities=9% Similarity=-0.155 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..|.|-|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 324
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.91 E-value=0.028 Score=50.79 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=48.1
Q ss_pred eEEEEEEeCCCccHHHHH-HHHHcCCCcccccc-eeeEEecccccCCCC-HHHHHHHHHHHhCCC--------CCCcccc
Q 046049 163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFD-CHAWVKNLSVSIAYD-FGKILDDIIKSVMPP--------SRVSVII 231 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~--------~~~~~~~ 231 (261)
-.-++|+|..|+|||+|| ..+.+.. . -+ .++++ -+.+..+ ..++.+++...-... .+++...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~---~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~ 235 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYV---AIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATL 235 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEE---EESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGG
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEE---EcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHH
Confidence 356789999999999995 5777743 2 34 34666 6665533 344555544321110 1100000
Q ss_pred CCCHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 232 GEDYQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 232 ~~~~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
..-.....-.+.+++ .++..||++||+
T Consensus 236 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 236 QYLAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp TTHHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 001112222334444 589999999996
No 325
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.90 E-value=0.017 Score=50.00 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=22.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..+|+|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999998864
No 326
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.88 E-value=0.013 Score=49.73 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999875
No 327
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.88 E-value=0.015 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.++.|.|++|+|||||+..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877654
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.88 E-value=0.013 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 329
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.87 E-value=0.024 Score=51.25 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=49.5
Q ss_pred eEEEEEEeCCCccHHHHH-HHHHcCCCcccccce-eeEEecccccCCC-CHHHHHHHHHHHhCCCCCC--ccccCC-CH-
Q 046049 163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFDC-HAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRV--SVIIGE-DY- 235 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~-~~- 235 (261)
-.-++|+|..|+|||+|| ..+.+.. .-+. ++++ -+.+.. ...++.+++.+.-...... ....+. ..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~---~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~ 247 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYV---AIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL 247 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEE---EESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEE---EcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence 356889999999999995 5777742 2443 4666 666553 3456666665421111100 000011 01
Q ss_pred ----HHHHHHHHHhc--cCCeEEEEeecC
Q 046049 236 ----QLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 236 ----~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
....-.+.+++ .++..||++||+
T Consensus 248 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 248 QYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11122344555 579999999996
No 330
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.86 E-value=0.017 Score=44.57 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 331
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.02 Score=43.52 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....-|.|+|.+|+|||||...+..+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 44677899999999999999998764
No 332
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.84 E-value=0.014 Score=53.72 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...++.++|++|+||||||+.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 333
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.84 E-value=0.011 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
+...|.|.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998766
No 334
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.84 E-value=0.079 Score=47.40 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=32.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDII 218 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~ 218 (261)
.-.++.|.|.+|+|||||+..+..+..... =..++|+ +. .-+...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~---s~--E~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIF---SL--EMSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEE---ES--SSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEE---EC--CCCHHHHHHHHH
Confidence 456899999999999999998866322111 1245566 43 334455555543
No 335
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.84 E-value=0.017 Score=43.41 Aligned_cols=24 Identities=4% Similarity=0.203 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.--|.|+|.+|+|||||...+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988754
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.80 E-value=0.017 Score=50.24 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999998754
No 337
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.80 E-value=0.015 Score=44.93 Aligned_cols=23 Identities=4% Similarity=-0.302 Sum_probs=20.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45788999999999999987765
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.79 E-value=0.017 Score=43.86 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999988754
No 339
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.79 E-value=0.023 Score=48.09 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
+++|.+.+.+ .+++++|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 5566666532 588999999999999999987
No 340
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.78 E-value=0.018 Score=48.54 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999998876643
No 341
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.78 E-value=0.02 Score=44.36 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999998764
No 342
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.77 E-value=0.022 Score=43.53 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999988754
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.76 E-value=0.021 Score=44.11 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
...|.|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578899999999999999987753
No 344
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.76 E-value=0.011 Score=46.66 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999988653
No 345
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.76 E-value=0.023 Score=43.18 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888664
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.76 E-value=0.021 Score=43.79 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
.--|.|+|.+|+|||||...+.++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468899999999999999987643
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.75 E-value=0.019 Score=44.12 Aligned_cols=22 Identities=0% Similarity=-0.040 Sum_probs=19.6
Q ss_pred EEEEEeCCCccHHHHHHHHHcC
Q 046049 165 VVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 348
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.74 E-value=0.022 Score=43.65 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 349
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.73 E-value=0.019 Score=43.18 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988753
No 350
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.73 E-value=0.018 Score=44.60 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=20.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.++
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999876554
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.73 E-value=0.02 Score=45.34 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....|.|+|++|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 352
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.70 E-value=0.014 Score=46.46 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 353
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.69 E-value=0.017 Score=49.93 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
-.+++|+|+.|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999874
No 354
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.69 E-value=0.015 Score=52.86 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=19.1
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
+.|+|++|+||||||+.+..
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 355
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.69 E-value=0.056 Score=48.80 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=50.3
Q ss_pred eEEEEEEeCCCccHHHHH-HHHHcCCCcccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-CHH
Q 046049 163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-DYQ 236 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~~~ 236 (261)
-.-++|+|..|+|||+|| ..+.+.. +-+ .++++ -+.+.. ...++.+++.+.-......- ...+. ...
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~---~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 234 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYV---AIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPL 234 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEE---EESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEE---ECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHH
Confidence 356789999999999995 5777732 234 34666 666553 34566666665322221100 00011 111
Q ss_pred H-----HHHHHHHhc--cCCeEEEEeecC
Q 046049 237 L-----KKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 237 ~-----l~~~l~~~L--~~kr~LlVlDDV 258 (261)
. ..-.+.+++ .++..||++||+
T Consensus 235 r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 235 LYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1 112344555 579999999996
No 356
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.68 E-value=0.02 Score=43.95 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999988764
No 357
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.68 E-value=0.034 Score=42.18 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999988765
No 358
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.68 E-value=0.019 Score=50.60 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999998865
No 359
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.68 E-value=0.021 Score=51.11 Aligned_cols=92 Identities=13% Similarity=0.199 Sum_probs=50.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcc-cccc-eeeEEecccccCC-CCHHHHHHHHHHHhCCCCCC--ccccCC-----
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVK-FYFD-CHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRV--SVIIGE----- 233 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~--~~~~~~----- 233 (261)
.-++|.|..|+|||+|+..+.+..... ++=+ .++++ -+... ....+++.++.+.-...... ....+.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~---~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFA---AIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEE---EEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEE---EecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 347889999999999999888754331 1111 45666 66654 34456666655431111000 000011
Q ss_pred -CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
-.....-.+.++++ ++..||++||+
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11112233566664 78999999996
No 360
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.66 E-value=0.019 Score=43.52 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
...-|.|+|.+|+|||||...+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678999999999999999987643
No 361
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.65 E-value=0.02 Score=44.53 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=20.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+++|.+|+|||||...+.++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999988763
No 362
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.64 E-value=0.021 Score=47.07 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=18.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999876643
No 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.63 E-value=0.021 Score=43.33 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=20.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-|.|+|..|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999988753
No 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.59 E-value=0.019 Score=43.01 Aligned_cols=20 Identities=5% Similarity=-0.185 Sum_probs=18.2
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
|.++|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998865
No 365
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.015 Score=52.29 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999866
No 366
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.59 E-value=0.017 Score=53.17 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+|.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347999999999999999999876
No 367
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.56 E-value=0.021 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3567889999999999999887654
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.55 E-value=0.021 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467889999999999999988764
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.53 E-value=0.015 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 370
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.53 E-value=0.022 Score=43.58 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.--|.++|.+|+|||||...+.++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999888754
No 371
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.53 E-value=0.022 Score=43.86 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 372
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.52 E-value=0.023 Score=48.04 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999998764
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.50 E-value=0.031 Score=42.09 Aligned_cols=24 Identities=17% Similarity=-0.089 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998654
No 374
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.50 E-value=0.018 Score=51.17 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=19.0
Q ss_pred EEEEeCCCccHHHHHHHHHc
Q 046049 166 VAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~ 185 (261)
++|+|+.|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999976
No 375
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.49 E-value=0.025 Score=47.30 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46889999999999999887653
No 376
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.48 E-value=0.022 Score=44.15 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....-|.|+|.+|+|||||...+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 377
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.48 E-value=0.036 Score=42.05 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 378
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.061 Score=41.37 Aligned_cols=25 Identities=16% Similarity=-0.104 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3578899999999999999998854
No 379
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.47 E-value=0.022 Score=44.44 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988654
No 380
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.47 E-value=0.018 Score=43.88 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.++|.+|+|||||...+.++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 381
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.46 E-value=0.021 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.46 E-value=0.023 Score=43.34 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 383
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.46 E-value=0.032 Score=50.71 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=26.9
Q ss_pred hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+..++.+...+..+ .-+-++|++|+|||+||+.+.+.
T Consensus 28 ~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 28 SHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 33445555555443 36789999999999999999883
No 384
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.46 E-value=0.023 Score=43.33 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999988764
No 385
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.45 E-value=0.024 Score=44.28 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.++|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3567889999999999999977663
No 386
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.024 Score=44.08 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|+|+|.+|+|||||...+..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999988764
No 387
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.44 E-value=0.02 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||++.+..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 388
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.42 E-value=0.016 Score=49.46 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=27.2
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+...+..+ .-+-++|++|+|||+||+.+.+
T Consensus 32 ~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 32 QKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 344455555555543 3577899999999999999877
No 389
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.41 E-value=0.088 Score=55.19 Aligned_cols=87 Identities=13% Similarity=-0.030 Sum_probs=54.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~ 240 (261)
.-.++-|.|++|+||||||..+.... ...=...+|+ +....++... ++.++.......-... +.+++.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyi---s~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~ 451 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFI---DAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEE---CTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEE---EcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHH
Confidence 45799999999999999999886632 2222367888 8777776532 4556554321100012 6666766
Q ss_pred HHHHhcc-CCeEEEEeecC
Q 046049 241 ILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~-~kr~LlVlDDV 258 (261)
.+....+ .+--+||+|-+
T Consensus 452 ~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 452 ICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCG
T ss_pred HHHHHHHhcCCcEEEECCH
Confidence 6665442 44568898864
No 390
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.022 Score=52.31 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 357999999999999999999875
No 391
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.39 E-value=0.026 Score=44.12 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999988764
No 392
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.025 Score=43.10 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999988764
No 393
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.38 E-value=0.013 Score=50.15 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=19.4
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-+-|+|++|+|||+||+.+.+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 388999999999999999987
No 394
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.38 E-value=0.023 Score=45.09 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 395
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.37 E-value=0.032 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999988764
No 396
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.37 E-value=0.044 Score=42.31 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=22.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
....-|.|+|..|+|||||...+.++.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345678999999999999999887643
No 397
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.36 E-value=0.075 Score=54.91 Aligned_cols=87 Identities=13% Similarity=-0.024 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~ 240 (261)
.-.++-|.|.+|+||||||..+.... ...=...+|+ +...+++.. .++.++.......-... +.+++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyi---s~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~ 451 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFI---DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALE 451 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEE---CTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEE---EccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHH
Confidence 45789999999999999998876532 2222467888 888777753 25556554321100112 5666666
Q ss_pred HHHHhcc-CCeEEEEeecC
Q 046049 241 ILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~-~kr~LlVlDDV 258 (261)
.+....+ .+--+||+|-+
T Consensus 452 ~l~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCS
T ss_pred HHHHHHHhcCCCEEEECCH
Confidence 6665543 34458899865
No 398
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.35 E-value=0.022 Score=52.23 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 399
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.34 E-value=0.02 Score=51.41 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=52.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccc--cceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFY--FDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE----- 233 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~----- 233 (261)
.-++|.|..|+|||+|+..+.++...... =+..+++ -+.... ...+++.++...-......- ...+.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~---~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFA---AMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEE---EEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEE---EccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 45678899999999999988775433211 1355666 666543 34566666664321111000 00011
Q ss_pred -CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 234 -DYQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 234 -~~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
-.....-.+.++++ ++..||++||+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11122233556664 69999999995
No 400
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.34 E-value=0.025 Score=43.46 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
...-|.|+|.+|+|||||...+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999987654
No 401
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.025 Score=44.03 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 402
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.32 E-value=0.026 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 403
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.31 E-value=0.027 Score=44.73 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..|.|.|+.|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.30 E-value=0.027 Score=44.56 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999988764
No 405
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.29 E-value=0.026 Score=43.72 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998775
No 406
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.29 E-value=0.024 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999998863
No 407
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.28 E-value=0.032 Score=43.24 Aligned_cols=27 Identities=7% Similarity=-0.165 Sum_probs=22.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
.....|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999987643
No 408
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.28 E-value=0.031 Score=44.10 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=20.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....|.|+|.+|+|||||...+..+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999988764
No 409
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.26 E-value=0.035 Score=47.06 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999988764
No 410
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.25 E-value=0.024 Score=46.11 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..-++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999998866
No 411
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.24 E-value=0.039 Score=43.38 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.--|.|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 457789999999999999888754
No 412
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.24 E-value=0.026 Score=43.92 Aligned_cols=24 Identities=4% Similarity=-0.218 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 466999999999999999998654
No 413
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.24 E-value=0.033 Score=45.16 Aligned_cols=23 Identities=9% Similarity=-0.171 Sum_probs=18.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-..|.|-|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 414
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.23 E-value=0.028 Score=44.04 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...-|.|+|.+|+|||||...+.++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567889999999999999988754
No 415
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.23 E-value=0.028 Score=44.28 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...-|.|+|.+|+|||||...+.+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999988654
No 416
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.22 E-value=0.033 Score=46.13 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988764
No 417
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.22 E-value=0.022 Score=50.92 Aligned_cols=92 Identities=14% Similarity=0.223 Sum_probs=50.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcc--------cccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCC--cccc
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVK--------FYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRV--SVII 231 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~ 231 (261)
.-++|.|..|+|||+|+..+.+..... ++=+ .++++ -+.... ...++..++.+.-...... ....
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~---~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFA---AMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEE---EEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEE---EecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 456888999999999999888754431 1111 45566 666543 3455666654421010000 0000
Q ss_pred CC-C-----HHHHHHHHHHhcc---CCeEEEEeecC
Q 046049 232 GE-D-----YQLKKSILRDYLT---DKKYFIVLDDV 258 (261)
Q Consensus 232 ~~-~-----~~~l~~~l~~~L~---~kr~LlVlDDV 258 (261)
+. . .....-.+.++++ ++..||++||+
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11 1 1122234566664 78999999996
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.22 E-value=0.037 Score=44.37 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.....|.|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998764
No 419
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.21 E-value=0.32 Score=43.97 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=34.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS 220 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~ 220 (261)
..-.++.|.|.+|+||||||..+..+.... +=...+|+ +. .-+...+...++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~---s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLA---ML--EESVEETAEDLIGL 293 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEE---ES--SSCHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEE---ec--cCCHHHHHHHHHHH
Confidence 345788999999999999998876532221 11245666 44 33456666665543
No 420
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.21 E-value=0.027 Score=50.02 Aligned_cols=24 Identities=4% Similarity=0.061 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999998865
No 421
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.20 E-value=0.028 Score=43.42 Aligned_cols=25 Identities=8% Similarity=0.099 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999988764
No 422
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.19 E-value=0.028 Score=44.01 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
....|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999874
No 423
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.19 E-value=0.028 Score=43.60 Aligned_cols=25 Identities=4% Similarity=-0.008 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4567889999999999999998765
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.18 E-value=0.028 Score=43.44 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999988764
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.18 E-value=0.028 Score=43.84 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=20.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.++
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999988764
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.17 E-value=0.026 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 427
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.17 E-value=0.036 Score=44.05 Aligned_cols=24 Identities=4% Similarity=-0.215 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|+|+||+|+||+|+|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999988755
No 428
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.15 E-value=0.029 Score=43.50 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567889999999999999988764
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.14 E-value=0.026 Score=50.37 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.-..++|+|+.|+|||||.+.+...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999873
No 430
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.14 E-value=0.03 Score=51.12 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.++|++|+||||+|+.+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999865
No 431
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.028 Score=43.55 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3567889999999999999988764
No 432
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.03 Score=43.22 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988764
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.10 E-value=0.052 Score=44.26 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...|.|.|+.|+||||+++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.10 E-value=0.029 Score=43.80 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4578899999999999999988754
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.09 E-value=0.03 Score=43.21 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999988754
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.027 Score=52.43 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46999999999999999999875
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.09 E-value=0.031 Score=43.82 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999988754
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.09 E-value=0.029 Score=48.69 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=20.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999864
No 439
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.06 E-value=0.042 Score=44.43 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
...-|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 46789999999999999999988743
No 440
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.06 E-value=0.036 Score=50.12 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHH-HHHHcCCCc----ccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCC
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFA-ADAFNNNHV----KFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPP 224 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~ 224 (261)
.++.|..-. +-.-++|+|..|+|||+|| ..+.+.... .++-+ .++++ -+.+.. ...++.+++.+.-...
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~---~IGeR~~Ev~~~~~~~~~~g~m~ 227 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYV---AIGQKRSTVAQLVKRLTDADAMK 227 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEE---EESCCHHHHHHHHHHHHHTTCGG
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEE---ECCCCcHHHHHHHHHHHhcCCcc
Confidence 344454321 2356789999999999995 566663221 12344 35677 776654 3456666665432111
Q ss_pred CCC--ccccCCC-HH-----HHHHHHHHhc--cCCeEEEEeecC
Q 046049 225 SRV--SVIIGED-YQ-----LKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 225 ~~~--~~~~~~~-~~-----~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
... ....+.. .. ...-.+.+++ .++..||++||+
T Consensus 228 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 100 0000110 11 1122344455 579999999996
No 441
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.027 Score=52.40 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|+.|+|||||++.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.05 E-value=0.031 Score=44.32 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=20.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467889999999999999988764
No 443
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.04 E-value=0.03 Score=43.72 Aligned_cols=21 Identities=10% Similarity=-0.113 Sum_probs=17.4
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 046049 164 SVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~ 184 (261)
.++.|+|+.|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999985443
No 444
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.033 Score=43.85 Aligned_cols=24 Identities=4% Similarity=-0.065 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.047 Score=42.27 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3467899999999999999988753
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.99 E-value=0.04 Score=41.46 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
..+..|+|+.|.||||+...++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3688999999999999988774
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.99 E-value=0.061 Score=43.09 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..|.|-|+.|+||||+++.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 448
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.98 E-value=0.032 Score=42.79 Aligned_cols=24 Identities=17% Similarity=-0.129 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|..|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999998764
No 449
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.98 E-value=0.03 Score=43.68 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 046049 163 LSVVAILDGIGFDMTAFAADAF 184 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~ 184 (261)
..-|.|+|.+|+|||||...+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998875
No 450
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.029 Score=42.85 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...-|.|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999998875
No 451
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.95 E-value=0.028 Score=43.65 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=20.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|..|+|||||...+.++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 452
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.91 E-value=0.029 Score=51.90 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999865
No 453
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.91 E-value=0.028 Score=49.88 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=18.9
Q ss_pred EEEEeCCCccHHHHHHHHHcC
Q 046049 166 VAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 166 i~IvG~gGiGKTtLa~~v~~~ 186 (261)
|+|+|..|+|||||.+.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999998764
No 454
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.88 E-value=0.036 Score=43.48 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=22.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...-|.|+|.+|+|||||...+.++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34677999999999999999988754
No 455
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.85 E-value=0.027 Score=50.32 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+-|.++|++|+||||+|+.+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 34588999999999999999987
No 456
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.035 Score=42.97 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+.++
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999988764
No 457
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.84 E-value=0.049 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
.+-+-++|++|+|||.||+.+.+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHH
Confidence 345679999999999999999983
No 458
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.84 E-value=0.037 Score=43.28 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999988764
No 459
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.84 E-value=0.034 Score=47.01 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
++++..++.. .+++|+|+.|+|||||.+.+..
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence 5566666632 4889999999999999999975
No 460
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.83 E-value=0.056 Score=41.62 Aligned_cols=25 Identities=16% Similarity=-0.088 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+..-|.|+|.+|+|||||...+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999988653
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.82 E-value=0.037 Score=43.54 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..--|.|+|.+|+|||||...+.++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999988754
No 462
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.81 E-value=0.036 Score=43.52 Aligned_cols=25 Identities=4% Similarity=0.193 Sum_probs=20.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999988754
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.78 E-value=0.032 Score=51.96 Aligned_cols=23 Identities=22% Similarity=-0.002 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46999999999999999999875
No 464
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.77 E-value=0.032 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999865
No 465
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.76 E-value=0.046 Score=44.21 Aligned_cols=24 Identities=8% Similarity=-0.191 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
....|.|.|+.|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 466
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.75 E-value=0.11 Score=46.98 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=49.7
Q ss_pred eEEEEEEeCCCccHHHHH-HHHHcCCCcccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-C--
Q 046049 163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-D-- 234 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~-- 234 (261)
-.-++|.|..|+|||+|+ ..+.+. .+-+ .++++ -+.+.. ...++.+++.+.-......- ...+. .
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~---~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~ 234 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYV---AIGQKASTISNVVRKLEEHGALANTIVVVATASESAAL 234 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEE---EESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEE---EecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHH
Confidence 356789999999999996 566663 1233 34677 777654 34566666554322211100 00011 0
Q ss_pred ---HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049 235 ---YQLKKSILRDYL--TDKKYFIVLDDV 258 (261)
Q Consensus 235 ---~~~l~~~l~~~L--~~kr~LlVlDDV 258 (261)
.....-.+.+++ +++..||++||+
T Consensus 235 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 235 QYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111112234444 589999999996
No 467
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.73 E-value=0.054 Score=45.77 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988764
No 468
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.73 E-value=0.041 Score=43.50 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 161 PRLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 161 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+...-|.|+|.+|+|||||...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 469
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.68 E-value=0.15 Score=55.04 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=34.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~ 222 (261)
+-+-++|++|+|||++|+.+.... ..+. .+.+ +.|...+...+++.+-..+.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~~-~~~i---nfsa~ts~~~~~~~i~~~~~ 1319 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLYD-VVGI---NFSKDTTTEHILSALHRHTN 1319 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSCE-EEEE---ECCTTCCHHHHHHHHHHHBC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCCc-eEEE---EeecCCCHHHHHHHHHHHhh
Confidence 467799999999999997776632 1222 2345 66666666666666555443
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.68 E-value=0.05 Score=43.27 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=19.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-|+|-|..|+||||+++.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999999887
No 471
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.64 E-value=0.04 Score=49.54 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 472
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.59 E-value=0.023 Score=43.56 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=11.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999887654
No 473
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.59 E-value=0.033 Score=51.81 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=26.9
Q ss_pred hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+..++.+...+..+ ..+.|+|++|+||||||+.+..
T Consensus 46 ~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 46 QEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred chhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 334444444444433 4889999999999999999987
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.57 E-value=0.051 Score=43.14 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
..-|.|+|.+|+|||||...+.++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 475
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.56 E-value=0.031 Score=43.18 Aligned_cols=25 Identities=16% Similarity=-0.126 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
..-|.|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999887643
No 476
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.54 E-value=0.021 Score=48.51 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+++|+|++|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 5899999999999999999865
No 477
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.51 E-value=0.06 Score=44.07 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999988754
No 478
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.50 E-value=0.04 Score=44.63 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=18.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
-.|.+.|.||+||||+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3477889999999999877765
No 479
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.49 E-value=0.044 Score=43.76 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999998764
No 480
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.48 E-value=0.033 Score=44.18 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNN 187 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 187 (261)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998754
No 481
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.45 E-value=0.11 Score=47.51 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCH-HHHHHHH
Q 046049 152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDF-GKILDDI 217 (261)
Q Consensus 152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~-~~il~~i 217 (261)
.++.|..- .+-.-++|.|..|+|||+|++.+.+.. +-+.++++ -+.+..+. .+++.++
T Consensus 217 vID~l~Pi-gkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~---~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQ-AKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYI---GCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCE-ETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEE---ECCSSSSHHHHHHHHT
T ss_pred hhhccCCc-ccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEE---EecccHHHHHHHHHHH
Confidence 44555332 124678999999999999999887632 23567788 77766554 4455543
No 482
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.43 E-value=0.042 Score=50.17 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEEEeCCCccHHHHHHHH
Q 046049 165 VVAILDGIGFDMTAFAADA 183 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v 183 (261)
+++|+|+.|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
No 483
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.43 E-value=0.054 Score=43.68 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=19.3
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHc
Q 046049 162 RLSVVAILDG-IGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~-gGiGKTtLa~~v~~ 185 (261)
..++|+|++. ||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 3578999965 99999999887643
No 484
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.42 E-value=0.045 Score=43.52 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=16.9
Q ss_pred EEEEE-eCCCccHHHHHHHHHc
Q 046049 165 VVAIL-DGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~Iv-G~gGiGKTtLa~~v~~ 185 (261)
+|+|+ +-||+||||+|..+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH
Confidence 67776 5699999999987754
No 485
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.41 E-value=0.03 Score=51.99 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999965
No 486
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.37 E-value=0.15 Score=52.80 Aligned_cols=87 Identities=13% Similarity=-0.020 Sum_probs=59.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCcccc-CCCHHHHHH
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVII-GEDYQLKKS 240 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~-~~~~~~l~~ 240 (261)
.-++|-|+|+.|+||||||.++.. ..+..=..++|+ ...+.+++.. ++.++.+.+.---. +...++..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i---~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~ 1499 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFI---DAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1499 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEE---CTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEE---ecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHH
Confidence 457999999999999999998876 344444678899 8888877654 77777765531000 124455555
Q ss_pred HHHHhcc-CCeEEEEeecC
Q 046049 241 ILRDYLT-DKKYFIVLDDV 258 (261)
Q Consensus 241 ~l~~~L~-~kr~LlVlDDV 258 (261)
.+...++ +.--+||+|-|
T Consensus 1500 ~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1500 ICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCS
T ss_pred HHHHHHHcCCCCEEEEccH
Confidence 5666664 45568888865
No 487
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.37 E-value=0.047 Score=49.68 Aligned_cols=24 Identities=0% Similarity=0.023 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.+.|+.|+||||+|+.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHH
Confidence 457899999999999999999977
No 488
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.35 E-value=0.043 Score=49.98 Aligned_cols=22 Identities=5% Similarity=-0.100 Sum_probs=19.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..++|+|+.|+|||||.+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999998875
No 489
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.32 E-value=0.092 Score=49.18 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=36.5
Q ss_pred HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHH-HHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHH
Q 046049 147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTA-FAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDII 218 (261)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~ 218 (261)
.+.+.+...|... .+.-|.||+|.|||+ ++..|+. .++. ..++.| +...+.....++..+.
T Consensus 193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv---~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLC---CAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEE---EESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEE---EcCchHHHHHHHHHHH
Confidence 3444555555432 366789999999997 5555554 2222 235666 6555555666666654
No 490
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.28 E-value=0.035 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 357999999999999999999965
No 491
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.23 E-value=0.049 Score=44.79 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=19.5
Q ss_pred CCeEEEEEEeC-CCccHHHHHHHHHc
Q 046049 161 PRLSVVAILDG-IGFDMTAFAADAFN 185 (261)
Q Consensus 161 ~~~~vi~IvG~-gGiGKTtLa~~v~~ 185 (261)
...++|+|++. ||+||||+|..+..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~ 50 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILAT 50 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 35789999754 99999999987754
No 492
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.20 E-value=0.038 Score=44.61 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.6
Q ss_pred EEEEEeCCCccHHHHHHHHHc
Q 046049 165 VVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 165 vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.|+|.|-||+||||+|..+..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 367789999999999987754
No 493
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.19 E-value=0.055 Score=50.00 Aligned_cols=24 Identities=8% Similarity=-0.130 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHc
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+|.|.|++|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 494
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.16 E-value=0.046 Score=45.37 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=19.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHcC
Q 046049 164 SVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999987653
No 495
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.16 E-value=0.05 Score=42.60 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=17.9
Q ss_pred EEEEEE-eCCCccHHHHHHHHHc
Q 046049 164 SVVAIL-DGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~Iv-G~gGiGKTtLa~~v~~ 185 (261)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 688888 5599999999987644
No 496
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.15 E-value=0.058 Score=44.13 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=19.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHc
Q 046049 164 SVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 164 ~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
.+|+|.|+.|+||||+|+.+-.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998765
No 497
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.15 E-value=0.049 Score=47.39 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049 162 RLSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 162 ~~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
+..+|+|+|.+|+|||||.+.+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999998764
No 498
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.10 E-value=0.067 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
...+.++|++|+|||+||+.+.+
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 499
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.10 E-value=0.087 Score=43.81 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHcC
Q 046049 163 LSVVAILDGIGFDMTAFAADAFNN 186 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~~ 186 (261)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999998764
No 500
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.08 E-value=0.063 Score=43.33 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHc
Q 046049 163 LSVVAILDGIGFDMTAFAADAFN 185 (261)
Q Consensus 163 ~~vi~IvG~gGiGKTtLa~~v~~ 185 (261)
..+|+|.|+.|+||||+|+.+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~ 36 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 47999999999999999998866
Done!