BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046050
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 184/654 (28%), Positives = 279/654 (42%), Gaps = 97/654 (14%)
Query: 59 VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQI 118
+KHL++ + G D + V+L+ L + NN +P+ L + ++L+ LDI+ N++
Sbjct: 177 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 119 TGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLT 178
+G+ S + + T L+ L +S+NQF PI P L+ +N+ EI
Sbjct: 233 SGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSG 288
Query: 179 PKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXX 238
L + LSG P F L + LS N GE P
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------------- 332
Query: 239 XXSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCS 298
+ +M + L +D+S N G +P + L ++S N +G I +
Sbjct: 333 ---MDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 299 LHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXX 358
L +LQ L L NN G I N + LV+L L N
Sbjct: 385 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN------------------ 425
Query: 359 XXXXDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
++SG IP LG+LS L D+ + N LEG IP L + L L L+ N+++G +
Sbjct: 426 ------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 419 PSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
PS S+ T ++ + LS NR +G IP WI +L +L+ L L
Sbjct: 480 PSGLSN--CTNLNW-------------------ISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 479 ANNNLEGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALG-EGNYDSAAP---TSEG 534
+NN+ G +P + N +GTIP+ ++K + N+ +
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN----TSYYYQGRILKI------MFGLD 584
AG + G +R E+ T+N TS Y G M LD
Sbjct: 579 GMKKECHGAGNLLEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 585 LSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644
+S N L+G IP +IG + + LNL HN++ G+IP L + LDLS N L G+IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 645 QLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYP 698
+ L L +++NNLSG +P+ +GQF TF + N LCG PL C P
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CDP 747
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 184/654 (28%), Positives = 279/654 (42%), Gaps = 97/654 (14%)
Query: 59 VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQI 118
+KHL++ + G D + V+L+ L + NN +P+ L + ++L+ LDI+ N++
Sbjct: 180 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 119 TGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLT 178
+G+ S + + T L+ L +S+NQF PI P L+ +N+ EI
Sbjct: 236 SGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSG 291
Query: 179 PKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXX 238
L + LSG P F L + LS N GE P
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------------- 335
Query: 239 XXSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCS 298
+ +M + L +D+S N G +P + L ++S N +G I +
Sbjct: 336 ---MDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 299 LHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXX 358
L +LQ L L NN G I N + LV+L L N
Sbjct: 388 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN------------------ 428
Query: 359 XXXXDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
++SG IP LG+LS L D+ + N LEG IP L + L L L+ N+++G +
Sbjct: 429 ------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 419 PSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
PS S+ T ++ + LS NR +G IP WI +L +L+ L L
Sbjct: 483 PSGLSN--CTNLNW-------------------ISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 479 ANNNLEGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALG-EGNYDSAAP---TSEG 534
+NN+ G +P + N +GTIP+ ++K + N+ +
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN----TSYYYQGRILKI------MFGLD 584
AG + G +R E+ T+N TS Y G M LD
Sbjct: 582 GMKKECHGAGNLLEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 585 LSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644
+S N L+G IP +IG + + LNL HN++ G+IP L + LDLS N L G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 645 QLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYP 698
+ L L +++NNLSG +P+ +GQF TF + N LCG PL C P
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CDP 750
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 118/308 (38%), Gaps = 73/308 (23%)
Query: 393 PIPANLCKLNFLTVLDLE-VNNISGSLPSCFSSWLLTQVH---LSRNKIEGQLEDVFGDI 448
PIP++L L +L L + +NN+ G +P + LTQ+H ++ + G + D I
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 449 --LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXXXXXXXX-XXXXXSHN 505
LVTLD SYN SG +P I L +L + N + G +P S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 506 NLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRT 565
L+G IP L A + + + SV F +
Sbjct: 185 RLTGKIPPTFANLNL-------------------------AFVDLSRNMLEGDASVLFGS 219
Query: 566 -KNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH 624
KNT + + K DL ++G + L+L +N + GT+P +
Sbjct: 220 DKNTQKIH---LAKNSLAFDLG----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 625 LSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGN 684
L + SL++S+N L G+IP + G F ++Y N
Sbjct: 267 LKFLHSLNVSFNNLCGEIP-------------------------QGGNLQRFDVSAYANN 301
Query: 685 SLLCGQPL 692
LCG PL
Sbjct: 302 KCLCGSPL 309
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 26/199 (13%)
Query: 316 NSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLG 375
N+L G I LT L L + +G IP+ N +SG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 376 NLSNLVDIIMPNNHLEGPIPANLCKLNFL-TVLDLEVNNISGSLPSCFSSWLLTQVHLSR 434
+L NLV I N + G IP + + L T + + N ++G +P F++ L V LSR
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 435 NKIEGQLEDVFGDILVT-------------------------LDLSYNRFSGRIPNWIDK 469
N +EG +FG T LDL NR G +P + +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 470 LSHLSYLILANNNLEGEVP 488
L L L ++ NNL GE+P
Sbjct: 267 LKFLHSLNVSFNNLCGEIP 285
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS 423
N++ G IP + L+ L + + + ++ G IP L ++ L LD N +SG+LP S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 424 SWL-LTQVHLSRNKIEGQLEDVFG---DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILA 479
S L + N+I G + D +G + ++ +S NR +G+IP L +L+++ L+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 480 NNNLEGEVPV 489
N LEG+ V
Sbjct: 206 RNMLEGDASV 215
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 100/281 (35%), Gaps = 57/281 (20%)
Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFP-----------RFLYYQ---------- 204
NR ++ + + T +++ N+ LSG +P FLY
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 205 ------HELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFFQMPVNPLKQLTT 258
+L Y+ ++H N+ G P +LSG ++ L L
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVG 153
Query: 259 IDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSL 318
I N I G IP G+F ISRN L G IP T +L + LS N L
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP----PTFANLNLAFVDLSRNML 209
Query: 319 QGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLS 378
+G + N + L N + GK+ G
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDL---------------------GKV----GLSK 244
Query: 379 NLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP 419
NL + + NN + G +P L +L FL L++ NN+ G +P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 27/194 (13%)
Query: 52 SIAVLTSVKHLSMRNCYLYGT-SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRI 110
+IA LT + +L + + + G DF L ++ L L YN + GTLP + ++ +L
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 111 LDIASNQITGNISSSPLRYLTSLEELRVSNNQF--QIPISFEP----------------- 151
+ N+I+G I S + + +S N+ +IP +F
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213
Query: 152 ---FFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELR 208
F + +K + KN L ++ L+ L + L R T P+ L L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 209 YVDLSHMNLRGEFP 222
+++S NL GE P
Sbjct: 272 SLNVSFNNLCGEIP 285
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 172 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 226
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 227 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 278
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 279 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 311
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SC 421
+N IS P LG L+NL ++ + N L+ L L LT LDL N IS P S
Sbjct: 207 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 262
Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
+ LT++ L N+I + + G L L+L+ N+ P I L +L+YL L
Sbjct: 263 LTK--LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 317
Query: 481 NNLEGEVPV 489
NN+ PV
Sbjct: 318 NNISDISPV 326
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTVLDLEVNNISGSLPSC 421
+N ++ P L NL+ LVDI+M NN + P ANL L LT+ + ++ +I L +
Sbjct: 76 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNL 132
Query: 422 FSSWLLTQVHLSRNKIEG-----------QLEDVFGD------------ILVTLDLSYNR 458
+ L ++ LS N I QL FG+ L LD+S N+
Sbjct: 133 TN---LNRLELSSNTISDISALSGLTSLQQLS--FGNQVTDLKPLANLTTLERLDISSNK 187
Query: 459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPV 489
S + + KL++L LI NN + P+
Sbjct: 188 VSDI--SVLAKLTNLESLIATNNQISDITPL 216
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLS 433
L +L+NL D+ + NN + P L L LT L L N IS P + LT + L+
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA-LTNLELN 294
Query: 434 RNKIEGQLEDV--FGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481
N QLED+ ++ L L L +N S P + L+ L L ANN
Sbjct: 295 EN----QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 340
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 85 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 139
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L NQ+T PL LT+LE L +S+N+
Sbjct: 140 LSSNTISDI--SALSGLTSLQQLSFG-NQVT---DLKPLANLTTLERLDISSNKV 188
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 16 NLETLELRDYHLE----LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYG 71
NL LEL+D + L N T + L L G+ L + + +IA L S+K L + + +
Sbjct: 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI-- 119
Query: 72 TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQIT-----GNISS-- 124
+D L L +LQ L++ N I P L +T+L+ L I + Q++ N+S
Sbjct: 120 -TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176
Query: 125 ------------SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKL 158
SPL L +L E+ + NNQ P N S L
Sbjct: 177 TLKADDNKISDISPLASLPNLIEVHLKNNQIS---DVSPLANTSNL 219
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 173 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 227
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 228 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 279
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 280 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 312
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SC 421
+N IS P LG L+NL ++ + N L+ L L LT LDL N IS P S
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 263
Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
+ LT++ L N+I + + G L L+L+ N+ P I L +L+YL L
Sbjct: 264 LTK--LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318
Query: 481 NNLEGEVPV 489
NN+ PV
Sbjct: 319 NNISDISPV 327
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTVLDLEVNNISGSLPSC 421
+N ++ P L NL+ LVDI+M NN + P ANL L LT+ + ++ +I L +
Sbjct: 77 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNL 133
Query: 422 FSSWLLTQVHLSRNKIEG-----------QLEDVFGD------------ILVTLDLSYNR 458
+ L ++ LS N I QL FG+ L LD+S N+
Sbjct: 134 TN---LNRLELSSNTISDISALSGLTSLQQLS--FGNQVTDLKPLANLTTLERLDISSNK 188
Query: 459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPV 489
S + + KL++L LI NN + P+
Sbjct: 189 VSDI--SVLAKLTNLESLIATNNQISDITPL 217
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 86 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 140
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L NQ+T PL LT+LE L +S+N+
Sbjct: 141 LSSNTISDI--SALSGLTSLQQLSFG-NQVT---DLKPLANLTTLERLDISSNKV 189
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 168 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 222
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 223 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 274
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 275 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 307
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 32 FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGY 91
TNL+ L L+G+ ++ + ++A LT++ L + N + S+ L L L EL +G
Sbjct: 215 LTNLDELSLNGN--QLKDIGTLASLTNLTDLDLANNQI---SNLAPLSGLTKLTELKLGA 269
Query: 92 NNIGGTLPWCLVNMTSLRILDIASNQIT------------------GNISS-SPLRYLTS 132
N I P L +T+L L++ NQ+ NIS SP+ LT
Sbjct: 270 NQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 133 LEELRVSNNQF 143
L+ L SNN+
Sbjct: 328 LQRLFFSNNKV 338
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 81 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 135
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L+ NQ+T PL LT+LE L +S+N+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLNFG-NQVT---DLKPLANLTTLERLDISSNKV 184
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTVLDLEVNNISGSLPSC 421
+N ++ P L NL+ LVDI+M NN + P ANL L LT+ + ++ +I L +
Sbjct: 72 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNL 128
Query: 422 FSSWLLTQVHLSRNKIEG--------QLEDV-FGD------------ILVTLDLSYNRFS 460
+ L ++ LS N I L+ + FG+ L LD+S N+ S
Sbjct: 129 TN---LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVS 185
Query: 461 GRIPNWIDKLSHLSYLILANNNLEGEVPV 489
+ + KL++L LI NN + P+
Sbjct: 186 DI--SVLAKLTNLESLIATNNQISDITPL 212
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 168 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 222
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 223 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 274
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 275 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 307
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SC 421
+N IS P LG L+NL ++ + N L+ L L LT LDL N IS P S
Sbjct: 203 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 258
Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
+ LT++ L N+I + + G L L+L+ N+ P I L +L+YL L
Sbjct: 259 LTK--LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 313
Query: 481 NNLEGEVPV 489
NN+ PV
Sbjct: 314 NNISDISPV 322
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 81 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 135
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L+ NQ+T PL LT+LE L +S+N+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLNFG-NQVT---DLKPLANLTTLERLDISSNKV 184
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTVLDLEVNNISGSLPSC 421
+N ++ P L NL+ LVDI+M NN + P ANL L LT+ + ++ +I L +
Sbjct: 72 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNL 128
Query: 422 FSSWLLTQVHLSRNKIEG--------QLEDV-FGD------------ILVTLDLSYNRFS 460
+ L ++ LS N I L+ + FG+ L LD+S N+ S
Sbjct: 129 TN---LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVS 185
Query: 461 GRIPNWIDKLSHLSYLILANNNLEGEVPV 489
+ + KL++L LI NN + P+
Sbjct: 186 DI--SVLAKLTNLESLIATNNQISDITPL 212
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 169 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 223
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 275
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 276 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 308
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 32 FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGY 91
TNL+ L L+G+ ++ + ++A LT++ L + N + + GL +L EL +G
Sbjct: 216 LTNLDELSLNGN--QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT---ELKLGA 270
Query: 92 NNIGGTLPWCLVNMTSLRILDIASNQIT------------------GNISS-SPLRYLTS 132
N I P L +T+L L++ NQ+ NIS SP+ LT
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 133 LEELRVSNNQF 143
L+ L SNN+
Sbjct: 329 LQRLFFSNNKV 339
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 81 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 135
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L +SNQ+T PL LT+LE L +S+N+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERLDISSNKV 185
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTV--------------- 406
+N ++ P L NL+ LVDI+M NN + P ANL L LT+
Sbjct: 72 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 129
Query: 407 ----LDLEVNNISG-SLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSG 461
L+L N IS S S +S L Q+ S N++ L LD+S N+ S
Sbjct: 130 NLNRLELSSNTISDISALSGLTS--LQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSD 187
Query: 462 RIPNWIDKLSHLSYLILANNNLEGEVPV 489
+ + KL++L LI NN + P+
Sbjct: 188 I--SVLAKLTNLESLIATNNQISDITPL 213
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 169 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 223
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 275
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 276 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 308
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 81 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 135
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L +SNQ+T PL LT+LE L +S+N+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERLDISSNKV 185
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTV--------------- 406
+N ++ P L NL+ LVDI+M NN + P ANL L LT+
Sbjct: 72 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 129
Query: 407 ----LDLEVNNISG-SLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSG 461
L+L N IS S S +S L Q+ S N++ L LD+S N+ S
Sbjct: 130 NLNRLELSSNTISDISALSGLTS--LQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSD 187
Query: 462 RIPNWIDKLSHLSYLILANNNLEGEVPV 489
+ + KL++L LI NN + P+
Sbjct: 188 I--SVLAKLTNLESLIATNNQISDITPL 213
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG 344
N++R L+ + + G SLQ L+ S+N Q NLT L L + +N+ +
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLSFSSN--QVTDLKPLANLTTLERLDISSNKVSD 187
Query: 345 GIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFL 404
+N IS P LG L+NL ++ + N L+ L L L
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL 241
Query: 405 TVLDLEVNNISGSLP-SCFSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGR 462
T LDL N IS P S + LT++ L N+I + + G L L+L+ N+
Sbjct: 242 TDLDLANNQISNLAPLSGLTK--LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDI 298
Query: 463 IPNWIDKLSHLSYLILANNNLEGEVPV 489
P I L +L+YL L NN+ PV
Sbjct: 299 SP--ISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T LE L D S+ + + +A LT+++ L N + SD L L +L EL
Sbjct: 169 LANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELS 223
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
+ N + L ++T+L LD+A+NQI+ + +PL LT L EL++ NQ +
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS---N 275
Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
P + L +N+L ++P L+N++
Sbjct: 276 ISPLAGLTALTNLELNENQL------EDISPISNLKNLT 308
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
L N T L ++++ + I + +A LT++ L++ N + +D L L +L L
Sbjct: 81 LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI---TDIDPLKNLTNLNRLE 135
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
+ N I L +TSL+ L+ +SNQ+T PL LT+LE L +S+N+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLNFSSNQVT---DLKPLANLTTLERLDISSNKV 185
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTV--------------- 406
+N ++ P L NL+ LVDI+M NN + P ANL L LT+
Sbjct: 72 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 129
Query: 407 ----LDLEVNNISG-SLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSG 461
L+L N IS S S +S L Q++ S N++ L LD+S N+ S
Sbjct: 130 NLNRLELSSNTISDISALSGLTS--LQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD 187
Query: 462 RIPNWIDKLSHLSYLILANNNLEGEVPV 489
+ + KL++L LI NN + P+
Sbjct: 188 I--SVLAKLTNLESLIATNNQISDITPL 213
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SC 421
+N IS P LG L+NL ++ + N L+ L L LT LDL N IS P S
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 259
Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
+ LT++ L N+I + + G L L+L+ N+ P I L +L+YL L
Sbjct: 260 LTK--LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 314
Query: 481 NNLEGEVPV 489
NN+ PV
Sbjct: 315 NNISDISPV 323
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663
I LNL+HN L + F+ SQ+ SLD+ +N + P +L L + ++ HN LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 664 GKVPDRVGQFAT 675
++ D+ F T
Sbjct: 92 -QLSDKTFAFCT 102
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
LD+ N ++ P L M++ LNL HN L TF+ + + L L N +Q
Sbjct: 58 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 642 IPTQLVELYALAIFSVAHNNLSG 664
V+ L ++HN LS
Sbjct: 118 KNNPFVKQKNLITLDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663
I LNL+HN L + F+ SQ+ SLD+ +N + P +L L + ++ HN LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 664 GKVPDRVGQFAT 675
++ D+ F T
Sbjct: 87 -QLSDKTFAFCT 97
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
LD+ N ++ P L M++ LNL HN L TF+ + + L L N +Q
Sbjct: 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 642 IPTQLVELYALAIFSVAHNNLSG 664
V+ L ++HN LS
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663
I LNL+HN L + F+ SQ+ SLD+ +N + P +L L + ++ HN LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 664 GKVPDRVGQFAT 675
++ D+ F T
Sbjct: 97 -QLSDKTFAFCT 107
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
LD+ N ++ P L M++ LNL HN L TF+ + + L L N +Q
Sbjct: 63 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 642 IPTQLVELYALAIFSVAHNNLSG 664
V+ L ++HN LS
Sbjct: 123 KNNPFVKQKNLITLDLSHNGLSS 145
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I +I +
Sbjct: 112 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 169
Query: 127 LRYLTSLEELRVSNNQFQIPISF-EP-FFNHSKLKKFYGQKNRL 168
LR L + L +S + P++F +P F +LK+ N+L
Sbjct: 170 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 213
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I +I +
Sbjct: 113 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 170
Query: 127 LRYLTSLEELRVSNNQFQIPISF-EP-FFNHSKLKKFYGQKNRL 168
LR L + L +S + P++F +P F +LK+ N+L
Sbjct: 171 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 214
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I +I +
Sbjct: 112 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 169
Query: 127 LRYLTSLEELRVSNNQFQIPISF-EP-FFNHSKLKKFYGQKNRL 168
LR L + L +S + P++F +P F +LK+ N+L
Sbjct: 170 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 213
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I +I +
Sbjct: 111 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168
Query: 127 LRYLTSLEELRVSNNQFQIPISF-EP-FFNHSKLKKFYGQKNRL 168
LR L + L +S + P++F +P F +LK+ N+L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I +I +
Sbjct: 113 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 170
Query: 127 LRYLTSLEELRVSNNQFQIPISF-EP-FFNHSKLKKFYGQKNRL 168
LR L + L +S + P++F +P F +LK+ N+L
Sbjct: 171 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 214
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 39/157 (24%)
Query: 16 NLETLELRDYHLE----LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYG 71
NL LEL+D + L N T + L L G+ L + + +IA L S+K L + + +
Sbjct: 70 NLIGLELKDNQITDLTPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI-- 125
Query: 72 TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLT 131
+D L L +LQ L++ N QIT NIS PL LT
Sbjct: 126 -TDVTPLAGLSNLQVLYLDLN------------------------QIT-NIS--PLAGLT 157
Query: 132 SLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL 168
+L+ L + NNQ P N SKL N++
Sbjct: 158 NLQYLSIGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I +I +
Sbjct: 111 NLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168
Query: 127 LRYLTSLEELRVSNNQFQIPISF 149
LR L + L +S + P++F
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNF 191
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 601 LNMIRALNLSHNNLMGT-IPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH 659
L+ + L ++ N+ +P F+ L + LDLS L+ PT L +L + ++A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 660 NNLSGKVPDRV 670
N L VPD +
Sbjct: 504 NQLKS-VPDGI 513
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I I +
Sbjct: 135 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTD 192
Query: 127 LRYLTSLEELRVSNNQFQIPISF 149
LR L + L +S + P++F
Sbjct: 193 LRVLHQMPLLNLSLDLSLNPMNF 215
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 33 TNLEVLILDGSALHIRFLQSI-AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGY 91
++LEVL + G++ FL I L ++ L + C L S L LQ L++ +
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSH 527
Query: 92 NNIGG--TLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISF 149
NN T P+ +N SL++LD + N I + + +SL L ++ N F
Sbjct: 528 NNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585
Query: 150 EPFFNHSKLKKFYGQKNRLFVEIE 173
+ F ++ + +L VE+E
Sbjct: 586 QSFL------QWIKDQRQLLVEVE 603
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 618 IPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN 661
+P F+ L + LDLS L+ PT L +L + +++HNN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
LDLS +L P L+ ++ LN+SHNN + L+ ++ LD S N +
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 643 PTQLVEL-YALAIFSVAHNNLS 663
+L +LA ++ N+ +
Sbjct: 559 KQELQHFPSSLAFLNLTQNDFA 580
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652
F IG+L ++ LN++HN + +P FS+L+ +E LDLS N +Q T L L+ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 14 FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
FP L+ L+L ++ + + ++L LIL G+ + L + + L+S++ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 68 YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNISSSP 126
L +F + L L+EL++ +N I LP N+T+L LD++SN+I I +
Sbjct: 111 NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTD 168
Query: 127 LRYLTSLEELRVSNNQFQIPISF 149
LR L + L +S + P++F
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNF 191
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 33 TNLEVLILDGSALHIRFLQSI-AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGY 91
++LEVL + G++ FL I L ++ L + C L S L LQ L++ +
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSH 503
Query: 92 NNIGG--TLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISF 149
NN T P+ +N SL++LD + N I + + +SL L ++ N F
Sbjct: 504 NNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
Query: 150 EPFFNHSKLKKFYGQKNRLFVEIE 173
+ F ++ + +L VE+E
Sbjct: 562 QSFL------QWIKDQRQLLVEVE 579
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 618 IPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN 661
+P F+ L + LDLS L+ PT L +L + +++HNN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663
I LNL+HN L P+ F+ SQ+ LD +N + P L L + ++ HN LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 664 GKVPDRVGQFAT 675
++ D+ F T
Sbjct: 87 -QISDQTFVFCT 97
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 119/312 (38%), Gaps = 49/312 (15%)
Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CFS 423
HI +P SN+ + + +N L P N + + L +LD N+IS P C
Sbjct: 18 HIPDDLP------SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI 71
Query: 424 SWLLTQVHLSRNKIEGQLED---VFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
LL ++L N++ Q+ D VF L LDL N N +L L L
Sbjct: 72 LPLLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDL-- 128
Query: 481 NNLEGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASS 540
SHN LS T LG G
Sbjct: 129 ----------------------SHNGLSST--------KLGTGVQLENLQELLLAKNKIL 158
Query: 541 PAAGEAVSPSGSSTMRKEESVEFRTKNTS---YYYQGRILKIMFGLDLSCNKLTGEIPFQ 597
E + G+S++RK + K S + G++ ++ LT ++ ++
Sbjct: 159 ALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWE 218
Query: 598 IGYLNMIRALNLSHNNLMGTIPSTFSHL--SQIESLDLSYNMLQGKIPTQLVELYALAIF 655
+ + I+ L+L++N L+ T STFS L + + LDLSYN L L +L
Sbjct: 219 LSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYL 277
Query: 656 SVAHNNLSGKVP 667
S+ +NN+ P
Sbjct: 278 SLEYNNIQRLSP 289
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 22 LRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL-YGTSDFQGLCE 80
+ D+ + L + LE L +D + + + L S+K+LS+ + T +
Sbjct: 320 IDDFSFQWLKY--LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVS 377
Query: 81 LVH--LQELHIGYNNIG----GTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLE 134
L H L L++ N+I GT W + LRILD+ N+I +S R L ++
Sbjct: 378 LAHSPLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEIEQKLSGQEWRGLRNIF 433
Query: 135 ELRVSNNQF 143
E+ +S N++
Sbjct: 434 EIYLSYNKY 442
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 568 TSYYYQGRILKIMFG------------LDLSCNKLTGE--IPFQIGYLNMIRALNLSHNN 613
T Y +G + K+ G LDLS N + Q+ L+ ++ LNLSHN
Sbjct: 325 THLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
Query: 614 LMGTIPSTFSHLSQIESLDLSYNMLQGKIP 643
+G F Q+E LDL++ L P
Sbjct: 385 PLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 81 LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
L++L+EL++G N +G ++T L +LD+ +NQ+T + S+ L L+EL +
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCC 121
Query: 141 NQF-QIPISFE 150
N+ ++P E
Sbjct: 122 NKLTELPRGIE 132
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 406 VLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGR 462
+L L N I+ P F S + L +++L N++ VF + L LDL N+ +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 463 IPNWIDKLSHLSYLILANNNLEGEVP 488
D+L HL L + N L E+P
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELP 128
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 607 LNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKV 666
LNL+HN L F L+ + LDLSYN LQ +L L + N L V
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-V 196
Query: 667 PDRVGQFATFTENSY 681
PD G F T Y
Sbjct: 197 PD--GVFDRLTSLQY 209
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVH 431
L L+NL +I+ N L+ KL L L L V N SLP L LT ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-VENQLQSLPDGVFDKLTNLTYLN 139
Query: 432 LSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE 484
L+ N+++ + VF + L LDLSYN+ DKL+ L L L N L+
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 14 FPNLETLELRDYHLE----LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
PN+ L L L L TNL LIL G+ L LT++K L + L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 70 YGTSD--FQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
D F L L +L ++ +N + +T+L LD++ NQ+ ++
Sbjct: 122 QSLPDGVFDKLTNLTYL---NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177
Query: 128 RYLTSLEELRVSNNQFQ 144
LT L++LR+ NQ +
Sbjct: 178 DKLTQLKDLRLYQNQLK 194
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 33 TNLEVLILDGSALHIRFLQSI-AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGY 91
++LEVL + G++ FL I L ++ L + C L S L LQ L++ +
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSH 208
Query: 92 NNIGG--TLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISF 149
NN T P+ +N SL++LD + N I + + +SL L ++ N F
Sbjct: 209 NNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
Query: 150 EPFFNHSKLKKFYGQKNRLFVEIE 173
+ F ++ + +L VE+E
Sbjct: 267 QSFL------QWIKDQRQLLVEVE 284
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 618 IPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN 661
+P F+ L + LDLS L+ PT L +L + +++HNN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 589 KLTGEIPFQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQ 639
KL F IG L ++ LN++HN + +P+ FS+L+ + +DLSYN +Q
Sbjct: 110 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 56 LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
L ++HL ++ L ++F L L L I Y N + +TSL L +A
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 452
Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESH 175
N N S+ T+L L +S Q + IS+ F +L+ N L SH
Sbjct: 453 NSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSH 511
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660
L+ ++ LN+SHNNL+ S ++ L + +LD S+N ++ +LA F++ +N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Query: 661 NLS 663
+++
Sbjct: 551 SVA 553
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 589 KLTGEIPFQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQ 639
KL F IG L ++ LN++HN + +P+ FS+L+ + +DLSYN +Q
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 56 LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
L ++HL ++ L ++F L L L I Y N + +TSL L +A
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESH 175
N N S+ T+L L +S Q + IS+ F +L+ N L SH
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660
L+ ++ LN+SHNNL+ S ++ L + +LD S+N ++ +LA F++ +N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 661 NLS 663
+++
Sbjct: 556 SVA 558
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 28 ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL--YGTSDFQGLCELVHLQ 85
+L NL+ L+L + ++ S + L S++HL + YL +S F+ L L L
Sbjct: 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130
Query: 86 ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQI 145
L Y +G T ++T L+IL + + I LT LEEL + + Q
Sbjct: 131 LLGNPYKTLGETS--LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ- 187
Query: 146 PISFEP 151
S+EP
Sbjct: 188 --SYEP 191
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
LDLS N++T + ++AL L+ N + +FS L +E LDLSYN L
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 642 IPTQLVELYALAIFSVAHN------------NLSGKVPDRVGQFATFTE 678
+ L +L ++ N +L+ RVG TFT+
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 394 IPANLCKLNFLTVLDLEVNNIS----GSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI- 448
IP+ L + + LDL N I+ L C + L + L+ N I ED F +
Sbjct: 46 IPSGLTEA--VKSLDLSNNRITYISNSDLQRCVN---LQALVLTSNGINTIEEDSFSSLG 100
Query: 449 -LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481
L LDLSYN S +W LS L++L L N
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 28 ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL--YGTSDFQGLCELVHLQ 85
+L NL+ L+L + ++ S + L S++HL + YL +S F+ L L L
Sbjct: 45 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 104
Query: 86 ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQI 145
L Y +G T + ++T L+IL + + I LT LEEL + + Q
Sbjct: 105 LLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ- 161
Query: 146 PISFEP 151
S+EP
Sbjct: 162 --SYEP 165
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
LDLS N++T + ++AL L+ N + +FS L +E LDLSYN L
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 642 IPTQLVELYALAIFSVAHN------------NLSGKVPDRVGQFATFTE 678
+ L +L ++ N +L+ RVG TFT+
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 138
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 394 IPANLCKLNFLTVLDLEVNNIS----GSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI- 448
IP+ L + + LDL N I+ L C + L + L+ N I ED F +
Sbjct: 20 IPSGLTEA--VKSLDLSNNRITYISNSDLQRCVN---LQALVLTSNGINTIEEDSFSSLG 74
Query: 449 -LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481
L LDLSYN S +W LS L++L L N
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 56 LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
L ++++L++ C L D L LV L+EL + N + P +TSLR L +
Sbjct: 155 LVNLRYLNLGMCNL---KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQF 143
Q+ I + L SLEEL +S+N
Sbjct: 212 AQV-ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 56 LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
L ++++L++ C L D L LV L+EL + N + P +TSLR L +
Sbjct: 155 LVNLRYLNLGMCNL---KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQF 143
Q+ I + L SLEEL +S+N
Sbjct: 212 AQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
L + LNLSHNNLM F+ L ++E + L++N
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 80 ELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
+LV+L EL + N + P ++T L L + N++ ++ LTSL+ELR+
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 140 NNQFQ 144
NNQ +
Sbjct: 166 NNQLK 170
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
LDL NKL+ L +R L L+ N L F L +E+L ++ N LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY 681
+L LA + N L +P RV F + T+ +Y
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRV--FDSLTKLTY 137
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 34/171 (19%)
Query: 601 LNMIRALNLSHNNLMGTIPSTFSHL----------------------SQIESLDLSYNML 638
L+ ++ L L+HN L P FSHL + +E LD+S N L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 639 QGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESC-Y 697
P V +L++ + HN + + +TF N + G P C Y
Sbjct: 539 LAPNPDVFV---SLSVLDITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADIYCVY 590
Query: 698 PNGSPNV---SVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPY 745
P+ V S+S E D+ + + FI+ V + L + +L V +
Sbjct: 591 PDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKF 641
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 75 FQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLE 134
F+GL HLQ L++ +N + P ++T+LR L + SN++T +S + L +LE
Sbjct: 476 FEGLS---HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--ANLE 529
Query: 135 ELRVSNNQFQIP 146
L +S NQ P
Sbjct: 530 ILDISRNQLLAP 541
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 83 HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
HL+EL + N + P N+ +LR L + SN++ I L++L +L +S N+
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENK 115
Query: 143 FQIPIS--FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
I + F+ +N LK N L V I + + L+ ++L C
Sbjct: 116 IVILLDYMFQDLYN---LKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 201 LYYQHELRYVDLSHMNL 217
L + H L + L H+N+
Sbjct: 172 LSHLHGLIVLRLRHLNI 188
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 56 LTSVKHLSMRN-CYLY---------GTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNM 105
LT+V +L++R+ YL T + L EL+ LQE+ + + P+ +
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
LR+L+++ NQ+T + S + +LE L + +N
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
LD+S NK+ + + L +++L + N+L+ FS L+ +E L L L I
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-I 167
Query: 643 PTQ-LVELYALAIFSVAHNNLSG 664
PT+ L L+ L + + H N++
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINA 190
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%)
Query: 594 IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALA 653
+P ++ + ++LS+N + +FS+++Q+ +L LSYN L+ P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 654 IFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
+ S+ N++S + + + N L C
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 427 LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
LT + LS N+I F ++ L+TL LSYNR P D L L L L N++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 571 YYQGRILKIMFG------------LDLSCNKLTGE--IPFQIGYLNMIRALNLSHNNLMG 616
Y +G + K+ G LDLS + + Q+ L ++ LNLS+N +G
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
Query: 617 TIPSTFSHLSQIESLDLSYNMLQGKIP-TQLVELYALAIFSVAH 659
F Q+E LD+++ L K P + L+ L + +++H
Sbjct: 390 LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 583 LDLSCNKLTGEI----PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML 638
L+LS N LTG + P ++ L++ HNN + +IP +HL ++ L+++ N L
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDL-------HNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 639 QG 640
+
Sbjct: 486 KS 487
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG 640
L LS N ++ I +L+ +R L LSHN + F +E LD+S+N LQ
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 26 HLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSD--FQGLCELVH 83
H +L NL+VLIL S ++ + L S++HL + + +L S F L L +
Sbjct: 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102
Query: 84 LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138
L + Y +G T N+T+L+ L I + + I LTSL EL +
Sbjct: 103 LNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 48/239 (20%)
Query: 258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS 317
T++ SK F+ +P L LE ++S N++ + SLQ L LS N
Sbjct: 316 TVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 318 LQ-----GHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPK 372
L+ G I L NL +L + N F H +
Sbjct: 373 LRSMQKTGEIL---LTLKNLTSLDISRNTF----------------------HPMPDSCQ 407
Query: 373 WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQV 430
W + L N G C L VLD+ NN+ FS +L L ++
Sbjct: 408 WPEKMRFL------NLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQEL 456
Query: 431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVP 488
++SRNK++ + +L+ + +S N+ +P+ I D+L+ L + L N + P
Sbjct: 457 YISRNKLKTLPDASLFPVLLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 394 IPANLCKLNFLTVLDLEVNNIS----GSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI- 448
IP+ L + LDL N I+ G L +C + +L N IEG D F +
Sbjct: 20 IPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLG 74
Query: 449 -LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481
L LDLS N S +W LS L YL L N
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 148/393 (37%), Gaps = 90/393 (22%)
Query: 270 IPTGIGAFLPRLE-HFNISRNVLNGSIPCSLHMTMGCFSLQILALSN---NSLQGHIFSR 325
IP+G+ A + L+ FN + +G + C +LQ+L L + N+++G F
Sbjct: 20 IPSGLTAAMKSLDLSFNKITYIGHGDL-------RACANLQVLILKSSRINTIEGDAF-- 70
Query: 326 SFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLVDIIM 385
++L +L L L DNH+S W G LS+L + +
Sbjct: 71 -YSLGSLEHLDLS------------------------DNHLSSLSSSWFGPLSSLKYLNL 105
Query: 386 PNNHLE----GPIPANLCKLNFLTVLDL----EVNNISGSLPSCFSSWLLTQVHLSRNKI 437
N + + NL L L + ++ E+ I + + + + + L RN
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQ 164
Query: 438 EGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL-----------EGE 486
L+ + +TL LS + F I + D LS + YL L + NL E
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVS 222
Query: 487 VPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA 546
P+ S N L + Y L E +D G++ P+ +
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLR---YILELSEVEFDDCTLNGLGDFN---PSESDV 276
Query: 547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRA 606
VS G K E+V R + +Y L ++ L ++T E
Sbjct: 277 VSELG-----KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE------------- 318
Query: 607 LNLSHNNLMGTIPSTFS-HLSQIESLDLSYNML 638
N+ + +P +FS HL +E LDLS N++
Sbjct: 319 -----NSKVFLVPCSFSQHLKSLEFLDLSENLM 346
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 32 FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGT---SDFQGLCELVHLQELH 88
TNLE L L+G+ + I+ L+++ L+ N Y+ GT +D L L +L+EL+
Sbjct: 65 LTNLEYLNLNGNQI-----TDISPLSNLVKLT--NLYI-GTNKITDISALQNLTNLRELY 116
Query: 89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQ 144
+ +NI P L N+T L++ +N N+S SPL T L L V+ ++ +
Sbjct: 117 LNEDNISDISP--LANLTKXYSLNLGANH---NLSDLSPLSNXTGLNYLTVTESKVK 168
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 601 LNMIRALNLSHNNLMGTIPST-FSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH 659
L + LNLS N +G+I S F +L ++E LDLSYN ++ + L L ++
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 660 NNLSGKVPDRV 670
N L VPD +
Sbjct: 381 NQLKS-VPDGI 390
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 26 HLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSD--FQGLCELVH 83
H +L NL+VLIL S ++ + L S++HL + + +L S F L L +
Sbjct: 69 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 128
Query: 84 LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138
L + Y +G T N+T+L+ L I + + I LTSL EL +
Sbjct: 129 LNLMGNPYQTLGVTS--LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 181
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 148/393 (37%), Gaps = 90/393 (22%)
Query: 270 IPTGIGAFLPRLE-HFNISRNVLNGSIPCSLHMTMGCFSLQILALSN---NSLQGHIFSR 325
IP+G+ A + L+ FN + +G + C +LQ+L L + N+++G F
Sbjct: 46 IPSGLTAAMKSLDLSFNKITYIGHGDL-------RACANLQVLILKSSRINTIEGDAF-- 96
Query: 326 SFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLVDIIM 385
++L +L L L DNH+S W G LS+L + +
Sbjct: 97 -YSLGSLEHLDLS------------------------DNHLSSLSSSWFGPLSSLKYLNL 131
Query: 386 PNNHLE----GPIPANLCKLNFLTVLDL----EVNNISGSLPSCFSSWLLTQVHLSRNKI 437
N + + NL L L + ++ E+ I + + + + + L RN
Sbjct: 132 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQ 190
Query: 438 EGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL-----------EGE 486
L+ + +TL LS + F I + D LS + YL L + NL E
Sbjct: 191 SQSLKSIRDIHHLTLHLSESAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVS 248
Query: 487 VPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA 546
P+ S N L + Y L E +D G++ P+ +
Sbjct: 249 SPMKKLAFRGSVLTDESFNELLKLLR---YILELSEVEFDDCTLNGLGDFN---PSESDV 302
Query: 547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRA 606
VS G K E+V R + +Y L ++ L ++T E
Sbjct: 303 VSELG-----KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE------------- 344
Query: 607 LNLSHNNLMGTIPSTFS-HLSQIESLDLSYNML 638
N+ + +P +FS HL +E LDLS N++
Sbjct: 345 -----NSKVFLVPCSFSQHLKSLEFLDLSENLM 372
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 80 ELVHLQELHIGYNNIGGTLPWCLVN-MTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138
EL L +L++G N + +LP + N +TSL L++++NQ+ ++ + LT L+EL +
Sbjct: 50 ELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107
Query: 139 SNNQFQ 144
+ NQ Q
Sbjct: 108 NTNQLQ 113
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 83 HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
H+QEL +G N I + + L+ L++ NQI+ + S +L SL L +++N
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNP 137
Query: 143 FQIPISFEPFFNHSKLKKFYGQKNR 167
F F + K G R
Sbjct: 138 FNCNCHLAWFAEWLRKKSLNGGAAR 162
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
L+ ++ LNL N + +P +F HL+ + SL+L+ N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVH 431
L L+NL +I+ N L+ KL L L L V N SLP L LT ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-VENQLQSLPDGVFDKLTNLTYLY 139
Query: 432 LSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE 484
L N+++ + VF + L LDL N+ DKL+ L L L +N L+
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK-IPTQLVELYALAI 654
Q+ L+ +++LNLS+N + F Q+E LDL++ L+ K + L+ L +
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 655 FSVAH 659
+++H
Sbjct: 430 LNLSH 434
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
LK+M +DLS N+LT + +L I LNL+ N++ +PS LSQ +++L N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 637 ML 638
L
Sbjct: 558 PL 559
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 76 QGLCELVHLQELHIGYNNIGGTLP--WCLVNM---TSLRILDIASNQITGNISSSPLRYL 130
Q + +LV +EL G N G L M T+L+ L ++ NQI+ SPL+ L
Sbjct: 29 QSVTDLVSQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS---DLSPLKDL 84
Query: 131 TSLEELRVSNNQFQ 144
T LEEL V+ N+ +
Sbjct: 85 TKLEELSVNRNRLK 98
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
L ++ LDLS N+L +P L + L++S N L L +++ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 637 MLQGKIPTQLVELYALAIFSVAHNNLS 663
L+ P L L S+A+NNL+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
L ++ LDLS N+L +P L + L++S N L L +++ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 637 MLQGKIPTQLVELYALAIFSVAHNNLS 663
L+ P L L S+A+NNL+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 564 RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFS 623
R + T G L ++ LDLS N+L +P L + L++S N L
Sbjct: 64 RAELTKLQVDG-TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 624 HLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663
L +++ L L N L+ P L L S+A+NNL+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 84 LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
L ELH+ +N I L+ + L L + NQI I + L +L +L EL + NN+
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL 253
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
L ++ LDLS N+L +P L + L++S N L L +++ L L N
Sbjct: 77 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 637 MLQGKIPTQLVELYALAIFSVAHNNLS 663
L+ P L L S+A+NNL+
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYN 636
L ++ LDLS N+L +P L + L++S N L L +++ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 637 MLQGKIPTQLVELYALAIFSVAHNNLS 663
L+ P L L S+A+NNL+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 400 KLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYN 457
KL+++ + D + I LP LT++HL NKI + L L LS+N
Sbjct: 172 KLSYIRIADTNITTIPQGLPPS-----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 458 RFSGRIPNWIDKLSHLSYLILANNNL 483
S + HL L L NN L
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 400 KLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYN 457
KL+++ + D + I LP LT++HL NKI + L L LS+N
Sbjct: 172 KLSYIRIADTNITTIPQGLPPS-----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 458 RFSGRIPNWIDKLSHLSYLILANNNL 483
S + HL L L NN L
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,991,750
Number of Sequences: 62578
Number of extensions: 887647
Number of successful extensions: 2330
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 438
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)