Query 046050
Match_columns 779
No_of_seqs 612 out of 5025
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-76 7.8E-81 694.4 47.5 668 15-700 50-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.6E-70 2.6E-74 639.0 45.4 637 32-687 49-717 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-59 1.1E-63 544.3 50.8 594 17-668 6-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5E-59 1.7E-63 542.8 46.5 586 36-692 7-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-56 3.9E-61 532.6 40.9 546 33-700 24-592 (844)
6 3t6q_A CD180 antigen; protein- 100.0 9.3E-55 3.2E-59 500.0 50.2 534 37-668 16-565 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-56 3.3E-60 524.7 38.6 531 61-693 8-566 (844)
8 3t6q_A CD180 antigen; protein- 100.0 6.1E-54 2.1E-58 493.2 39.4 534 59-692 14-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-53 8E-58 488.3 40.6 530 36-668 14-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 6.9E-53 2.3E-57 484.5 36.7 530 58-692 12-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 2.4E-48 8.2E-53 443.6 39.0 515 36-669 10-537 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-48 1.9E-52 438.3 37.8 485 37-668 9-515 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 3E-47 1E-51 434.5 33.7 511 59-692 9-536 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-46 1.9E-50 421.8 35.3 489 14-643 4-514 (549)
15 4eco_A Uncharacterized protein 100.0 2E-47 6.7E-52 438.2 17.5 374 190-667 192-604 (636)
16 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-44 1.1E-48 415.3 39.7 514 58-667 53-584 (635)
17 4g8a_A TOLL-like receptor 4; l 100.0 8.2E-44 2.8E-48 412.0 36.8 529 19-642 35-583 (635)
18 4ecn_A Leucine-rich repeat pro 100.0 1.8E-44 6.2E-49 419.4 29.1 401 191-691 435-870 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-44 5.5E-49 406.7 26.5 459 18-516 3-489 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-44 9.5E-49 404.7 28.4 445 82-668 21-486 (520)
21 4eco_A Uncharacterized protein 100.0 1.7E-45 5.7E-50 422.2 16.1 441 182-690 82-603 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 3.7E-44 1.3E-48 416.8 23.9 361 264-689 435-842 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-41 5E-46 385.7 27.8 462 58-668 32-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-41 6.4E-46 384.7 24.0 463 34-516 32-518 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.5E-39 5.2E-44 359.8 29.8 381 209-668 14-413 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 2.7E-40 9.2E-45 362.2 22.6 200 206-439 92-291 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.4E-38 4.6E-43 352.2 29.5 350 280-691 31-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.1E-38 7.1E-43 347.2 26.7 412 56-672 10-438 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.5E-36 1.2E-40 334.7 26.9 325 308-692 34-361 (477)
30 1o6v_A Internalin A; bacterial 100.0 8.9E-35 3E-39 321.7 33.7 346 204-665 45-390 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7.9E-35 2.7E-39 319.1 29.4 352 182-670 43-394 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 1.4E-35 4.9E-40 329.7 23.7 322 309-692 14-338 (477)
33 1o6v_A Internalin A; bacterial 100.0 3.9E-34 1.3E-38 316.6 32.0 349 180-645 45-393 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-34 5.5E-39 316.7 28.7 315 29-438 38-352 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 1.8E-34 6.3E-39 311.8 27.1 335 253-691 44-378 (390)
36 3oja_B Anopheles plasmodium-re 100.0 1E-33 3.4E-38 322.8 27.3 335 253-691 50-384 (597)
37 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-33 8.1E-38 292.5 19.1 258 354-696 50-312 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 1E-32 3.6E-37 298.0 24.6 310 307-691 46-356 (390)
39 4fmz_A Internalin; leucine ric 100.0 3.3E-31 1.1E-35 281.7 31.2 306 251-663 41-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 3E-32 1E-36 310.6 24.6 310 307-691 52-362 (597)
41 4fmz_A Internalin; leucine ric 100.0 4.5E-31 1.5E-35 280.6 31.6 306 54-415 41-346 (347)
42 2ft3_A Biglycan; proteoglycan, 100.0 9E-31 3.1E-35 276.1 25.2 267 307-661 55-331 (332)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-31 6.5E-36 278.1 15.9 254 330-667 50-308 (313)
44 1xku_A Decorin; proteoglycan, 100.0 7.5E-30 2.5E-34 268.9 28.1 83 578-661 240-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-33 1.2E-37 309.3 1.5 62 182-244 4-70 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 6.3E-33 2.2E-37 307.3 3.0 357 255-665 4-413 (461)
47 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.8E-34 266.9 27.0 265 331-663 32-306 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 7.1E-30 2.4E-34 269.2 22.8 285 331-684 34-330 (332)
49 2z80_A TOLL-like receptor 2, v 100.0 1.9E-28 6.6E-33 260.6 18.3 275 309-668 34-319 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 2.5E-27 8.6E-32 252.0 21.4 256 58-368 53-315 (353)
51 2z66_A Variable lymphocyte rec 100.0 1.4E-27 4.7E-32 248.8 18.9 234 354-667 28-265 (306)
52 3ogk_B Coronatine-insensitive 100.0 3.4E-29 1.2E-33 286.6 7.2 300 202-504 109-445 (592)
53 2z66_A Variable lymphocyte rec 100.0 3.7E-28 1.3E-32 253.1 14.2 251 357-692 10-266 (306)
54 3zyj_A Leucine-rich repeat-con 99.9 4.3E-27 1.5E-31 258.0 22.7 250 355-668 44-297 (440)
55 3ogk_B Coronatine-insensitive 99.9 1.6E-29 5.4E-34 289.4 3.4 403 6-415 64-526 (592)
56 3zyi_A Leucine-rich repeat-con 99.9 6E-27 2.1E-31 257.8 22.2 250 355-668 55-308 (452)
57 3o53_A Protein LRIM1, AGAP0063 99.9 7.8E-29 2.7E-33 259.1 5.6 247 352-668 32-281 (317)
58 3zyi_A Leucine-rich repeat-con 99.9 1E-26 3.4E-31 256.0 22.0 248 331-642 55-306 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.8E-26 6.3E-31 253.0 24.0 249 308-641 45-294 (440)
60 4fcg_A Uncharacterized protein 99.9 2.2E-26 7.6E-31 241.1 20.5 235 329-663 80-314 (328)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-26 1.5E-30 234.6 20.6 233 355-669 33-267 (285)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-26 5.1E-31 238.2 16.7 250 357-691 14-265 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-25 9.5E-30 250.3 27.6 263 280-669 41-303 (622)
64 4fcg_A Uncharacterized protein 99.9 7.4E-26 2.5E-30 237.1 20.2 233 307-640 82-315 (328)
65 3oja_A Leucine-rich immune mol 99.9 3.8E-27 1.3E-31 260.6 9.7 235 354-658 34-270 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.9 8.9E-28 3E-32 251.1 3.7 264 356-688 12-276 (317)
67 3oja_A Leucine-rich immune mol 99.9 9.9E-27 3.4E-31 257.2 11.2 253 370-691 22-286 (487)
68 1wwl_A Monocyte differentiatio 99.9 2.8E-27 9.7E-32 246.6 5.9 252 328-664 41-310 (312)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1E-24 3.5E-29 245.6 27.0 270 254-651 40-309 (622)
70 2p1m_B Transport inhibitor res 99.9 2E-27 6.8E-32 272.1 -0.1 378 227-663 102-519 (594)
71 1wwl_A Monocyte differentiatio 99.9 5E-26 1.7E-30 237.2 8.0 130 278-415 42-186 (312)
72 2p1m_B Transport inhibitor res 99.9 2E-27 6.8E-32 272.1 -3.3 409 8-445 59-526 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 7.3E-24 2.5E-28 216.9 18.2 226 358-668 11-242 (276)
74 2o6q_A Variable lymphocyte rec 99.9 2E-23 7E-28 212.6 19.8 204 403-667 17-222 (270)
75 1p9a_G Platelet glycoprotein I 99.9 2.1E-23 7.2E-28 214.3 18.2 106 398-508 6-113 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.2E-28 214.0 17.6 205 427-691 30-241 (276)
77 2o6q_A Variable lymphocyte rec 99.9 7.8E-23 2.7E-27 208.3 21.0 206 426-691 17-222 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.7E-27 207.0 19.8 130 375-508 7-137 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.5E-27 207.6 15.9 225 356-673 21-245 (272)
80 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.4E-28 221.3 7.7 265 311-647 3-305 (362)
81 3goz_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 220.7 8.0 255 335-667 3-301 (362)
82 3m19_A Variable lymphocyte rec 99.9 6.3E-22 2.1E-26 199.2 15.6 211 427-699 16-232 (251)
83 2ca6_A RAN GTPase-activating p 99.9 7.3E-23 2.5E-27 220.4 6.7 94 322-415 24-135 (386)
84 3rfs_A Internalin B, repeat mo 99.9 2.2E-21 7.5E-26 197.7 16.6 201 278-515 40-242 (272)
85 4glp_A Monocyte differentiatio 99.9 1.2E-21 4.2E-26 203.8 13.5 87 329-415 90-182 (310)
86 3m19_A Variable lymphocyte rec 99.9 5.4E-21 1.8E-25 192.4 17.7 179 449-689 16-194 (251)
87 2ca6_A RAN GTPase-activating p 99.9 1.4E-22 4.8E-27 218.2 5.3 161 348-508 26-229 (386)
88 2ast_B S-phase kinase-associat 99.9 7.6E-22 2.6E-26 208.4 9.5 253 331-671 48-314 (336)
89 2ast_B S-phase kinase-associat 99.8 1.4E-21 4.8E-26 206.3 9.7 255 33-327 47-314 (336)
90 4glp_A Monocyte differentiatio 99.8 2.5E-21 8.5E-26 201.5 10.3 227 34-292 65-307 (310)
91 1h6u_A Internalin H; cell adhe 99.8 3.4E-20 1.1E-24 192.4 17.5 81 578-664 151-231 (308)
92 2xwt_C Thyrotropin receptor; s 99.8 2.9E-20 1E-24 185.6 16.2 196 58-264 32-236 (239)
93 2xwt_C Thyrotropin receptor; s 99.8 2.2E-20 7.5E-25 186.5 14.6 196 279-505 31-236 (239)
94 1h6u_A Internalin H; cell adhe 99.8 2.6E-19 8.8E-24 185.7 18.7 192 203-415 39-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.8E-24 190.9 16.3 196 309-508 12-215 (350)
96 2o6s_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 174.6 15.1 178 429-673 11-188 (208)
97 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5.1E-24 201.0 15.0 189 355-651 60-255 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5E-24 201.1 14.3 187 403-673 60-253 (571)
99 4ay9_X Follicle-stimulating ho 99.8 9.3E-19 3.2E-23 185.2 17.4 81 60-144 12-93 (350)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-19 1.7E-23 173.7 14.2 157 450-668 14-171 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 5.9E-19 2E-23 173.1 14.6 156 450-667 14-169 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-19 1.5E-23 174.1 13.3 159 473-692 13-171 (220)
103 2xot_A Amphoterin-induced prot 99.8 5E-19 1.7E-23 188.1 13.3 180 428-667 21-206 (361)
104 2v9t_B SLIT homolog 2 protein 99.8 8.1E-19 2.8E-23 172.1 12.9 157 474-692 14-170 (220)
105 2xot_A Amphoterin-induced prot 99.8 2.9E-19 1E-23 189.9 10.4 182 449-692 20-207 (361)
106 3e6j_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 169.0 15.4 186 449-700 21-212 (229)
107 2o6s_A Variable lymphocyte rec 99.8 5.3E-18 1.8E-22 165.2 16.6 160 308-472 30-190 (208)
108 3e6j_A Variable lymphocyte rec 99.8 8.6E-18 3E-22 166.0 15.7 157 472-691 20-176 (229)
109 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 8.9E-22 168.9 15.8 186 383-664 29-214 (291)
110 1dce_A Protein (RAB geranylger 99.7 5.7E-20 1.9E-24 205.7 -5.5 122 472-657 442-567 (567)
111 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.4E-22 157.9 12.7 90 578-667 54-143 (192)
112 1w8a_A SLIT protein; signaling 99.7 9.9E-18 3.4E-22 160.6 8.5 182 449-696 10-192 (192)
113 1m9s_A Internalin B; cell inva 99.7 4.8E-17 1.7E-21 183.0 14.5 191 379-665 22-212 (605)
114 1h6t_A Internalin B; cell adhe 99.7 2.2E-16 7.5E-21 162.0 17.7 170 229-416 45-214 (291)
115 1xeu_A Internalin C; cellular 99.7 6.1E-17 2.1E-21 163.4 12.7 171 424-666 18-188 (263)
116 2wfh_A SLIT homolog 2 protein 99.7 5.2E-17 1.8E-21 155.5 11.3 114 578-692 31-144 (193)
117 1m9s_A Internalin B; cell inva 99.7 3.6E-17 1.2E-21 184.1 11.7 82 55-144 41-122 (605)
118 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.4E-21 153.7 12.6 149 449-664 46-195 (197)
119 1dce_A Protein (RAB geranylger 99.7 3.7E-19 1.2E-23 199.2 -8.6 89 577-668 462-551 (567)
120 3sb4_A Hypothetical leucine ri 99.7 2.4E-16 8.4E-21 165.1 12.0 283 14-337 24-328 (329)
121 3sb4_A Hypothetical leucine ri 99.7 2.8E-16 9.6E-21 164.7 12.1 287 32-361 24-328 (329)
122 4ezg_A Putative uncharacterize 99.6 7.9E-16 2.7E-20 148.2 12.7 104 307-414 89-193 (197)
123 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.1E-20 145.3 13.6 92 577-668 53-144 (193)
124 1xeu_A Internalin C; cellular 99.6 6.2E-16 2.1E-20 156.0 11.0 168 307-510 20-187 (263)
125 4b8c_D Glucose-repressible alc 99.6 1.6E-16 5.3E-21 183.7 6.9 188 402-670 173-361 (727)
126 4b8c_D Glucose-repressible alc 99.6 3.2E-16 1.1E-20 181.1 8.5 220 254-508 173-404 (727)
127 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.3E-20 142.1 10.3 137 470-668 23-164 (168)
128 2o6r_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 141.5 12.0 115 577-691 27-141 (177)
129 4fdw_A Leucine rich hypothetic 99.6 6.5E-14 2.2E-18 149.6 23.0 270 81-414 112-382 (401)
130 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.2E-20 137.3 9.4 128 471-659 17-149 (149)
131 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.5E-20 141.0 8.8 109 32-144 23-133 (168)
132 2o6r_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 138.5 12.8 91 578-668 52-142 (177)
133 4fdw_A Leucine rich hypothetic 99.6 8.4E-14 2.9E-18 148.8 20.7 264 11-292 109-383 (401)
134 4fs7_A Uncharacterized protein 99.5 2E-13 6.7E-18 146.8 21.0 238 174-430 155-393 (394)
135 4fs7_A Uncharacterized protein 99.5 2.3E-13 7.8E-18 146.3 21.1 221 198-435 155-376 (394)
136 3g39_A Variable lymphocyte rec 99.5 1.8E-14 6.1E-19 134.7 10.8 91 578-668 30-120 (170)
137 3g39_A Variable lymphocyte rec 99.5 2.8E-14 9.7E-19 133.3 10.6 109 580-691 11-119 (170)
138 2r9u_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 131.5 10.9 91 578-668 33-123 (174)
139 2je0_A Acidic leucine-rich nuc 99.5 5.4E-14 1.8E-18 128.5 10.2 125 307-433 18-148 (149)
140 1ds9_A Outer arm dynein; leuci 99.5 8.8E-16 3E-20 148.0 -2.2 149 449-663 20-185 (198)
141 2r9u_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 130.9 10.7 108 581-691 15-122 (174)
142 1a9n_A U2A', U2A'; complex (nu 99.5 7.3E-14 2.5E-18 131.6 9.0 134 467-664 15-154 (176)
143 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.3E-18 130.0 8.3 134 29-169 15-153 (176)
144 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.1E-20 145.8 -4.7 138 467-668 14-158 (198)
145 4gt6_A Cell surface protein; l 99.3 9.4E-11 3.2E-15 125.8 23.8 132 347-507 258-390 (394)
146 2ifg_A High affinity nerve gro 99.3 2E-12 6.8E-17 136.5 9.8 107 582-691 12-120 (347)
147 4gt6_A Cell surface protein; l 99.3 1.1E-10 3.7E-15 125.3 23.1 158 48-215 54-215 (394)
148 2ifg_A High affinity nerve gro 99.3 4E-12 1.4E-16 134.2 7.3 112 577-691 30-145 (347)
149 3un9_A NLR family member X1; l 99.2 1.6E-12 5.5E-17 137.5 2.4 53 597-649 206-262 (372)
150 3un9_A NLR family member X1; l 99.2 7.9E-13 2.7E-17 139.9 -3.1 138 254-391 101-252 (372)
151 4h09_A Hypothetical leucine ri 99.0 2.7E-08 9.1E-13 106.1 24.6 148 230-386 194-341 (379)
152 4h09_A Hypothetical leucine ri 99.0 3.9E-08 1.3E-12 104.8 22.3 140 350-494 213-355 (379)
153 2ra8_A Uncharacterized protein 98.7 3.6E-08 1.2E-12 103.1 8.5 84 201-288 135-228 (362)
154 2ra8_A Uncharacterized protein 98.6 2.7E-08 9.4E-13 104.0 7.2 81 424-506 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 4E-08 1.4E-12 92.6 5.3 91 53-144 61-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.3E-07 4.4E-12 89.1 3.8 44 465-508 30-78 (185)
157 3rw6_A Nuclear RNA export fact 98.3 4.3E-07 1.5E-11 89.8 5.8 66 600-667 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2.4E-07 8.3E-12 91.6 3.1 78 577-656 169-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.7E-06 9.1E-11 77.8 2.6 83 58-142 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 4.6E-06 1.6E-10 76.2 2.5 84 578-661 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.4 0.00026 8.9E-09 61.6 6.4 40 627-666 32-71 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00028 9.7E-09 65.6 5.3 113 31-144 39-170 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00084 2.9E-08 58.3 6.8 58 581-640 11-69 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00084 2.9E-08 62.5 4.5 38 470-507 125-169 (197)
165 2lz0_A Uncharacterized protein 42.7 28 0.00097 27.7 4.4 40 371-411 13-52 (100)
166 2lz0_A Uncharacterized protein 42.2 32 0.0011 27.4 4.7 45 342-387 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-76 Score=694.37 Aligned_cols=668 Identities=29% Similarity=0.417 Sum_probs=551.6
Q ss_pred CCCcEEeCCCCcc---------ccCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCc-ccccCCCCC
Q 046050 15 PNLETLELRDYHL---------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDF-QGLCELVHL 84 (779)
Q Consensus 15 ~~L~~L~Ls~~~~---------~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L 84 (779)
.+++.|||+++.+ ++.++++|+.++++.+.+. ..+..++.+++|++|+|++|.+.|..|. ..++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 4688899988765 3567888888888888764 3457788999999999999998776652 268889999
Q ss_pred cEEEccCcccccccChhc-cCCCCCCEEeCCCCcCcccCCchh---hcCCCCCCEEEcccccccccCCcccccCCCCCcE
Q 046050 85 QELHIGYNNIGGTLPWCL-VNMTSLRILDIASNQITGNISSSP---LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK 160 (779)
Q Consensus 85 ~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~i~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 160 (779)
++|++++|.+++..|..+ .++++|++|++++|++++..+. . +.++++|++|++++|.+++.++ +..+++|++
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~ 204 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF 204 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCE
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---cccCCcCCE
Confidence 999999999988777765 7899999999999999865554 4 7888999999999999886554 378899999
Q ss_pred EECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050 161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240 (779)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 240 (779)
|++++|.+.+.++. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|
T Consensus 205 L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n 279 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAEN 279 (768)
T ss_dssp EECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCC
Confidence 99999988765554 778889999999999999999999999999999999999999877763 7899999999999
Q ss_pred cccccCCCCCCCC-CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCC
Q 046050 241 SLSGFFQMPVNPL-KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ 319 (779)
Q Consensus 241 ~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 319 (779)
++++..|..+... ++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|... ..++++|++|++++|.++
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~--l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHH--HTTCTTCCEEECCSSEEE
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHH--HhcCCCCCEEeCcCCccC
Confidence 9998888888765 99999999999999888888776 8999999999999988777651 123458999999999999
Q ss_pred ccccccccCCC-CCCEEEccCCcCccccCccccC--CCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcch
Q 046050 320 GHIFSRSFNLT-NLVTLQLDANQFTGGIPENLLN--CSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPA 396 (779)
Q Consensus 320 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (779)
+.+|..+..++ +|++|++++|++++.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++..|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 88999888887 9999999999999888888776 88999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCC
Q 046050 397 NLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHL 473 (779)
Q Consensus 397 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L 473 (779)
.+..+++|+.|++++|.+++.+|..+. +++|++|++++|++++..+..+..+ |++|++++|++++.+|.+++.+++|
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 999999999999999999998888776 8899999999999999888888766 9999999999999999999999999
Q ss_pred cEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCC-CCCCCCCC-C--CCCCCCCCcccc---cc
Q 046050 474 SYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEG-NYDSAAPT-S--EGNYGASSPAAG---EA 546 (779)
Q Consensus 474 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~-~~~~~~~~-~--~~~~~~~~~~~~---~~ 546 (779)
++|++++|++++.+|..+..+++|++|++++|+++|.+|..++....... .+...... . ............ ..
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999998854321000 00000000 0 000000000000 00
Q ss_pred cCC--CCCC-----CCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCc
Q 046050 547 VSP--SGSS-----TMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP 619 (779)
Q Consensus 547 ~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 619 (779)
... .... .........+... .......++.|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~---~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGH---TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEE---CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccchhhhccccccccccccceeccc---CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 000 0000 0000000000000 00111236789999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 046050 620 STFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPN 699 (779)
Q Consensus 620 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l~~~c~~~ 699 (779)
+.|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||+. ++|.+|...+|.|||++||.|+. .|...
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999999999999999999999999999999999999995 89999999999999999999987 89654
Q ss_pred C
Q 046050 700 G 700 (779)
Q Consensus 700 ~ 700 (779)
.
T Consensus 752 ~ 752 (768)
T 3rgz_A 752 N 752 (768)
T ss_dssp C
T ss_pred c
Confidence 3
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.6e-70 Score=639.00 Aligned_cols=637 Identities=26% Similarity=0.342 Sum_probs=540.5
Q ss_pred CCCccEEEccccccccc---cchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccCh--hccCCC
Q 046050 32 FTNLEVLILDGSALHIR---FLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPW--CLVNMT 106 (779)
Q Consensus 32 l~~L~~L~L~~~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~ 106 (779)
-.+++.|+|+++.+.+. +++++..+++|+.++++.+.+.. .+ ..++.+++|++|+|++|.+++.+|. .+++++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-Cc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 36899999999999987 88899999999999999997743 33 3799999999999999999998888 899999
Q ss_pred CCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCccc--ccCCCCCcEEECcCCceeeecccCCCCCCcccc
Q 046050 107 SLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEP--FFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184 (779)
Q Consensus 107 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 184 (779)
+|++|+|++|.+++.+|...+..+++|++|++++|++++..+... +.++++|++|++++|.+.+..+. ..+.+|+
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~ 203 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLE 203 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCC
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCC
Confidence 999999999999988887445899999999999999987554322 78999999999999998765443 6778999
Q ss_pred EEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCC
Q 046050 185 NISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264 (779)
Q Consensus 185 ~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 264 (779)
+|++++|.+.+.+|. +..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..+.. .+++|++|++++|
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n 279 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCC
Confidence 999999999988887 9999999999999999998888775 79999999999999999876654 8999999999999
Q ss_pred CCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCcccccc-ccCCCCCCEEEccCCcCc
Q 046050 265 FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR-SFNLTNLVTLQLDANQFT 343 (779)
Q Consensus 265 ~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 343 (779)
.+++.+|..++..+++|++|++++|.+++.+|..+. ++++|++|++++|.+.+.+|.. +..+++|++|++++|+++
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG---GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh---cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 999999998887669999999999999988887773 3458999999999999877765 889999999999999999
Q ss_pred cccCccccCCC-CCCEEEccCCccCCCcchhhhC--CCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc
Q 046050 344 GGIPENLLNCS-LLGGLYLSDNHISGKIPKWLGN--LSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS 420 (779)
Q Consensus 344 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 420 (779)
+.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|+.|++++|++++..|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 99999998887 9999999999999988888877 88999999999999999999999999999999999999999988
Q ss_pred CcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCC
Q 046050 421 CFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL 497 (779)
Q Consensus 421 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 497 (779)
.+. +++|+.|++++|.+++..+..+... |++|++++|++++.+|..+.++++|++|++++|++++.+|..+..+++|
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 777 8899999999999999988888766 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCC---CCCCCCcccccccCCCCCCCCcccceEEEEEcC-------
Q 046050 498 QLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG---NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN------- 567 (779)
Q Consensus 498 ~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 567 (779)
++|++++|+++|.+|..+ +.++........ ..+..+...........................
T Consensus 517 ~~L~L~~N~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAEL-------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp CEEECCSSCCEEECCGGG-------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred CEEECCCCcccCcCCHHH-------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 999999999999999887 333222111000 000000000000000000000000000000000
Q ss_pred --------ceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc
Q 046050 568 --------TSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639 (779)
Q Consensus 568 --------~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 639 (779)
.........++.+..++++.|.+.|.+|..++.+++|+.|||++|+++|.+|..|+++++|+.|+|++|+++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 000001122455667889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCC
Q 046050 640 GKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL 687 (779)
Q Consensus 640 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~l 687 (779)
|.+|..++++++|++||+++|+++|.+|..++.+..++.+.+++|+..
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999999999999999999999999999999999999999999754
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-59 Score=544.29 Aligned_cols=594 Identities=21% Similarity=0.177 Sum_probs=488.7
Q ss_pred CcEEeCCCCccc-cC--CCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcc
Q 046050 17 LETLELRDYHLE-LL--NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN 93 (779)
Q Consensus 17 L~~L~Ls~~~~~-~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 93 (779)
-+.+|++++.++ +. -.+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSC
T ss_pred CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCc
Confidence 367888888773 22 13689999999999998888889999999999999999976655 478889999999999999
Q ss_pred cccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecc
Q 046050 94 IGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIE 173 (779)
Q Consensus 94 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 173 (779)
+++..+.+|+++++|++|++++|+++ .+++..|+.+++|++|++++|.+++. +...+.++++|++|++++|.+....+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred cCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCH
Confidence 99766668999999999999999998 66655899999999999999998854 44667889999999999998754433
Q ss_pred cC-CCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhh--hcCCCCCEEECcCCcccccCCCCC
Q 046050 174 SH-SLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL--ENNKELETLLLANNSLSGFFQMPV 250 (779)
Q Consensus 174 ~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l 250 (779)
.. ....+.+|++|++++|.+.+..|..+..+++|+.|+++++.+.+.....+. -..++|++|++++|.+.+..+..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 22 123456899999999999988999999999999999999887643322221 134789999999999999988888
Q ss_pred CCCCC--ccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCc-----ccc
Q 046050 251 NPLKQ--LTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG-----HIF 323 (779)
Q Consensus 251 ~~l~~--L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-----~~~ 323 (779)
..++. |++|++++|.+++..|..+. .+++|++|++++|.+.+..|..+ .++++|+.|++++|...+ .+|
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSL---HGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTT---TTCTTCCEEECTTCBCCC------CC
T ss_pred hccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhh---cCCCCccEEeccchhhhccccccccc
Confidence 88765 99999999999854444444 48999999999999998777665 345589999999875543 122
Q ss_pred ----ccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCC--cchhhhC--CCCCceEEccCCCCCCCcc
Q 046050 324 ----SRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGK--IPKWLGN--LSNLVDIIMPNNHLEGPIP 395 (779)
Q Consensus 324 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~--l~~L~~L~L~~n~l~~~~~ 395 (779)
..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+... .+..|.. .++|+.|++++|++++..|
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 2677899999999999999988888899999999999999986532 2233433 3689999999999998889
Q ss_pred hhhcCCCCCCEEEccCccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCcccc--CcCchhhhc
Q 046050 396 ANLCKLNFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS--GRIPNWIDK 469 (779)
Q Consensus 396 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~--~~~~~~~~~ 469 (779)
..|..+++|+.|++++|.+++.++ ..+. +++|++|++++|++.+..+..+... |+.|++++|.+. +..|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 999999999999999999987665 4555 8899999999999998888877755 999999999987 567889999
Q ss_pred CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 046050 470 LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSP 549 (779)
Q Consensus 470 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (779)
+++|++|++++|++++..+..|..+++|++|++++|++++..+..+.. +...
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~----------------------- 530 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG-----GPIY----------------------- 530 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT-----SCCC-----------------------
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC-----Ccch-----------------------
Confidence 999999999999999888889999999999999999998532211100 0000
Q ss_pred CCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCC
Q 046050 550 SGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE 629 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 629 (779)
....++.|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+
T Consensus 531 -----------------------~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 531 -----------------------FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp -----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred -----------------------hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 001257899999999999955556799999999999999999988888899999999
Q ss_pred EEECCCCcCcCCCchhhh-hcccCcEEEccCCcCcccCCC
Q 046050 630 SLDLSYNMLQGKIPTQLV-ELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 630 ~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~ 668 (779)
.|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus 588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999998888888 799999999999999999875
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-59 Score=542.85 Aligned_cols=586 Identities=22% Similarity=0.234 Sum_probs=489.2
Q ss_pred cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050 36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115 (779)
Q Consensus 36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 115 (779)
+.++.++++++. +|..+. +++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.+|+++++|++|+|++
T Consensus 7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 678899988874 454454 699999999999976544 5799999999999999999999999999999999999999
Q ss_pred CcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC
Q 046050 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF 195 (779)
Q Consensus 116 n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~ 195 (779)
|+++ .+|...|+.+++|++|++++|+++ .++...+.++++|++|++++|.+... +...+..+.+|++|++++|.+++
T Consensus 83 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 83 NELS-QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCC
T ss_pred CccC-ccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccc
Confidence 9999 788768999999999999999997 45657789999999999999988543 44556788899999999999988
Q ss_pred Ccchhhh--CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCC---CCCCCccEEEccCCCCCcCC
Q 046050 196 TFPRFLY--YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPV---NPLKQLTTIDVSKNFIQGHI 270 (779)
Q Consensus 196 ~~~~~l~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~Ls~n~l~~~i 270 (779)
..+..+. .+++|++|++++|.+++..|.. +..+++|+.++++++.+.......+ ...++|+.|++++|.+++..
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred cCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 7777664 5588999999999998655555 4788999999999988754221111 13478999999999998666
Q ss_pred chhhhhcC--CCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCcc----
Q 046050 271 PTGIGAFL--PRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG---- 344 (779)
Q Consensus 271 ~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 344 (779)
|..+.. + ++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|...+
T Consensus 239 ~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 239 NTTFLG-LKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp TTTTGG-GGGSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred hhHhhc-cCcCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 655544 4 359999999999987766655 345589999999999999888899999999999999876543
Q ss_pred -ccC----ccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC--cchhhcC--CCCCCEEEccCccCc
Q 046050 345 -GIP----ENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP--IPANLCK--LNFLTVLDLEVNNIS 415 (779)
Q Consensus 345 -~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~L~~n~l~ 415 (779)
.+| ..+..+++|++|++++|.+++..+..|.++++|++|++++|.+... ....|.. .++|+.|++++|+++
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 223 2678899999999999999998888999999999999999976532 2223333 368999999999999
Q ss_pred ccCCcCcC-CCcccEEEccCCcCcccch-hhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCc--ccCcc
Q 046050 416 GSLPSCFS-SWLLTQVHLSRNKIEGQLE-DVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE--GEVPV 489 (779)
Q Consensus 416 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~ 489 (779)
+..|..+. +++|+.|++++|.+.+..+ ..+... |++|++++|++.+..+..+..+++|+.|++++|.+. +..|.
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 98888777 8899999999999987544 556555 999999999999888889999999999999999987 56788
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCce
Q 046050 490 QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTS 569 (779)
Q Consensus 490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (779)
.|..+++|++|++++|++++..|..+
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~------------------------------------------------------ 500 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDML------------------------------------------------------ 500 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTT------------------------------------------------------
T ss_pred ccccCCCCCEEECCCCCCCcCChhhh------------------------------------------------------
Confidence 99999999999999999985444333
Q ss_pred eeecccccceeeEEeccCCccCCCC--------CccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCC
Q 046050 570 YYYQGRILKIMFGLDLSCNKLTGEI--------PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641 (779)
Q Consensus 570 ~~~~~~~l~~L~~LdLs~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 641 (779)
..++.|+.|++++|++++.. +..+.++++|+.|+|++|+++...+..|.++++|+.|+|++|++++.
T Consensus 501 -----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 501 -----EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp -----TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -----ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 11567999999999998542 23478999999999999999966666899999999999999999988
Q ss_pred CchhhhhcccCcEEEccCCcCcccCCCCCC-cCCCCCCCcccCCCCCCCCCC
Q 046050 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVG-QFATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 642 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~~~l~~~~~~~N~~lc~~~l 692 (779)
.+..|..+++|+.|++++|++++..|..++ .+..++.+.+.|||+.|+|+.
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 888889999999999999999988877665 688899999999999999874
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-56 Score=532.57 Aligned_cols=546 Identities=21% Similarity=0.154 Sum_probs=376.3
Q ss_pred CCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEe
Q 046050 33 TNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILD 112 (779)
Q Consensus 33 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 112 (779)
++|++|+|++|.+++..+.+|..+++|++|+|++|...+.++...+.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 34555555555554444444555555555555555333333223444555555555555555544445555555555555
Q ss_pred CCCCcCcccCCc-hhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCC
Q 046050 113 IASNQITGNISS-SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGC 191 (779)
Q Consensus 113 Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n 191 (779)
|++|.+++.++. ..++.+++|++|++++|.++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~----------------------------------------------- 136 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR----------------------------------------------- 136 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-----------------------------------------------
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCccc-----------------------------------------------
Confidence 555555433332 12444455555555554443
Q ss_pred cCCCCc-chhhhCCCCCCEEEccCCCCCCcCchhhhhcC--CCCCEEECcCCcccccCCCCCCCCCC------ccEEEcc
Q 046050 192 RCDFTF-PRFLYYQHELRYVDLSHMNLRGEFPNWLLENN--KELETLLLANNSLSGFFQMPVNPLKQ------LTTIDVS 262 (779)
Q Consensus 192 ~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~l~~l~~------L~~L~Ls 262 (779)
+.. +..+..+++|++|++++|.+++..+..+ ..+ ++|+.|++++|.+.+..+..+..+.+ |++|+++
T Consensus 137 ---~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 137 ---SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp ---CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred ---ccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 222 2345556666666666666654444443 333 56666666666666555555444443 7777777
Q ss_pred CCCCCcCCchhhhhcC--CCCCEEEccCCcC---------CcccCcccccccCCccccEEEccCCcCCccccccccCCCC
Q 046050 263 KNFIQGHIPTGIGAFL--PRLEHFNISRNVL---------NGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTN 331 (779)
Q Consensus 263 ~n~l~~~i~~~~~~~l--~~L~~L~l~~n~l---------~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 331 (779)
+|.+++.++..+.... .+++.+.++.+.. .+..+..+.. ...++|+.|++++|.+.+..+..+..+++
T Consensus 213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 291 (844)
T 3j0a_A 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLNSRVFETLKD 291 (844)
T ss_dssp SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT-TTTSCCCEEECTTCCCCEECSCCSSSCCC
T ss_pred CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc-cccCCccEEECCCCcccccChhhhhcCCC
Confidence 7777666665554422 4567777663322 2211222211 01248999999999999888888999999
Q ss_pred CCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 046050 332 LVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEV 411 (779)
Q Consensus 332 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 411 (779)
|+.|++++|++.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 99999999999988888899999999999999999988889999999999999999999988888899999999999999
Q ss_pred ccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcC-chhhhcCCCCcEEEccCCcCcccCcc-
Q 046050 412 NNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI-PNWIDKLSHLSYLILANNNLEGEVPV- 489 (779)
Q Consensus 412 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~- 489 (779)
|.+++... +++|+.+++++|+++..+.. ...++.|++++|++++.. +..+..+++|++|+|++|++++..+.
T Consensus 372 N~l~~i~~----~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 372 NALTTIHF----IPSIPDIFLSGNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CCSCCCSS----CCSCSEEEEESCCCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred CCCCcccC----CCCcchhccCCCCccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 99885332 67899999999999866543 233899999999998643 23456899999999999999865543
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCce
Q 046050 490 QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTS 569 (779)
Q Consensus 490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (779)
.+..+++|+.|++++|.+++..+..... ..
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-----~~--------------------------------------------- 475 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCW-----DV--------------------------------------------- 475 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCS-----SC---------------------------------------------
T ss_pred ccccCCccccccCCCCccccccccccch-----hh---------------------------------------------
Confidence 4567899999999999997432221100 00
Q ss_pred eeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhc
Q 046050 570 YYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL 649 (779)
Q Consensus 570 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 649 (779)
...++.|+.|||++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|+|++|++++.+|..|
T Consensus 476 ----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--- 546 (844)
T 3j0a_A 476 ----FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--- 546 (844)
T ss_dssp ----SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---
T ss_pred ----hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---
Confidence 01257899999999999988889999999999999999999987777765 899999999999999998775
Q ss_pred ccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 046050 650 YALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNG 700 (779)
Q Consensus 650 ~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l~~~c~~~~ 700 (779)
.+|+.|++++|++.|.|+- .+|..+...++..+|+.+....|..+.
T Consensus 547 ~~L~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 547 VSLSVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp SSCCEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred CCcCEEEecCCCccccccc-----HHHHHHHHhcCcccccccccCccCCch
Confidence 4789999999999998874 223333345677778777777886443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.3e-55 Score=500.01 Aligned_cols=534 Identities=18% Similarity=0.162 Sum_probs=397.5
Q ss_pred EEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCC
Q 046050 37 VLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN 116 (779)
Q Consensus 37 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 116 (779)
+++.++..++ .+|..+.. ++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.+|+++++|++|+|++|
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 4555555554 33443432 56777777777654444 35666777777777777776666666777777777777777
Q ss_pred cCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC
Q 046050 117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT 196 (779)
Q Consensus 117 ~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 196 (779)
++++..|. .|+.+++|++|++++|++++ ++...+ ..+.+|++|++++|.+.+.
T Consensus 92 ~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-l~~~~~-------------------------~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 92 PLIFMAET-ALSGPKALKHLFFIQTGISS-IDFIPL-------------------------HNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp CCSEECTT-TTSSCTTCCEEECTTSCCSC-GGGSCC-------------------------TTCTTCCEEECCSSCCCCC
T ss_pred cccccChh-hhcccccccEeeccccCccc-CCcchh-------------------------ccCCcccEEECCCCccccc
Confidence 77633333 66677777777777776653 111222 3333455555555555543
Q ss_pred cchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCC--EEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhh
Q 046050 197 FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELE--TLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGI 274 (779)
Q Consensus 197 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~--~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~ 274 (779)
.+..+..+++|++|++++|.+++..+.. ++.+++|+ +|++++|.+.+..+..+.. .+|+.|++++|. .++..+
T Consensus 145 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~ 219 (606)
T 3t6q_A 145 KLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF 219 (606)
T ss_dssp CCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHH
T ss_pred CcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHh
Confidence 3233334777777777777777333433 46777777 7778888777766655543 578888888775 233333
Q ss_pred hhcCCCCCEEEccCCcCCcccCccc--ccccCCc--cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccc
Q 046050 275 GAFLPRLEHFNISRNVLNGSIPCSL--HMTMGCF--SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL 350 (779)
Q Consensus 275 ~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 350 (779)
.. +..+....+....+.......+ ..+.++. +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+
T Consensus 220 ~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l 297 (606)
T 3t6q_A 220 KG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297 (606)
T ss_dssp HH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC
T ss_pred hh-ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh
Confidence 33 4444433333322221111111 1111111 6899999999999888888999999999999999998 788889
Q ss_pred cCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcch-hhcCCCCCCEEEccCccCcccC--CcCcC-CCc
Q 046050 351 LNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPA-NLCKLNFLTVLDLEVNNISGSL--PSCFS-SWL 426 (779)
Q Consensus 351 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~-~~~ 426 (779)
.++++|++|++++|++++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+. +++
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 9999999999999999988888899999999999999998866554 4889999999999999998765 54454 889
Q ss_pred ccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEcc
Q 046050 427 LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503 (779)
Q Consensus 427 L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 503 (779)
|++|++++|++.+..+..+... |+.|++++|++++..+ ..+..+++|++|++++|++.+..|..+..+++|++|+++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 9999999999998888877655 9999999999987765 448899999999999999998889999999999999999
Q ss_pred CCcCcccC-C--chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeeccccccee
Q 046050 504 HNNLSGTI-P--SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIM 580 (779)
Q Consensus 504 ~N~l~~~~-p--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 580 (779)
+|++++.. | ..+ ..+++|
T Consensus 458 ~n~l~~~~~~~~~~~-----------------------------------------------------------~~l~~L 478 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSL-----------------------------------------------------------QTLGRL 478 (606)
T ss_dssp TCBCGGGEECSSCGG-----------------------------------------------------------GGCTTC
T ss_pred CCCCCccccccchhh-----------------------------------------------------------ccCCCc
Confidence 99997522 2 111 125789
Q ss_pred eEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050 581 FGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660 (779)
Q Consensus 581 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 660 (779)
+.|++++|++++..|..++.+++|+.|+|++|++++..|..+.++++| .|++++|++++..|..+..+++|++|++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 999999999998889999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCcccCCC
Q 046050 661 NLSGKVPD 668 (779)
Q Consensus 661 ~l~~~~p~ 668 (779)
+++|.|+.
T Consensus 558 ~~~c~c~~ 565 (606)
T 3t6q_A 558 PLDCTCSN 565 (606)
T ss_dssp CEECSGGG
T ss_pred CccccCCc
Confidence 99998875
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-56 Score=524.69 Aligned_cols=531 Identities=20% Similarity=0.183 Sum_probs=414.8
Q ss_pred EEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEccc
Q 046050 61 HLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140 (779)
Q Consensus 61 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~ 140 (779)
..+.+++.++ .+|. ..++|++|+|++|.|++..+..|.++++|++|+|++|...+.+++..|+++++|++|+|++
T Consensus 8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 4555555553 2331 2356666666666666655666666666666666666544455444566666666666666
Q ss_pred ccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchh--hhCCCCCCEEEccCCCCC
Q 046050 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF--LYYQHELRYVDLSHMNLR 218 (779)
Q Consensus 141 n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~--l~~~~~L~~L~Ls~n~l~ 218 (779)
|.+++.. +..+.++.+|++|+|++|.+.+..|.. +..+++|++|++++|.++
T Consensus 83 N~l~~~~--------------------------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 83 SKIYFLH--------------------------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp CCCCEEC--------------------------TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred CcCcccC--------------------------HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 6655221 122333334555555555555444443 788899999999999998
Q ss_pred CcCchhhhhcCCCCCEEECcCCcccccCCCCCCCC--CCccEEEccCCCCCcCCchhhhhcCC------CCCEEEccCCc
Q 046050 219 GEFPNWLLENNKELETLLLANNSLSGFFQMPVNPL--KQLTTIDVSKNFIQGHIPTGIGAFLP------RLEHFNISRNV 290 (779)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~------~L~~L~l~~n~ 290 (779)
+..+...++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|+.|++++|.
T Consensus 137 ~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCC
T ss_pred ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCc
Confidence 66555556899999999999999998888888777 89999999999998777765443 33 49999999999
Q ss_pred CCcccCcccccccCCccccEEEccCC---------cCCccccccccCC--CCCCEEEccCCcCccccCccccCCCCCCEE
Q 046050 291 LNGSIPCSLHMTMGCFSLQILALSNN---------SLQGHIFSRSFNL--TNLVTLQLDANQFTGGIPENLLNCSLLGGL 359 (779)
Q Consensus 291 l~~~~~~~~~~~~~~~~L~~L~ls~n---------~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 359 (779)
+++..+..+........++.+.++.+ .+.+.....+.++ ++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 99888877743333347888888743 3333334445444 789999999999998888999999999999
Q ss_pred EccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCc
Q 046050 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIE 438 (779)
Q Consensus 360 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 438 (779)
++++|++++..|..|..+++|++|++++|.+++..+..|.++++|+.|++++|++.+..+..+. +++|+.|++++|.++
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 9999999988899999999999999999999988899999999999999999999988887777 889999999999998
Q ss_pred ccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccC-cccccCCCCCCEEEccCCcCcccCCchhhh
Q 046050 439 GQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEV-PVQLCLLKQLQLIDLSHNNLSGTIPSCLYK 517 (779)
Q Consensus 439 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 517 (779)
+... ...|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+...+
T Consensus 376 ~i~~---~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 447 (844)
T 3j0a_A 376 TIHF---IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP- 447 (844)
T ss_dssp CCSS---CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-
T ss_pred cccC---CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-
Confidence 7654 334999999999998 44543 568999999999998753 33456899999999999999854332110
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccC-----C
Q 046050 518 TALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLT-----G 592 (779)
Q Consensus 518 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~ 592 (779)
..+++|+.|++++|.++ +
T Consensus 448 ---------------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 448 ---------------------------------------------------------SENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp ---------------------------------------------------------CSCTTCCBCEEESCCCSSSCCSC
T ss_pred ---------------------------------------------------------ccCCccccccCCCCccccccccc
Confidence 01467899999999997 4
Q ss_pred CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCc
Q 046050 593 EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672 (779)
Q Consensus 593 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 672 (779)
..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|++|++++|++++.+|..
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--- 545 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--- 545 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH---
Confidence 5567799999999999999999999999999999999999999999988777766 89999999999999999975
Q ss_pred CCCCCCCcccCCCCCCCCCCC
Q 046050 673 FATFTENSYDGNSLLCGQPLS 693 (779)
Q Consensus 673 ~~~l~~~~~~~N~~lc~~~l~ 693 (779)
+..+..+.+.|||+.|+|++.
T Consensus 546 ~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 546 FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CSSCCEEEEEEECCCCSSSCC
T ss_pred hCCcCEEEecCCCcccccccH
Confidence 457788899999999999863
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-54 Score=493.19 Aligned_cols=534 Identities=20% Similarity=0.174 Sum_probs=436.5
Q ss_pred cCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEc
Q 046050 59 VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138 (779)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L 138 (779)
-++++.++..+. .+|. .+. .++++|++++|.+++..|..|+++++|++|+|++|+++ .+++..|+++++|++|++
T Consensus 14 ~~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeC
Confidence 347888888775 4452 343 47899999999999888889999999999999999998 454448999999999999
Q ss_pred ccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCC
Q 046050 139 SNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLR 218 (779)
Q Consensus 139 s~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 218 (779)
++|++++. ....+..+.+|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 89 s~n~l~~~--------------------------~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 89 TANPLIFM--------------------------AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142 (606)
T ss_dssp TTCCCSEE--------------------------CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred CCCccccc--------------------------ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc
Confidence 99988732 2233455568889999999988776778889999999999999988
Q ss_pred Cc-CchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCcc--EEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCccc
Q 046050 219 GE-FPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT--TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI 295 (779)
Q Consensus 219 ~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 295 (779)
+. .|.. ..+++|++|++++|.+++..+..+..+++|+ +|++++|.++ .++...+. ...|+.|++++|.. .
T Consensus 143 ~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~~~~---~ 215 (606)
T 3t6q_A 143 SIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFD-SAVFQSLNFGGTQN---L 215 (606)
T ss_dssp CCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC-EECTTTTT-TCEEEEEECTTCSC---H
T ss_pred ccCcccc--cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC-ccChhHhh-hccccccccCCchh---H
Confidence 52 2443 3488999999999999888777788888888 8899999998 44445554 46889999988862 2
Q ss_pred CcccccccCCccccEEEccCC---cCCccccccccCCC--CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCc
Q 046050 296 PCSLHMTMGCFSLQILALSNN---SLQGHIFSRSFNLT--NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKI 370 (779)
Q Consensus 296 ~~~~~~~~~~~~L~~L~ls~n---~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 370 (779)
+..+.... ...++.+.+... ......+..+..+. +|+.|++++|.+++..+..|..+++|++|++++|+++ .+
T Consensus 216 ~~~~~~l~-~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 216 LVIFKGLK-NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHTT-TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHhhhcc-ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence 22221111 012344443322 11112223333333 7999999999999888888999999999999999999 77
Q ss_pred chhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc-CcC-CCcccEEEccCCcCcccc--hhhHh
Q 046050 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CFS-SWLLTQVHLSRNKIEGQL--EDVFG 446 (779)
Q Consensus 371 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~~~L~~L~l~~n~l~~~~--~~~~~ 446 (779)
|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++. .+. +++|++|++++|.+++.. +..+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 88899999999999999999988888999999999999999999866654 354 889999999999999876 55555
Q ss_pred hc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc-cccCCCCCCEEEccCCcCcccCCchhhhhccCCC
Q 046050 447 DI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV-QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEG 523 (779)
Q Consensus 447 ~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~ 523 (779)
.. |++|++++|++.+..|..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+++..|..+ +
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~ 446 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-------D 446 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-------T
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-------h
Confidence 54 99999999999988899999999999999999999977654 48999999999999999987666554 1
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCC---CCccccC
Q 046050 524 NYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE---IPFQIGY 600 (779)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---~p~~l~~ 600 (779)
.+++|++|++++|++++. .+..+..
T Consensus 447 ----------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 447 ----------------------------------------------------GLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp ----------------------------------------------------TCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred ----------------------------------------------------CCCCCCEEECCCCCCCccccccchhhcc
Confidence 157899999999999862 3467899
Q ss_pred cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCc
Q 046050 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENS 680 (779)
Q Consensus 601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~ 680 (779)
+++|+.|++++|++++..|..|+++++|+.|+|++|++++..|..+..++.| +|++++|++++.+|..++.+..++.+.
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 9999999999999999999999999999999999999999999999999999 999999999998888788889999999
Q ss_pred ccCCCCCCCCCC
Q 046050 681 YDGNSLLCGQPL 692 (779)
Q Consensus 681 ~~~N~~lc~~~l 692 (779)
+.|||+.|+|+.
T Consensus 554 l~~N~~~c~c~~ 565 (606)
T 3t6q_A 554 LRQNPLDCTCSN 565 (606)
T ss_dssp CTTCCEECSGGG
T ss_pred CCCCCccccCCc
Confidence 999999998863
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-53 Score=488.34 Aligned_cols=530 Identities=19% Similarity=0.159 Sum_probs=385.6
Q ss_pred cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050 36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115 (779)
Q Consensus 36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 115 (779)
++++.+++.++. +|..+. +++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.+|+++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 456666666653 333332 567777777777754444 3566777777777777777766666777777777777777
Q ss_pred CcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC
Q 046050 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF 195 (779)
Q Consensus 116 n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~ 195 (779)
|++++..|. .|+++++|++|++++|++++ ++ ...+..+.+|++|++++|.+.+
T Consensus 90 n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~-~~-------------------------~~~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 90 NPIQSFSPG-SFSGLTSLENLVAVETKLAS-LE-------------------------SFPIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp CCCCCCCTT-SSTTCTTCCEEECTTSCCCC-SS-------------------------SSCCTTCTTCCEEECCSSCCCC
T ss_pred CcccccChh-hcCCcccCCEEEccCCcccc-cc-------------------------ccccCCCCCCCEEeCCCCcccc
Confidence 777633243 67777777777777776652 11 1223344466666666666654
Q ss_pred -CcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCC----CCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCC
Q 046050 196 -TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKE----LETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHI 270 (779)
Q Consensus 196 -~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~----L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i 270 (779)
.+|..+..+++|++|++++|.+++..+..+ +.+++ +++|++++|.+.+..+..+... +|++|++++|.+.+..
T Consensus 143 ~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~ 220 (606)
T 3vq2_A 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI 220 (606)
T ss_dssp CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHH
T ss_pred eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhH
Confidence 468889999999999999999985545433 44444 4589999999998777666655 8999999999887443
Q ss_pred chhhhhcCCCCCEEEccCCcCCccc------CcccccccCCccccEEEc-cCCcCCccccccccCCCCCCEEEccCCcCc
Q 046050 271 PTGIGAFLPRLEHFNISRNVLNGSI------PCSLHMTMGCFSLQILAL-SNNSLQGHIFSRSFNLTNLVTLQLDANQFT 343 (779)
Q Consensus 271 ~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 343 (779)
.......++.++.+++..+.+.+.. +..+..... .+++.+++ ..+.+.+..+. +..+++|+.|++++|.+.
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~-l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 298 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD-VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK 298 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG-SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC
T ss_pred HHHHhccccccccccccccccccCCcccccChHHhhhhhh-ccHhheeccccccccccccc-cccCCCCCEEEecCccch
Confidence 3334444888988888655443211 111111111 15777777 66778877776 888899999999999987
Q ss_pred cccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccC--CcC
Q 046050 344 GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL--PSC 421 (779)
Q Consensus 344 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~ 421 (779)
.+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|+.|++++|.+++.. +..
T Consensus 299 -~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 299 -YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp -CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred -hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhh
Confidence 455 788889999999999999 46774 4 8899999999999654333 5678899999999999888662 443
Q ss_pred cC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCcccccCCCCC
Q 046050 422 FS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL 497 (779)
Q Consensus 422 ~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 497 (779)
+. +++|++|++++|.+++.+ ..+... |+.|++++|++.+..+ ..+..+++|++|++++|++.+..|..+..+++|
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 33 788899999888887755 334333 8888888888887766 678888888888888888888888888888888
Q ss_pred CEEEccCCcCccc-CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccc
Q 046050 498 QLIDLSHNNLSGT-IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRI 576 (779)
Q Consensus 498 ~~L~Ls~N~l~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (779)
++|++++|++++. +|..+ + .
T Consensus 451 ~~L~l~~n~l~~~~~~~~~-------~----------------------------------------------------~ 471 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVF-------A----------------------------------------------------N 471 (606)
T ss_dssp CEEECTTCEEGGGEECSCC-------T----------------------------------------------------T
T ss_pred CEEECCCCcCCCcchHHhh-------c----------------------------------------------------c
Confidence 8888888888763 44433 1 1
Q ss_pred cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc-cCcEE
Q 046050 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY-ALAIF 655 (779)
Q Consensus 577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L 655 (779)
+++|+.|++++|++++..|..++.+++|+.|+|++|++++.+|..|.++++|+.|+|++|+++ .+|..+..++ +|++|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 467888888888888888888888888888888888888888888888888888888888888 6677788886 58888
Q ss_pred EccCCcCcccCCC
Q 046050 656 SVAHNNLSGKVPD 668 (779)
Q Consensus 656 ~ls~N~l~~~~p~ 668 (779)
++++|++.|.++.
T Consensus 551 ~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 551 NLTNNSVACICEH 563 (606)
T ss_dssp ECCSCCCCCSSTT
T ss_pred EccCCCcccCCcc
Confidence 8888888887775
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.9e-53 Score=484.46 Aligned_cols=530 Identities=18% Similarity=0.157 Sum_probs=439.8
Q ss_pred CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050 58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR 137 (779)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~ 137 (779)
.-++++.+++.+. .+|. .+. ++|++|++++|.+++..+..|+++++|++|++++|+++ .+++..|+++++|++|+
T Consensus 12 ~~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCCceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeE
Confidence 3468999999885 4553 343 78999999999999888889999999999999999999 55554899999999999
Q ss_pred cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCC
Q 046050 138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNL 217 (779)
Q Consensus 138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 217 (779)
+++|++++..+ ..+..+.+|++|++++|.+.+..+..++.+++|++|++++|.+
T Consensus 87 Ls~n~l~~~~p--------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 87 LTGNPIQSFSP--------------------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp CTTCCCCCCCT--------------------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred CCCCcccccCh--------------------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence 99999874222 3344555777888888888877778899999999999999999
Q ss_pred CC-cCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCcc----EEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCC
Q 046050 218 RG-EFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT----TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292 (779)
Q Consensus 218 ~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~ 292 (779)
++ .+|..+ +++++|++|++++|++++..+..+..+.+|+ +|++++|.++ .++...+.. .+|+.|++++|.+.
T Consensus 141 ~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 141 HSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNS 217 (606)
T ss_dssp CCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSC
T ss_pred cceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccc
Confidence 85 567765 7999999999999999998888887776655 8999999998 777777764 48999999999887
Q ss_pred c-ccCcccccccCCccccEEEccCCcCCc------cccccccCCC--CCCEEEc-cCCcCccccCccccCCCCCCEEEcc
Q 046050 293 G-SIPCSLHMTMGCFSLQILALSNNSLQG------HIFSRSFNLT--NLVTLQL-DANQFTGGIPENLLNCSLLGGLYLS 362 (779)
Q Consensus 293 ~-~~~~~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~ 362 (779)
+ ..|..+ .++..++.+++..+.+.+ .....+..+. .++.+++ ..+.+.+..|. +..+++|+.|+++
T Consensus 218 ~~~~~~~~---~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 218 SNIMKTCL---QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLA 293 (606)
T ss_dssp HHHHHHHH---HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEE
T ss_pred hhHHHHHh---ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEec
Confidence 4 333333 344478877776544332 1112222222 4667777 67788877776 8999999999999
Q ss_pred CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccc-
Q 046050 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQL- 441 (779)
Q Consensus 363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~- 441 (779)
+|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.. ....+++|++|++++|.+++..
T Consensus 294 ~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 294 GVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp SCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEE
T ss_pred Cccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcc
Confidence 99997 455 788999999999999999 5777 45 9999999999999766544 3345889999999999999874
Q ss_pred -hhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCCchhhh
Q 046050 442 -EDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIPSCLYK 517 (779)
Q Consensus 442 -~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 517 (779)
+..+... |++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 444 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-- 444 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--
T ss_pred hhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--
Confidence 5566555 9999999999985 56788999999999999999998877 789999999999999999997777655
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC-CCCc
Q 046050 518 TALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG-EIPF 596 (779)
Q Consensus 518 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~ 596 (779)
+ .+++|++|++++|++++ .+|.
T Consensus 445 -----~----------------------------------------------------~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 445 -----L----------------------------------------------------GLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp -----T----------------------------------------------------TCTTCCEEECTTCEEGGGEECS
T ss_pred -----c----------------------------------------------------CCCCCCEEECCCCcCCCcchHH
Confidence 1 15689999999999997 4789
Q ss_pred cccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCC-C
Q 046050 597 QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFA-T 675 (779)
Q Consensus 597 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~ 675 (779)
.++.+++|+.|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|++++|+++ .+|..+..+. .
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~ 546 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKS 546 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 5776677776 5
Q ss_pred CCCCcccCCCCCCCCCC
Q 046050 676 FTENSYDGNSLLCGQPL 692 (779)
Q Consensus 676 l~~~~~~~N~~lc~~~l 692 (779)
++.+.+.+||+.|+|+.
T Consensus 547 L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 547 LAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSCCCCCSSTT
T ss_pred CcEEEccCCCcccCCcc
Confidence 89999999999999976
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=443.63 Aligned_cols=515 Identities=18% Similarity=0.173 Sum_probs=348.8
Q ss_pred cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050 36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115 (779)
Q Consensus 36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 115 (779)
++++.++.+++. +|..+. +++++|++++|.+.+..+ ..+..+++|++|++++|++++..+.+|+++++|++|++++
T Consensus 10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 345555555542 333332 367777777777754443 3567777777777777777766666777777777777777
Q ss_pred CcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC
Q 046050 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF 195 (779)
Q Consensus 116 n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~ 195 (779)
|+++ .+++..|+.+++|++|++++|++++ ++ ...+..+.+|++|++++|.+.+
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~-------------------------~~~~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 86 NPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LE-------------------------NFPIGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp CCCC-EECTTTTTTCTTCCEEECTTSCCCC-ST-------------------------TCSCTTCTTCCEEECCSSCCCC
T ss_pred CcCC-ccCHhhhcCcccccccccccccccc-CC-------------------------CccccccccccEEecCCCccce
Confidence 7777 4554467777777777777777652 22 1123444466666666666665
Q ss_pred -CcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCC----CEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcC-
Q 046050 196 -TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKEL----ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGH- 269 (779)
Q Consensus 196 -~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~- 269 (779)
.+|..+.++++|++|++++|.+++..+.. ++.+++| +.+++++|.+.+..+..+... +|+.|++++|.....
T Consensus 139 ~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~ 216 (570)
T 2z63_A 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216 (570)
T ss_dssp CCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH
T ss_pred ecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc
Confidence 46888999999999999999998544444 4667777 899999999998888777766 899999999865422
Q ss_pred CchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCC-cCccccCc
Q 046050 270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDAN-QFTGGIPE 348 (779)
Q Consensus 270 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 348 (779)
++..+. .++.++...+....+.... .++. +....+ ..+..+ .++.++++++ .+.+..+.
T Consensus 217 ~~~~~~-~l~~l~~~~l~~~~~~~~~-----------~l~~--~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 217 MKTCIQ-GLAGLEVHRLVLGEFRNEG-----------NLEK--FDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp HHHHHH-TTTTCEEEEEEEEECCCCS-----------SCEE--CCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTT
T ss_pred hhhhhc-CccccceeeeccccccCch-----------hhhh--cchhhh-----cccccc-chhhhhhhcchhhhhhchh
Confidence 333333 3667776655433322100 0110 000111 011111 2344455544 44444555
Q ss_pred cccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCccc
Q 046050 349 NLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT 428 (779)
Q Consensus 349 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~ 428 (779)
.+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~ 350 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLE 350 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCC
T ss_pred hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCC
Confidence 5555566666666666655 345555555 6666666666655 3333 3456666666666666544443 3456666
Q ss_pred EEEccCCcCcccc--hhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEcc
Q 046050 429 QVHLSRNKIEGQL--EDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLS 503 (779)
Q Consensus 429 ~L~l~~n~l~~~~--~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls 503 (779)
+|++++|.+++.. +..+... |+.|++++|.+.+..+. +..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 6666666666553 3444433 78888888887755444 7888999999999999887665 568888999999999
Q ss_pred CCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEE
Q 046050 504 HNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGL 583 (779)
Q Consensus 504 ~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 583 (779)
+|++.+..|..+ . .+++|+.|
T Consensus 430 ~n~l~~~~~~~~-------~----------------------------------------------------~l~~L~~L 450 (570)
T 2z63_A 430 HTHTRVAFNGIF-------N----------------------------------------------------GLSSLEVL 450 (570)
T ss_dssp TSCCEECCTTTT-------T----------------------------------------------------TCTTCCEE
T ss_pred CCcccccchhhh-------h----------------------------------------------------cCCcCcEE
Confidence 999886666544 1 14678889
Q ss_pred eccCCccC-CCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcC
Q 046050 584 DLSCNKLT-GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL 662 (779)
Q Consensus 584 dLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 662 (779)
++++|.++ +.+|..+..+++|+.|++++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999987 57888999999999999999999988899999999999999999999988888899999999999999999
Q ss_pred cccCCCC
Q 046050 663 SGKVPDR 669 (779)
Q Consensus 663 ~~~~p~~ 669 (779)
+|.||..
T Consensus 531 ~~~~~~~ 537 (570)
T 2z63_A 531 DCSCPRI 537 (570)
T ss_dssp CCCTTTT
T ss_pred cCCCcch
Confidence 9999873
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-48 Score=438.25 Aligned_cols=485 Identities=17% Similarity=0.193 Sum_probs=344.1
Q ss_pred EEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCC
Q 046050 37 VLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN 116 (779)
Q Consensus 37 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 116 (779)
+.+.+++.++. +|..+. ++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|.+|+++++|++|++++|
T Consensus 9 ~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCcccc-ccccCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 34555555553 333332 466777777776654444 35666777777777777776666666777777777777777
Q ss_pred cCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC
Q 046050 117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT 196 (779)
Q Consensus 117 ~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 196 (779)
+++ .++...|+.+++|++|++++|++++. .
T Consensus 85 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------------------------------------------~ 114 (549)
T 2z81_A 85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTL-------------------------------------------------G 114 (549)
T ss_dssp CCC-SCCHHHHTTCTTCCEEECTTCCCSSS-------------------------------------------------C
T ss_pred ccC-ccCHHHhccCCCCcEEECCCCccccc-------------------------------------------------c
Confidence 776 44543566677777777776665420 1
Q ss_pred cchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhh
Q 046050 197 FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGA 276 (779)
Q Consensus 197 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~ 276 (779)
.|..+..+++|++|++++|.+.+.+|...+.++++|++|++++|++++..+..+..+++|++|++++|.+. .+|..++.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD 193 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHH
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHh
Confidence 23455667778888888887544666544578888888889888888888888889999999999999887 77877766
Q ss_pred cCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccc----cccCCCCCCEEEccCCcCcccc------
Q 046050 277 FLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS----RSFNLTNLVTLQLDANQFTGGI------ 346 (779)
Q Consensus 277 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~------ 346 (779)
.+++|++|++++|.+++...........+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+..
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 688999999999998864322222233455889999999988764433 3356788899999988876431
Q ss_pred CccccCCCCCCEEEccCCccCCC-----cchhhhCCCCCceEEccCCCCCCCcchhh-cCCCCCCEEEccCccCcccCCc
Q 046050 347 PENLLNCSLLGGLYLSDNHISGK-----IPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPS 420 (779)
Q Consensus 347 ~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~ 420 (779)
...+..+++++.|++.++.+... .+..+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|++++..|.
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence 12345667788888887776532 1222334456777777777766 444444 4577777777777776654321
Q ss_pred ---CcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCc--hhhhcCCCCcEEEccCCcCcccCcccccCC
Q 046050 421 ---CFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP--NWIDKLSHLSYLILANNNLEGEVPVQLCLL 494 (779)
Q Consensus 421 ---~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 494 (779)
.+. +++|++ |++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 353 ~~~~~~~l~~L~~----------------------L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 353 NSACKGAWPSLQT----------------------LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHTCTTSSTTCCE----------------------EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred chhhhhccccCcE----------------------EEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 121 444444 4555555443321 45778899999999999998 577788889
Q ss_pred CCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecc
Q 046050 495 KQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQG 574 (779)
Q Consensus 495 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (779)
++|++|++++|+++ .+|..+
T Consensus 410 ~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------------------- 429 (549)
T 2z81_A 410 EKMRFLNLSSTGIR-VVKTCI----------------------------------------------------------- 429 (549)
T ss_dssp TTCCEEECTTSCCS-CCCTTS-----------------------------------------------------------
T ss_pred ccccEEECCCCCcc-cccchh-----------------------------------------------------------
Confidence 99999999999987 444332
Q ss_pred cccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcE
Q 046050 575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAI 654 (779)
Q Consensus 575 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 654 (779)
++.|+.||+++|++++.+ ..+++|+.|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|++
T Consensus 430 --~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 430 --PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp --CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred --cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 346889999999999643 57899999999999999 6776 568999999999999999999999999999999
Q ss_pred EEccCCcCcccCCC
Q 046050 655 FSVAHNNLSGKVPD 668 (779)
Q Consensus 655 L~ls~N~l~~~~p~ 668 (779)
|++++|+++|.||.
T Consensus 502 L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 502 IWLHTNPWDCSCPR 515 (549)
T ss_dssp EECCSSCBCCCHHH
T ss_pred EEecCCCccCCCcc
Confidence 99999999999984
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-47 Score=434.55 Aligned_cols=511 Identities=19% Similarity=0.205 Sum_probs=375.1
Q ss_pred cCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEc
Q 046050 59 VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138 (779)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L 138 (779)
.++++.++..+. .+|. .+ .+++++|++++|.+++..+.+|.++++|++|++++|+++ .++...|+.+++|++|++
T Consensus 9 ~~~~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCS-SCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCcc-ccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeC
Confidence 456777776664 3442 33 357899999999998888888999999999999999988 566557888899999999
Q ss_pred ccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCC
Q 046050 139 SNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLR 218 (779)
Q Consensus 139 s~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 218 (779)
++|++++ ++...+..+.+|++|++++|.+....+..++.+++|++|++++|.++
T Consensus 84 ~~n~l~~--------------------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 84 TGNPIQS--------------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp TTCCCCE--------------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred cCCcCCc--------------------------cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccc
Confidence 9888762 22223344446666666666665444444556666666666666655
Q ss_pred C-cCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCc----cEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCc
Q 046050 219 G-EFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQL----TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG 293 (779)
Q Consensus 219 ~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~ 293 (779)
+ .+|..+ +++++|++|++++|++++..+..+..+++| +.+++++|.++ .++...+... +|+.|++++|....
T Consensus 138 ~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 138 SFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSL 214 (570)
T ss_dssp CCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCT
T ss_pred eecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccc
Confidence 3 244443 455566666666665555544444444444 45555555555 2333333212 44444444442211
Q ss_pred ccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcC------ccccCccccCCC--CCCEEEccCC-
Q 046050 294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQF------TGGIPENLLNCS--LLGGLYLSDN- 364 (779)
Q Consensus 294 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~~~~l~--~L~~L~L~~n- 364 (779)
...+..+..++.++.+.+....+ .......+.+++ .++.++++++
T Consensus 215 --------------------------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 215 --------------------------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp --------------------------THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred --------------------------cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 12233344445544444332211 111112222222 3677888877
Q ss_pred ccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhh
Q 046050 365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDV 444 (779)
Q Consensus 365 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 444 (779)
.+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+..
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccccccc
Confidence 777788999999999999999999998 678888888 9999999999998 4443 35789999999999988776653
Q ss_pred HhhcceEEEccCccccCcC--chhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050 445 FGDILVTLDLSYNRFSGRI--PNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE 522 (779)
Q Consensus 445 ~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 522 (779)
....|++|++++|++++.. +..+..+++|++|++++|++.+..+. +..+++|+.|++++|++.+..|...+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~------ 417 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF------ 417 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT------
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh------
Confidence 3334999999999998654 78899999999999999999976555 99999999999999999865553221
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcc
Q 046050 523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN 602 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 602 (779)
..+++|+.|++++|.+++..|..+..++
T Consensus 418 ----------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 418 ----------------------------------------------------LSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp ----------------------------------------------------TTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ----------------------------------------------------hcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 1157899999999999999999999999
Q ss_pred cCcEEEcCCCcCC-ccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcc
Q 046050 603 MIRALNLSHNNLM-GTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY 681 (779)
Q Consensus 603 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~ 681 (779)
+|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|..+..+..++.+.+
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 9999999999998 679999999999999999999999999999999999999999999999988888889999999999
Q ss_pred cCCCCCCCCCC
Q 046050 682 DGNSLLCGQPL 692 (779)
Q Consensus 682 ~~N~~lc~~~l 692 (779)
.+|++.|.|+.
T Consensus 526 ~~N~~~~~~~~ 536 (570)
T 2z63_A 526 HTNPWDCSCPR 536 (570)
T ss_dssp CSSCBCCCTTT
T ss_pred cCCcccCCCcc
Confidence 99999998864
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-46 Score=421.78 Aligned_cols=489 Identities=15% Similarity=0.142 Sum_probs=346.8
Q ss_pred CCCCcEEeCCCCccc-cC--CCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEcc
Q 046050 14 FPNLETLELRDYHLE-LL--NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIG 90 (779)
Q Consensus 14 ~~~L~~L~Ls~~~~~-~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 90 (779)
|+...+.|++++.++ +. -.++|++|++++|++++..+.+|..+++|++|++++|++.+..+ ..++.+++|++|+++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECT
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECC
Confidence 555666788887763 11 24789999999999998888999999999999999999976655 479999999999999
Q ss_pred CcccccccChhccCCCCCCEEeCCCCcCcc-cCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCcee
Q 046050 91 YNNIGGTLPWCLVNMTSLRILDIASNQITG-NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLF 169 (779)
Q Consensus 91 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~ 169 (779)
+|.+++..+..|+++++|++|++++|++++ .+|. .++.+++|++|++++|.+.+.++..
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~------------------- 142 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRI------------------- 142 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTT-------------------
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHh-------------------
Confidence 999998888889999999999999999984 2344 7899999999999999854444433
Q ss_pred eecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccC--C
Q 046050 170 VEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFF--Q 247 (779)
Q Consensus 170 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~--~ 247 (779)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.++++.+++|++|++++|++.+.. +
T Consensus 143 ------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 143 ------DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp ------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred ------hhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc
Confidence 3444557777777778877778888889999999999999887 778877778899999999999988752 1
Q ss_pred -CCCCCCCCccEEEccCCCCCcCCchhhh---hcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCcccc
Q 046050 248 -MPVNPLKQLTTIDVSKNFIQGHIPTGIG---AFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIF 323 (779)
Q Consensus 248 -~~l~~l~~L~~L~Ls~n~l~~~i~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 323 (779)
.....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+...-.. ...
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------------~~~ 274 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------------SES 274 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------------CTT
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------------cch
Confidence 2234577888899988888755444432 235678888888877654211000 000
Q ss_pred ccccCCCCCCEEEccCCcCccc-----cCccccCCCCCCEEEccCCccCCCcchhh-hCCCCCceEEccCCCCCCCcch-
Q 046050 324 SRSFNLTNLVTLQLDANQFTGG-----IPENLLNCSLLGGLYLSDNHISGKIPKWL-GNLSNLVDIIMPNNHLEGPIPA- 396 (779)
Q Consensus 324 ~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~- 396 (779)
..+..+++|+.|++.++.+... .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+..|.
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc
Confidence 1122344555555555543311 1111223356677777777766 444444 4567777777777777655432
Q ss_pred --hhcCCCCCCEEEccCccCcccCC--cCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCC
Q 046050 397 --NLCKLNFLTVLDLEVNNISGSLP--SCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLS 471 (779)
Q Consensus 397 --~~~~l~~L~~L~L~~n~l~~~~~--~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 471 (779)
.+..+++|+.|++++|++++..+ ..+. +++ |++|++++|+++ .+|..+..++
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~----------------------L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN----------------------LTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT----------------------CCEEECTTCCCC-CCCSCCCCCT
T ss_pred hhhhhccccCcEEEccCCcccccccchhhhhcCCC----------------------CCEEECCCCCCc-cCChhhcccc
Confidence 25566777777777777664321 1111 333 344444444444 3455566677
Q ss_pred CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 046050 472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSG 551 (779)
Q Consensus 472 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (779)
+|++|++++|++++ +|..+ .++|++|++++|++++.. .
T Consensus 411 ~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~-~-------------------------------------- 448 (549)
T 2z81_A 411 KMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS-L-------------------------------------- 448 (549)
T ss_dssp TCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC-C--------------------------------------
T ss_pred cccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc-c--------------------------------------
Confidence 77777777777763 33322 257888888888887421 1
Q ss_pred CCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEE
Q 046050 552 SSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL 631 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 631 (779)
.++.|++||+++|+++ .+|. ...+++|+.|+|++|++++.+|..|..+++|+.|
T Consensus 449 ------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 449 ------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp ------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred ------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 0456888888888888 6665 4678999999999999999899999999999999
Q ss_pred ECCCCcCcCCCc
Q 046050 632 DLSYNMLQGKIP 643 (779)
Q Consensus 632 ~Ls~N~l~~~~p 643 (779)
++++|++++..|
T Consensus 503 ~l~~N~~~~~~~ 514 (549)
T 2z81_A 503 WLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCccCCCc
Confidence 999999998877
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-47 Score=438.25 Aligned_cols=374 Identities=20% Similarity=0.217 Sum_probs=236.0
Q ss_pred CCcCCCCcchhhhCCCCCCEEEccCCCCCCc-----------------Cchhhhh--cCCCCCEEECcCCcccccCCCCC
Q 046050 190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGE-----------------FPNWLLE--NNKELETLLLANNSLSGFFQMPV 250 (779)
Q Consensus 190 ~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-----------------~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l 250 (779)
.|++++ +|..++++++|++|++++|.+++. +|..+ + ++++|++|++++|++.+..|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHH
Confidence 456666 777777777788888877777753 44443 3 45555555555555555555555
Q ss_pred CCCCCccEEEccCCC-CCc-CCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccc--cc
Q 046050 251 NPLKQLTTIDVSKNF-IQG-HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS--RS 326 (779)
Q Consensus 251 ~~l~~L~~L~Ls~n~-l~~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~ 326 (779)
..+++|++|++++|+ +++ .+|..++. + .....+++|++|++++|.++ .+|. .+
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L---------------------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQA-L---------------------ADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHH-H---------------------HHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHh-h---------------------hccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 555555555555554 544 44444443 1 00112235666666666666 5555 66
Q ss_pred cCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCC-CceEEccCCCCCCCcchhhcCCC--C
Q 046050 327 FNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSN-LVDIIMPNNHLEGPIPANLCKLN--F 403 (779)
Q Consensus 327 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~ 403 (779)
+.+++|++|++++|++++.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 677777777777777776666 6677777777777777777 66666777777 777777777776 5566555543 6
Q ss_pred CCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcC
Q 046050 404 LTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483 (779)
Q Consensus 404 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 483 (779)
|+.|++++|.+++..|..+.......+. ...|+.|++++|++++..+..+..+++|++|+|++|++
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~--------------~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFK--------------GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCC--------------CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred cCEEECcCCcCCCcchhhhccccccccc--------------CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 7777777777766655544310000000 00155556666666543344455577777777777777
Q ss_pred cccCcccccCCC-------CCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCc
Q 046050 484 EGEVPVQLCLLK-------QLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR 556 (779)
Q Consensus 484 ~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (779)
+...+..+.... +|+.|++++|+++ .+|..++.
T Consensus 470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------------- 509 (636)
T 4eco_A 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------------------------- 509 (636)
T ss_dssp SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST---------------------------------------
T ss_pred CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh---------------------------------------
Confidence 733333333322 7778888888777 56665510
Q ss_pred ccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEc------CCCcCCccCchhhhCCCCCCE
Q 046050 557 KEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNL------SHNNLMGTIPSTFSHLSQIES 630 (779)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~ 630 (779)
..+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+.++++|+.
T Consensus 510 ------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 510 ------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp ------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred ------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 014567778888888875 7777777888888888 557778888888888888888
Q ss_pred EECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCC
Q 046050 631 LDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 631 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 667 (779)
|+|++|++ +.+|..+. ++|++|++++|++.+.-+
T Consensus 571 L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 571 LQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp EECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred EECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 88888888 47777655 788888888888775443
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-44 Score=415.34 Aligned_cols=514 Identities=18% Similarity=0.167 Sum_probs=281.9
Q ss_pred CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050 58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR 137 (779)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~ 137 (779)
++++|+|++|++++..+ .+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+++ .+|.+.|+++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 45555555555543322 34555555555555555555555555555555555555555555 45544555555555555
Q ss_pred cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC-CcchhhhCCCCCCEEEccCCC
Q 046050 138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMN 216 (779)
Q Consensus 138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~L~~L~Ls~n~ 216 (779)
+++|++++ ++...+..+.+|++|++++|.+.. ..|..+..+++|++|++++|+
T Consensus 131 Ls~N~l~~--------------------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 131 AVETNLAS--------------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTSCCCC--------------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCC--------------------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 55555542 233334445566666666666654 357788888999999999999
Q ss_pred CCCcCchhhhhcCC----CCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCC
Q 046050 217 LRGEFPNWLLENNK----ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292 (779)
Q Consensus 217 l~~~~~~~~~~~~~----~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~ 292 (779)
+++..+..+ +.+. ....++++.|.+..+.+..+ ....++.+++++|.....++...+..++.++...+..+...
T Consensus 185 l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 185 IQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp CCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence 885545443 3333 34578889998887665544 34567788888887664555555555677776665443322
Q ss_pred ccc--Cc-ccccccCCccccEEEccCCcCC---ccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCcc
Q 046050 293 GSI--PC-SLHMTMGCFSLQILALSNNSLQ---GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHI 366 (779)
Q Consensus 293 ~~~--~~-~~~~~~~~~~L~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 366 (779)
... .. ..........+...++..+... ......+....+++.+++.++.+.... .+.....++.|++.+|.+
T Consensus 263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEE
T ss_pred cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccc
Confidence 111 00 0011222234444444443222 122333445667777777777665322 344556777777777777
Q ss_pred CCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccC--Cc-CcCCCcccEEEccCCcCcccchh
Q 046050 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL--PS-CFSSWLLTQVHLSRNKIEGQLED 443 (779)
Q Consensus 367 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~-~~~~~~L~~L~l~~n~l~~~~~~ 443 (779)
.+..+. .+..|+.+++..|..... .....+++|+.+++++|.+.... +. .+...+++.+++..+........
T Consensus 341 ~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 341 GQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp SSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred cCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc
Confidence 644332 355677777777766532 22345677777777777665322 11 12245566666666655443322
Q ss_pred hHh-hcceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc-CCchhhhhcc
Q 046050 444 VFG-DILVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT-IPSCLYKTAL 520 (779)
Q Consensus 444 ~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~l 520 (779)
... ..++.++++++......+ ..+..+++++.+++++|.+.+..+..+..++.|+.|++++|++.+. .|..+
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~----- 490 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF----- 490 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-----
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh-----
Confidence 111 115555555554443322 3344555555555555555555555555555555555555553322 22211
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccC
Q 046050 521 GEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGY 600 (779)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 600 (779)
..+++|+.|||++|++++..|..|++
T Consensus 491 ------------------------------------------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 491 ------------------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp ------------------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ------------------------------------------------------hhccccCEEECCCCccCCcChHHHcC
Confidence 01344555555555555555555555
Q ss_pred cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhc-ccCcEEEccCCcCcccCC
Q 046050 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL-YALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p 667 (779)
+++|++|+|++|+|++..|..|.++++|+.|||++|++++..|..+..+ ++|++|++++|+++|.|.
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 5555555555555555555555555555555555555555555555554 355555555555555553
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.2e-44 Score=411.99 Aligned_cols=529 Identities=19% Similarity=0.155 Sum_probs=363.7
Q ss_pred EEeCCCCccc-c-CCC-CCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccc
Q 046050 19 TLELRDYHLE-L-LNF-TNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIG 95 (779)
Q Consensus 19 ~L~Ls~~~~~-~-~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~ 95 (779)
+.|-++-.++ + .++ +++++|+|++|+++...+.+|.++++|++|+|++|.+.+..+ .+|.++++|++|+|++|+++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCC
Confidence 4455554442 2 234 379999999999998888899999999999999999975544 57899999999999999999
Q ss_pred cccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccC
Q 046050 96 GTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESH 175 (779)
Q Consensus 96 ~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 175 (779)
+..+..|.++++|++|+|++|+++ .++...|+++++|++|++++|.+++......+..+++|++|++++|.+....+ .
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~ 191 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-T 191 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-G
T ss_pred CCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-c
Confidence 877788999999999999999999 77776799999999999999998753334566778888888888777654322 2
Q ss_pred CCCCCc----cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCccc------cc
Q 046050 176 SLTPKF----QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS------GF 245 (779)
Q Consensus 176 ~~~~~~----~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~------~~ 245 (779)
.+..+. ....++++.|.+....+..+ ....++.+++++|.....++...+..+..++...+..+... ..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 222211 23456666666654333333 33345666776665554444444555666655554332211 11
Q ss_pred CCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCcccccc
Q 046050 246 FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR 325 (779)
Q Consensus 246 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 325 (779)
....+..+..+...++ ..+.................+++.+.+.++.+... ..
T Consensus 271 ~~~~~~~~~~l~~~~l-------------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~ 323 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEF-------------------------RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KD 323 (635)
T ss_dssp CTTTTGGGGGSEEEEE-------------------------EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GG
T ss_pred cccccccccchhhhhh-------------------------hhhhhcccccchhhhhhhhcccccccccccccccc--cc
Confidence 1112222223333333 22222111111111122223555666666555432 22
Q ss_pred ccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCC--CcchhhcCCCC
Q 046050 326 SFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG--PIPANLCKLNF 403 (779)
Q Consensus 326 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 403 (779)
+.....++.|++.+|.+....+ ..++.|+.+++..|.+... .....+++|+.+++++|.+.. ..+..+..+.+
T Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 398 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398 (635)
T ss_dssp GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC
T ss_pred cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhh
Confidence 3345566777777766653322 2345566777777666532 223456777777777776642 23455566777
Q ss_pred CCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchh-hHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccC
Q 046050 404 LTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLED-VFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480 (779)
Q Consensus 404 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 480 (779)
|+.++++.+.+....+....++.|+.+++..+......+. .+... ++.+++++|.+.+..+..+..++++++|++++
T Consensus 399 L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478 (635)
T ss_dssp CCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 7777777777665555544567777777777665544432 23333 88889999999888888899999999999999
Q ss_pred CcC-cccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccc
Q 046050 481 NNL-EGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEE 559 (779)
Q Consensus 481 n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (779)
|++ .+..|..|..+++|++|+|++|++++..|..+ +
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f-------~------------------------------------ 515 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-------N------------------------------------ 515 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-------T------------------------------------
T ss_pred cccccccCchhhhhccccCEEECCCCccCCcChHHH-------c------------------------------------
Confidence 985 44678899999999999999999997666655 1
Q ss_pred eEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC-CCCCEEECCCCcC
Q 046050 560 SVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL-SQIESLDLSYNML 638 (779)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l 638 (779)
.+++|++|+|++|+|++..|..|+.+++|++|||++|++++..|+.|..+ ++|+.|+|++|++
T Consensus 516 ----------------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 516 ----------------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ----------------TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ----------------CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 15789999999999998889999999999999999999999999999998 6899999999999
Q ss_pred cCCC
Q 046050 639 QGKI 642 (779)
Q Consensus 639 ~~~~ 642 (779)
++.-
T Consensus 580 ~C~C 583 (635)
T 4g8a_A 580 ACTC 583 (635)
T ss_dssp CCSG
T ss_pred cccC
Confidence 8643
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-44 Score=419.38 Aligned_cols=401 Identities=18% Similarity=0.186 Sum_probs=265.7
Q ss_pred CcCCCCcchhhhCCCCCCEEEccCCCCCC-cCchhhhhcCCCCCEEECcCCcccccCCCCCC--CCCCccEEEccCCCCC
Q 046050 191 CRCDFTFPRFLYYQHELRYVDLSHMNLRG-EFPNWLLENNKELETLLLANNSLSGFFQMPVN--PLKQLTTIDVSKNFIQ 267 (779)
Q Consensus 191 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~ 267 (779)
|.+++ +|..+.++++|++|+|++|.+++ .++... . ..+.|...+.+|..++ .+++|++|++++|.+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---E------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---S------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---c------ccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 55555 66666666666666666666664 122111 0 0111333345777766 8888888888888887
Q ss_pred cCCchhhhhcCCCCCEEEccCCc-CCc-ccCcccc----cccCCccccEEEccCCcCCccccc--cccCCCCCCEEEccC
Q 046050 268 GHIPTGIGAFLPRLEHFNISRNV-LNG-SIPCSLH----MTMGCFSLQILALSNNSLQGHIFS--RSFNLTNLVTLQLDA 339 (779)
Q Consensus 268 ~~i~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~----~~~~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~ 339 (779)
+.+|..+.. +++|+.|++++|+ +++ .+|..+. ....+++|+.|++++|.++ .+|. .+..+++|+.|++++
T Consensus 505 ~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 505 TQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVH 582 (876)
T ss_dssp CSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTT
T ss_pred ccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCC
Confidence 788877766 7888888888887 777 6776552 2234457788888888777 6666 777788888888888
Q ss_pred CcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCC-CceEEccCCCCCCCcchhhcCCCC--CCEEEccCccCcc
Q 046050 340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSN-LVDIIMPNNHLEGPIPANLCKLNF--LTVLDLEVNNISG 416 (779)
Q Consensus 340 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~ 416 (779)
|+++ .+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++.+
T Consensus 583 N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 583 NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 8877 666 7777788888888888887 67777777777 888888888777 66666665543 7777887777776
Q ss_pred cCCcCc------CCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccc
Q 046050 417 SLPSCF------SSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ 490 (779)
Q Consensus 417 ~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 490 (779)
.+|... ..++ |+.|++++|+++...+..+..+++|+.|+|++|+++...+..
T Consensus 659 ~ip~l~~~l~~~~~~~----------------------L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 659 EGRNISCSMDDYKGIN----------------------ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp TSSSCSSCTTTCCCCC----------------------EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred ccccchhhhccccCCC----------------------cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 655432 1223 555556666655332233346667777777777776322222
Q ss_pred ccC-------CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEE
Q 046050 491 LCL-------LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEF 563 (779)
Q Consensus 491 ~~~-------l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (779)
+.. +++|+.|+|++|+++ .+|..++.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~---------------------------------------------- 749 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA---------------------------------------------- 749 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST----------------------------------------------
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhh----------------------------------------------
Confidence 222 226777777777776 56655410
Q ss_pred EEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCC------CcCCccCchhhhCCCCCCEEECCCCc
Q 046050 564 RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSH------NNLMGTIPSTFSHLSQIESLDLSYNM 637 (779)
Q Consensus 564 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~ 637 (779)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|.++++|+.|+|++|+
T Consensus 750 -----------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 750 -----------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp -----------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred -----------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 014567777777777775 677777777777777765 77778888888888888888888888
Q ss_pred CcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCC--CCC
Q 046050 638 LQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC--GQP 691 (779)
Q Consensus 638 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc--~~~ 691 (779)
+ +.+|..+. ++|+.||+++|++...-+..+..........+.+|+..+ +|+
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred C-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 8 57777655 588888888888875554433222233344555665554 553
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=406.66 Aligned_cols=459 Identities=17% Similarity=0.123 Sum_probs=329.5
Q ss_pred cEEeCCCCcccc-C--CCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCccc
Q 046050 18 ETLELRDYHLEL-L--NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNI 94 (779)
Q Consensus 18 ~~L~Ls~~~~~~-~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i 94 (779)
++||+++|.++- . -.++|++|++++|.+++..+.+|..+++|++|++++|++.+..| ..++.+++|++|++++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCce
Confidence 355666665521 0 11456666666666655555556666666666666666544433 3555666666666666666
Q ss_pred ccccChhccCCCCCCEEeCCCCcCcc-cCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecc
Q 046050 95 GGTLPWCLVNMTSLRILDIASNQITG-NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIE 173 (779)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~Ls~n~i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 173 (779)
++ +|.. .+++|++|++++|++++ .+|. .|+.+++|++|++++|++++ ..+
T Consensus 82 ~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~--------------------- 132 (520)
T 2z7x_B 82 VK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSV--------------------- 132 (520)
T ss_dssp CE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGG---------------------
T ss_pred ee-cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhc---------------------
Confidence 53 3333 55666666666666653 2333 55566666666666665542 122
Q ss_pred cCCCCCCccc--cEEECCCCcC--CCCcchhhhCCC-CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCc-------
Q 046050 174 SHSLTPKFQL--QNISLSGCRC--DFTFPRFLYYQH-ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS------- 241 (779)
Q Consensus 174 ~~~~~~~~~L--~~L~L~~n~~--~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~------- 241 (779)
..+.+| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.
T Consensus 133 ----~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 133 ----LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp ----GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred ----cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 223344 7777777777 666777766654 344677888888877777667788888899888886
Q ss_pred ccccCCCCCCCCCCccEEEccCCCCCcCCchhhhh--cCCCCCEEEccCCcCCcccCccccc--ccCCccccEEEccCCc
Q 046050 242 LSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGA--FLPRLEHFNISRNVLNGSIPCSLHM--TMGCFSLQILALSNNS 317 (779)
Q Consensus 242 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~~L~~L~ls~n~ 317 (779)
+.+..+ .+..+++|+.|++++|.+++..+..+.. ..++|++|++++|.+++.+|..+.. ...+++|+.+++++|.
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 555544 6788889999999988877543333221 1468999999999998888876621 1456689999999998
Q ss_pred CCcccc-ccccCC---CCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCC-
Q 046050 318 LQGHIF-SRSFNL---TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG- 392 (779)
Q Consensus 318 l~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~- 392 (779)
+ .+| ..+..+ ++|+.|++++|.+.... .+..+++|++|++++|++++..|..++.+++|++|++++|++++
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred e--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 8 344 344433 67999999999987432 13688999999999999998889999999999999999999986
Q ss_pred -CcchhhcCCCCCCEEEccCccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhc
Q 046050 393 -PIPANLCKLNFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDK 469 (779)
Q Consensus 393 -~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 469 (779)
..|..+..+++|++|++++|.+++.+| ..+. +++|++|++++|++++..+..+...|+.|++++|+++ .+|..+..
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhc
Confidence 456789999999999999999998444 3344 7899999999999988777666556999999999999 67877889
Q ss_pred CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhh
Q 046050 470 LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLY 516 (779)
Q Consensus 470 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 516 (779)
+++|++|++++|++++..+..+..+++|++|++++|++++..+...+
T Consensus 443 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 99999999999999965445599999999999999999987664443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=404.72 Aligned_cols=445 Identities=20% Similarity=0.187 Sum_probs=248.4
Q ss_pred CCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEE
Q 046050 82 VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKF 161 (779)
Q Consensus 82 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 161 (779)
++|++|++++|.+++..|..|.++++|++|+|++|+++ .+++..|+.+++|++|++++|+++ .++.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~------------ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISC------------ 86 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEEC------------
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCc------------
Confidence 44455555555544444444445555555555555554 222224444555555555555443 1111
Q ss_pred ECcCCceeeecccCCCCCCccccEEECCCCcCCC-CcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCC--CEEECc
Q 046050 162 YGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKEL--ETLLLA 238 (779)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L--~~L~L~ 238 (779)
. .+.+|++|++++|.+.+ .+|..++.+++|++|++++|.+++. .+..+++| ++|+++
T Consensus 87 -------------~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 87 -------------H---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLV 146 (520)
T ss_dssp -------------C---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEE
T ss_pred -------------c---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEee
Confidence 0 12234444444444443 3566777777777777777777631 13455666 777777
Q ss_pred CCcc--cccCCCCCCCCC-CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccC
Q 046050 239 NNSL--SGFFQMPVNPLK-QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSN 315 (779)
Q Consensus 239 ~n~~--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~ 315 (779)
+|.+ .+..+..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.-.....
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------- 207 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------- 207 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-------------------
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-------------------
Confidence 7776 555555554443 233456666666555554444445555555555554100000
Q ss_pred CcCCccccccccCCCCCCEEEccCCcCccccCccc---cCCCCCCEEEccCCccCCCcchhh-----hCCCCCceEEccC
Q 046050 316 NSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL---LNCSLLGGLYLSDNHISGKIPKWL-----GNLSNLVDIIMPN 387 (779)
Q Consensus 316 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~ 387 (779)
.+.+.++ .+..+++|+.|++++|.+.+..+..+ ...++|++|++++|++++.+|..+ ..+++|+.+++++
T Consensus 208 -~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 208 -YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp -HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred -eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 0222222 33444455555555444432211111 012355555555555555555544 5555666666666
Q ss_pred CCCCCCcc-hhhcCC---CCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcC
Q 046050 388 NHLEGPIP-ANLCKL---NFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI 463 (779)
Q Consensus 388 n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 463 (779)
|.+ .+| ..+..+ .+|+.|++++|.+..... ...+++|++|++++ |++++..
T Consensus 286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~----------------------n~l~~~~ 340 (520)
T 2z7x_B 286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN----------------------NLLTDTV 340 (520)
T ss_dssp CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS----------------------SCCCTTT
T ss_pred cce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeEC----------------------CccChhh
Confidence 655 222 333322 456666666666543221 01233343333333 3333344
Q ss_pred chhhhcCCCCcEEEccCCcCcc--cCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCc
Q 046050 464 PNWIDKLSHLSYLILANNNLEG--EVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSP 541 (779)
Q Consensus 464 ~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (779)
|..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++.+|...+
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------------------- 395 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------------------- 395 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-------------------------
T ss_pred hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh-------------------------
Confidence 5556666777777777777765 3455667777777777777777654554321
Q ss_pred ccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchh
Q 046050 542 AAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPST 621 (779)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 621 (779)
..++.|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..
T Consensus 396 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~ 439 (520)
T 2z7x_B 396 ---------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ 439 (520)
T ss_dssp ---------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGG
T ss_pred ---------------------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchh
Confidence 0135677777777777766666554 78999999999998 78887
Q ss_pred hhCCCCCCEEECCCCcCcCCCch-hhhhcccCcEEEccCCcCcccCCC
Q 046050 622 FSHLSQIESLDLSYNMLQGKIPT-QLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 622 ~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
+..+++|+.|++++|++++ +|. .+..+++|++|++++|+++|.|+.
T Consensus 440 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 440 VVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 7899999999999999994 555 488899999999999999988874
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-45 Score=422.24 Aligned_cols=441 Identities=17% Similarity=0.208 Sum_probs=340.1
Q ss_pred cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCC------CC------cCchhhhhcCCCCCEEECcCCcccccCCCC
Q 046050 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNL------RG------EFPNWLLENNKELETLLLANNSLSGFFQMP 249 (779)
Q Consensus 182 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l------~~------~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 249 (779)
+++.|+|+++.+.|.+|..++++++|++|++++|.+ .+ .+|... +..++ +++++|.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 788888888888888888888888888888888865 22 333322 12233 444444433332222
Q ss_pred CC-------------------CCCCccEEEcc--CCCCCcCCchhhhhcCCCCCEEEccCCcCCcc--------------
Q 046050 250 VN-------------------PLKQLTTIDVS--KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGS-------------- 294 (779)
Q Consensus 250 l~-------------------~l~~L~~L~Ls--~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~-------------- 294 (779)
+. ....++.+.+. .|.+++ +|..+.. +++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence 22 11122222222 467775 7877766 78888888888888874
Q ss_pred ---cCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCc-Ccc-ccCccccCC------CCCCEEEccC
Q 046050 295 ---IPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQ-FTG-GIPENLLNC------SLLGGLYLSD 363 (779)
Q Consensus 295 ---~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~L~~ 363 (779)
+|..+. +.++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++
T Consensus 236 ~~~ip~~l~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLK-WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCC-GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhh-hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 665543 0144588888888888888888888888888888888887 877 677777665 8888899988
Q ss_pred CccCCCcch--hhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCc-ccEEEccCCcCcc
Q 046050 364 NHISGKIPK--WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWL-LTQVHLSRNKIEG 439 (779)
Q Consensus 364 n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~ 439 (779)
|+++ .+|. .++++++|++|++++|.++|.+| .+..+++|+.|++++|+++ .+|..+. +++ |++|++++|.++.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc
Confidence 8888 6777 88888889999998888887778 7888888889999888888 4444444 777 8899999888885
Q ss_pred cchhhHhh----cceEEEccCccccCcCchhhh-------cCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050 440 QLEDVFGD----ILVTLDLSYNRFSGRIPNWID-------KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 440 ~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
++. .+.. .|+.|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 392 lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 392 IPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 443 3322 389999999999988888887 7889999999999999666666778999999999999998
Q ss_pred ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050 509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN 588 (779)
Q Consensus 509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 588 (779)
.+|...+.... .....++.|+.|+|++|
T Consensus 471 -~i~~~~~~~~~---------------------------------------------------~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 471 -EIPKNSLKDEN---------------------------------------------------ENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp -BCCSSSSEETT---------------------------------------------------EECTTGGGCCEEECCSS
T ss_pred -CcCHHHhcccc---------------------------------------------------ccccccCCccEEECcCC
Confidence 77765522100 00011358999999999
Q ss_pred ccCCCCCcccc--CcccCcEEEcCCCcCCccCchhhhCCCCCCEEEC------CCCcCcCCCchhhhhcccCcEEEccCC
Q 046050 589 KLTGEIPFQIG--YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDL------SYNMLQGKIPTQLVELYALAIFSVAHN 660 (779)
Q Consensus 589 ~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N 660 (779)
+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+..+++|++|++++|
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 999 7888887 99999999999999997 8999999999999999 568889999999999999999999999
Q ss_pred cCcccCCCCCCcCCCCCCCcccCCCCCCCC
Q 046050 661 NLSGKVPDRVGQFATFTENSYDGNSLLCGQ 690 (779)
Q Consensus 661 ~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~ 690 (779)
++ +.+|..+. ..++.+.+++|+..|-.
T Consensus 577 ~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 577 DI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 99 68898644 78999999999998854
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-44 Score=416.75 Aligned_cols=361 Identities=19% Similarity=0.210 Sum_probs=278.2
Q ss_pred CCCCcCCchhhhhcCCCCCEEEccCCcCCc-----------------ccCcccccccCCccccEEEccCCcCCccccccc
Q 046050 264 NFIQGHIPTGIGAFLPRLEHFNISRNVLNG-----------------SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRS 326 (779)
Q Consensus 264 n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 326 (779)
|.+++ +|..+.. +++|+.|++++|.+++ .+|..+. +.++++|+.|++++|.+.+.+|..+
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~-f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC-GGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhh-hccCCCCCEEECcCCCCCccChHHH
Confidence 66664 7776665 6777777777777776 2555442 1144578888888888777888888
Q ss_pred cCCCCCCEEEccCCc-Ccc-ccCccccCC-------CCCCEEEccCCccCCCcch--hhhCCCCCceEEccCCCCCCCcc
Q 046050 327 FNLTNLVTLQLDANQ-FTG-GIPENLLNC-------SLLGGLYLSDNHISGKIPK--WLGNLSNLVDIIMPNNHLEGPIP 395 (779)
Q Consensus 327 ~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~ 395 (779)
.++++|+.|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+.++++|+.|++++|.++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 888888888888887 776 566544443 48888888888888 6776 7888888888888888887 666
Q ss_pred hhhcCCCCCCEEEccCccCcccCCcCcC-CCc-ccEEEccCCcCcccchhhHhhc----ceEEEccCccccCcCchhh--
Q 046050 396 ANLCKLNFLTVLDLEVNNISGSLPSCFS-SWL-LTQVHLSRNKIEGQLEDVFGDI----LVTLDLSYNRFSGRIPNWI-- 467 (779)
Q Consensus 396 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~~~~~~~~~~----L~~L~L~~n~l~~~~~~~~-- 467 (779)
.|..+++|+.|++++|+++ .+|..+. +++ |+.|++++|.++.++ ..+... |+.|++++|++.+.+|...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 7788888888888888887 4454444 666 888888888887443 333322 8888888888887665322
Q ss_pred -h--cCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccc
Q 046050 468 -D--KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAG 544 (779)
Q Consensus 468 -~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (779)
. .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|...+.... .
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----~------------------ 722 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-----G------------------ 722 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-----S------------------
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-----c------------------
Confidence 2 3458999999999999555555568999999999999998 77776522100 0
Q ss_pred cccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCcccc--CcccCcEEEcCCCcCCccCchhh
Q 046050 545 EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIG--YLNMIRALNLSHNNLMGTIPSTF 622 (779)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~ 622 (779)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+
T Consensus 723 ----------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 723 ----------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp ----------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred ----------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence 0011458999999999999 8888887 99999999999999997 79899
Q ss_pred hCCCCCCEEECCC------CcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCC
Q 046050 623 SHLSQIESLDLSY------NMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCG 689 (779)
Q Consensus 623 ~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~ 689 (779)
.++++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+. ..++.+.+++|+...-
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 9999999999977 889999999999999999999999999 78998644 6889999999997653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-41 Score=385.65 Aligned_cols=462 Identities=20% Similarity=0.172 Sum_probs=271.0
Q ss_pred CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050 58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR 137 (779)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~ 137 (779)
..+++++++|.+++ +|. .+. ++|++|++++|.+++..+..|.++++|++|+|++|+++ .++++.|+.+++|++|+
T Consensus 32 ~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp -CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEE
Confidence 34666666666653 342 232 56666677666666655566666666777777766666 34333566666666666
Q ss_pred cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC-CcchhhhCCCCCCEEEccCCC
Q 046050 138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMN 216 (779)
Q Consensus 138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~L~~L~Ls~n~ 216 (779)
+++|+++ .++.. .+.+|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 107 Ls~N~l~-~lp~~----------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 107 VSHNRLQ-NISCC----------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CTTSCCC-EECSC----------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCcCC-ccCcc----------------------------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 6666665 22211 12244444444454443 234566666667777777666
Q ss_pred CCCcCchhhhhcCCCC--CEEECcCCcc--cccCCCCCCCCC-CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcC
Q 046050 217 LRGEFPNWLLENNKEL--ETLLLANNSL--SGFFQMPVNPLK-QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVL 291 (779)
Q Consensus 217 l~~~~~~~~~~~~~~L--~~L~L~~n~~--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l 291 (779)
+++.. +..+++| ++|++++|.+ ++..+..+..+. +.-.+++++|.+.+.++...+..+++|+.+++++|..
T Consensus 158 l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 158 FRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp CCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred cccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 65311 2333444 6666666665 444444443332 1113355555554444433333334444444444421
Q ss_pred CcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccc----cCccccCCCCCCEEEccCCccC
Q 046050 292 NGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGG----IPENLLNCSLLGGLYLSDNHIS 367 (779)
Q Consensus 292 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~ 367 (779)
.-. .+. .....+..+++|+.++++++.+.+. .+..+ ..++|++|++++|.++
T Consensus 234 ~~~----------------------~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 234 NCQ----------------------RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTIT 289 (562)
T ss_dssp THH----------------------HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEEC
T ss_pred ccc----------------------hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEee
Confidence 000 011 1112344555555555555544321 11111 2236666666666666
Q ss_pred CCcchhh-----hCCCCCceEEccCCCCCCCcc-hhhc---CCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCc
Q 046050 368 GKIPKWL-----GNLSNLVDIIMPNNHLEGPIP-ANLC---KLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE 438 (779)
Q Consensus 368 ~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 438 (779)
+.+|..+ ..++.|+.++++.+.+ .+| ..+. ...+|+.|++++|.+..... ...+++|++|+++
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~----- 361 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFT----- 361 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECC-----
T ss_pred ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECC-----
Confidence 6666555 5555555666666655 223 2222 22567777777777653221 0123444444444
Q ss_pred ccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccC--cccccCCCCCCEEEccCCcCcccCCchhh
Q 046050 439 GQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEV--PVQLCLLKQLQLIDLSHNNLSGTIPSCLY 516 (779)
Q Consensus 439 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 516 (779)
+|++++..|..+..+++|++|++++|++++.. |..+..+++|++|++++|++++.+|...+
T Consensus 362 -----------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 362 -----------------QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp -----------------SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred -----------------CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 44444455666677778888888888877633 45677788888888888888765655321
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCc
Q 046050 517 KTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPF 596 (779)
Q Consensus 517 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~ 596 (779)
. .++.|+.|++++|++++.+|.
T Consensus 425 ~----------------------------------------------------------~l~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 425 A----------------------------------------------------------WAESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp C----------------------------------------------------------CCTTCCEEECCSSCCCGGGGS
T ss_pred c----------------------------------------------------------CcccCCEEECCCCCCCcchhh
Confidence 0 145678888888888776666
Q ss_pred cccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchh-hhhcccCcEEEccCCcCcccCCC
Q 046050 597 QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQ-LVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 597 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
.+. ++|+.|+|++|+++ .+|..+.++++|+.|+|++|+++ .+|.. +..+++|++|++++|+++|.||.
T Consensus 447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 554 78999999999998 67777779999999999999999 45554 88999999999999999998875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-41 Score=384.72 Aligned_cols=463 Identities=19% Similarity=0.137 Sum_probs=337.8
Q ss_pred CccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeC
Q 046050 34 NLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDI 113 (779)
Q Consensus 34 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 113 (779)
..+++++++++++. +|..+. ++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|.+|.++++|++|+|
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34677777777764 343332 577777777777754433 46777777777777777777766777777777777777
Q ss_pred CCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccc--cEEECCCC
Q 046050 114 ASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQL--QNISLSGC 191 (779)
Q Consensus 114 s~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L--~~L~L~~n 191 (779)
++|+++ .+|.. .+++|++|++++|++++......+.++++|++|++++|.+.. ..+..+.+| ++|++++|
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEES
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeecc
Confidence 777777 67662 677777777777777632212466777777777777776543 223333444 88888888
Q ss_pred cC--CCCcchhhhCCC-CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCc-----ccccCCCCCCCCCCccEEEccC
Q 046050 192 RC--DFTFPRFLYYQH-ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS-----LSGFFQMPVNPLKQLTTIDVSK 263 (779)
Q Consensus 192 ~~--~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-----~~~~~~~~l~~l~~L~~L~Ls~ 263 (779)
.+ .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+ +.+. ...+..+++|+.+++++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecC
Confidence 88 777777776654 122567888888877777666778889999998885 2221 12456678888888888
Q ss_pred CCCCcC----CchhhhhcCCCCCEEEccCCcCCcccCcccc--cccCCccccEEEccCCcCCcccc-cccc---CCCCCC
Q 046050 264 NFIQGH----IPTGIGAFLPRLEHFNISRNVLNGSIPCSLH--MTMGCFSLQILALSNNSLQGHIF-SRSF---NLTNLV 333 (779)
Q Consensus 264 n~l~~~----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~-~~~~---~l~~L~ 333 (779)
+.+.+. ++.... .++|++|++++|.+++.+|..+. ....+..|+.++++.+.+ .+| ..+. ...+|+
T Consensus 259 ~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 259 IETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred CcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 776632 222222 35899999999999888887651 123444666666666666 223 2222 236799
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC--cchhhcCCCCCCEEEccC
Q 046050 334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP--IPANLCKLNFLTVLDLEV 411 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~ 411 (779)
+|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++. .|..+..+++|+.|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 9999999886322 126789999999999999988899999999999999999999863 456789999999999999
Q ss_pred ccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc
Q 046050 412 NNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV 489 (779)
Q Consensus 412 n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 489 (779)
|++++.+| ..+. +++|++|++++|++++..+..+...|+.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 99998444 4454 7899999999999988776665556999999999999 5677677999999999999999965555
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhh
Q 046050 490 QLCLLKQLQLIDLSHNNLSGTIPSCLY 516 (779)
Q Consensus 490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 516 (779)
.+..+++|+.|++++|++.+..|...+
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 599999999999999999987765443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-39 Score=359.84 Aligned_cols=381 Identities=19% Similarity=0.154 Sum_probs=237.8
Q ss_pred EEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccC
Q 046050 209 YVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR 288 (779)
Q Consensus 209 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~ 288 (779)
.++.+++.++ .+|. + .++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555555 5554 2 245666666666666665666666666666666666665455444444455566666655
Q ss_pred CcCCcccCcccccccCCccccEEEccCCcCCcccccc--ccCCCCCCEEEccCCcCccccCcc-ccCCCCCCEEEccCCc
Q 046050 289 NVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR--SFNLTNLVTLQLDANQFTGGIPEN-LLNCSLLGGLYLSDNH 365 (779)
Q Consensus 289 n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~ 365 (779)
|.+++..|..+. ++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +.++++|++|++++|+
T Consensus 89 n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 89 NQFLQLETGAFN---GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCEECTTTTT---TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CccCccChhhcc---CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 555544443331 2224555555555554433222 445555555555555555444443 4555555555555555
Q ss_pred cCCCcchhhhCC--CCCceEEccCCCCCCCcchh--------hcCCCCCCEEEccCccCcccCCcCcC----CCcccEEE
Q 046050 366 ISGKIPKWLGNL--SNLVDIIMPNNHLEGPIPAN--------LCKLNFLTVLDLEVNNISGSLPSCFS----SWLLTQVH 431 (779)
Q Consensus 366 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~L~~L~ 431 (779)
+++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|++++..+..+. ..+++.|+
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 555544444443 44555555555554332221 11233444444444444433332221 13344444
Q ss_pred ccCCcCcccchhhHhhcceEEEccCccccCcCchhhhc--CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcc
Q 046050 432 LSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDK--LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSG 509 (779)
Q Consensus 432 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 509 (779)
+++|...+.. +..+.+.+..+..+.. .++|++|++++|++.+..|..+..+++|++|++++|++++
T Consensus 246 l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 246 LSNSYNMGSS------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp CTTCTTTSCC------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred eccccccccc------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 4444332211 1111222222222322 3689999999999998888889999999999999999986
Q ss_pred cCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCc
Q 046050 510 TIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNK 589 (779)
Q Consensus 510 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 589 (779)
..|..+ + .++.|+.|++++|+
T Consensus 314 ~~~~~~-------~----------------------------------------------------~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 314 IDDNAF-------W----------------------------------------------------GLTHLLKLNLSQNF 334 (455)
T ss_dssp ECTTTT-------T----------------------------------------------------TCTTCCEEECCSSC
T ss_pred cChhHh-------c----------------------------------------------------CcccCCEEECCCCc
Confidence 655554 1 14678899999999
Q ss_pred cCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 590 LTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 590 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
+++..|..++.+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.||.
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9888888999999999999999999988899999999999999999999987777889999999999999999999996
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-40 Score=362.21 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=97.4
Q ss_pred CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEE
Q 046050 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285 (779)
Q Consensus 206 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 285 (779)
+|++|++++|.+++ +|.. .++|++|++++|+++++... .++|++|++++|.++ .+| .+.. +++|++|+
T Consensus 92 ~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~-~lp-~~~~-l~~L~~L~ 159 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLE-KLP-ELQN-SSFLKIID 159 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCS-SCC-CCTT-CTTCCEEE
T ss_pred CCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCC-CCc-ccCC-CCCCCEEE
Confidence 44444444444442 3321 24444555554444432110 134555555555554 344 2222 44555555
Q ss_pred ccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCc
Q 046050 286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365 (779)
Q Consensus 286 l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 365 (779)
+++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|++++ +|... ++|++|++++|.
T Consensus 160 l~~N~l~~-lp~~~------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp CCSSCCSC-CCCCC------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSC
T ss_pred CCCCcCcc-cCCCc------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCc
Confidence 55555542 22211 145555555555554 23 35566666666666666653 33221 356666666666
Q ss_pred cCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcc
Q 046050 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG 439 (779)
Q Consensus 366 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 439 (779)
++ .+|. ++.+++|++|++++|++++ +|. .+++|+.|++++|++++. |.. .++|+.|++++|++++
T Consensus 227 l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 227 LE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE
T ss_pred CC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Ccc--cCcCCEEECcCCccCc
Confidence 66 4442 5566666666666666653 232 135566666666666542 221 2344444444444443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-38 Score=352.19 Aligned_cols=350 Identities=22% Similarity=0.225 Sum_probs=226.1
Q ss_pred CCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccc-cccccCCCCCCEEEccCCcCccccCccccCCCCCCE
Q 046050 280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI-FSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGG 358 (779)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 358 (779)
+|++|++++|.+++..|..+ .++++|++|++++|.+.+.+ +..+.++++|++|++++|++++..|..+.++++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TCCEEECCSSCCCEECTTTT---SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred ccCEEEecCCccCcCChhHh---ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 44444444444443333322 12224444444444443222 233444555555555555555444455555555555
Q ss_pred EEccCCccCCCcchh--hhCCCCCceEEccCCCCCCCcchh-hcCCCCCCEEEccCccCcccCCcCcC---CCcccEEEc
Q 046050 359 LYLSDNHISGKIPKW--LGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFS---SWLLTQVHL 432 (779)
Q Consensus 359 L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~L~~L~l 432 (779)
|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|++++..+..+. ...++.+++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 555555554433322 445555555555555555444433 44555555555555555544444333 134555555
Q ss_pred cCCcCcccchhhHh----------hcceEEEccCccccCcCchhhhcC---CCCcEEEccCCcCcc----------cCcc
Q 046050 433 SRNKIEGQLEDVFG----------DILVTLDLSYNRFSGRIPNWIDKL---SHLSYLILANNNLEG----------EVPV 489 (779)
Q Consensus 433 ~~n~l~~~~~~~~~----------~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~----------~~~~ 489 (779)
++|.+.+..+..+. ..|++|++++|++++..|..+... ++|+.|++++|.+.+ ..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 55555544332211 125666666666655555444332 566666666664432 2222
Q ss_pred cccC--CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcC
Q 046050 490 QLCL--LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN 567 (779)
Q Consensus 490 ~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (779)
.+.. .++|+.|++++|++++..|..+ +
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~-------------------------------------------- 296 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVF-------S-------------------------------------------- 296 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTT-------T--------------------------------------------
T ss_pred ccccccccCceEEEecCccccccchhhc-------c--------------------------------------------
Confidence 2222 3689999999999997766655 1
Q ss_pred ceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhh
Q 046050 568 TSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLV 647 (779)
Q Consensus 568 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 647 (779)
.+++|++|++++|++++..|..|+.+++|+.|+|++|.+++..|..|+++++|++|+|++|++++..|..|.
T Consensus 297 --------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 297 --------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp --------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred --------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence 156899999999999988899999999999999999999988899999999999999999999999999999
Q ss_pred hcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 648 ELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 648 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
.+++|++|++++|++++..+..+..+..++.+.+++|++.|.|+
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999998777777889999999999999999997
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-38 Score=347.24 Aligned_cols=412 Identities=21% Similarity=0.251 Sum_probs=173.7
Q ss_pred CCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCC-------------CEEeCCCCcCcccC
Q 046050 56 LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL-------------RILDIASNQITGNI 122 (779)
Q Consensus 56 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~i 122 (779)
.++|++|++++|.+ +.+|. .++++++|++|++++|.+++.+|..++++++| ++|++++|.++ .+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred cccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 46677777777776 56663 56777777777777777776677666666654 66666666666 45
Q ss_pred CchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhh
Q 046050 123 SSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY 202 (779)
Q Consensus 123 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 202 (779)
|. ..++|++|++++|.+++ ++.. . .+|++|++++|.+.+ ++..
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~~----~-------------------------~~L~~L~l~~n~l~~-l~~~-- 129 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPEL----P-------------------------QSLKSLLVDNNNLKA-LSDL-- 129 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCCC----C-------------------------TTCCEEECCSSCCSC-CCSC--
T ss_pred CC----CcCCCCEEEccCCcCCc-cccc----c-------------------------CCCcEEECCCCccCc-ccCC--
Confidence 54 13566666666666553 2210 0 134444444443332 1110
Q ss_pred CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC
Q 046050 203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE 282 (779)
Q Consensus 203 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 282 (779)
.++|++|++++|.++ .+|. ++++++|++|++++|++++ +|.. .++|+
T Consensus 130 -~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-------------------------lp~~----~~~L~ 176 (454)
T 1jl5_A 130 -PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-------------------------LPDL----PPSLE 176 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-------------------------CCCC----CTTCC
T ss_pred -CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-------------------------cCCC----ccccc
Confidence 134555555555554 2442 3444455555555554443 3321 12445
Q ss_pred EEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEcc
Q 046050 283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS 362 (779)
Q Consensus 283 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 362 (779)
+|++++|.+++ +| .+ .++++|++|++++|.+++ +|.. .++|++|++++|+++ .+|. +..+++|++|+++
T Consensus 177 ~L~L~~n~l~~-l~-~~---~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 177 FIAAGNNQLEE-LP-EL---QNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp EEECCSSCCSS-CC-CC---TTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred EEECcCCcCCc-Cc-cc---cCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence 55555554443 22 11 223355555555555543 2221 235666666666666 4443 6666666666666
Q ss_pred CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccch
Q 046050 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLE 442 (779)
Q Consensus 363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 442 (779)
+|++++ +|.. .++|++|++++|++++ +|.. .++|+.|++++|++++... . .++|+.|++++|++++...
T Consensus 246 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~-~--~~~L~~L~l~~N~l~~i~~ 314 (454)
T 1jl5_A 246 NNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE-L--PPNLYYLNASSNEIRSLCD 314 (454)
T ss_dssp SSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-C--CTTCCEEECCSSCCSEECC
T ss_pred CCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-c--CCcCCEEECcCCcCCcccC
Confidence 666664 3332 3567777777777664 3332 3677777777777775321 1 1345555555555543211
Q ss_pred hhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050 443 DVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE 522 (779)
Q Consensus 443 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 522 (779)
+ .++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .
T Consensus 315 --~------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-~------- 355 (454)
T 1jl5_A 315 --L------------------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-L------- 355 (454)
T ss_dssp --C------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-C-------
T ss_pred --C------------------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-h-------
Confidence 0 1355555555555553 3322 355666666666665 3333 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC--CCCccccC
Q 046050 523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG--EIPFQIGY 600 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~ 600 (779)
+++|++|++++|++++ .+|..+..
T Consensus 356 ------------------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 356 ------------------------------------------------------PQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred ------------------------------------------------------hhhccEEECCCCCCCcCCCChHHHHh
Confidence 2445666666666665 44544432
Q ss_pred cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC--CCchhhhhcccCcEEEccCCcCcccCCCCCCc
Q 046050 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG--KIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672 (779)
Q Consensus 601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 672 (779)
|+.|.+.+.+|.. +++|+.||+++|++++ .+|. +++.|.+.+|.+.+.+|.....
T Consensus 382 --------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 382 --------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp --------EECCC-------------------------------------------------------------
T ss_pred --------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 2345566666653 4778888888888886 5554 3566678888888777764333
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=334.68 Aligned_cols=325 Identities=18% Similarity=0.153 Sum_probs=234.4
Q ss_pred ccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387 (779)
Q Consensus 308 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 387 (779)
++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 44444444444444444555556666666666666555555566666666666666666644444556666666666666
Q ss_pred CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCc
Q 046050 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP 464 (779)
Q Consensus 388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~ 464 (779)
|.+.+..+..|..+++|+.|++++|.+++..+..+. +++|++|++++|.+++.++..+... |+.|++++|.+.+..+
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 666655555666666666666666666655555554 5566666666666666666555544 7777888887777777
Q ss_pred hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccc
Q 046050 465 NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAG 544 (779)
Q Consensus 465 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (779)
..+..+++|+.|++++|+..+.+|.......+|+.|++++|+++ .+|...+.
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~--------------------------- 245 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR--------------------------- 245 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHT---------------------------
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhc---------------------------
Confidence 77888999999999998887777776666779999999999998 55543321
Q ss_pred cccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhC
Q 046050 545 EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH 624 (779)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 624 (779)
.++.|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|.+
T Consensus 246 -------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 246 -------------------------------HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp -------------------------------TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred -------------------------------CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 1467899999999999888888999999999999999999999999999
Q ss_pred CCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050 625 LSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 625 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l 692 (779)
+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++.. ..+.......+.++...|..|.
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 999999999999999888888899999999999999999887652 1223334456788888887664
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.9e-35 Score=321.70 Aligned_cols=346 Identities=23% Similarity=0.288 Sum_probs=215.8
Q ss_pred CCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCE
Q 046050 204 QHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH 283 (779)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 283 (779)
+++++.|+++++.+. .+|. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +. .+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCCE
Confidence 345666666666665 4554 3556666666666666665433 666666666666666666 3333 32 2556666
Q ss_pred EEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccC
Q 046050 284 FNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD 363 (779)
Q Consensus 284 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 363 (779)
|++++|.+++..+ ...+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 117 L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~------------------------- 164 (466)
T 1o6v_A 117 LTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG------------------------- 164 (466)
T ss_dssp EECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-------------------------
T ss_pred EECCCCCCCCChH-----HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-------------------------
Confidence 6666665553211 22333555555555554432 124444555555543
Q ss_pred CccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchh
Q 046050 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLED 443 (779)
Q Consensus 364 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 443 (779)
|.+.+.. .+.++++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+++...-
T Consensus 165 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 165 NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGG
T ss_pred CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhh
Confidence 2222211 144444444444444444422 124444455555555554443333 12244455555555555443211
Q ss_pred hHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCC
Q 046050 444 VFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEG 523 (779)
Q Consensus 444 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~ 523 (779)
.....|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~-------- 305 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I-------- 305 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G--------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h--------
Confidence 111226777777777765543 7788899999999999886544 7888999999999998875322 1
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCccc
Q 046050 524 NYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNM 603 (779)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 603 (779)
..+++|+.|++++|++++..| +..+++
T Consensus 306 ---------------------------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 306 ---------------------------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp ---------------------------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred ---------------------------------------------------cCCCCCCEEECcCCcCCCchh--hccCcc
Confidence 115678899999999987655 788999
Q ss_pred CcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCccc
Q 046050 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGK 665 (779)
Q Consensus 604 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 665 (779)
|+.|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999999999865 468899999999999999998777 88999999999999999873
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.9e-35 Score=319.14 Aligned_cols=352 Identities=19% Similarity=0.168 Sum_probs=191.6
Q ss_pred cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEc
Q 046050 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDV 261 (779)
Q Consensus 182 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 261 (779)
+|++|++++|.+.+. | .+..+++|++|++++|.+++ +| ++.+++|++|++++|++++. .++.+++|++|++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L 113 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC 113 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEEC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCCcCCEEEC
Confidence 444555555544432 2 34555555555555555552 33 24455555555555555543 2455555555555
Q ss_pred cCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCc
Q 046050 262 SKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQ 341 (779)
Q Consensus 262 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 341 (779)
++|.++ .+| +. .+++|++|++++|.+++. + ...+++|++|++++|...+.+ .+..+++|+.|++++|+
T Consensus 114 ~~N~l~-~l~--~~-~l~~L~~L~l~~N~l~~l-~-----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 114 DTNKLT-KLD--VS-QNPLLTYLNCARNTLTEI-D-----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CSSCCS-CCC--CT-TCTTCCEEECTTSCCSCC-C-----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCCcCC-eec--CC-CCCcCCEEECCCCcccee-c-----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 555555 233 22 245555555555555432 1 122334555555555333222 23445555555555555
Q ss_pred CccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcC
Q 046050 342 FTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSC 421 (779)
Q Consensus 342 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 421 (779)
+++ +| +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|++++..+
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~-- 250 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV-- 250 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC--
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH--
Confidence 553 22 44455555555555555532 14445555555555555553 23 4455555555555555554321
Q ss_pred cCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEE
Q 046050 422 FSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLID 501 (779)
Q Consensus 422 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 501 (779)
..+++|+.|+++.|. ++.|++++|.+.+.+| +..+++|+.|++++|+..+.+|. ..++|+.|+
T Consensus 251 ~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~ 313 (457)
T 3bz5_A 251 STLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELD 313 (457)
T ss_dssp TTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC
T ss_pred HHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEec
Confidence 123344444444432 2234444444443333 23344444444444444333332 122233332
Q ss_pred ccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceee
Q 046050 502 LSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMF 581 (779)
Q Consensus 502 Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 581 (779)
+++ .+.|+
T Consensus 314 l~~------------------------------------------------------------------------~~~L~ 321 (457)
T 3bz5_A 314 LSQ------------------------------------------------------------------------NPKLV 321 (457)
T ss_dssp CTT------------------------------------------------------------------------CTTCC
T ss_pred hhh------------------------------------------------------------------------cccCC
Confidence 222 24688
Q ss_pred EEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCc
Q 046050 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN 661 (779)
Q Consensus 582 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 661 (779)
.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.++|. ..+..|..+++++|+
T Consensus 322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS 385 (457)
T ss_dssp EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB
T ss_pred EEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCc
Confidence 899999999974 3 8999999999999999985 35677788999999976 356788999999999
Q ss_pred CcccCCCCC
Q 046050 662 LSGKVPDRV 670 (779)
Q Consensus 662 l~~~~p~~~ 670 (779)
++|.+|..+
T Consensus 386 l~g~ip~~~ 394 (457)
T 3bz5_A 386 LTIAVSPDL 394 (457)
T ss_dssp EEEECCTTC
T ss_pred EEEEcChhH
Confidence 999999853
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=329.67 Aligned_cols=322 Identities=20% Similarity=0.180 Sum_probs=290.3
Q ss_pred cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCC
Q 046050 309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388 (779)
Q Consensus 309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 388 (779)
+.++.+++.++ .+|..+ .++++.|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777777 445443 368999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCch
Q 046050 389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPN 465 (779)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~ 465 (779)
.+++..+..|.++++|++|++++|++.+..+..+. +++|++|++++|.+++..+..|... |+.|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99977777889999999999999999998888777 8999999999999999888877766 99999999999988888
Q ss_pred hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050 466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE 545 (779)
Q Consensus 466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (779)
.+..+++|+.|++++|++.+..+..|..+++|+.|++++|+..+.+|...+.
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------- 222 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---------------------------- 222 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----------------------------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc----------------------------
Confidence 8999999999999999999988889999999999999999988777765411
Q ss_pred ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050 546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 625 (779)
..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++
T Consensus 223 -------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 223 -------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp -------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred -------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 2368999999999996555789999999999999999998888999999
Q ss_pred CCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050 626 SQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 626 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l 692 (779)
++|+.|+|++|++++..|..|..+++|++|++++|++++..+..+..+..++.+.+++||+.|+|.+
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 9999999999999999999999999999999999999987777778889999999999999999864
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.9e-34 Score=316.57 Aligned_cols=349 Identities=28% Similarity=0.349 Sum_probs=274.2
Q ss_pred CccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEE
Q 046050 180 KFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTI 259 (779)
Q Consensus 180 ~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 259 (779)
+.+++.|+++++.+.. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3489999999999874 44 4788999999999999998 5555 5899999999999999998755 8999999999
Q ss_pred EccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccC
Q 046050 260 DVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDA 339 (779)
Q Consensus 260 ~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 339 (779)
++++|.++ .++. +. .+++|++|++++|.+.+ ++ ...++++|+.|+++ |.+.+.. .+..+++|++|++++
T Consensus 118 ~L~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~-~~----~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 118 TLFNNQIT-DIDP-LK-NLTNLNRLELSSNTISD-IS----ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISS 186 (466)
T ss_dssp ECCSSCCC-CCGG-GT-TCTTCSEEEEEEEEECC-CG----GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCS
T ss_pred ECCCCCCC-CChH-Hc-CCCCCCEEECCCCccCC-Ch----hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcC
Confidence 99999998 5665 44 48999999999999874 23 23456699999997 4555332 378899999999999
Q ss_pred CcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCC
Q 046050 340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP 419 (779)
Q Consensus 340 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 419 (779)
|.+.+. ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 998743 347888999999999999986655 77788999999999988753 357788888888888888875544
Q ss_pred cCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCE
Q 046050 420 SCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQL 499 (779)
Q Consensus 420 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 499 (779)
...+++|+.|++++|. +++..+ +..+++|+.|++++|++++..+ +..+++|+.
T Consensus 261 -~~~l~~L~~L~l~~n~----------------------l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQ----------------------ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp -GTTCTTCSEEECCSSC----------------------CCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred -hhcCCCCCEEECCCCc----------------------cCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 2225555555555554 443322 6677888888888888876544 677888888
Q ss_pred EEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccce
Q 046050 500 IDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKI 579 (779)
Q Consensus 500 L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 579 (779)
|++++|++++..| + ..++.
T Consensus 314 L~L~~n~l~~~~~--~-----------------------------------------------------------~~l~~ 332 (466)
T 1o6v_A 314 LTLYFNNISDISP--V-----------------------------------------------------------SSLTK 332 (466)
T ss_dssp EECCSSCCSCCGG--G-----------------------------------------------------------GGCTT
T ss_pred EECcCCcCCCchh--h-----------------------------------------------------------ccCcc
Confidence 8888888875443 1 11467
Q ss_pred eeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchh
Q 046050 580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQ 645 (779)
Q Consensus 580 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 645 (779)
|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++ .|..
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 88888888888854 468889999999999999998777 8999999999999999996 4433
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-34 Score=316.69 Aligned_cols=315 Identities=19% Similarity=0.171 Sum_probs=159.3
Q ss_pred cCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCC
Q 046050 29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL 108 (779)
Q Consensus 29 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 108 (779)
+.++++|++|++++|.+++. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++. + ++++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 44556666666666666543 2 455666666666666665442 2 55566666666666666543 2 5566666
Q ss_pred CEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEEC
Q 046050 109 RILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISL 188 (779)
Q Consensus 109 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L 188 (779)
++|++++|+++ .++ ++.+++|++|++++|++++ + .+.+++ +|++|++
T Consensus 109 ~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~-------------------------~L~~L~l 155 (457)
T 3bz5_A 109 TYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNT-------------------------QLTELDC 155 (457)
T ss_dssp CEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCT-------------------------TCCEEEC
T ss_pred CEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCC-------------------------cCCEEEC
Confidence 66666666665 342 5556666666666666553 1 133344 4444444
Q ss_pred CCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCc
Q 046050 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQG 268 (779)
Q Consensus 189 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 268 (779)
++|...+.+ .+..+++|++|++++|+++ .+| +..+++|++|++++|++++. .+..+++|++|++++|+++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~- 225 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT- 225 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-
Confidence 444322222 2444555666666666555 243 24555666666666665553 3555566666666666665
Q ss_pred CCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCc
Q 046050 269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPE 348 (779)
Q Consensus 269 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 348 (779)
.+| +. .+++|+.|++++|++++..+ ..+++|+.|++++| +|+.|++++|.+.+.+|
T Consensus 226 ~ip--~~-~l~~L~~L~l~~N~l~~~~~------~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 226 EID--VT-PLTQLTYFDCSVNPLTELDV------STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CCC--CT-TCTTCSEEECCSSCCSCCCC------TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred ccC--cc-ccCCCCEEEeeCCcCCCcCH------HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 344 22 24555566665555554321 12224555554433 23344455555444433
Q ss_pred cccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCccc
Q 046050 349 NLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT 428 (779)
Q Consensus 349 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~ 428 (779)
+..+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++. + ...++.|+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~-l~~l~~L~ 342 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D-VSHNTKLK 342 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C-CTTCTTCS
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c-cccCCcCc
Confidence 33455555555555554444442 2233333333322 4555555555555542 1 22244444
Q ss_pred EEEccCCcCc
Q 046050 429 QVHLSRNKIE 438 (779)
Q Consensus 429 ~L~l~~n~l~ 438 (779)
.|++++|+++
T Consensus 343 ~L~l~~N~l~ 352 (457)
T 3bz5_A 343 SLSCVNAHIQ 352 (457)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 4444444444
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-34 Score=311.77 Aligned_cols=335 Identities=18% Similarity=0.186 Sum_probs=222.0
Q ss_pred CCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCC
Q 046050 253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNL 332 (779)
Q Consensus 253 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 332 (779)
+++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+ .++++|++|++++|.+++..+..+..+++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhc---cCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 467777777777776 6777766657778888777777765444333 233367777777777766666666677777
Q ss_pred CEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCc
Q 046050 333 VTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVN 412 (779)
Q Consensus 333 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 412 (779)
++|++++|+++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 7777777777744334456677777777777777766666677777777777777776643 2345666777777777
Q ss_pred cCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc
Q 046050 413 NISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC 492 (779)
Q Consensus 413 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 492 (779)
.+++.. ....|++|++++|.+...+.. ..++|+.|++++|++++. ..+.
T Consensus 197 ~l~~~~----~~~~L~~L~l~~n~l~~~~~~-------------------------~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 197 LLSTLA----IPIAVEELDASHNSINVVRGP-------------------------VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp CCSEEE----CCSSCSEEECCSSCCCEEECC-------------------------CCSSCCEEECCSSCCCCC--GGGG
T ss_pred cccccC----CCCcceEEECCCCeeeecccc-------------------------ccccccEEECCCCCCccc--HHHc
Confidence 665321 123455555555555443221 124555555555555532 3455
Q ss_pred CCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeee
Q 046050 493 LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYY 572 (779)
Q Consensus 493 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (779)
.+++|++|++++|++++..|..+ +
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~-------~------------------------------------------------- 269 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPF-------V------------------------------------------------- 269 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGG-------T-------------------------------------------------
T ss_pred CCCCccEEECCCCcCCCcChhHc-------c-------------------------------------------------
Confidence 55555555555555554444333 0
Q ss_pred cccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccC
Q 046050 573 QGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652 (779)
Q Consensus 573 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 652 (779)
.+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++.. | +..+++|
T Consensus 270 ---~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 270 ---KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp ---TCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred ---ccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 1344555666666655 34555677889999999999998 5777788999999999999999854 3 6778899
Q ss_pred cEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 653 AIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 653 ~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
+.|++++|+++|.+.. ..+..+....+.+++..|.++
T Consensus 342 ~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred CEEEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 9999999999987665 456777777888888888754
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=322.84 Aligned_cols=335 Identities=19% Similarity=0.189 Sum_probs=225.7
Q ss_pred CCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCC
Q 046050 253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNL 332 (779)
Q Consensus 253 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 332 (779)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..+..++++++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHh---cCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 456777777777776 6777666667777777777777775554444 233467777777777776666666677777
Q ss_pred CEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCc
Q 046050 333 VTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVN 412 (779)
Q Consensus 333 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 412 (779)
++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 77777777777444445567777777777777777666666777777777777777766432 344566777777777
Q ss_pred cCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc
Q 046050 413 NISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC 492 (779)
Q Consensus 413 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 492 (779)
.+++.. ....|+.|++++|.+...++.. .++|+.|+|++|.+++ +..+.
T Consensus 203 ~l~~l~----~~~~L~~L~ls~n~l~~~~~~~-------------------------~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 203 LLSTLA----IPIAVEELDASHNSINVVRGPV-------------------------NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp CCSEEE----CCTTCSEEECCSSCCCEEECSC-------------------------CSCCCEEECCSSCCCC--CGGGG
T ss_pred cccccc----CCchhheeeccCCccccccccc-------------------------CCCCCEEECCCCCCCC--Chhhc
Confidence 665321 1234555555555554433211 1345555555555553 23455
Q ss_pred CCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeee
Q 046050 493 LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYY 572 (779)
Q Consensus 493 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (779)
.+++|+.|++++|.+++..|..+ +.
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~-------~~------------------------------------------------ 276 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPF-------VK------------------------------------------------ 276 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGG-------TT------------------------------------------------
T ss_pred cCCCCCEEECCCCccCCCCHHHh-------cC------------------------------------------------
Confidence 55555555555555554444443 11
Q ss_pred cccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccC
Q 046050 573 QGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL 652 (779)
Q Consensus 573 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 652 (779)
++.|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|
T Consensus 277 ----l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 277 ----MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp ----CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred ----ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 3455556666666653 4556677889999999999998 6788889999999999999999855 3 6678899
Q ss_pred cEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 653 AIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 653 ~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
+.|++++|+++|.++. ..+..+....+.+++..|+.+
T Consensus 348 ~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred CEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 9999999999988765 467778888889999999864
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-33 Score=292.51 Aligned_cols=258 Identities=32% Similarity=0.522 Sum_probs=224.8
Q ss_pred CCCCEEEccCCccCC--CcchhhhCCCCCceEEccC-CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccE
Q 046050 354 SLLGGLYLSDNHISG--KIPKWLGNLSNLVDIIMPN-NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQ 429 (779)
Q Consensus 354 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~ 429 (779)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+. +++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--- 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--- 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT---
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC---
Confidence 568888888888887 7888888888888888884 888888888888888888888888888876666543 444
Q ss_pred EEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCC-CCCEEEccCCcCc
Q 046050 430 VHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLK-QLQLIDLSHNNLS 508 (779)
Q Consensus 430 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 508 (779)
|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++
T Consensus 127 -------------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 127 -------------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp -------------------CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred -------------------CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 55566666666667888899999999999999999999999999998 9999999999999
Q ss_pred ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050 509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN 588 (779)
Q Consensus 509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 588 (779)
+.+|..+.. ++ |+.|++++|
T Consensus 188 ~~~~~~~~~-----------------------------------------------------------l~-L~~L~Ls~N 207 (313)
T 1ogq_A 188 GKIPPTFAN-----------------------------------------------------------LN-LAFVDLSRN 207 (313)
T ss_dssp EECCGGGGG-----------------------------------------------------------CC-CSEEECCSS
T ss_pred ccCChHHhC-----------------------------------------------------------Cc-ccEEECcCC
Confidence 888877611 23 889999999
Q ss_pred ccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 589 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
++++.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999977666 88999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCcccCCCCCCCCCCCCCC
Q 046050 669 RVGQFATFTENSYDGNSLLCGQPLSESC 696 (779)
Q Consensus 669 ~~~~~~~l~~~~~~~N~~lc~~~l~~~c 696 (779)
. +++.+++.+.+.+||++||.|+. .|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred C-ccccccChHHhcCCCCccCCCCC-CC
Confidence 6 88999999999999999998876 46
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=298.02 Aligned_cols=310 Identities=19% Similarity=0.194 Sum_probs=220.9
Q ss_pred cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386 (779)
Q Consensus 307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 386 (779)
+++.|++++|.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..++++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 45555555555554433344555666666666666655444556666666666666666665555556666666666666
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCch
Q 046050 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465 (779)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 465 (779)
+|.++...+..|..+++|++|++++|++++..+..+. +++|++|++++|++++.....+ ..|+.|++++|.+++.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~L~~L~l~~n~l~~~--- 201 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-PSLFHANVSYNLLSTL--- 201 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGC-TTCSEEECCSSCCSEE---
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccc-cccceeeccccccccc---
Confidence 6666644334455666666666666666655555444 5566666666666665432222 2277777777776632
Q ss_pred hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050 466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE 545 (779)
Q Consensus 466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (779)
...++|++|++++|++... |. ...++|+.|++++|++++. +.+
T Consensus 202 --~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l------------------------------ 244 (390)
T 3o6n_A 202 --AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWL------------------------------ 244 (390)
T ss_dssp --ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGG------------------------------
T ss_pred --CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHH------------------------------
Confidence 3446899999999999865 33 2357899999999999842 222
Q ss_pred ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050 546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 625 (779)
..++.|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+
T Consensus 245 -----------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 245 -----------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp -----------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred -----------------------------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 125789999999999998889999999999999999999995 67777889
Q ss_pred CCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 626 SQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 626 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
++|+.|++++|+++ .+|..+..+++|++|++++|+++.. | +..+..++.+.+++||+.|.+.
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence 99999999999998 6788899999999999999999854 4 4678899999999999999763
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-31 Score=281.69 Aligned_cols=306 Identities=23% Similarity=0.286 Sum_probs=187.9
Q ss_pred CCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCC
Q 046050 251 NPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLT 330 (779)
Q Consensus 251 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 330 (779)
..+++|++|+++++.+. .++. +.. +++|++|++++|.+++..+ ..++++|++|++++|.+++. ..+..++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~--~~~~~l~ 110 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDI--SALQNLT 110 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred hhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCc--hHHcCCC
Confidence 35567777777777776 5543 332 5666666666666653221 22333555555555555432 2344555
Q ss_pred CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050 331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 410 (779)
+|++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 111 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 555555555555422 21 4445555555555553332222 24445555555555554443222 4444444444444
Q ss_pred CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccc
Q 046050 411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ 490 (779)
Q Consensus 411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 490 (779)
+ |.+.+..+......|+.|++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 186 ~-----------------------n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 186 Y-----------------------NQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp T-----------------------SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred C-----------------------CcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 4 444443331111226666666666664433 6778888888888888875444
Q ss_pred ccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCcee
Q 046050 491 LCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSY 570 (779)
Q Consensus 491 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (779)
+..+++|++|++++|++++ ++ .+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~~-~~------------------------------------------------------- 261 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-IN-AV------------------------------------------------------- 261 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-GG-------------------------------------------------------
T ss_pred hhcCCCCCEEECCCCccCC-Ch-hH-------------------------------------------------------
Confidence 7788888888888888863 22 12
Q ss_pred eecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc
Q 046050 571 YYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY 650 (779)
Q Consensus 571 ~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 650 (779)
..+++|+.|++++|++++. +.+..+++|+.|++++|++++..|..++++++|+.|++++|++++..| +..++
T Consensus 262 ----~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 262 ----KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp ----TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred ----hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 1146788888888888853 457888999999999999988888889999999999999999987666 78889
Q ss_pred cCcEEEccCCcCc
Q 046050 651 ALAIFSVAHNNLS 663 (779)
Q Consensus 651 ~L~~L~ls~N~l~ 663 (779)
+|++|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999875
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-32 Score=310.60 Aligned_cols=310 Identities=19% Similarity=0.195 Sum_probs=226.5
Q ss_pred cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386 (779)
Q Consensus 307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 386 (779)
+++.+++++|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 45555555555554444445556666666666666665555566666666666666666666555566666666666666
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCch
Q 046050 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465 (779)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 465 (779)
+|.+++..+..|.++++|++|++++|.+++..|..+. +++|+.|++++|.+++.....+ ..|+.|++++|.+++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~L~l~~n~l~~---- 206 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-PSLFHANVSYNLLST---- 206 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGC-TTCSEEECCSSCCSE----
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhh-hhhhhhhcccCcccc----
Confidence 6666644444456666666666666666666555554 5666666666666665543322 227777777777764
Q ss_pred hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050 466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE 545 (779)
Q Consensus 466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (779)
+...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+
T Consensus 207 -l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l------------------------------ 250 (597)
T 3oja_B 207 -LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWL------------------------------ 250 (597)
T ss_dssp -EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGG------------------------------
T ss_pred -ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhh------------------------------
Confidence 234568999999999998554432 3689999999999985 2322
Q ss_pred ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050 546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 625 (779)
..++.|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..+..+
T Consensus 251 -----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 251 -----------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp -----------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred -----------------------------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 125789999999999999999999999999999999999995 67778889
Q ss_pred CCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 626 SQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 626 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
++|+.|+|++|+++ .+|..+..+++|++|++++|++++. | +..+..+..+.+++||+.|.+.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 99999999999999 6888899999999999999999865 3 3578889999999999999763
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-31 Score=280.62 Aligned_cols=306 Identities=25% Similarity=0.347 Sum_probs=153.3
Q ss_pred cCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCC
Q 046050 54 AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSL 133 (779)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L 133 (779)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++ .+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTC
T ss_pred hhcccccEEEEeCCcccc-ch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcC
Confidence 344556666666665532 22 35556666666666666553322 556666666666666665 343 35566666
Q ss_pred CEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEcc
Q 046050 134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLS 213 (779)
Q Consensus 134 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls 213 (779)
++|++++|.+++ ++ .+..++ +|++|++++|...... ..+..+++|++|+++
T Consensus 113 ~~L~l~~n~i~~-~~--~~~~l~-------------------------~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 113 RELYLNEDNISD-IS--PLANLT-------------------------KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT 163 (347)
T ss_dssp SEEECTTSCCCC-CG--GGTTCT-------------------------TCCEEECTTCTTCCCC-GGGTTCTTCCEEECC
T ss_pred CEEECcCCcccC-ch--hhccCC-------------------------ceeEEECCCCCCcccc-cchhhCCCCcEEEec
Confidence 666666665542 11 122222 3333333333222122 224555556666666
Q ss_pred CCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCc
Q 046050 214 HMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG 293 (779)
Q Consensus 214 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~ 293 (779)
+|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.+++++|.++ .++. + ..+++|++|++++|.+++
T Consensus 164 ~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 164 ESKVK-DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-V-ANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp SSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC
T ss_pred CCCcC-Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-h-hcCCcCCEEEccCCccCC
Confidence 66555 2332 3455556666666655554322 455555566666665555 3322 2 224555555555555542
Q ss_pred ccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchh
Q 046050 294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKW 373 (779)
Q Consensus 294 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 373 (779)
..+ ...+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..
T Consensus 236 ~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 236 LSP-----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CGG-----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred Ccc-----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 221 12233455555555555432 2344555555555555555532 23455555555555555555555555
Q ss_pred hhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050 374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS 415 (779)
Q Consensus 374 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 415 (779)
+..+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5555555555555555554433 455555555555555543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9e-31 Score=276.12 Aligned_cols=267 Identities=21% Similarity=0.256 Sum_probs=153.5
Q ss_pred cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386 (779)
Q Consensus 307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 386 (779)
+++.|++++|.+++..+..+.++++|++|++++|++++..|..+.++++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4555555555555554555666666666666666666555666666666666666666666 3333332 566667777
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCccCcc--cCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCc
Q 046050 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISG--SLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP 464 (779)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 464 (779)
+|.+++..+..|..+++|+.|++++|.++. ..+..+...+|+.|++++|++++.+.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~---------------------- 189 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK---------------------- 189 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS----------------------
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc----------------------
Confidence 666665555556666777777777776642 44444442255555555555443222
Q ss_pred hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccc
Q 046050 465 NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAG 544 (779)
Q Consensus 465 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (779)
.+. ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+
T Consensus 190 -~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~----------------------------- 237 (332)
T 2ft3_A 190 -DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL----------------------------- 237 (332)
T ss_dssp -SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-----------------------------
T ss_pred -ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-----------------------------
Confidence 111 355555555555555555555555555555555555553322222
Q ss_pred cccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhC
Q 046050 545 EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH 624 (779)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 624 (779)
..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 238 ------------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 238 ------------------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp ------------------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred ------------------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 01344555555555555 55556666677777777777776655555554
Q ss_pred C------CCCCEEECCCCcCc--CCCchhhhhcccCcEEEccCCc
Q 046050 625 L------SQIESLDLSYNMLQ--GKIPTQLVELYALAIFSVAHNN 661 (779)
Q Consensus 625 l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 661 (779)
. ++|+.|++++|++. +..|.+|..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3 56777777777776 5666777777777777777764
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.9e-31 Score=278.07 Aligned_cols=254 Identities=28% Similarity=0.461 Sum_probs=214.4
Q ss_pred CCCCEEEccCCcCcc--ccCccccCCCCCCEEEccC-CccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCE
Q 046050 330 TNLVTLQLDANQFTG--GIPENLLNCSLLGGLYLSD-NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTV 406 (779)
Q Consensus 330 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 406 (779)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|.+++..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999899999999999999
Q ss_pred EEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCC-CCcEEEccCCcCc
Q 046050 407 LDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLS-HLSYLILANNNLE 484 (779)
Q Consensus 407 L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 484 (779)
|++++|.+++..|..+. +++|++|++++|+++ +.+|..+..++ +|++|++++|+++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~----------------------~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRIS----------------------GAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCE----------------------EECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCccc----------------------CcCCHHHhhhhhcCcEEECcCCeee
Confidence 99999999987776655 556665555555544 45666677776 7888888888888
Q ss_pred ccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEE
Q 046050 485 GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFR 564 (779)
Q Consensus 485 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (779)
+..|..+..++ |++|++++|++++..|..+ +
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~-------~----------------------------------------- 218 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLF-------G----------------------------------------- 218 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGC-------C-----------------------------------------
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHH-------h-----------------------------------------
Confidence 77787777776 8888888888876655544 1
Q ss_pred EcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCch
Q 046050 565 TKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644 (779)
Q Consensus 565 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 644 (779)
.+++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|+|++|++++.+|.
T Consensus 219 -----------~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 219 -----------SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp -----------TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred -----------cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 146778888888888866555 78899999999999999999999999999999999999999999998
Q ss_pred hhhhcccCcEEEccCCcCcccCC
Q 046050 645 QLVELYALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 645 ~l~~l~~L~~L~ls~N~l~~~~p 667 (779)
. ..+++|+.+++++|+.-+..|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEESTT
T ss_pred C-ccccccChHHhcCCCCccCCC
Confidence 7 889999999999999443333
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.5e-30 Score=268.94 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=48.0
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhC------CCCCCEEECCCCcCcC--CCchhhhhc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH------LSQIESLDLSYNMLQG--KIPTQLVEL 649 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l 649 (779)
++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.. .+.|+.|++++|++.. ..|..|..+
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 34444555555554 45555566666666666666666555555543 2566777777777653 556667777
Q ss_pred ccCcEEEccCCc
Q 046050 650 YALAIFSVAHNN 661 (779)
Q Consensus 650 ~~L~~L~ls~N~ 661 (779)
..++.+++++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 777777777764
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.6e-33 Score=309.28 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=31.4
Q ss_pred cccEEECCCCcCCCCcch-hhhCCCCCCEEEccCCCCCCc----CchhhhhcCCCCCEEECcCCcccc
Q 046050 182 QLQNISLSGCRCDFTFPR-FLYYQHELRYVDLSHMNLRGE----FPNWLLENNKELETLLLANNSLSG 244 (779)
Q Consensus 182 ~L~~L~L~~n~~~~~~~~-~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~L~~n~~~~ 244 (779)
+|++|++++|+++..... .+..+++|++|++++|.+++. ++.. +..+++|++|++++|.+.+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCCh
Confidence 556666666655433222 245556666666666665521 1222 2444555555555555543
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.3e-33 Score=307.32 Aligned_cols=357 Identities=16% Similarity=0.117 Sum_probs=204.8
Q ss_pred CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCcccccccc-CCC--
Q 046050 255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSF-NLT-- 330 (779)
Q Consensus 255 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~-- 330 (779)
+|++||+++|.++......++..+++|++|++++|.++......+ .....+++|++|++++|.+.+..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 445555555555422222223334555555555555543221111 1222334555555555555433222221 233
Q ss_pred --CCCEEEccCCcCcc----ccCccccCCCCCCEEEccCCccCCCcchhhh-----CCCCCceEEccCCCCCCCc----c
Q 046050 331 --NLVTLQLDANQFTG----GIPENLLNCSLLGGLYLSDNHISGKIPKWLG-----NLSNLVDIIMPNNHLEGPI----P 395 (779)
Q Consensus 331 --~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~----~ 395 (779)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 46666666666553 2355556666666666666665533332222 2345666666666665432 4
Q ss_pred hhhcCCCCCCEEEccCccCcccCCcCcC------CCcccEEEccCCcCcccc----hhhHhhc--ceEEEccCccccCcC
Q 046050 396 ANLCKLNFLTVLDLEVNNISGSLPSCFS------SWLLTQVHLSRNKIEGQL----EDVFGDI--LVTLDLSYNRFSGRI 463 (779)
Q Consensus 396 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~----~~~~~~~--L~~L~L~~n~l~~~~ 463 (779)
..+..+++|++|++++|.++...+..+. .++|++|++++|.++... +..+... |+.|++++|.+++..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 4445566666666666666543222211 336666677666666543 2222222 777777777665432
Q ss_pred -----chhhhcCCCCcEEEccCCcCccc----CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCC
Q 046050 464 -----PNWIDKLSHLSYLILANNNLEGE----VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG 534 (779)
Q Consensus 464 -----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~ 534 (779)
+..+..+++|++|++++|++++. ++..+..+++|++|++++|++.+..+..+.....
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-------------- 309 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-------------- 309 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc--------------
Confidence 22223577888888888887754 4566667788888888888776433333211000
Q ss_pred CCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCC----CCccccCcccCcEEEcC
Q 046050 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE----IPFQIGYLNMIRALNLS 610 (779)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls 610 (779)
...+.|+.|++++|.+++. ++..+..+++|+.|+++
T Consensus 310 ----------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 310 ----------------------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp ----------------------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred ----------------------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 0024677888888887754 35556667888888888
Q ss_pred CCcCCccCchhhhC-----CCCCCEEECCCCcCcC----CCchhhhhcccCcEEEccCCcCccc
Q 046050 611 HNNLMGTIPSTFSH-----LSQIESLDLSYNMLQG----KIPTQLVELYALAIFSVAHNNLSGK 665 (779)
Q Consensus 611 ~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~ 665 (779)
+|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 88887665555543 6788888888888875 6777888888888888888888754
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=266.85 Aligned_cols=265 Identities=21% Similarity=0.245 Sum_probs=139.2
Q ss_pred CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050 331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 410 (779)
+++.++++++.++ .+|..+. +.+++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555666665555 3444332 456667777777666555566677777777777777766666667777777777777
Q ss_pred CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccC--cCchhhhcCCCCcEEEccCCcCccc
Q 046050 411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSG--RIPNWIDKLSHLSYLILANNNLEGE 486 (779)
Q Consensus 411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 486 (779)
+|+++......+ ++|++|++++|.+++..+..+... |++|++++|.+.. ..+..+..+++|++|++++|+++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 777663332222 445555555555554444433332 4444444444431 334445555555555555555543
Q ss_pred CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050 487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK 566 (779)
Q Consensus 487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (779)
+|..+. ++|++|++++|++++..|..+ .
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~-------~------------------------------------------- 213 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASL-------K------------------------------------------- 213 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGG-------T-------------------------------------------
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHh-------c-------------------------------------------
Confidence 222221 455555555555543333332 0
Q ss_pred CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh
Q 046050 567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL 646 (779)
Q Consensus 567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 646 (779)
.+++|+.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|
T Consensus 214 ---------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 214 ---------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp ---------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ---------CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 0234555555555555444445555555555555555555 444455555555555555555554444444
Q ss_pred hh------cccCcEEEccCCcCc
Q 046050 647 VE------LYALAIFSVAHNNLS 663 (779)
Q Consensus 647 ~~------l~~L~~L~ls~N~l~ 663 (779)
.. .+.|+.+++++|++.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcccccccccccceEeecCccc
Confidence 22 244555555555553
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.1e-30 Score=269.22 Aligned_cols=285 Identities=19% Similarity=0.250 Sum_probs=137.6
Q ss_pred CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050 331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 410 (779)
+++.++++++.++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3555555555554 3443332 455566666666554445555566666666666666655555556666666666666
Q ss_pred CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCcccc--CcCchhhhcCCCCcEEEccCCcCccc
Q 046050 411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS--GRIPNWIDKLSHLSYLILANNNLEGE 486 (779)
Q Consensus 411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~ 486 (779)
+|+++...+..+ ++|++|++++|++++.++..+... |+.|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 666553322222 334444444444433332222221 333333333332 1333444444 55555555555553
Q ss_pred CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050 487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK 566 (779)
Q Consensus 487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (779)
+|..+. ++|+.|++++|++++..|..+ .
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l-------~------------------------------------------- 214 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDL-------L------------------------------------------- 214 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSS-------T-------------------------------------------
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHh-------c-------------------------------------------
Confidence 232222 455555555555553322222 0
Q ss_pred CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh
Q 046050 567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL 646 (779)
Q Consensus 567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 646 (779)
.+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 215 ---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 215 ---------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp ---------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred ---------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 0234555555555555544445555555555555555555 455555555555555555555554444444
Q ss_pred hhc------ccCcEEEccCCcCc--ccCCCCCCcCCCCCCCcccCC
Q 046050 647 VEL------YALAIFSVAHNNLS--GKVPDRVGQFATFTENSYDGN 684 (779)
Q Consensus 647 ~~l------~~L~~L~ls~N~l~--~~~p~~~~~~~~l~~~~~~~N 684 (779)
... ..|+.|++++|++. +..|.++..+..++.+.+++|
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 332 34555555555554 333343444444444444444
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=260.63 Aligned_cols=275 Identities=19% Similarity=0.159 Sum_probs=158.3
Q ss_pred cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCC
Q 046050 309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388 (779)
Q Consensus 309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 388 (779)
...+.+++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 34455555555 2333222 35666666666666444445666666666666666666555555666666666666666
Q ss_pred CCCCCcchhhcCCCCCCEEEccCccCcccCC-cCcC-CCcccEEEccCC-cCcccchhhHhhcceEEEccCccccCcCch
Q 046050 389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRN-KIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465 (779)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 465 (779)
++++..+..|.++++|++|++++|++++..+ ..+. +++|++|++++| .+... .+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------~~~ 168 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI----------------------QRK 168 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----------------------CTT
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc----------------------CHH
Confidence 6665444446666666666666666664433 2333 455555555554 23322 233
Q ss_pred hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050 466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE 545 (779)
Q Consensus 466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (779)
.+.++++|++|++++|++++..|..+..+++|++|++++|++. .+|...+.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------------- 219 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD---------------------------- 219 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH----------------------------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh----------------------------
Confidence 3444445555555555555444555555555555555555543 22322211
Q ss_pred ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccc---cCcccCcEEEcCCCcCCc----cC
Q 046050 546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQI---GYLNMIRALNLSHNNLMG----TI 618 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~----~~ 618 (779)
.+++|+.|++++|++++..+..+ .....++.++|+++.+++ .+
T Consensus 220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 02345555555555554333322 234556677777777765 46
Q ss_pred chhhhCCCCCCEEECCCCcCcCCCchh-hhhcccCcEEEccCCcCcccCCC
Q 046050 619 PSTFSHLSQIESLDLSYNMLQGKIPTQ-LVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 619 p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
|+.+.++++|+.|++++|+++ .+|.. |..+++|++|++++|+++|.+|.
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 788889999999999999998 45544 58889999999999999988874
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=252.00 Aligned_cols=256 Identities=17% Similarity=0.197 Sum_probs=152.5
Q ss_pred CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050 58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR 137 (779)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~ 137 (779)
+|++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..|+++++|++|++++|+++ .++...|+.+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 45555555555533222 24445555555555555555444444555555555555555554 44443345555555555
Q ss_pred cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcc-hhhhCCCCCCEEEccCCC
Q 046050 138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFP-RFLYYQHELRYVDLSHMN 216 (779)
Q Consensus 138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~~~~L~~L~Ls~n~ 216 (779)
+++|+++ ...+ ..+..+++|++|++++|.
T Consensus 131 L~~n~l~--------------------------------------------------~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 131 LLGNPYK--------------------------------------------------TLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CTTCCCS--------------------------------------------------SSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCCCc--------------------------------------------------ccCchhhhccCCCCcEEECCCCc
Confidence 5555443 1111 245667778888888874
Q ss_pred -CCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCccc
Q 046050 217 -LRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI 295 (779)
Q Consensus 217 -l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 295 (779)
+. .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.++ .+|..++..+++|+.|++++|.+++..
T Consensus 161 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 161 TFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccc
Confidence 54 554444577888999999999888888888999999999999999997 788877766889999999999998665
Q ss_pred CcccccccCCccccEEEccCCcCCc----cccccccCCCCCCEEEccCCcCccccCcc-ccCCCCCCEEEccCCccCC
Q 046050 296 PCSLHMTMGCFSLQILALSNNSLQG----HIFSRSFNLTNLVTLQLDANQFTGGIPEN-LLNCSLLGGLYLSDNHISG 368 (779)
Q Consensus 296 ~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~ 368 (779)
+..+........++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 5544333333456666666665553 23344445555555555555555 23322 3455555555555555543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=248.80 Aligned_cols=234 Identities=20% Similarity=0.233 Sum_probs=133.5
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC--cchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEE
Q 046050 354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP--IPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVH 431 (779)
Q Consensus 354 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 431 (779)
+++++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+....+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3455555555555433333344555555555555554421 13444445555555555555543222222233344333
Q ss_pred ccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcc-c
Q 046050 432 LSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSG-T 510 (779)
Q Consensus 432 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 510 (779)
+++|++++..+ ...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++ .
T Consensus 108 l~~n~l~~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 108 FQHSNLKQMSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CTTSEEESSTT---------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCCCccccccc---------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 33333332211 1334555666666666666665556666666666666666666654 2
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050 511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL 590 (779)
Q Consensus 511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 590 (779)
+|..+ ..+++|++|++++|++
T Consensus 167 ~~~~~-----------------------------------------------------------~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 167 LPDIF-----------------------------------------------------------TELRNLTFLDLSQCQL 187 (306)
T ss_dssp ECSCC-----------------------------------------------------------TTCTTCCEEECTTSCC
T ss_pred chhHH-----------------------------------------------------------hhCcCCCEEECCCCCc
Confidence 33322 0134566666666666
Q ss_pred CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc-cCcEEEccCCcCcccCC
Q 046050 591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY-ALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p 667 (779)
++..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.++
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 666666777777777777777777766666777777777777777777777777777763 77777777777776654
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.4e-29 Score=286.64 Aligned_cols=300 Identities=16% Similarity=0.082 Sum_probs=186.4
Q ss_pred hCCCCCCEEEccCCCCCCcCchhhhhcCCC-CCEEECcCCc-cccc-CCCCCCCCCCccEEEccCCCCCcCCch---hhh
Q 046050 202 YYQHELRYVDLSHMNLRGEFPNWLLENNKE-LETLLLANNS-LSGF-FQMPVNPLKQLTTIDVSKNFIQGHIPT---GIG 275 (779)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~-L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~---~~~ 275 (779)
..+++|++|++++|.+++..+.++...++. |++|++++|. +... .+.....+++|++|++++|.+++.-.. .+.
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 367888888888887775555555333444 8888888876 2211 111123577888888888877644211 233
Q ss_pred hcCCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCc---cccCcccc
Q 046050 276 AFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFT---GGIPENLL 351 (779)
Q Consensus 276 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~ 351 (779)
..+++|++|++++|.+++.....+ ....++++|+.|++++|.+.+ ++..+..+++|++|+++..... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 347888888888888764333333 334456688888888888775 5567778888888888754322 23334567
Q ss_pred CCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcc-hhhcCCCCCCEEEccCccCcc-cCCcCcC-CCccc
Q 046050 352 NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTVLDLEVNNISG-SLPSCFS-SWLLT 428 (779)
Q Consensus 352 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-~~~L~ 428 (779)
.+++|+.++++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|+++ +.+.. .++.... +++|+
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 7788888888876443 567777788888888888888664433 345778888888888 33332 2222222 56788
Q ss_pred EEEcc-----------CCcCcccchhhHh---hcceEEEccCccccCcCchhhhc-CCCCcEEEcc----CCcCccc---
Q 046050 429 QVHLS-----------RNKIEGQLEDVFG---DILVTLDLSYNRFSGRIPNWIDK-LSHLSYLILA----NNNLEGE--- 486 (779)
Q Consensus 429 ~L~l~-----------~n~l~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~--- 486 (779)
+|+++ .|.+++.....+. ..|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 88877 3455543322221 12666666666666554444444 6666666664 4455542
Q ss_pred --CcccccCCCCCCEEEccC
Q 046050 487 --VPVQLCLLKQLQLIDLSH 504 (779)
Q Consensus 487 --~~~~~~~l~~L~~L~Ls~ 504 (779)
++..+.++++|+.|++++
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEec
Confidence 223345566666666654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.7e-28 Score=253.12 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=196.9
Q ss_pred CEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccC---CcCcCCCcccEEEcc
Q 046050 357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL---PSCFSSWLLTQVHLS 433 (779)
Q Consensus 357 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~L~~L~l~ 433 (779)
+.++.+++.++ .+|..+ .+++++|++++|.++...+..|.++++|+.|++++|.++... ...+.+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~------- 79 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS------- 79 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-------
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc-------
Confidence 45666666665 344333 246667777777666444444566666666666666665221 11111223
Q ss_pred CCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCC
Q 046050 434 RNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIP 512 (779)
Q Consensus 434 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p 512 (779)
|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|
T Consensus 80 ---------------L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 80 ---------------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp ---------------CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred ---------------cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 666666666666 355568889999999999999997665 678999999999999999986665
Q ss_pred chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC
Q 046050 513 SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG 592 (779)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 592 (779)
..+ + .++.|++|++++|.+++
T Consensus 144 ~~~-------~----------------------------------------------------~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 144 GIF-------N----------------------------------------------------GLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp TTT-------T----------------------------------------------------TCTTCCEEECTTCEEGG
T ss_pred hhc-------c----------------------------------------------------cCcCCCEEECCCCcccc
Confidence 544 1 15689999999999986
Q ss_pred -CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCC
Q 046050 593 -EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVG 671 (779)
Q Consensus 593 -~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 671 (779)
..|..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5789999999999999999999988899999999999999999999988888999999999999999999999998888
Q ss_pred cC-CCCCCCcccCCCCCCCCCC
Q 046050 672 QF-ATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 672 ~~-~~l~~~~~~~N~~lc~~~l 692 (779)
.+ ..++.+.+++|++.|+|+.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGG
T ss_pred hhhccCCEEEccCCCeecccCh
Confidence 87 4899999999999998864
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=258.02 Aligned_cols=250 Identities=20% Similarity=0.176 Sum_probs=213.6
Q ss_pred CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEcc
Q 046050 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLS 433 (779)
Q Consensus 355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~ 433 (779)
..+.++.++..++ .+|..+. ++++.|++++|++++..+..|.++++|+.|++++|.+++..+..|. +++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678899998888 5666554 6899999999999988888999999999999999999988877777 8899999999
Q ss_pred CCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCC-cCcccCcccccCCCCCCEEEccCCcCccc
Q 046050 434 RNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-NLEGEVPVQLCLLKQLQLIDLSHNNLSGT 510 (779)
Q Consensus 434 ~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 510 (779)
+|+++..++..|... |++|++++|++++..+..+..+++|++|++++| .+....+..|..+++|++|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999998888777655 999999999998777778889999999999985 455555667889999999999999987 4
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050 511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL 590 (779)
Q Consensus 511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 590 (779)
+|. + ..+++|+.|||++|++
T Consensus 200 ~~~-~-----------------------------------------------------------~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 200 IPN-L-----------------------------------------------------------TPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCC-C-----------------------------------------------------------TTCSSCCEEECTTSCC
T ss_pred ccc-c-----------------------------------------------------------CCCcccCEEECCCCcc
Confidence 442 1 1146788999999999
Q ss_pred CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|.-
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 988888999999999999999999988888999999999999999999988888888899999999999999887764
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.6e-29 Score=289.38 Aligned_cols=403 Identities=17% Similarity=0.128 Sum_probs=231.3
Q ss_pred chhhhhCCCCCCcEEeCCCCcc---------cc------------CCCCCccEEEccccccccccchhhcCC--CCcCEE
Q 046050 6 LLQSLWTPFPNLETLELRDYHL---------EL------------LNFTNLEVLILDGSALHIRFLQSIAVL--TSVKHL 62 (779)
Q Consensus 6 ~~~~~~~~~~~L~~L~Ls~~~~---------~~------------~~l~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L 62 (779)
.++.++..+++|++|+|+++.. .. ..+++|++|+|++|.+++..+..+... ++|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 4567788999999999988643 11 168899999999998887666666553 359999
Q ss_pred ECCCCCCcccCCc-ccccCCCCCcEEEccCcccccc----cChhccCCCCCCEEeCCCCcCc----ccCCchhhcCCCCC
Q 046050 63 SMRNCYLYGTSDF-QGLCELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDIASNQIT----GNISSSPLRYLTSL 133 (779)
Q Consensus 63 ~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~----~~i~~~~~~~l~~L 133 (779)
++++|........ .....+++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++. .+..+++|
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSL 222 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCC
Confidence 9999862111111 1223689999999999988765 3445678899999999999987 23333 45678999
Q ss_pred CEEEcccccccccCCcccccCCCCCcEEECcCCceee--ecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEE
Q 046050 134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFV--EIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVD 211 (779)
Q Consensus 134 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~ 211 (779)
++|++++|.+.+ ++ ..+.++++|+.|+++...... ......+..+.+|+.++++.+. ...+|..+..+++|++|+
T Consensus 223 ~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 223 VSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEE
T ss_pred cEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEe
Confidence 999999998874 33 457778888888887532211 0111234445567777776643 234566666677777777
Q ss_pred ccCCCCCCcCchhhhhcCCCCCEEECcCCcccc-cCCCCCCCCCCccEEEccC-----------CCCCcCCchhhhhcCC
Q 046050 212 LSHMNLRGEFPNWLLENNKELETLLLANNSLSG-FFQMPVNPLKQLTTIDVSK-----------NFIQGHIPTGIGAFLP 279 (779)
Q Consensus 212 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~-----------n~l~~~i~~~~~~~l~ 279 (779)
+++|.+++.....++..+++|++|+++ +.+.. ..+.....+++|++|++++ +.+++.....+...++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 777776544443444666777777776 33322 1111223456666666662 3444222222233356
Q ss_pred CCCEEEccCCcCCcccCcccccccCCccccEEEcc----CCcCCcc-----ccccccCCCCCCEEEccCCc--CccccCc
Q 046050 280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS----NNSLQGH-----IFSRSFNLTNLVTLQLDANQ--FTGGIPE 348 (779)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~ 348 (779)
+|++|+++.|.+++..+..+ ...+++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+.
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred cCeEEEeecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 66666665555554332222 1123355666654 3344432 22223345555555554322 3322222
Q ss_pred cc-cCCCCCCEEEccCCccCC-CcchhhhCCCCCceEEccCCCCCCC-cchhhcCCCCCCEEEccCccCc
Q 046050 349 NL-LNCSLLGGLYLSDNHISG-KIPKWLGNLSNLVDIIMPNNHLEGP-IPANLCKLNFLTVLDLEVNNIS 415 (779)
Q Consensus 349 ~~-~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 415 (779)
.+ ..+++|++|++++|++++ .++..+..+++|++|++++|.+++. .+.....+++|+.|++++|+++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 22 224555555555555543 1233334455555555555554322 2222234555555555555544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6e-27 Score=257.81 Aligned_cols=250 Identities=20% Similarity=0.163 Sum_probs=213.3
Q ss_pred CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEcc
Q 046050 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLS 433 (779)
Q Consensus 355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~ 433 (779)
....++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|+.|++++|.+++..+..|. +++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578888888888 5665543 6899999999999988899999999999999999999988888777 8899999999
Q ss_pred CCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCC-cCcccCcccccCCCCCCEEEccCCcCccc
Q 046050 434 RNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-NLEGEVPVQLCLLKQLQLIDLSHNNLSGT 510 (779)
Q Consensus 434 ~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 510 (779)
+|+++..++..|... |++|++++|++++..+..+.++++|++|++++| .+....+..|..+++|++|++++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999998888777655 999999999998777778889999999999984 5555556678899999999999999873
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050 511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL 590 (779)
Q Consensus 511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 590 (779)
+|. + ..+++|+.|+|++|++
T Consensus 211 ~~~-~-----------------------------------------------------------~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 211 MPN-L-----------------------------------------------------------TPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCC-C-----------------------------------------------------------TTCTTCCEEECTTSCC
T ss_pred ccc-c-----------------------------------------------------------cccccccEEECcCCcC
Confidence 332 1 1146788999999999
Q ss_pred CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++.|.|.-
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 988888999999999999999999988888999999999999999999987778888899999999999999888764
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=7.8e-29 Score=259.11 Aligned_cols=247 Identities=20% Similarity=0.156 Sum_probs=171.9
Q ss_pred CCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEE
Q 046050 352 NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVH 431 (779)
Q Consensus 352 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 431 (779)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ .++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 34445555555555554444455555555555555555543332 5555555555555555553322 24566666
Q ss_pred ccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccc-cCCCCCCEEEccCCcCccc
Q 046050 432 LSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQL-CLLKQLQLIDLSHNNLSGT 510 (779)
Q Consensus 432 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~ 510 (779)
+++|++++..+..+ ..|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++.
T Consensus 106 l~~n~l~~~~~~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 106 AANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CCSSCCSEEEECCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCCccCCcCcccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 66666655544432 227788888888887767778888899999999999987777666 4688999999999988743
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050 511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL 590 (779)
Q Consensus 511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 590 (779)
|... .+++|++|++++|++
T Consensus 185 -~~~~------------------------------------------------------------~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 185 -KGQV------------------------------------------------------------VFAKLKTLDLSSNKL 203 (317)
T ss_dssp -ECCC------------------------------------------------------------CCTTCCEEECCSSCC
T ss_pred -cccc------------------------------------------------------------ccccCCEEECCCCcC
Confidence 2111 146788899999999
Q ss_pred CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc-CCCchhhhhcccCcEEEccCC-cCcccCCC
Q 046050 591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ-GKIPTQLVELYALAIFSVAHN-NLSGKVPD 668 (779)
Q Consensus 591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~N-~l~~~~p~ 668 (779)
++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++++| .++|..|.
T Consensus 204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 84 5556888999999999999998 57888889999999999999998 778888889999999999844 56666554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1e-26 Score=256.03 Aligned_cols=248 Identities=21% Similarity=0.201 Sum_probs=217.0
Q ss_pred CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050 331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 410 (779)
....++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888888 6776654 689999999999998888999999999999999999998888999999999999999
Q ss_pred CccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccC-ccccCcCchhhhcCCCCcEEEccCCcCccc
Q 046050 411 VNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSY-NRFSGRIPNWIDKLSHLSYLILANNNLEGE 486 (779)
Q Consensus 411 ~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 486 (779)
+|++++..+..+. +++|++|++++|.++..++..|... |+.|++++ |.+....+..+.++++|++|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999988887777 8899999999999998888777766 99999998 455544556789999999999999999854
Q ss_pred CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050 487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK 566 (779)
Q Consensus 487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (779)
| .+..+++|+.|++++|++++..|..+ .
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~------------------------------------------- 239 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSF-------H------------------------------------------- 239 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGG-------T-------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccc-------c-------------------------------------------
Confidence 4 47889999999999999997666655 1
Q ss_pred CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC
Q 046050 567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642 (779)
Q Consensus 567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 642 (779)
.+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...-
T Consensus 240 ---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 240 ---------GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp ---------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred ---------CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 1568999999999999888999999999999999999999888888999999999999999987543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=252.98 Aligned_cols=249 Identities=26% Similarity=0.208 Sum_probs=183.6
Q ss_pred ccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387 (779)
Q Consensus 308 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 387 (779)
...++.++..++ .+|..+ .++++.|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666666 334433 24667777777777665566666777777777777777665556666677777777777
Q ss_pred CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchh
Q 046050 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW 466 (779)
Q Consensus 388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 466 (779)
|++++..+..|..+++|+.|++++|+++...+..+. +++|++|++++| +.+....+..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~---------------------~~l~~i~~~~ 180 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL---------------------KRLSYISEGA 180 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC---------------------TTCCEECTTT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC---------------------CCcceeCcch
Confidence 766655555666666677777666666655554444 445555554442 2333334457
Q ss_pred hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccc
Q 046050 467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA 546 (779)
Q Consensus 467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (779)
+.++++|++|++++|+++. +| .+..+++|+.|+|++|++++..|..+ .
T Consensus 181 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~----------------------- 228 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSF-------Q----------------------- 228 (440)
T ss_dssp TTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTT-------T-----------------------
T ss_pred hhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhh-------c-----------------------
Confidence 8889999999999999984 44 47899999999999999996656554 1
Q ss_pred cCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCC
Q 046050 547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLS 626 (779)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 626 (779)
.+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..++
T Consensus 229 -----------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 229 -----------------------------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -----------------------------TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -----------------------------cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 157899999999999998899999999999999999999988888999999
Q ss_pred CCCEEECCCCcCcCC
Q 046050 627 QIESLDLSYNMLQGK 641 (779)
Q Consensus 627 ~L~~L~Ls~N~l~~~ 641 (779)
+|+.|+|++|++...
T Consensus 280 ~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 280 HLERIHLHHNPWNCN 294 (440)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEcCCCCccCC
Confidence 999999999998753
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-26 Score=241.12 Aligned_cols=235 Identities=21% Similarity=0.283 Sum_probs=182.0
Q ss_pred CCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEE
Q 046050 329 LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLD 408 (779)
Q Consensus 329 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 408 (779)
.++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888877 66777777888888888888887 67777888888888888888887 6677788888888888
Q ss_pred ccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc
Q 046050 409 LEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP 488 (779)
Q Consensus 409 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 488 (779)
+++|++.+.+|..+.. . ..+..+.++++|++|++++|+++ .+|
T Consensus 157 L~~n~~~~~~p~~~~~---------------------------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 157 IRACPELTELPEPLAS---------------------------T---------DASGEHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp EEEETTCCCCCSCSEE---------------------------E---------C-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred CCCCCCccccChhHhh---------------------------c---------cchhhhccCCCCCEEECcCCCcC-cch
Confidence 8887776666653221 0 11123556777788888888777 666
Q ss_pred ccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCc
Q 046050 489 VQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNT 568 (779)
Q Consensus 489 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (779)
..+..+++|++|++++|+++ .+|+.+
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~-~l~~~l----------------------------------------------------- 225 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLS-ALGPAI----------------------------------------------------- 225 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCC-CCCGGG-----------------------------------------------------
T ss_pred HhhcCCCCCCEEEccCCCCC-cCchhh-----------------------------------------------------
Confidence 77777788888888888877 355444
Q ss_pred eeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhh
Q 046050 569 SYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVE 648 (779)
Q Consensus 569 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 648 (779)
..+++|+.|++++|++.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|++|++.+.+|..+.+
T Consensus 226 ------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 226 ------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp ------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred ------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 11456778888888888788888888999999999999988899988999999999999999999999999999
Q ss_pred cccCcEEEccCCcCc
Q 046050 649 LYALAIFSVAHNNLS 663 (779)
Q Consensus 649 l~~L~~L~ls~N~l~ 663 (779)
+++|+.+++..|.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 999999998877665
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.5e-26 Score=234.57 Aligned_cols=233 Identities=23% Similarity=0.195 Sum_probs=129.1
Q ss_pred CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc-CcccCCcCcC-CCcccEEEc
Q 046050 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN-ISGSLPSCFS-SWLLTQVHL 432 (779)
Q Consensus 355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~L~~L~l 432 (779)
++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+. +++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~---- 108 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH---- 108 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC----
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC----
Confidence 44444444444443333344444444444444444443334444444444444444443 3333233222 22233
Q ss_pred cCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCC
Q 046050 433 SRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512 (779)
Q Consensus 433 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 512 (779)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 109 ------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 109 ------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp ------------------EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred ------------------EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 23333333333344556666777777777777776666667777777777777777763222
Q ss_pred chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC
Q 046050 513 SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG 592 (779)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 592 (779)
..+ . .++.|+.|++++|++++
T Consensus 171 ~~~-------~----------------------------------------------------~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 171 RAF-------R----------------------------------------------------GLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTT-------T----------------------------------------------------TCTTCCEEECCSSCCCE
T ss_pred HHh-------c----------------------------------------------------CccccCEEECCCCcccc
Confidence 112 0 03455566666666665
Q ss_pred CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCC
Q 046050 593 EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDR 669 (779)
Q Consensus 593 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 669 (779)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.. .....++.+..+.+.+.|..|..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 56666777777778888888777666667777778888888888777544432 12234455556777777777764
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-26 Score=238.20 Aligned_cols=250 Identities=22% Similarity=0.190 Sum_probs=193.4
Q ss_pred CEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCC
Q 046050 357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRN 435 (779)
Q Consensus 357 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n 435 (779)
++++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+. +++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--------- 81 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL--------- 81 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC---------
Confidence 56777777776 344433 45777777777777765556677777777777777777766555444 444
Q ss_pred cCcccchhhHhhcceEEEccCcc-ccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCch
Q 046050 436 KIEGQLEDVFGDILVTLDLSYNR-FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC 514 (779)
Q Consensus 436 ~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 514 (779)
|++|++++|+ ++...+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus 82 -------------L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 82 -------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp -------------CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -------------CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 4555555554 55455777889999999999999999888999999999999999999998433332
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCC
Q 046050 515 LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI 594 (779)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 594 (779)
+ ..+++|+.|++++|++++..
T Consensus 149 ~-----------------------------------------------------------~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 149 F-----------------------------------------------------------RDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp T-----------------------------------------------------------TTCTTCCEEECCSSCCCEEC
T ss_pred h-----------------------------------------------------------ccCCCccEEECCCCcccccC
Confidence 3 11567999999999999777
Q ss_pred CccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCC
Q 046050 595 PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFA 674 (779)
Q Consensus 595 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 674 (779)
+..+..+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..+..+++|++|++++|++.|.++.. ..+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 778999999999999999999988999999999999999999999888888999999999999999999888752 2223
Q ss_pred CCCCCcccCCCCCCCCC
Q 046050 675 TFTENSYDGNSLLCGQP 691 (779)
Q Consensus 675 ~l~~~~~~~N~~lc~~~ 691 (779)
+++......+...|..|
T Consensus 249 ~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHCCSEECCCBEEES
T ss_pred HHHhcccccCccccCCc
Confidence 44444555666666543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.8e-25 Score=250.29 Aligned_cols=263 Identities=24% Similarity=0.285 Sum_probs=142.3
Q ss_pred CCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEE
Q 046050 280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL 359 (779)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 359 (779)
+++.|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~-----~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP-----AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC-----TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcC-ccChhhC-----CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence 4667777777666 4444332 256666666666663 333 3556666666666665 3333 44566666
Q ss_pred EccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcc
Q 046050 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG 439 (779)
Q Consensus 360 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 439 (779)
++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++.. . ...+
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~--~~~~------------- 162 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A--LPSE------------- 162 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C--CCTT-------------
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C--ccCC-------------
Confidence 666666653 222 34556666666666553 3321 355556666655555322 1 1233
Q ss_pred cchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhc
Q 046050 440 QLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTA 519 (779)
Q Consensus 440 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 519 (779)
|+.|++++|.+++ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++ .+|..
T Consensus 163 ---------L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~----- 219 (622)
T 3g06_A 163 ---------LCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL----- 219 (622)
T ss_dssp ---------CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC-----
T ss_pred ---------CCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC-----
Confidence 4455555555543 23 234556666666666553 222 1345666666666655 22221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCcccc
Q 046050 520 LGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIG 599 (779)
Q Consensus 520 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 599 (779)
+++|+.|++++|++++ +| .
T Consensus 220 ---------------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 220 ---------------------------------------------------------PSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCSC-CC---C
T ss_pred ---------------------------------------------------------CCCCCEEEccCCccCc-CC---C
Confidence 2345566666666663 44 3
Q ss_pred CcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCC
Q 046050 600 YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDR 669 (779)
Q Consensus 600 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 669 (779)
.+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 3456666666666666 3443 4556666666666666 55666666666666666666666655553
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.4e-26 Score=237.14 Aligned_cols=233 Identities=19% Similarity=0.250 Sum_probs=169.0
Q ss_pred cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386 (779)
Q Consensus 307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 386 (779)
+++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5667777777776 55666777888888888888888 77777888888888888888888 677788888888888888
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCch
Q 046050 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465 (779)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 465 (779)
+|++.+.+|..+.. .++ ++.+. +++ |++|++++|+++ .+|.
T Consensus 159 ~n~~~~~~p~~~~~------~~~---------~~~~~~l~~----------------------L~~L~L~~n~l~-~lp~ 200 (328)
T 4fcg_A 159 ACPELTELPEPLAS------TDA---------SGEHQGLVN----------------------LQSLRLEWTGIR-SLPA 200 (328)
T ss_dssp EETTCCCCCSCSEE------EC----------CCCEEESTT----------------------CCEEEEEEECCC-CCCG
T ss_pred CCCCccccChhHhh------ccc---------hhhhccCCC----------------------CCEEECcCCCcC-cchH
Confidence 88777777765543 000 01111 222 333334444444 4555
Q ss_pred hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050 466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE 545 (779)
Q Consensus 466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (779)
.+..+++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..+ +.
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-------~~--------------------- 251 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF-------GG--------------------- 251 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT-------TC---------------------
T ss_pred hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh-------cC---------------------
Confidence 66677777777777777774 44457777777777777777776666554 11
Q ss_pred ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050 546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 625 (779)
+++|+.|++++|++.+.+|..+..+++|+.|+|++|++.+.+|+.++++
T Consensus 252 -------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 252 -------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp -------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred -------------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 4567778888877777888888889999999999999999999999999
Q ss_pred CCCCEEECCCCcCcC
Q 046050 626 SQIESLDLSYNMLQG 640 (779)
Q Consensus 626 ~~L~~L~Ls~N~l~~ 640 (779)
++|+.+++..|.+..
T Consensus 301 ~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 301 PANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCEEECCGGGSCC
T ss_pred cCceEEeCCHHHHHH
Confidence 999999998887763
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.8e-27 Score=260.60 Aligned_cols=235 Identities=20% Similarity=0.141 Sum_probs=131.0
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEcc
Q 046050 354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLS 433 (779)
Q Consensus 354 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 433 (779)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|+.|++++|.+++..+. ++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 356666666666665555566666666666666666654443 56666666666666666543322 455566666
Q ss_pred CCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEccCCcCcccCC
Q 046050 434 RNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLSHNNLSGTIP 512 (779)
Q Consensus 434 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p 512 (779)
+|.+++.++..+ ..|+.|++++|.+++..|..+..+++|+.|+|++|++++..|..+. .+++|+.|+|++|.+++. |
T Consensus 108 ~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 108 NNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 655555444322 2256666666666655555666666666666666666665555554 566666666666666532 1
Q ss_pred chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC
Q 046050 513 SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG 592 (779)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 592 (779)
... .++.|+.|+|++|.+++
T Consensus 186 ~~~------------------------------------------------------------~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 186 GQV------------------------------------------------------------VFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CCC------------------------------------------------------------CCTTCCEEECCSSCCCE
T ss_pred ccc------------------------------------------------------------cCCCCCEEECCCCCCCC
Confidence 100 03445555555555553
Q ss_pred CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc-CCCchhhhhcccCcEEEcc
Q 046050 593 EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ-GKIPTQLVELYALAIFSVA 658 (779)
Q Consensus 593 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 658 (779)
+|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 206 -~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 206 -MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 23335555555555555555553 4444555555555555555555 3444455555555555443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=8.9e-28 Score=251.08 Aligned_cols=264 Identities=19% Similarity=0.140 Sum_probs=217.4
Q ss_pred CCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCC
Q 046050 356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRN 435 (779)
Q Consensus 356 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 435 (779)
++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+ ...+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4556677777765555666778899999999999998888999999999999999999997665 444889999999999
Q ss_pred cCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050 436 KIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515 (779)
Q Consensus 436 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 515 (779)
.+++.++. ..|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..|..+
T Consensus 91 ~l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 91 YVQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 99987643 4499999999999976544 46889999999999998888899999999999999999986555544
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC
Q 046050 516 YKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP 595 (779)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 595 (779)
.. .++.|++|++++|++++. |
T Consensus 165 ~~----------------------------------------------------------~l~~L~~L~L~~N~l~~~-~ 185 (317)
T 3o53_A 165 AA----------------------------------------------------------SSDTLEHLNLQYNFIYDV-K 185 (317)
T ss_dssp GG----------------------------------------------------------GTTTCCEEECTTSCCCEE-E
T ss_pred hh----------------------------------------------------------ccCcCCEEECCCCcCccc-c
Confidence 11 146799999999999954 3
Q ss_pred ccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc-ccCCCCCCcCC
Q 046050 596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS-GKVPDRVGQFA 674 (779)
Q Consensus 596 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~~~~~~ 674 (779)
....+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..+.
T Consensus 186 -~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 186 -GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp -CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred -cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 33459999999999999995 5555999999999999999999 57888999999999999999999 55666556666
Q ss_pred CCCCCcccCCCCCC
Q 046050 675 TFTENSYDGNSLLC 688 (779)
Q Consensus 675 ~l~~~~~~~N~~lc 688 (779)
.++.+...+++.+.
T Consensus 263 ~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 263 RVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cceEEECCCchhcc
Confidence 66666666544433
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.9e-27 Score=257.23 Aligned_cols=253 Identities=21% Similarity=0.179 Sum_probs=210.5
Q ss_pred cchhhhCC----CCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhH
Q 046050 370 IPKWLGNL----SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVF 445 (779)
Q Consensus 370 ~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 445 (779)
+|..+..+ ++|++|++++|.+++..|..|..+++|+.|++++|.+++..| ...+++|+.|++++|.+++.++.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-- 98 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG-- 98 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC--
Confidence 34445444 489999999999999888999999999999999999997776 44489999999999999987754
Q ss_pred hhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCC
Q 046050 446 GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNY 525 (779)
Q Consensus 446 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~ 525 (779)
..|+.|++++|.+++..+. .+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 99 -~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------- 166 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------- 166 (487)
T ss_dssp -TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------
T ss_pred -CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------
Confidence 4599999999999976654 4689999999999999998999999999999999999999877766521
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCc
Q 046050 526 DSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIR 605 (779)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~ 605 (779)
.++.|+.|+|++|.+++. | ....+++|+
T Consensus 167 --------------------------------------------------~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 194 (487)
T 3oja_A 167 --------------------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLK 194 (487)
T ss_dssp --------------------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCC
T ss_pred --------------------------------------------------hCCcccEEecCCCccccc-c-ccccCCCCC
Confidence 157899999999999965 3 344699999
Q ss_pred EEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc-ccCCCCCCcCCCCCCCccc--
Q 046050 606 ALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS-GKVPDRVGQFATFTENSYD-- 682 (779)
Q Consensus 606 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~~~~~-- 682 (779)
.|+|++|.+++..| .+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|..+..+..+..+...
T Consensus 195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 99999999996544 59999999999999999995 7778999999999999999998 4555545555555555554
Q ss_pred -----CCCCCCCCC
Q 046050 683 -----GNSLLCGQP 691 (779)
Q Consensus 683 -----~N~~lc~~~ 691 (779)
+|+..|.++
T Consensus 273 ~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 273 KKLTGQNEEECTVP 286 (487)
T ss_dssp HHHTSSSSCCCSST
T ss_pred ccccCCCcccccCC
Confidence 778777664
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.8e-27 Score=246.63 Aligned_cols=252 Identities=22% Similarity=0.234 Sum_probs=166.2
Q ss_pred CCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccC-CCcchhhh-------CCCCCceEEccCCCCCCCcchhh-
Q 046050 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHIS-GKIPKWLG-------NLSNLVDIIMPNNHLEGPIPANL- 398 (779)
Q Consensus 328 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~- 398 (779)
..++|+.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555666666655 344433322 555555555552 23333333 44555555555555554444443
Q ss_pred -cCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEE
Q 046050 399 -CKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYL 476 (779)
Q Consensus 399 -~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 476 (779)
..+++|++|++++|++++. |..+. +.. .....|++|++++|++++..+..+..+++|++|
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-----------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQ-----------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHT-----------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHH-----------------hhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence 4445555555555554433 22111 100 000237788888888887777888899999999
Q ss_pred EccCCcCccc--Ccccc--cCCCCCCEEEccCCcCcc--cCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 046050 477 ILANNNLEGE--VPVQL--CLLKQLQLIDLSHNNLSG--TIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPS 550 (779)
Q Consensus 477 ~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (779)
++++|++.+. .+..+ ..+++|++|++++|++++ .++..++.
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------------------------- 225 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--------------------------------- 225 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH---------------------------------
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh---------------------------------
Confidence 9999998765 23334 788999999999999873 12222211
Q ss_pred CCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC-ccccCcccCcEEEcCCCcCCccCchhhhCCCCCC
Q 046050 551 GSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP-FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE 629 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 629 (779)
.++.|+.||+++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|+
T Consensus 226 -------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 226 -------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp -------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred -------------------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 14678899999999998775 56677899999999999998 7777766 8999
Q ss_pred EEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050 630 SLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG 664 (779)
Q Consensus 630 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 664 (779)
.|||++|++++. |. +..+++|++|++++|++++
T Consensus 278 ~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999866 66 8899999999999999875
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1e-24 Score=245.62 Aligned_cols=270 Identities=24% Similarity=0.316 Sum_probs=211.8
Q ss_pred CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCC
Q 046050 254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV 333 (779)
Q Consensus 254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 333 (779)
.+++.|++++|.++ .+|..++ ++|+.|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA------LPPELRTLEVSGNQLTS-LPV---LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC------CCTTCCEEEECSCCCSC-CCC---CCTTCC
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC------cCCCCCEEEcCCCcCCc-CCC---CCCCCC
Confidence 35899999999999 8998765 69999999999998 4554 23589999999999985 444 689999
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc
Q 046050 334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN 413 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 413 (779)
+|++++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.
T Consensus 105 ~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 105 ELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp EEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC
Confidence 99999999984 454 56889999999999995 5543 5899999999999985 343 45789999999999
Q ss_pred CcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccC
Q 046050 414 ISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL 493 (779)
Q Consensus 414 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 493 (779)
+++. | ..+++|+.|++++|.++++ |. .+++|+.|++++|.++. +|. .
T Consensus 173 l~~l-~--~~~~~L~~L~Ls~N~l~~l-----------------------~~---~~~~L~~L~L~~N~l~~-l~~---~ 219 (622)
T 3g06_A 173 LTSL-P--MLPSGLQELSVSDNQLASL-----------------------PT---LPSELYKLWAYNNRLTS-LPA---L 219 (622)
T ss_dssp CSCC-C--CCCTTCCEEECCSSCCSCC-----------------------CC---CCTTCCEEECCSSCCSS-CCC---C
T ss_pred CCCC-c--ccCCCCcEEECCCCCCCCC-----------------------CC---ccchhhEEECcCCcccc-cCC---C
Confidence 9864 3 2245566666655555432 22 23677788888887773 333 2
Q ss_pred CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeec
Q 046050 494 LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQ 573 (779)
Q Consensus 494 l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (779)
+++|+.|++++|++++ +|..
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp~~----------------------------------------------------------- 239 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LPVL----------------------------------------------------------- 239 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCC-----------------------------------------------------------
T ss_pred CCCCCEEEccCCccCc-CCCC-----------------------------------------------------------
Confidence 4678888888888873 4421
Q ss_pred ccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhccc
Q 046050 574 GRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYA 651 (779)
Q Consensus 574 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 651 (779)
+++|+.|++++|+|+ .+|. .+++|+.|+|++|+++ .+|..|.++++|+.|+|++|++++.+|..+..++.
T Consensus 240 ---l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 240 ---PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp ---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred ---CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 356888899999888 5665 5788999999999999 77889999999999999999999999998887763
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2e-27 Score=272.14 Aligned_cols=378 Identities=15% Similarity=0.055 Sum_probs=204.4
Q ss_pred hcCCCCCEEECcCCcccccCCCCCC-CCCCccEEEccCC-CCCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-cccc
Q 046050 227 ENNKELETLLLANNSLSGFFQMPVN-PLKQLTTIDVSKN-FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTM 303 (779)
Q Consensus 227 ~~~~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~ 303 (779)
..+++|++|++++|.+++.....+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+ ....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4456666666666665543333332 3566666666666 33311122233235666666666666554444444 3333
Q ss_pred CCccccEEEccCCc--CCcc-ccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCc-------cCCCcchh
Q 046050 304 GCFSLQILALSNNS--LQGH-IFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH-------ISGKIPKW 373 (779)
Q Consensus 304 ~~~~L~~L~ls~n~--l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~ 373 (779)
.+++|++|++++|. +... +......+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 55566666666665 2211 11112345667777776662222345555566666666644332 221 3335
Q ss_pred hhCCCCCceE-EccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc-Cc-CCCcccEEEccCCcCcccchhhHh---h
Q 046050 374 LGNLSNLVDI-IMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CF-SSWLLTQVHLSRNKIEGQLEDVFG---D 447 (779)
Q Consensus 374 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~---~ 447 (779)
+.++++|+.+ .+.+... +.++..+..+++|+.|++++|.+++.... .. .+++|++|++++| +.......+. .
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 6666666666 3332221 13344444566677777776665432211 11 2566777777666 3322222221 1
Q ss_pred cceEEEcc---------CccccCcCchhh-hcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEcc--C----CcCccc
Q 046050 448 ILVTLDLS---------YNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLS--H----NNLSGT 510 (779)
Q Consensus 448 ~L~~L~L~---------~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~ 510 (779)
.|+.|+++ .+.+++.....+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++ + +.++ .
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-L 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-C
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-C
Confidence 26777663 234443222222 3477788887777777765555444 47778888887 3 3443 1
Q ss_pred CCch-hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCc
Q 046050 511 IPSC-LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNK 589 (779)
Q Consensus 511 ~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 589 (779)
.|.. -+.. ....+++|+.|++++ .
T Consensus 418 ~~~~~~~~~------------------------------------------------------l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 418 EPLDIGFGA------------------------------------------------------IVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp CCTHHHHHH------------------------------------------------------HHHHCTTCCEEECCS-S
T ss_pred CchhhHHHH------------------------------------------------------HHhhCCCccEEeecC-c
Confidence 1110 0000 001145677788866 5
Q ss_pred cCCCCCccccC-cccCcEEEcCCCcCCccCchhh-hCCCCCCEEECCCCcCcCCCch-hhhhcccCcEEEccCCcCc
Q 046050 590 LTGEIPFQIGY-LNMIRALNLSHNNLMGTIPSTF-SHLSQIESLDLSYNMLQGKIPT-QLVELYALAIFSVAHNNLS 663 (779)
Q Consensus 590 l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 663 (779)
+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 66544445544 7778888888888876555555 6678888888888888644443 3344778888888888774
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5e-26 Score=237.20 Aligned_cols=130 Identities=21% Similarity=0.186 Sum_probs=77.6
Q ss_pred CCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCC-cccccccc-------CCCCCCEEEccCCcCccccCcc
Q 046050 278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ-GHIFSRSF-------NLTNLVTLQLDANQFTGGIPEN 349 (779)
Q Consensus 278 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~ 349 (779)
.++|+.|++++|.+ .+|..+.. .|+.|++++|.++ ..++..+. ++++|++|++++|++++..|..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD-----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH-----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred CCCceeEeeccccc--ccHHHHHH-----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34666777777776 45544321 2666666666663 33344333 4666667777766666666655
Q ss_pred c--cCCCCCCEEEccCCccCCCcchhhhCC-----CCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050 350 L--LNCSLLGGLYLSDNHISGKIPKWLGNL-----SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS 415 (779)
Q Consensus 350 ~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 415 (779)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..|..+++|++|++++|++.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 4 5666666666666666654 5555554 56666666666666555556666666666666666544
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2e-27 Score=272.15 Aligned_cols=409 Identities=15% Similarity=0.121 Sum_probs=232.9
Q ss_pred hhhhCCCCCCcEEeCCCCcc----c-----------------cCCCCCccEEEccccccccccchhhc-CCCCcCEEECC
Q 046050 8 QSLWTPFPNLETLELRDYHL----E-----------------LLNFTNLEVLILDGSALHIRFLQSIA-VLTSVKHLSMR 65 (779)
Q Consensus 8 ~~~~~~~~~L~~L~Ls~~~~----~-----------------~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~ 65 (779)
..++..|++|++|+|+++.. . ...+++|++|++++|.+++..+..+. .+++|++|+++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 44567778888888887652 1 11355666666666666555444443 45666666666
Q ss_pred CC-CCcccCCcccccCCCCCcEEEccCcccccccChhc----cCCCCCCEEeCCCCcCcccCCchh----hcCCCCCCEE
Q 046050 66 NC-YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCL----VNMTSLRILDIASNQITGNISSSP----LRYLTSLEEL 136 (779)
Q Consensus 66 ~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~Ls~n~i~~~i~~~~----~~~l~~L~~L 136 (779)
+| .+........+..+++|++|++++|.+++..+..+ ..+++|++|++++|. . .+.... +..+++|++|
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEE
Confidence 66 22211011122346666666666666554333322 245566666666665 1 222211 2334666666
Q ss_pred Ecccc-cccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEE-EccC
Q 046050 137 RVSNN-QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYV-DLSH 214 (779)
Q Consensus 137 ~Ls~n-~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L-~Ls~ 214 (779)
++++| .+++ + ...+..+++|+.|+++.+.. ++..+.+. .++..+.++++|+.| .+.+
T Consensus 217 ~L~~~~~~~~-l-~~~~~~~~~L~~L~l~~~~~------------------~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 217 KLNRAVPLEK-L-ATLLQRAPQLEELGTGGYTA------------------EVRPDVYS-GLSVALSGCKELRCLSGFWD 275 (594)
T ss_dssp ECCTTSCHHH-H-HHHHHHCTTCSEEECSBCCC------------------CCCHHHHH-HHHHHHHTCTTCCEEECCBT
T ss_pred ecCCCCcHHH-H-HHHHhcCCcceEcccccccC------------------ccchhhHH-HHHHHHhcCCCcccccCCcc
Confidence 66665 2221 1 12233444444444333211 01111122 134466777777777 3443
Q ss_pred CCCCCcCchhhhhcCCCCCEEECcCCcccccCCC-CCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccC-----
Q 046050 215 MNLRGEFPNWLLENNKELETLLLANNSLSGFFQM-PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR----- 288 (779)
Q Consensus 215 n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~----- 288 (779)
.... .++.. +..+++|++|++++|.+++.... .+..+++|++|++++| +.+.....+...+++|++|++.+
T Consensus 276 ~~~~-~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 276 AVPA-YLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp CCGG-GGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred cchh-hHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 3222 34433 24567788888888775542211 2346778888888877 43222223333477888888743
Q ss_pred ----CcCCcccCcccccccCCccccEEEccCCcCCcccccccc-CCCCCCEEEcc--C----CcCccc-----cCccccC
Q 046050 289 ----NVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLD--A----NQFTGG-----IPENLLN 352 (779)
Q Consensus 289 ----n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~ 352 (779)
+.+++.... ....++++|+.|.++.+.+++.....+. .+++|+.|+++ + +.+++. ++..+..
T Consensus 353 ~~~~~~l~~~~l~--~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 353 MEPNVALTEQGLV--SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp SSCSSCCCHHHHH--HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred cccCCCCCHHHHH--HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 233321111 1223456888888888888765555554 57888888888 3 445421 1122567
Q ss_pred CCCCCEEEccCCccCCCcchhhhC-CCCCceEEccCCCCCCCcchhh-cCCCCCCEEEccCccCcccCCc-CcC-CCccc
Q 046050 353 CSLLGGLYLSDNHISGKIPKWLGN-LSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPS-CFS-SWLLT 428 (779)
Q Consensus 353 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~-~~~L~ 428 (779)
+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ... +++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 78899999977 666555555555 8889999999998876555555 6688999999999988644332 222 67899
Q ss_pred EEEccCCcCcccchhhH
Q 046050 429 QVHLSRNKIEGQLEDVF 445 (779)
Q Consensus 429 ~L~l~~n~l~~~~~~~~ 445 (779)
.|++++|.++......+
T Consensus 510 ~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLL 526 (594)
T ss_dssp EEEEESSCCBHHHHHHH
T ss_pred EEeeeCCCCCHHHHHHH
Confidence 99999998855444444
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.3e-24 Score=216.90 Aligned_cols=226 Identities=22% Similarity=0.206 Sum_probs=151.6
Q ss_pred EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCc
Q 046050 358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNK 436 (779)
Q Consensus 358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 436 (779)
.++..+..+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..+..+. +++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444555554 3444332 4677777777777755555677777777777777777665554444 4455555444444
Q ss_pred CcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc-CCchh
Q 046050 437 IEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT-IPSCL 515 (779)
Q Consensus 437 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~ 515 (779)
+++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+
T Consensus 88 ----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 88 ----------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp ----------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ----------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh
Confidence 4444455566677777777777777766665677777777777777777642 34444
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC
Q 046050 516 YKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP 595 (779)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 595 (779)
..+++|++|++++|++++..+
T Consensus 146 -----------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 146 -----------------------------------------------------------SNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp -----------------------------------------------------------GGCTTCCEEECCSSCCCEECG
T ss_pred -----------------------------------------------------------ccCCCCCEEECCCCCCCcCCH
Confidence 114567777777777776666
Q ss_pred ccccCcccCc----EEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 596 FQIGYLNMIR----ALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 596 ~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
..+..+++|+ .|++++|++++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 6666666666 788888888865555544 44788888888888877666778888888888888888888875
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=212.63 Aligned_cols=204 Identities=20% Similarity=0.218 Sum_probs=122.7
Q ss_pred CCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccC
Q 046050 403 FLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480 (779)
Q Consensus 403 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 480 (779)
..+.++++++.++.+ |..+ .+.+++|++++|++++.++..+... |++|++++|.++...+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCcc-CCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 467778887777743 3322 2456777777777666655555443 66666666666655445556666666666666
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccce
Q 046050 481 NNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEES 560 (779)
Q Consensus 481 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (779)
|++++..+..|..+++|++|++++|++++..|..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------------------- 129 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--------------------------------------------- 129 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---------------------------------------------
Confidence 66665555556666666666666666653322222
Q ss_pred EEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC
Q 046050 561 VEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG 640 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 640 (779)
..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++
T Consensus 130 --------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 130 --------------DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp --------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred --------------CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 013456666666666665444556666666666666666665555556666666666666666665
Q ss_pred CCchhhhhcccCcEEEccCCcCcccCC
Q 046050 641 KIPTQLVELYALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 641 ~~p~~l~~l~~L~~L~ls~N~l~~~~p 667 (779)
..+..+..+++|+.|++++|++.|.++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCHHHhccccCCCEEEecCCCeeCCCc
Confidence 555556666666666666666666554
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.1e-23 Score=214.26 Aligned_cols=106 Identities=23% Similarity=0.225 Sum_probs=54.8
Q ss_pred hcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcE
Q 046050 398 LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSY 475 (779)
Q Consensus 398 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~ 475 (779)
+.++++++.++++++.++..++... +.++.|++++|.+++..+..+... |+.|++++|.+++..+. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 4567778888888888775443322 456666666666655544444333 44455555444432211 34444444
Q ss_pred EEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050 476 LILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 476 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCc
Confidence 444444444 33334444444444444444444
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.8e-23 Score=214.00 Aligned_cols=205 Identities=23% Similarity=0.215 Sum_probs=164.4
Q ss_pred ccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccC
Q 046050 427 LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSH 504 (779)
Q Consensus 427 L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 504 (779)
+++|++++|.+++..+..+... |++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 4444444444444333333322 56666666666656667788999999999999999988889999999999999999
Q ss_pred CcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEe
Q 046050 505 NNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLD 584 (779)
Q Consensus 505 N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 584 (779)
|++++..+..+ ..++.|++|+
T Consensus 110 n~l~~~~~~~~-----------------------------------------------------------~~l~~L~~L~ 130 (276)
T 2z62_A 110 TNLASLENFPI-----------------------------------------------------------GHLKTLKELN 130 (276)
T ss_dssp SCCCCSTTCCC-----------------------------------------------------------TTCTTCCEEE
T ss_pred CCccccCchhc-----------------------------------------------------------ccCCCCCEEE
Confidence 99985433222 1157899999
Q ss_pred ccCCccCCC-CCccccCcccCcEEEcCCCcCCccCchhhhCCCCCC----EEECCCCcCcCCCchhhhhcccCcEEEccC
Q 046050 585 LSCNKLTGE-IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE----SLDLSYNMLQGKIPTQLVELYALAIFSVAH 659 (779)
Q Consensus 585 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 659 (779)
+++|++++. +|..++.+++|+.|++++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~ 209 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDT 209 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCS
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCC
Confidence 999999974 699999999999999999999988888888888887 999999999976666554 45899999999
Q ss_pred CcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 660 NNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 660 N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
|++++..+..+..+..++.+.+.+||+.|+|+
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99998777767889999999999999999986
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.8e-23 Score=208.31 Aligned_cols=206 Identities=21% Similarity=0.216 Sum_probs=168.7
Q ss_pred cccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050 426 LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN 505 (779)
Q Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 505 (779)
..+.++++++.++.++. .+...++.|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 47788999998887554 33345889999999998777778888999999999999998777777888899999999999
Q ss_pred cCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEec
Q 046050 506 NLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDL 585 (779)
Q Consensus 506 ~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 585 (779)
++++ +|...+. .+++|++|++
T Consensus 96 ~l~~-~~~~~~~----------------------------------------------------------~l~~L~~L~l 116 (270)
T 2o6q_A 96 KLQA-LPIGVFD----------------------------------------------------------QLVNLAELRL 116 (270)
T ss_dssp CCCC-CCTTTTT----------------------------------------------------------TCSSCCEEEC
T ss_pred cCCc-CCHhHcc----------------------------------------------------------cccCCCEEEC
Confidence 8874 3332211 1467888999
Q ss_pred cCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCccc
Q 046050 586 SCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGK 665 (779)
Q Consensus 586 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 665 (779)
++|++++..+..|+.+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999987778888899999999999999877777788899999999999999877777788889999999999999876
Q ss_pred CCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 666 VPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 666 ~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
.+..+..+..++.+.+.+||+.|+|.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCCc
Confidence 66667778888888899999998875
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2e-22 Score=207.00 Aligned_cols=130 Identities=25% Similarity=0.224 Sum_probs=58.9
Q ss_pred hCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEE
Q 046050 375 GNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLD 453 (779)
Q Consensus 375 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 453 (779)
.+++++++++++++.++ .+|..+. +.++.|++++|.+++..+..+. +++|+.|++++|.+++..+......|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 34444555555555444 2332221 3445555555555444443333 444555555555544443321111255555
Q ss_pred ccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050 454 LSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 454 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
+++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 5555544 33444444455555555555554444444444444444444444443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=207.55 Aligned_cols=225 Identities=22% Similarity=0.208 Sum_probs=164.5
Q ss_pred CCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCC
Q 046050 356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRN 435 (779)
Q Consensus 356 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 435 (779)
+..+++..+.+.+. .....+++|+.|++++|.+.. + ..+..+++|+.|++++|.+++. +....+++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~--------- 86 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTN--------- 86 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTT---------
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCC---------
Confidence 33444555554432 224456677777777776652 2 2356667777777777766642 22222333
Q ss_pred cCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050 436 KIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515 (779)
Q Consensus 436 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 515 (779)
|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus 87 -------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 87 -------------LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp -------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred -------------CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 5566666666665666667888889999999999887777778888999999999998884333322
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC
Q 046050 516 YKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP 595 (779)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 595 (779)
..+++|+.|++++|++++..+
T Consensus 154 -----------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 154 -----------------------------------------------------------DKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp -----------------------------------------------------------TTCTTCCEEECCSSCCCCCCT
T ss_pred -----------------------------------------------------------ccCccCCEEECCCCCcCccCH
Confidence 114678889999999997777
Q ss_pred ccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcC
Q 046050 596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQF 673 (779)
Q Consensus 596 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 673 (779)
..++.+++|+.|++++|++++..|..+..+++|+.|++++|++.+.. +.|++++++.|.++|.+|..++.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCccccc
Confidence 77899999999999999999888888999999999999999998654 468899999999999999865543
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.7e-23 Score=221.34 Aligned_cols=265 Identities=19% Similarity=0.180 Sum_probs=137.5
Q ss_pred EEccCCcCCccccccccCCCCCCEEEccCCcCccccC----ccccCCC-CCCEEEccCCccCCCcchhhhCC-----CCC
Q 046050 311 LALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIP----ENLLNCS-LLGGLYLSDNHISGKIPKWLGNL-----SNL 380 (779)
Q Consensus 311 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L 380 (779)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555544444446666666666554433 4445555 56666666666655444444443 556
Q ss_pred ceEEccCCCCCCCcchhh----cCC-CCCCEEEccCccCcccCCcCcC------CCcccEEEccCCcCcccchhhHhhcc
Q 046050 381 VDIIMPNNHLEGPIPANL----CKL-NFLTVLDLEVNNISGSLPSCFS------SWLLTQVHLSRNKIEGQLEDVFGDIL 449 (779)
Q Consensus 381 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~~~~~~L 449 (779)
++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+. ..+|++|++++|.+++.....
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 666666666554444322 222 5556666665555543332211 124444444444444322222
Q ss_pred eEEEccCccccCcCchhhhcCC-CCcEEEccCCcCcccCcccc----cCC-CCCCEEEccCCcCcccCCchhhhhccCCC
Q 046050 450 VTLDLSYNRFSGRIPNWIDKLS-HLSYLILANNNLEGEVPVQL----CLL-KQLQLIDLSHNNLSGTIPSCLYKTALGEG 523 (779)
Q Consensus 450 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~ 523 (779)
++..+..++ +|++|+|++|++++..+..+ ..+ ++|++|||++|++++.....+....
T Consensus 158 -------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l---- 220 (362)
T 3goz_A 158 -------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF---- 220 (362)
T ss_dssp -------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----
T ss_pred -------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH----
Confidence 122333443 67777777776665554333 333 4677777777776632211110000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC----cccc
Q 046050 524 NYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP----FQIG 599 (779)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p----~~l~ 599 (779)
....+.|++|||++|.+++..+ ..+.
T Consensus 221 --------------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 221 --------------------------------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp --------------------------------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred --------------------------------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 0001356666666666664433 2345
Q ss_pred CcccCcEEEcCCCcCCccCc-------hhhhCCCCCCEEECCCCcCcCCCchhhh
Q 046050 600 YLNMIRALNLSHNNLMGTIP-------STFSHLSQIESLDLSYNMLQGKIPTQLV 647 (779)
Q Consensus 600 ~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 647 (779)
.+++|+.|+|++|.+.+..+ ..+..+++|+.||+++|++....+..+.
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 56777777777777443333 3456677777788888877766554443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.3e-23 Score=220.70 Aligned_cols=255 Identities=19% Similarity=0.190 Sum_probs=164.2
Q ss_pred EEccCCcCccccCccccCCCCCCEEEccCCccCCCcc----hhhhCCC-CCceEEccCCCCCCCcchhhcCC-----CCC
Q 046050 335 LQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIP----KWLGNLS-NLVDIIMPNNHLEGPIPANLCKL-----NFL 404 (779)
Q Consensus 335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 404 (779)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555555555544444446666666665554444 4455555 55555555555554444444432 555
Q ss_pred CEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHh-------hcceEEEccCccccCcCchhh----hc-CCC
Q 046050 405 TVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG-------DILVTLDLSYNRFSGRIPNWI----DK-LSH 472 (779)
Q Consensus 405 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~----~~-l~~ 472 (779)
++|++++|.++ +..+..+. ..|++|++++|++++..+..+ .. .++
T Consensus 83 ~~L~Ls~n~l~-----------------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 83 TSLNLSGNFLS-----------------------YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp CEEECCSSCGG-----------------------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred cEEECcCCcCC-----------------------hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 55555555554 43333221 126666666666665444333 33 368
Q ss_pred CcEEEccCCcCcccC----cccccCCC-CCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccccc
Q 046050 473 LSYLILANNNLEGEV----PVQLCLLK-QLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAV 547 (779)
Q Consensus 473 L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (779)
|++|+|++|++++.. +..+..++ +|++|++++|++++..+..+....
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------- 191 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------- 191 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------
Confidence 999999999998644 34445665 999999999999866554442110
Q ss_pred CCCCCCCCcccceEEEEEcCceeeeccccc-ceeeEEeccCCccCCC----CCccccC-cccCcEEEcCCCcCCccCc--
Q 046050 548 SPSGSSTMRKEESVEFRTKNTSYYYQGRIL-KIMFGLDLSCNKLTGE----IPFQIGY-LNMIRALNLSHNNLMGTIP-- 619 (779)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p-- 619 (779)
... +.|++|||++|.+++. ++..+.. .++|+.|+|++|.+++..+
T Consensus 192 ---------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 192 ---------------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp ---------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred ---------------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 002 4799999999999963 4445555 4599999999999997655
Q ss_pred --hhhhCCCCCCEEECCCCcCcCCCch-------hhhhcccCcEEEccCCcCcccCC
Q 046050 620 --STFSHLSQIESLDLSYNMLQGKIPT-------QLVELYALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 620 --~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~ls~N~l~~~~p 667 (779)
..+..+++|+.|+|++|++.+..+. .+..+++|++||+++|++.+..|
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3456779999999999997655443 45677889999999999987633
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.3e-22 Score=199.21 Aligned_cols=211 Identities=19% Similarity=0.191 Sum_probs=159.1
Q ss_pred ccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCc
Q 046050 427 LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506 (779)
Q Consensus 427 L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 506 (779)
.++++++++.++.++.. +...++.|++++|.+++..+..+.++++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 16 ~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 45555555555544432 22347888888888887778888999999999999999998888889999999999999999
Q ss_pred CcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEecc
Q 046050 507 LSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLS 586 (779)
Q Consensus 507 l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 586 (779)
+++..+..+ ..+++|++|+|+
T Consensus 95 l~~~~~~~~-----------------------------------------------------------~~l~~L~~L~L~ 115 (251)
T 3m19_A 95 LASLPLGVF-----------------------------------------------------------DHLTQLDKLYLG 115 (251)
T ss_dssp CCCCCTTTT-----------------------------------------------------------TTCTTCCEEECC
T ss_pred ccccChhHh-----------------------------------------------------------cccCCCCEEEcC
Confidence 984333332 115678999999
Q ss_pred CCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccC
Q 046050 587 CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKV 666 (779)
Q Consensus 587 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 666 (779)
+|++++..+..+..+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|+++|.+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 99999777777899999999999999999877778999999999999999999888889999999999999999999874
Q ss_pred CCCCCcCCCC------CCCcccCCCCCCCCCCCCCCCCC
Q 046050 667 PDRVGQFATF------TENSYDGNSLLCGQPLSESCYPN 699 (779)
Q Consensus 667 p~~~~~~~~l------~~~~~~~N~~lc~~~l~~~c~~~ 699 (779)
.+ +..+..+ ......|+. .|+.+....|..+
T Consensus 196 ~~-~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 196 CE-ILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp TT-HHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred cc-cHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 43 2222211 111233443 5666666677544
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.3e-23 Score=220.38 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=55.5
Q ss_pred ccccccCCCCCCEEEccCCcCccccC----ccccCCCCCCEEEccCCcc---CCCcchhh-------hCCCCCceEEccC
Q 046050 322 IFSRSFNLTNLVTLQLDANQFTGGIP----ENLLNCSLLGGLYLSDNHI---SGKIPKWL-------GNLSNLVDIIMPN 387 (779)
Q Consensus 322 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~L~~ 387 (779)
++..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+ ++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34455566777777777777765422 3355667777777776533 33334333 4566666666666
Q ss_pred CCCCC----CcchhhcCCCCCCEEEccCccCc
Q 046050 388 NHLEG----PIPANLCKLNFLTVLDLEVNNIS 415 (779)
Q Consensus 388 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 415 (779)
|.+.+ .++..+..+++|++|++++|.++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 66664 24555555666666666666554
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.2e-21 Score=197.69 Aligned_cols=201 Identities=25% Similarity=0.284 Sum_probs=114.8
Q ss_pred CCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCC
Q 046050 278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLG 357 (779)
Q Consensus 278 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 357 (779)
+++|+.|++++|.+.. ++ ....+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~~----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-VQ----GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCC-CT----TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccc-cc----ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4566666666665541 11 112233455555555555432 2344455555555555555444444444455555
Q ss_pred EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcC
Q 046050 358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKI 437 (779)
Q Consensus 358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l 437 (779)
+|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+ +++|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-----------------------l~~n~l 169 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD-----------------------LSYNQL 169 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----------------------CCSSCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE-----------------------CCCCCc
Confidence 555555555444444444445555555555544444444444444444444 444444
Q ss_pred cccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050 438 EGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515 (779)
Q Consensus 438 ~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 515 (779)
++.++..+... |+.|++++|++++..+..+..+++|+.|++++|++. +.+++|+.++++.|+++|.+|.++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 44444333322 666677777777667777888999999999999887 346678899999999999998877
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=203.81 Aligned_cols=87 Identities=20% Similarity=0.081 Sum_probs=56.1
Q ss_pred CCCCCEEEccCCcCccccCccc--cCCCCCCEEEccCCccCCCcc----hhhhCCCCCceEEccCCCCCCCcchhhcCCC
Q 046050 329 LTNLVTLQLDANQFTGGIPENL--LNCSLLGGLYLSDNHISGKIP----KWLGNLSNLVDIIMPNNHLEGPIPANLCKLN 402 (779)
Q Consensus 329 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 402 (779)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456777777777666666665 666777777777777765433 2334566677777777766666666666666
Q ss_pred CCCEEEccCccCc
Q 046050 403 FLTVLDLEVNNIS 415 (779)
Q Consensus 403 ~L~~L~L~~n~l~ 415 (779)
+|++|++++|++.
T Consensus 170 ~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 170 ALTSLDLSDNPGL 182 (310)
T ss_dssp TCCEEECCSCTTC
T ss_pred CCCEEECCCCCCc
Confidence 6666666666654
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=5.4e-21 Score=192.36 Aligned_cols=179 Identities=20% Similarity=0.209 Sum_probs=160.6
Q ss_pred ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA 528 (779)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~ 528 (779)
.+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|++++..|..+
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------- 79 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF------------- 79 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------------
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-------------
Confidence 678999999998 4565554 689999999999999889999999999999999999986554433
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050 529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN 608 (779)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 608 (779)
..++.|+.|++++|++++..+..|..+++|+.|+
T Consensus 80 ----------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 80 ----------------------------------------------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp ----------------------------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ----------------------------------------------ccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 1157899999999999988888899999999999
Q ss_pred cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCC
Q 046050 609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688 (779)
Q Consensus 609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc 688 (779)
|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+..+..++.+.+.+|++.|
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999998888889999999999999999998888789999999999999999998888788899999999999999999
Q ss_pred C
Q 046050 689 G 689 (779)
Q Consensus 689 ~ 689 (779)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 7
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.4e-22 Score=218.17 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred ccccCCCCCCEEEccCCccCCCcc----hhhhCCCCCceEEccCCCC---CCCcchhh-------cCCCCCCEEEccCcc
Q 046050 348 ENLLNCSLLGGLYLSDNHISGKIP----KWLGNLSNLVDIIMPNNHL---EGPIPANL-------CKLNFLTVLDLEVNN 413 (779)
Q Consensus 348 ~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~~n~ 413 (779)
..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 334444455555555555443322 2233445555555554322 22223222 344555555555555
Q ss_pred Ccc----cCCcCcC-CCcccEEEccCCcCcccchhhHh---------------hcceEEEccCcccc-CcCc---hhhhc
Q 046050 414 ISG----SLPSCFS-SWLLTQVHLSRNKIEGQLEDVFG---------------DILVTLDLSYNRFS-GRIP---NWIDK 469 (779)
Q Consensus 414 l~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~---------------~~L~~L~L~~n~l~-~~~~---~~~~~ 469 (779)
++. .++..+. +++|++|++++|.++...+..+. ..|++|++++|+++ +.++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 443 1222222 44455555555554433322222 23555555555554 2223 34556
Q ss_pred CCCCcEEEccCCcCcc-----cCcccccCCCCCCEEEccCCcCc
Q 046050 470 LSHLSYLILANNNLEG-----EVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 470 l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
+++|++|++++|+++. ..+..+..+++|+.|+|++|.++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 7777777777777762 23336667777777777777775
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=7.6e-22 Score=208.37 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=173.6
Q ss_pred CCCEEEccCCcCccccCccccCC--CCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC-cchhhcCCCCCCEE
Q 046050 331 NLVTLQLDANQFTGGIPENLLNC--SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP-IPANLCKLNFLTVL 407 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 407 (779)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678888888765 3445555 6788888888888766554 44678888888888877654 66677777788888
Q ss_pred EccCccCcccCCcCcC-CCcccEEEccCC-cCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCC-cCc
Q 046050 408 DLEVNNISGSLPSCFS-SWLLTQVHLSRN-KIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-NLE 484 (779)
Q Consensus 408 ~L~~n~l~~~~~~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 484 (779)
++++|.+++..+..+. +++|++|++++| .+++. .++..+..+++|++|++++| .++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------ALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence 8877777654444333 555555555555 33321 23455667777888888888 776
Q ss_pred cc-CcccccCCC-CCCEEEccCCc--Cc-ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccc
Q 046050 485 GE-VPVQLCLLK-QLQLIDLSHNN--LS-GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEE 559 (779)
Q Consensus 485 ~~-~~~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (779)
+. .+..+..++ +|++|++++|. ++ +.+|..+
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-------------------------------------------- 218 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-------------------------------------------- 218 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--------------------------------------------
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--------------------------------------------
Confidence 54 466677777 88888888873 43 2233322
Q ss_pred eEEEEEcCceeeecccccceeeEEeccCCc-cCCCCCccccCcccCcEEEcCCCc-CCccCchhhhCCCCCCEEECCCCc
Q 046050 560 SVEFRTKNTSYYYQGRILKIMFGLDLSCNK-LTGEIPFQIGYLNMIRALNLSHNN-LMGTIPSTFSHLSQIESLDLSYNM 637 (779)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~ 637 (779)
..+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++++|+.|++++|
T Consensus 219 ---------------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 219 ---------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp ---------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred ---------------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 114677888888888 666777788889999999999995 33222236888999999999999
Q ss_pred CcCCCchhhhhc-ccCcEEEccCCcCcccCCCCCC
Q 046050 638 LQGKIPTQLVEL-YALAIFSVAHNNLSGKVPDRVG 671 (779)
Q Consensus 638 l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~~ 671 (779)
++. ..+..+ .++..|++++|++++..|..++
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 442 244444 3477888999999999887543
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.4e-21 Score=206.29 Aligned_cols=255 Identities=16% Similarity=0.170 Sum_probs=169.0
Q ss_pred CCccEEEccccccccccchhhcCC--CCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccc-cChhccCCCCCC
Q 046050 33 TNLEVLILDGSALHIRFLQSIAVL--TSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGT-LPWCLVNMTSLR 109 (779)
Q Consensus 33 ~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~ 109 (779)
..++.++++++.+. +..+..+ +++++|++++|.+.+..+ .+..+++|++|++++|.+++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34788888888765 4555666 788999999998876654 366788999999999988765 777888899999
Q ss_pred EEeCCCCcCcccCCchhhcCCCCCCEEEcccc-cccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEEC
Q 046050 110 ILDIASNQITGNISSSPLRYLTSLEELRVSNN-QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISL 188 (779)
Q Consensus 110 ~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L 188 (779)
+|++++|.+++..+. .++.+++|++|++++| .+++......+.+++ +|++|++
T Consensus 122 ~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-------------------------~L~~L~l 175 (336)
T 2ast_B 122 NLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-------------------------RLDELNL 175 (336)
T ss_dssp EEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-------------------------TCCEEEC
T ss_pred EEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-------------------------CCCEEcC
Confidence 999999988866665 6888899999999988 565321112233344 4555555
Q ss_pred CCC-cCCCC-cchhhhCCC-CCCEEEccCC--CCC-CcCchhhhhcCCCCCEEECcCCc-ccccCCCCCCCCCCccEEEc
Q 046050 189 SGC-RCDFT-FPRFLYYQH-ELRYVDLSHM--NLR-GEFPNWLLENNKELETLLLANNS-LSGFFQMPVNPLKQLTTIDV 261 (779)
Q Consensus 189 ~~n-~~~~~-~~~~l~~~~-~L~~L~Ls~n--~l~-~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L 261 (779)
++| .+++. ++..+..++ +|++|++++| .++ +.++.. +..+++|++|++++|. +++..+..+..+++|++|++
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 555 55543 456666777 7777777777 344 234443 3567777777777777 55555556677777777777
Q ss_pred cCCC-CCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCcccccccc
Q 046050 262 SKNF-IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSF 327 (779)
Q Consensus 262 s~n~-l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 327 (779)
++|. +.......+.. +++|+.|++++| ++.. .+ .... +++.|++++|.+++..|..++
T Consensus 255 ~~~~~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~---~~~~l~~---~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETLLELGE-IPTLKTLQVFGI-VPDG---TLQLLKE---ALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGGGGGGG-CTTCCEEECTTS-SCTT---CHHHHHH---HSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHHHHHhc-CCCCCEEeccCc-cCHH---HHHHHHh---hCcceEEecccCccccCCccc
Confidence 7774 22111112333 677888888777 3311 12 1111 356666778888777766554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=201.50 Aligned_cols=227 Identities=17% Similarity=0.170 Sum_probs=137.5
Q ss_pred CccEEEccccccccccch---hhcCCCCcCEEECCCCCCcccCCcccc--cCCCCCcEEEccCcccccccC----hhccC
Q 046050 34 NLEVLILDGSALHIRFLQ---SIAVLTSVKHLSMRNCYLYGTSDFQGL--CELVHLQELHIGYNNIGGTLP----WCLVN 104 (779)
Q Consensus 34 ~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~----~~~~~ 104 (779)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..+. .+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 345555555554321111 112234566666666666555443 33 556666666666666654333 23345
Q ss_pred CCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCcccc
Q 046050 105 MTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184 (779)
Q Consensus 105 l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 184 (779)
+++|++|++++|+++ .++...++.+++|++|++++|++.+... ......+..+++|+
T Consensus 144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~~~~~~~~l~~L~ 200 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERG----------------------LMAALCPHKFPAIQ 200 (310)
T ss_dssp CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHH----------------------HHTTSCTTSSCCCC
T ss_pred ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchh----------------------hhHHHhhhcCCCCC
Confidence 666666666666665 3333355666666666666665542100 00111223455777
Q ss_pred EEECCCCcCCCCcch----hhhCCCCCCEEEccCCCCCCcCchhhhhcC---CCCCEEECcCCcccccCCCCCCCCCCcc
Q 046050 185 NISLSGCRCDFTFPR----FLYYQHELRYVDLSHMNLRGEFPNWLLENN---KELETLLLANNSLSGFFQMPVNPLKQLT 257 (779)
Q Consensus 185 ~L~L~~n~~~~~~~~----~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 257 (779)
+|++++|+++. ++. .+..+++|++|++++|.+++..|..+ ..+ ++|++|++++|+++.+ |..+. ++|+
T Consensus 201 ~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~ 275 (310)
T 4glp_A 201 NLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLR 275 (310)
T ss_dssp SCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCS
T ss_pred EEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCch-hhhhc--CCCC
Confidence 77788777752 222 35677889999999999886656654 344 6899999999998854 44443 7899
Q ss_pred EEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCC
Q 046050 258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292 (779)
Q Consensus 258 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~ 292 (779)
+|++++|+++ .+|. ...+++|+.|++++|+++
T Consensus 276 ~L~Ls~N~l~-~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 276 VLDLSSNRLN-RAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CEECCSCCCC-SCCC--TTSCCCCSCEECSSTTTS
T ss_pred EEECCCCcCC-CCch--hhhCCCccEEECcCCCCC
Confidence 9999999998 5554 234789999999999886
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.4e-20 Score=192.37 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=56.3
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV 657 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 657 (779)
+.|+.|++++|++++ ++. +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++
T Consensus 151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l 224 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence 455666666666663 332 6677777888888887775443 7777888888888888875443 677788888888
Q ss_pred cCCcCcc
Q 046050 658 AHNNLSG 664 (779)
Q Consensus 658 s~N~l~~ 664 (779)
++|++++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 8888764
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.9e-20 Score=185.58 Aligned_cols=196 Identities=12% Similarity=0.144 Sum_probs=107.0
Q ss_pred CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcc-cccccChhccCCCCCCEEeCCC-CcCcccCCchhhcCCCCCCE
Q 046050 58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN-IGGTLPWCLVNMTSLRILDIAS-NQITGNISSSPLRYLTSLEE 135 (779)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~i~~~~~~~l~~L~~ 135 (779)
+|++|++++|.+.+..+ ..+..+++|++|++++|+ +++..+.+|.++++|++|++++ |+++ .++...|..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 45555555555543222 244455555555555554 4444444555555555555554 5555 444334555555555
Q ss_pred EEcccccccccCCcccccCCCCCc---EEECcCC-ceeeecccCCCCCCcccc-EEECCCCcCCCCcchhhhCCCCCCEE
Q 046050 136 LRVSNNQFQIPISFEPFFNHSKLK---KFYGQKN-RLFVEIESHSLTPKFQLQ-NISLSGCRCDFTFPRFLYYQHELRYV 210 (779)
Q Consensus 136 L~Ls~n~l~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~l~~~~~L~~L 210 (779)
|++++|++++ ++. +..+++|+ .|++++| .+ ..++...+..+.+|+ +|++++|++. .+|......++|+.|
T Consensus 110 L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184 (239)
T ss_dssp EEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred EeCCCCCCcc-ccc--cccccccccccEEECCCCcch-hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence 5555555543 221 44444444 5555555 33 234444555566666 6677666666 333333233677777
Q ss_pred EccCCC-CCCcCchhhhhcC-CCCCEEECcCCcccccCCCCCCCCCCccEEEccCC
Q 046050 211 DLSHMN-LRGEFPNWLLENN-KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264 (779)
Q Consensus 211 ~Ls~n~-l~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 264 (779)
++++|+ ++ .+|...+..+ ++|++|++++|+++.+.+. .+++|+.|+++++
T Consensus 185 ~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred EcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 777774 66 5555555666 7777777777777654332 5667777777665
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.2e-20 Score=186.48 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=104.7
Q ss_pred CCCCEEEccCCcCCcccCcccccccCCccccEEEccCCc-CCccccccccCCCCCCEEEccC-CcCccccCccccCCCCC
Q 046050 279 PRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS-LQGHIFSRSFNLTNLVTLQLDA-NQFTGGIPENLLNCSLL 356 (779)
Q Consensus 279 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L 356 (779)
+++++|++++|.+++..+..+ .++++|++|++++|. ++...+..+.++++|++|++++ |++++..+..|.++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~---~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF---SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT---TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHHHc---cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 356666666666553333222 122345555555554 4444334444555555555554 45543333444445555
Q ss_pred CEEEccCCccCCCcchhhhCCCCCc---eEEccCC-CCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCccc-EEE
Q 046050 357 GGLYLSDNHISGKIPKWLGNLSNLV---DIIMPNN-HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT-QVH 431 (779)
Q Consensus 357 ~~L~L~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~-~L~ 431 (779)
++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|.+++ +|+ .|+
T Consensus 108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-----------------------~L~~~L~ 162 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----------------------NETLTLK 162 (239)
T ss_dssp CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-----------------------SSEEEEE
T ss_pred CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-----------------------cceeEEE
Confidence 555555555443 332 44444444 4444444 44433333344444 444 555
Q ss_pred ccCCcCcccchhhHhhc-ceEEEccCcc-ccCcCchhhhcC-CCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050 432 LSRNKIEGQLEDVFGDI-LVTLDLSYNR-FSGRIPNWIDKL-SHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN 505 (779)
Q Consensus 432 l~~n~l~~~~~~~~~~~-L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 505 (779)
+++|+++.+++..+... |+.|++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 163 l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred cCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 55555544443333322 6667777774 665556677778 8888888888888854443 5677888888765
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.6e-19 Score=185.68 Aligned_cols=192 Identities=22% Similarity=0.288 Sum_probs=107.8
Q ss_pred CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC
Q 046050 203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE 282 (779)
Q Consensus 203 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 282 (779)
.+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++ .+.. +++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCC
T ss_pred HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCC
Confidence 3456666666666665 4443 3556666666666666665433 666666666666666665 343 2322 55666
Q ss_pred EEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEcc
Q 046050 283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS 362 (779)
Q Consensus 283 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 362 (779)
+|++++|.+++. +. ...+++|++|++++|.+++..+ +..+++|+.|++++|++++. +. +..+++|++|+++
T Consensus 111 ~L~l~~n~l~~~-~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 111 TLDLTSTQITDV-TP----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD 181 (308)
T ss_dssp EEECTTSCCCCC-GG----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred EEECCCCCCCCc-hh----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence 666666665532 11 2233355555555555554322 55566666666666666532 22 5566666666666
Q ss_pred CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS 415 (779)
Q Consensus 363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 415 (779)
+|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 666654332 555666666666666665433 2555666666666666655
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.7e-19 Score=190.91 Aligned_cols=196 Identities=18% Similarity=0.099 Sum_probs=107.7
Q ss_pred cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCce-EEcc
Q 046050 309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIP-KWLGNLSNLVD-IIMP 386 (779)
Q Consensus 309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~L~ 386 (779)
+.++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44555666665 334433 2466777777777764444566777777777777777655443 45666666554 4445
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccC-CcCcccchhhHhhc---ceEEEccCccccC
Q 046050 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSR-NKIEGQLEDVFGDI---LVTLDLSYNRFSG 461 (779)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~-n~l~~~~~~~~~~~---L~~L~L~~n~l~~ 461 (779)
.|+++...|..|..+++|++|++++|+++...+..+. ...+..+++.+ +.+....+..|... ++.|++++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5667655666677777777777777777655444333 44455555543 34544444333322 4455555555553
Q ss_pred cCchhhhcCCCCcEEEccC-CcCcccCcccccCCCCCCEEEccCCcCc
Q 046050 462 RIPNWIDKLSHLSYLILAN-NNLEGEVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 462 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
..+..+ ...+|+++++.+ |.++...++.|..+++|++||+++|+++
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 222222 334455555543 3444333344555555555555555554
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.5e-19 Score=174.59 Aligned_cols=178 Identities=21% Similarity=0.191 Sum_probs=140.3
Q ss_pred EEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050 429 QVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 429 ~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
.++.+++.++..+... ...+++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 4444455444443222 223777888888887666777888999999999999999777777889999999999999998
Q ss_pred ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050 509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN 588 (779)
Q Consensus 509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 588 (779)
+..+..+ ..+++|++|++++|
T Consensus 90 ~~~~~~~-----------------------------------------------------------~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 90 SLPNGVF-----------------------------------------------------------DKLTQLKELALNTN 110 (208)
T ss_dssp CCCTTTT-----------------------------------------------------------TTCTTCCEEECCSS
T ss_pred ccCHhHh-----------------------------------------------------------cCccCCCEEEcCCC
Confidence 4333222 11567899999999
Q ss_pred ccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 589 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
++++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+. ++.|++|+++.|+++|.+|.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBC
T ss_pred cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeec
Confidence 99977777789999999999999999987777799999999999999998854 35789999999999999998
Q ss_pred CCCcC
Q 046050 669 RVGQF 673 (779)
Q Consensus 669 ~~~~~ 673 (779)
.++.+
T Consensus 184 ~~~~l 188 (208)
T 2o6s_A 184 SAGSV 188 (208)
T ss_dssp TTSSB
T ss_pred cCccc
Confidence 65543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.5e-19 Score=201.02 Aligned_cols=189 Identities=25% Similarity=0.334 Sum_probs=113.3
Q ss_pred CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccC
Q 046050 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSR 434 (779)
Q Consensus 355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 434 (779)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~-------- 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-S-------- 121 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-T--------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-C--------
Confidence 67777777777764 44433 256667777776666 444 335666666666666665 333 211 3
Q ss_pred CcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCch
Q 046050 435 NKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC 514 (779)
Q Consensus 435 n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 514 (779)
|+.|++++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|.
T Consensus 122 --------------L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 122 --------------LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp --------------CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred --------------CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-
Confidence 4455555555544 333 45666666666666664 333 35566666666666653 443
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCC
Q 046050 515 LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI 594 (779)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 594 (779)
+ .++|+.|+|++|+|+ .+
T Consensus 178 l-------------------------------------------------------------~~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 178 L-------------------------------------------------------------PESLEALDVSTNLLE-SL 195 (571)
T ss_dssp C-------------------------------------------------------------CTTCCEEECCSSCCS-SC
T ss_pred h-------------------------------------------------------------hCCCCEEECcCCCCC-ch
Confidence 2 124566666666666 45
Q ss_pred CccccCcccC-------cEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhccc
Q 046050 595 PFQIGYLNMI-------RALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYA 651 (779)
Q Consensus 595 p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 651 (779)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 54 443 55 77888888777 56776777888888888888888777777777654
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.5e-19 Score=201.05 Aligned_cols=187 Identities=24% Similarity=0.295 Sum_probs=140.4
Q ss_pred CCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCc
Q 046050 403 FLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482 (779)
Q Consensus 403 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 482 (779)
+++.|++++|.++++++.. .++|+.|++++|.++.++ .+...|+.|++++|++++ +|. +.+ +|++|++++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence 4555555555555422222 244555555555555433 222337788888888886 555 544 99999999999
Q ss_pred CcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEE
Q 046050 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVE 562 (779)
Q Consensus 483 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (779)
+++ +|. .+++|+.|++++|++++ +|. .
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-~----------------------------------------------- 158 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTM-LPE-L----------------------------------------------- 158 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CCC-C-----------------------------------------------
T ss_pred CCC-CCC---cCccccEEeCCCCccCc-CCC-c-----------------------------------------------
Confidence 997 555 68999999999999984 554 1
Q ss_pred EEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCC-------CEEECCC
Q 046050 563 FRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQI-------ESLDLSY 635 (779)
Q Consensus 563 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~ 635 (779)
+++|+.|+|++|++++ +|. +. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++
T Consensus 159 --------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 159 --------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp --------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred --------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 4678999999999996 776 66 99999999999999 6676 654 77 9999999
Q ss_pred CcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcC
Q 046050 636 NMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQF 673 (779)
Q Consensus 636 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 673 (779)
|+|+ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999 688888889999999999999999988765544
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=9.3e-19 Score=185.24 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred CEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCE-EEc
Q 046050 60 KHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEE-LRV 138 (779)
Q Consensus 60 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~-L~L 138 (779)
++++.++++++ .+|. .+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|.++|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666664 3442 33 3567777777777775555567777777777777777655666656677766654 444
Q ss_pred cccccc
Q 046050 139 SNNQFQ 144 (779)
Q Consensus 139 s~n~l~ 144 (779)
+.|+++
T Consensus 88 ~~N~l~ 93 (350)
T 4ay9_X 88 KANNLL 93 (350)
T ss_dssp EETTCC
T ss_pred cCCccc
Confidence 556655
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=173.68 Aligned_cols=157 Identities=21% Similarity=0.184 Sum_probs=121.5
Q ss_pred eEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050 450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA 528 (779)
Q Consensus 450 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~ 528 (779)
+.+++++|.++. +|..+ ...+++|+|++|++++..+ ..|..+++|++|++++|++++..+..+ +
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------~----- 78 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-------E----- 78 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-------T-----
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-------C-----
Confidence 456666666663 44433 2345777888887776643 456777888888888888774433333 1
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050 529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN 608 (779)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 608 (779)
.++.|++|+|++|++++..+..|..+++|+.|+
T Consensus 79 -----------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 79 -----------------------------------------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp -----------------------------------------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred -----------------------------------------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 145677888888888877777788899999999
Q ss_pred cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050 609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|+++|.++-
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999988899999999999999999999988899999999999999999999988874
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=5.9e-19 Score=173.13 Aligned_cols=156 Identities=23% Similarity=0.225 Sum_probs=121.8
Q ss_pred eEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCC
Q 046050 450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAA 529 (779)
Q Consensus 450 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~ 529 (779)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|++++..|..+ .
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-------~------ 77 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-------Q------ 77 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-------T------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-------h------
Confidence 35566666666 3444332 577888888888877777777788888888888888875555544 1
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEc
Q 046050 530 PTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNL 609 (779)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 609 (779)
.++.|++|+|++|++++..+..|..+++|+.|+|
T Consensus 78 ----------------------------------------------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 78 ----------------------------------------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp ----------------------------------------------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ----------------------------------------------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 1456778888888888555666788999999999
Q ss_pred CCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCC
Q 046050 610 SHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 610 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 667 (779)
++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999998888999999999999999999998888889999999999999999988765
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=174.11 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=140.7
Q ss_pred CcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 046050 473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGS 552 (779)
Q Consensus 473 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (779)
-+.+++++|.++. +|..+. +.+++|++++|++++..|...+.
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~----------------------------------- 54 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFK----------------------------------- 54 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGG-----------------------------------
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhc-----------------------------------
Confidence 3589999999985 565443 46799999999998654543211
Q ss_pred CCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEE
Q 046050 553 STMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLD 632 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 632 (779)
.++.|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus 55 -----------------------~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 55 -----------------------KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp -----------------------GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred -----------------------cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 257899999999999988888999999999999999999988899999999999999
Q ss_pred CCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050 633 LSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 633 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l 692 (779)
|++|++++..|..|..+++|++|++++|++++..|..+..+..++.+.+.+|++.|+|++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999999999999999999999999999899899999999999999999999874
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5e-19 Score=188.11 Aligned_cols=180 Identities=23% Similarity=0.202 Sum_probs=139.4
Q ss_pred cEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhh-cCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCc
Q 046050 428 TQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWID-KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506 (779)
Q Consensus 428 ~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 506 (779)
+.++++++.++.++. .+...++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 455555555555433 2233367778888888777677776 88999999999999988888888999999999999999
Q ss_pred CcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEecc
Q 046050 507 LSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLS 586 (779)
Q Consensus 507 l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 586 (779)
+++..+..+ ..++.|+.|+|+
T Consensus 100 l~~~~~~~~-----------------------------------------------------------~~l~~L~~L~L~ 120 (361)
T 2xot_A 100 LHTLDEFLF-----------------------------------------------------------SDLQALEVLLLY 120 (361)
T ss_dssp CCEECTTTT-----------------------------------------------------------TTCTTCCEEECC
T ss_pred CCcCCHHHh-----------------------------------------------------------CCCcCCCEEECC
Confidence 874333322 115678889999
Q ss_pred CCccCCCCCccccCcccCcEEEcCCCcCCccCchhh---hCCCCCCEEECCCCcCcCCCchhhhhccc--CcEEEccCCc
Q 046050 587 CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTF---SHLSQIESLDLSYNMLQGKIPTQLVELYA--LAIFSVAHNN 661 (779)
Q Consensus 587 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~ 661 (779)
+|++++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|||++|++++..+..+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 999998788899999999999999999996555555 67899999999999999777778888887 4889999999
Q ss_pred CcccCC
Q 046050 662 LSGKVP 667 (779)
Q Consensus 662 l~~~~p 667 (779)
+.|.|.
T Consensus 201 ~~C~C~ 206 (361)
T 2xot_A 201 LECDCK 206 (361)
T ss_dssp EECCHH
T ss_pred ccCCcC
Confidence 988764
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=8.1e-19 Score=172.15 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=138.5
Q ss_pred cEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 046050 474 SYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSS 553 (779)
Q Consensus 474 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (779)
+.++++++.++ .+|..+. ++++.|++++|++++..+..+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~-------------------------------------- 52 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAF-------------------------------------- 52 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSS--------------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHh--------------------------------------
Confidence 67999999998 4555443 689999999999985433333
Q ss_pred CCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEEC
Q 046050 554 TMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDL 633 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 633 (779)
..++.|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|.++++|+.|+|
T Consensus 53 ---------------------~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 53 ---------------------SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp ---------------------TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ---------------------hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 11568999999999999888999999999999999999999777778899999999999
Q ss_pred CCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050 634 SYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 634 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l 692 (779)
++|++++..|..|..+++|++|++++|++++..+..+..+..++.+.+.+||+.|+|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999999999999999999999999999988888788899999999999999999865
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.9e-19 Score=189.89 Aligned_cols=182 Identities=23% Similarity=0.205 Sum_probs=151.7
Q ss_pred ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEccCCcCcccCCchhhhhccCCCCCCC
Q 046050 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDS 527 (779)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~ 527 (779)
-+.++++++.++. +|..+. +.++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..+ .
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------~---- 85 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-------V---- 85 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-------T----
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-------c----
Confidence 4689999999984 565443 4689999999999988888887 99999999999999985444434 1
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEE
Q 046050 528 AAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRAL 607 (779)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 607 (779)
.++.|+.|||++|+|++..+..|..+++|+.|
T Consensus 86 ------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 86 ------------------------------------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp ------------------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ------------------------------------------------CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 15789999999999998778889999999999
Q ss_pred EcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh---hhcccCcEEEccCCcCcccCCCCCCcCCC--CCCCccc
Q 046050 608 NLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL---VELYALAIFSVAHNNLSGKVPDRVGQFAT--FTENSYD 682 (779)
Q Consensus 608 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N~l~~~~p~~~~~~~~--l~~~~~~ 682 (779)
+|++|+|++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|++++|++++..+..+..+.. +..+.+.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 999999998889999999999999999999996555555 67999999999999999655444455554 3678899
Q ss_pred CCCCCCCCCC
Q 046050 683 GNSLLCGQPL 692 (779)
Q Consensus 683 ~N~~lc~~~l 692 (779)
+||+.|+|.+
T Consensus 198 ~N~~~C~C~l 207 (361)
T 2xot_A 198 NNPLECDCKL 207 (361)
T ss_dssp SSCEECCHHH
T ss_pred CCCccCCcCc
Confidence 9999999853
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.3e-18 Score=169.01 Aligned_cols=186 Identities=22% Similarity=0.275 Sum_probs=140.3
Q ss_pred ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA 528 (779)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~ 528 (779)
.+.++.+++.++ .+|..+ .++|++|+|++|++++..|..|..+++|++|+|++|+++ .+|...+.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~----------- 85 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFD----------- 85 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcc-----------
Confidence 456677777766 444433 278888888888888888888888888899999888886 44433211
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050 529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN 608 (779)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 608 (779)
.++.|+.|+|++|++++..+..|..+++|+.|+
T Consensus 86 -----------------------------------------------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 86 -----------------------------------------------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp -----------------------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -----------------------------------------------cCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 146788899999999877777789999999999
Q ss_pred cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCC------CCccc
Q 046050 609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFT------ENSYD 682 (779)
Q Consensus 609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~------~~~~~ 682 (779)
|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.++. +..+..+. ...++
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~-~~~l~~~~~~~~~~~~~~~ 196 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD-IMYLRNWVADHTSIAMRWD 196 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG-GHHHHHHHHHCGGGEEEES
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch-hHHHHHHHHhCcccccccc
Confidence 9999999 7888899999999999999999987778899999999999999999988873 12222211 12345
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 046050 683 GNSLLCGQPLSESCYPNG 700 (779)
Q Consensus 683 ~N~~lc~~~l~~~c~~~~ 700 (779)
|++ +..+-...|..++
T Consensus 197 g~~--v~~~~~~~C~~~~ 212 (229)
T 3e6j_A 197 GKA--VNDPDSAKCAGTN 212 (229)
T ss_dssp SSE--EECTTCSBBTTTC
T ss_pred Ccc--cCCCCcCccCCCC
Confidence 554 3445556775543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=5.3e-18 Score=165.16 Aligned_cols=160 Identities=22% Similarity=0.157 Sum_probs=85.8
Q ss_pred ccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387 (779)
Q Consensus 308 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 387 (779)
|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 44444444444433333344555555555555555544344455555566666665555544444455556666666666
Q ss_pred CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchh
Q 046050 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW 466 (779)
Q Consensus 388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 466 (779)
|++++..+..|..+++|+.|++++|++++..+..+. +++|+.|++++|.+.+..+ .++.|+++.|+++|.+|..
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-----TTHHHHHHHHHCTTTBBCT
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-----CHHHHHHHHHhCCceeecc
Confidence 665554444555566666666666666554444443 4555555555555443322 1556666666666666666
Q ss_pred hhcCCC
Q 046050 467 IDKLSH 472 (779)
Q Consensus 467 ~~~l~~ 472 (779)
++.++.
T Consensus 185 ~~~l~~ 190 (208)
T 2o6s_A 185 AGSVAP 190 (208)
T ss_dssp TSSBCT
T ss_pred CccccC
Confidence 655443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=8.6e-18 Score=166.00 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=137.6
Q ss_pred CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 046050 472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSG 551 (779)
Q Consensus 472 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (779)
+.+.++.++++++ .+|..+. ++|++|++++|++++..|..+ +
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~-------~---------------------------- 61 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF-------D---------------------------- 61 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-------T----------------------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh-------h----------------------------
Confidence 3578999999998 4555443 899999999999997666554 1
Q ss_pred CCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEE
Q 046050 552 SSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL 631 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 631 (779)
.++.|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 62 ------------------------~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 62 ------------------------SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp ------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ------------------------CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 15689999999999997666778999999999999999998888889999999999
Q ss_pred ECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 632 DLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 632 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
+|++|+++ .+|..+..+++|++|++++|++++..+..+..+..++.+.+.+||+.|.|+
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999 789999999999999999999998777778889999999999999999885
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.6e-17 Score=168.95 Aligned_cols=186 Identities=22% Similarity=0.283 Sum_probs=128.7
Q ss_pred EEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCc
Q 046050 383 IIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGR 462 (779)
Q Consensus 383 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~ 462 (779)
+.+..+.+.+..+ +..+++|+.|++++|.+... +....+++ |++|++++|++++.
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~----------------------L~~L~L~~n~l~~~ 83 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPN----------------------VTKLFLNGNKLTDI 83 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTT----------------------CCEEECCSSCCCCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCC----------------------CCEEEccCCccCCC
Confidence 3444444443222 23566677777777766633 32222444 44555555555543
Q ss_pred CchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcc
Q 046050 463 IPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPA 542 (779)
Q Consensus 463 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 542 (779)
.+ +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++ .+
T Consensus 84 ~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~-~~-~l--------------------------- 130 (291)
T 1h6t_A 84 KP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GL--------------------------- 130 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC-CG-GG---------------------------
T ss_pred cc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCCCcCCC-Ch-hh---------------------------
Confidence 33 67778888888888888752 2 37788888888888888874 22 12
Q ss_pred cccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhh
Q 046050 543 AGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTF 622 (779)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 622 (779)
..++.|+.|++++|++++. ..+..+++|+.|++++|++++..| +
T Consensus 131 --------------------------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 131 --------------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp --------------------------------GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred --------------------------------cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 1146788888888888854 578888999999999999986555 8
Q ss_pred hCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050 623 SHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG 664 (779)
Q Consensus 623 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 664 (779)
..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 889999999999999985 44 48889999999999999875
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=5.7e-20 Score=205.72 Aligned_cols=122 Identities=24% Similarity=0.230 Sum_probs=88.6
Q ss_pred CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 046050 472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSG 551 (779)
Q Consensus 472 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (779)
.|+.|+|++|++++ +|. +..+++|+.|+|++|+++ .+|..+.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~----------------------------------- 483 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA----------------------------------- 483 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-----------------------------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-----------------------------------
Confidence 47778888888775 454 777788888888888877 6666541
Q ss_pred CCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccC-chhhhCCCCCCE
Q 046050 552 SSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTI-PSTFSHLSQIES 630 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~ 630 (779)
.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|++++.. |..|+.+++|+.
T Consensus 484 ------------------------~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 484 ------------------------ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp ------------------------GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ------------------------cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 14566777777777774 55 6777888888888888888766 888888888888
Q ss_pred EECCCCcCcCCCch---hhhhcccCcEEEc
Q 046050 631 LDLSYNMLQGKIPT---QLVELYALAIFSV 657 (779)
Q Consensus 631 L~Ls~N~l~~~~p~---~l~~l~~L~~L~l 657 (779)
|+|++|++++.+|. .+..+++|+.||+
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888866543 2344778887764
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.4e-17 Score=157.86 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=53.3
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV 657 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 657 (779)
+.|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 34455555555555455555555666666666666666555555666666666666666666655666666666666666
Q ss_pred cCCcCcccCC
Q 046050 658 AHNNLSGKVP 667 (779)
Q Consensus 658 s~N~l~~~~p 667 (779)
++|+++|.++
T Consensus 134 ~~N~l~c~c~ 143 (192)
T 1w8a_A 134 ASNPFNCNCH 143 (192)
T ss_dssp TTCCBCCSGG
T ss_pred CCCCccCcCc
Confidence 6666665554
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=9.9e-18 Score=160.60 Aligned_cols=182 Identities=23% Similarity=0.268 Sum_probs=138.1
Q ss_pred ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc-cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCC
Q 046050 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV-QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDS 527 (779)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~ 527 (779)
-+.+++++|.++ .+|..+. .++++|++++|++++..+. .|..+++|++|+|++|++++..|..+ +
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~---- 75 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-------E---- 75 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-------T----
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-------C----
Confidence 468999999997 5665443 3899999999999977764 58999999999999999997666655 1
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEE
Q 046050 528 AAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRAL 607 (779)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 607 (779)
.++.|++|+|++|++++..|..|..+++|+.|
T Consensus 76 ------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 76 ------------------------------------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp ------------------------------------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred ------------------------------------------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 15679999999999998888889999999999
Q ss_pred EcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCC
Q 046050 608 NLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL 687 (779)
Q Consensus 608 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~l 687 (779)
+|++|++++..|..|..+++|+.|+|++|++++..+...- ...++...+.++...|..|..+ ......++..+...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~l---~~~~l~~l~~~~~~ 183 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK 183 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChHH---cCCChhhCcHhhcC
Confidence 9999999999999999999999999999999987663211 1123334556677777777643 33344456666666
Q ss_pred CCCCCCCCC
Q 046050 688 CGQPLSESC 696 (779)
Q Consensus 688 c~~~l~~~c 696 (779)
|..+.+..|
T Consensus 184 C~~~~~~~c 192 (192)
T 1w8a_A 184 CSSENSEGC 192 (192)
T ss_dssp CCCC---CC
T ss_pred cCCCCCCCC
Confidence 765444333
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=4.8e-17 Score=183.02 Aligned_cols=191 Identities=22% Similarity=0.282 Sum_probs=117.7
Q ss_pred CCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCcc
Q 046050 379 NLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNR 458 (779)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~ 458 (779)
.+..+.+..+.+....+ +..+++|+.|++++|.+... +....+++|+.|+|++|.+++.++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---------------- 82 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---------------- 82 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG----------------
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh----------------
Confidence 34455666666664333 45677788888888887643 333335566666665555554332
Q ss_pred ccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCC
Q 046050 459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGA 538 (779)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (779)
+..+++|+.|+|++|++.+. | .+..+++|+.|+|++|++.+ ++ .+
T Consensus 83 --------l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l~-~l----------------------- 127 (605)
T 1m9s_A 83 --------LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GL----------------------- 127 (605)
T ss_dssp --------GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCC-CG-GG-----------------------
T ss_pred --------hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCC-Cc-cc-----------------------
Confidence 55566666666666666532 2 45666666666666666653 21 11
Q ss_pred CCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccC
Q 046050 539 SSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTI 618 (779)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 618 (779)
..++.|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 128 ------------------------------------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 128 ------------------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp ------------------------------------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred ------------------------------------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 0135566666666666643 45666777777777777777555
Q ss_pred chhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCccc
Q 046050 619 PSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGK 665 (779)
Q Consensus 619 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 665 (779)
| +..+++|+.|+|++|++++. | .+..+++|+.|++++|++++.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 5 67777777777777777653 3 466777777777777777654
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.2e-16 Score=162.02 Aligned_cols=170 Identities=22% Similarity=0.319 Sum_probs=96.6
Q ss_pred CCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccc
Q 046050 229 NKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL 308 (779)
Q Consensus 229 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 308 (779)
+++|++|++++|.+... ..+..+++|++|++++|.++ .++. +. .+++|++|++++|.+++ ++. ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~----l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LSS----LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GGG----GTTCTTC
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-Chh----hccCCCC
Confidence 34455555555544433 12444555555555555554 3333 22 24555555555555442 111 2223355
Q ss_pred cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCC
Q 046050 309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388 (779)
Q Consensus 309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 388 (779)
+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 5555555555532 3455667777777777777643 456677777777777777775443 667777777777777
Q ss_pred CCCCCcchhhcCCCCCCEEEccCccCcc
Q 046050 389 HLEGPIPANLCKLNFLTVLDLEVNNISG 416 (779)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 416 (779)
.+++ ++ .+..+++|+.|++++|+++.
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 7764 33 36677777777777777664
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=6.1e-17 Score=163.41 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=137.7
Q ss_pred CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEcc
Q 046050 424 SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503 (779)
Q Consensus 424 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 503 (779)
+..+..+++++|.+++.....-...|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 34566677777777766633223338888999888884 44 68889999999999999986555 8999999999999
Q ss_pred CCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEE
Q 046050 504 HNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGL 583 (779)
Q Consensus 504 ~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 583 (779)
+|++++ +|... .+.|+.|
T Consensus 94 ~N~l~~-l~~~~-------------------------------------------------------------~~~L~~L 111 (263)
T 1xeu_A 94 RNRLKN-LNGIP-------------------------------------------------------------SACLSRL 111 (263)
T ss_dssp SSCCSC-CTTCC-------------------------------------------------------------CSSCCEE
T ss_pred CCccCC-cCccc-------------------------------------------------------------cCcccEE
Confidence 999974 33211 1468899
Q ss_pred eccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc
Q 046050 584 DLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663 (779)
Q Consensus 584 dLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 663 (779)
++++|++++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|++++. ..+..+++|++|++++|+++
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 999999995 43 589999999999999999964 4 689999999999999999976 67889999999999999998
Q ss_pred ccC
Q 046050 664 GKV 666 (779)
Q Consensus 664 ~~~ 666 (779)
+..
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 663
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=155.49 Aligned_cols=114 Identities=23% Similarity=0.343 Sum_probs=105.8
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV 657 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 657 (779)
+.++.|++++|+++ .+|..|..+++|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 56889999999999 78899999999999999999999888899999999999999999999988889999999999999
Q ss_pred cCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050 658 AHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL 692 (779)
Q Consensus 658 s~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l 692 (779)
++|++++..+..+..+..++.+.+.+||+.|+|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999977776788899999999999999999864
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=3.6e-17 Score=184.10 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=37.8
Q ss_pred CCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCC
Q 046050 55 VLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLE 134 (779)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~ 134 (779)
.+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|+++ .++ .+..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence 34444445555544432 12 24444555555555555443322 444555555555555554 333 244455555
Q ss_pred EEEccccccc
Q 046050 135 ELRVSNNQFQ 144 (779)
Q Consensus 135 ~L~Ls~n~l~ 144 (779)
+|+|++|+++
T Consensus 113 ~L~Ls~N~l~ 122 (605)
T 1m9s_A 113 SLSLEHNGIS 122 (605)
T ss_dssp EEECTTSCCC
T ss_pred EEEecCCCCC
Confidence 5555555444
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-16 Score=153.70 Aligned_cols=149 Identities=16% Similarity=0.218 Sum_probs=99.6
Q ss_pred ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA 528 (779)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~ 528 (779)
++.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+ +
T Consensus 46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-------~----- 109 (197)
T 4ezg_A 46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-------S----- 109 (197)
T ss_dssp CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-------T-----
T ss_pred ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-------c-----
Confidence 677777777776 344 4677777777777777654 23356777777777777777765444433 1
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050 529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN 608 (779)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 608 (779)
.+++|+.|++++|++++..|..++.+++|+.|+
T Consensus 110 -----------------------------------------------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 110 -----------------------------------------------GLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp -----------------------------------------------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred -----------------------------------------------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 145677777777777766677777777777777
Q ss_pred cCCCc-CCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050 609 LSHNN-LMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG 664 (779)
Q Consensus 609 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 664 (779)
+++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 77777 54 444 57777777777777777774 33 56777777777777777653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.7e-19 Score=199.16 Aligned_cols=89 Identities=27% Similarity=0.332 Sum_probs=83.8
Q ss_pred cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC-chhhhhcccCcEE
Q 046050 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI-PTQLVELYALAIF 655 (779)
Q Consensus 577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 655 (779)
++.|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .++++++|+.|+|++|++++.+ |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 578999999999999 889999999999999999999996 67 8999999999999999999887 9999999999999
Q ss_pred EccCCcCcccCCC
Q 046050 656 SVAHNNLSGKVPD 668 (779)
Q Consensus 656 ~ls~N~l~~~~p~ 668 (779)
++++|++++.+|.
T Consensus 539 ~L~~N~l~~~~~~ 551 (567)
T 1dce_A 539 NLQGNSLCQEEGI 551 (567)
T ss_dssp ECTTSGGGGSSSC
T ss_pred EecCCcCCCCccH
Confidence 9999999988775
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2.4e-16 Score=165.12 Aligned_cols=283 Identities=11% Similarity=0.068 Sum_probs=154.5
Q ss_pred CCCCcEEeCCCCcc-----ccCC-CCCccEEEccccccc--cccchhhcCCCCcCEEECCCCCCcccCCcccccC-----
Q 046050 14 FPNLETLELRDYHL-----ELLN-FTNLEVLILDGSALH--IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCE----- 80 (779)
Q Consensus 14 ~~~L~~L~Ls~~~~-----~~~~-l~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----- 80 (779)
+++++.|.++++-- .+.. +++|++|+|++|++. ......+ +.++.+.+..+.+ +...|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I----~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV----PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE----CTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc----CHHHhccccccc
Confidence 44566666655321 1222 556666666666655 2111111 1234444444422 2234445
Q ss_pred ---CCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCC
Q 046050 81 ---LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSK 157 (779)
Q Consensus 81 ---l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 157 (779)
+++|++|+|++ +++.+.+.+|.+|++|+.+++++|.++ .++..+|..+.++.++..+.+.....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~----------- 163 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRF----------- 163 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHT-----------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhc-----------
Confidence 66666666666 555555556666666666666666665 55555566555555554443221000
Q ss_pred CcEEECcCCceeeecccCCCCCCcccc-EEECCCCcCCCCcchhhh----CCCCCCEEEccCCCCCCcCchhhhhcCCCC
Q 046050 158 LKKFYGQKNRLFVEIESHSLTPKFQLQ-NISLSGCRCDFTFPRFLY----YQHELRYVDLSHMNLRGEFPNWLLENNKEL 232 (779)
Q Consensus 158 L~~L~l~~~~l~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~l~----~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 232 (779)
...+....|..+..|+ .+.+.... .++..+. ...+++.+.+.++-.. .-...+...+++|
T Consensus 164 -----------~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L 228 (329)
T 3sb4_A 164 -----------KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL 228 (329)
T ss_dssp -----------STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred -----------cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence 0011122222233333 23332211 2222221 2345666666654222 2222233346777
Q ss_pred CEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC-EEEccCCcCCcccCcccccccCCccccEE
Q 046050 233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE-HFNISRNVLNGSIPCSLHMTMGCFSLQIL 311 (779)
Q Consensus 233 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 311 (779)
+++++++|+++.+.+.+|..+.+|+.+++++| ++ .|+...|..+++|+ .+++.+ .++...+. .+.+|.+|+.+
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~L~~l 302 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDNLRYV 302 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTTEEEE
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchh---hhhCCccCCEE
Confidence 88888777777777777777788888888776 65 67777777777787 777776 55433332 34566688888
Q ss_pred EccCCcCCccccccccCCCCCCEEEc
Q 046050 312 ALSNNSLQGHIFSRSFNLTNLVTLQL 337 (779)
Q Consensus 312 ~ls~n~l~~~~~~~~~~l~~L~~L~l 337 (779)
+++.|.++......|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888777778888888888764
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2.8e-16 Score=164.67 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=181.5
Q ss_pred CCCccEEEccccccccccchhhcC-CCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccC------
Q 046050 32 FTNLEVLILDGSALHIRFLQSIAV-LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVN------ 104 (779)
Q Consensus 32 l~~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------ 104 (779)
+.+++.|.++++ +.......+.. +++|++|||++|++..... .-+.++.++.+.+..|.| .+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~--~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG--KAGTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE--SSSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC--cccccccccccccccccc---CHHHhcccccccc
Confidence 445666666653 22222233333 5667777777776641100 011222234444444422 2345555
Q ss_pred --CCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCcc
Q 046050 105 --MTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQ 182 (779)
Q Consensus 105 --l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (779)
|++|+.|+|.+ .++ .|+..+|.++++|+.+++++|.++ .++..+|.++ .+
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~-------------------------~~ 149 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADS-------------------------VT 149 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTT-------------------------TC
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCC-------------------------Cc
Confidence 77777777777 666 677667777777777777777665 3443444443 34
Q ss_pred ccEEECCCCc----CCCCcchhhhCCCCCC-EEEccCCCCCCcCchhhhhc---CCCCCEEECcCCcccccCCCCCCCCC
Q 046050 183 LQNISLSGCR----CDFTFPRFLYYQHELR-YVDLSHMNLRGEFPNWLLEN---NKELETLLLANNSLSGFFQMPVNPLK 254 (779)
Q Consensus 183 L~~L~L~~n~----~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~~~~~~~~---~~~L~~L~L~~n~~~~~~~~~l~~l~ 254 (779)
+..+...... ........|..+..|+ .+.+... +.++..++.. ..+++.+.+.++-...........++
T Consensus 150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~ 226 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMP 226 (329)
T ss_dssp EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred eEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcC
Confidence 4444443321 1112234456667777 5666543 2455555433 34567777766532211110112378
Q ss_pred CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCcccc-EEEccCCcCCccccccccCCCCCC
Q 046050 255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQ-ILALSNNSLQGHIFSRSFNLTNLV 333 (779)
Q Consensus 255 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~ 333 (779)
+|+.+++++|.++ .+|...|..+++|+.+++.+| ++...+ ..+.+|.+|+ .+++.+ .++...+..|.++++|+
T Consensus 227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~---~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQ---RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehH---HHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 9999999999999 999999998999999999998 653333 3346777999 999998 78877788999999999
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEc
Q 046050 334 TLQLDANQFTGGIPENLLNCSLLGGLYL 361 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L 361 (779)
.++++.|.+....+.+|.++++|+.++.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999999777889999999999864
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=7.9e-16 Score=148.15 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=41.6
Q ss_pred cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCc-cCCCcchhhhCCCCCceEEc
Q 046050 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH-ISGKIPKWLGNLSNLVDIIM 385 (779)
Q Consensus 307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L 385 (779)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI 166 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence 33333333333333333333344444444444444443333344444444444444443 32 222 2444444444444
Q ss_pred cCCCCCCCcchhhcCCCCCCEEEccCccC
Q 046050 386 PNNHLEGPIPANLCKLNFLTVLDLEVNNI 414 (779)
Q Consensus 386 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 414 (779)
++|.+++. + .+..+++|+.|++++|++
T Consensus 167 ~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 167 QFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred CCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 44444421 1 334444444444444443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=145.30 Aligned_cols=92 Identities=24% Similarity=0.206 Sum_probs=81.2
Q ss_pred cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEE
Q 046050 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFS 656 (779)
Q Consensus 577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 656 (779)
++.|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45677778888888777777899999999999999999988888999999999999999999977777899999999999
Q ss_pred ccCCcCcccCCC
Q 046050 657 VAHNNLSGKVPD 668 (779)
Q Consensus 657 ls~N~l~~~~p~ 668 (779)
+++|++.|.++-
T Consensus 133 L~~N~~~C~c~l 144 (193)
T 2wfh_A 133 IGANPLYCDCNM 144 (193)
T ss_dssp CCSSCEECSGGG
T ss_pred eCCCCeecCCcC
Confidence 999999987763
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=6.2e-16 Score=156.03 Aligned_cols=168 Identities=22% Similarity=0.249 Sum_probs=105.1
Q ss_pred cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386 (779)
Q Consensus 307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 386 (779)
++..++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 5566666777666432 3556667777777777666 333 45666666666666666664433 6666666666666
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchh
Q 046050 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW 466 (779)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 466 (779)
+|++++. +. +.. ++|+.|++++|++++. +....+++ |+.|++++|++++. + .
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~----------------------L~~L~Ls~N~i~~~-~-~ 145 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-DSLIHLKN----------------------LEILSIRNNKLKSI-V-M 145 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-GGGTTCTT----------------------CCEEECTTSCCCBC-G-G
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC-hhhcCccc----------------------ccEEECCCCcCCCC-h-H
Confidence 6666532 22 122 5555566655555532 22222333 55666666666543 3 5
Q ss_pred hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 046050 467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT 510 (779)
Q Consensus 467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 510 (779)
+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 77788888888888888865 5678888888888888888743
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.6e-16 Score=183.66 Aligned_cols=188 Identities=22% Similarity=0.233 Sum_probs=90.1
Q ss_pred CCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCC
Q 046050 402 NFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481 (779)
Q Consensus 402 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 481 (779)
+.++.|++.+|.+...... .++.++|+.|.+. .++++.|.+. ..+..+..+++|+.|+|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-----~l~~l~Ls~~~i~------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-----LLQHKKLSQYSID------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNL 234 (727)
T ss_dssp -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred CccceEEeeCCCCCcchhh-----HhhcCccCccccc------------Ccccccccee-cChhhhccCCCCcEEECCCC
Confidence 5577788887777653222 2444555555443 2344445444 44566666777777777777
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceE
Q 046050 482 NLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESV 561 (779)
Q Consensus 482 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (779)
++. .+|..+..+++|++|+|++|.++ .+|..+
T Consensus 235 ~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~---------------------------------------------- 266 (727)
T 4b8c_D 235 QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI---------------------------------------------- 266 (727)
T ss_dssp CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG----------------------------------------------
T ss_pred CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh----------------------------------------------
Confidence 766 44545556777777777777776 566554
Q ss_pred EEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCC
Q 046050 562 EFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641 (779)
Q Consensus 562 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 641 (779)
..+++|+.|||++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..|+++++|+.|+|++|++++.
T Consensus 267 -------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 267 -------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp -------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred -------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 11456677777777777 66777777777777777777776 5566677777777777777777776
Q ss_pred Cchhhhhccc-CcEEEccCCcCcccCCCCC
Q 046050 642 IPTQLVELYA-LAIFSVAHNNLSGKVPDRV 670 (779)
Q Consensus 642 ~p~~l~~l~~-L~~L~ls~N~l~~~~p~~~ 670 (779)
+|..+..+.. +..+++++|.++|.+|..+
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred ChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 6666654422 2235666666666666543
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=3.2e-16 Score=181.07 Aligned_cols=220 Identities=20% Similarity=0.211 Sum_probs=107.8
Q ss_pred CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCC
Q 046050 254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV 333 (779)
Q Consensus 254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 333 (779)
++++.|++.+|.+. .++. ..++.++|+.|.+ ..++++.|.+. ..+..+..++.|+
T Consensus 173 ~~~~~l~L~~n~~~-~~~~------~~l~~l~Ls~~~i-----------------~~~~~~~n~~~-~~~~~~~~l~~L~ 227 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQ------ALLQHKKLSQYSI-----------------DEDDDIENRMV-MPKDSKYDDQLWH 227 (727)
T ss_dssp --------------------------------------------------------------------------CCCCCC
T ss_pred CccceEEeeCCCCC-cchh------hHhhcCccCcccc-----------------cCcccccccee-cChhhhccCCCCc
Confidence 44566666666665 3332 2344445555533 33344445544 4566677788888
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc
Q 046050 334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN 413 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 413 (779)
.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.
T Consensus 228 ~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 228 ALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp EEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred EEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC
Confidence 8888888887 66666677888888888888888 67777888888888888888888 668888888888888888888
Q ss_pred CcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc---ceEEEccCccccCcCchhhhcCCCCcEEEccCC--------
Q 046050 414 ISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI---LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-------- 481 (779)
Q Consensus 414 l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------- 481 (779)
++.+ |..+. +++|+.|+|++|.+++.++..+... ...+++++|.+++.+|. .|+.|++++|
T Consensus 305 l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 305 VTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYD 377 (727)
T ss_dssp CCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------
T ss_pred CCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccC
Confidence 8744 44444 7788888888888888877776543 34578888988887765 4556667666
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCc
Q 046050 482 NLEGEVPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 482 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
.+.+..+..+..+..+....+++|-+.
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------CCC
T ss_pred Cccccccchhhcccccceeeeeccccc
Confidence 344444445566667777778888775
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.5e-15 Score=142.07 Aligned_cols=137 Identities=23% Similarity=0.222 Sum_probs=105.9
Q ss_pred CCCCcEEEccCCcCc-ccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccC
Q 046050 470 LSHLSYLILANNNLE-GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVS 548 (779)
Q Consensus 470 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (779)
.++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--------------------------------- 67 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--------------------------------- 67 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC---------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh---------------------------------
Confidence 367888888888877 56677777788888888888887642 211
Q ss_pred CCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccC-chhhhCCCC
Q 046050 549 PSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTI-PSTFSHLSQ 627 (779)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~ 627 (779)
..++.|+.|++++|++++.+|..+..+++|+.|++++|.+++.. +..+..+++
T Consensus 68 --------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 68 --------------------------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp --------------------------CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred --------------------------ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 11467788888888888767777777899999999999998543 278889999
Q ss_pred CCEEECCCCcCcCCCc---hhhhhcccCcEEEccCCcCcccCCC
Q 046050 628 IESLDLSYNMLQGKIP---TQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 628 L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
|+.|++++|++++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999999986665 57888999999999999887 4444
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=2.9e-15 Score=141.51 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=102.4
Q ss_pred cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEE
Q 046050 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFS 656 (779)
Q Consensus 577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 656 (779)
.+.++.|++++|++++..+..++.+++|+.|++++|++++..+..|.++++|+.|++++|++++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35688999999999977777889999999999999999977778889999999999999999988888889999999999
Q ss_pred ccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 657 VAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 657 ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
+++|++++..+..+..+..++.+.+.+|++.|.++
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999997666666778899999999999999875
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=6.5e-14 Score=149.64 Aligned_cols=270 Identities=13% Similarity=0.091 Sum_probs=144.4
Q ss_pred CCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcE
Q 046050 81 LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK 160 (779)
Q Consensus 81 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 160 (779)
+..++.+.+.. .++.+...+|.++ +|+.+++..+ ++ .|+..+|.+. +|+.+.+.. .++ .+...+|.+|++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 46677777754 3555666677775 6888887766 65 6777677763 677777765 333 222233333333333
Q ss_pred EECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050 161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240 (779)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 240 (779)
+++..|.+.......|. +.+|+.+.+..+ ++ .++...|.++++|+.+.+..+
T Consensus 185 -------------------------l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 185 -------------------------ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp -------------------------EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT
T ss_pred -------------------------eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC
Confidence 33333333222222222 345555555432 33 444444555555555555543
Q ss_pred cccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCc
Q 046050 241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320 (779)
Q Consensus 241 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 320 (779)
++.+...+|.. .+|+.+++. +.++ .++...|..+++|+.+.+.+|.+... ....
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~----------------------~~~~ 290 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDD----------------------PEAM 290 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCC----------------------TTCE
T ss_pred -ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCC----------------------cccE
Confidence 44444445544 455555553 3344 45555555455555555555443210 0011
Q ss_pred cccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcC
Q 046050 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK 400 (779)
Q Consensus 321 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 400 (779)
.....|.++++|+.+++.+ .+......+|.+|++|+.+.+..+ ++...+.+|.++ +|+.+++.+|......+..|.+
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 2334455566666666663 344444556666666666666444 444455666666 6777777776666555566666
Q ss_pred CC-CCCEEEccCccC
Q 046050 401 LN-FLTVLDLEVNNI 414 (779)
Q Consensus 401 l~-~L~~L~L~~n~l 414 (779)
++ .++.|.+..+.+
T Consensus 368 ~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 368 FPDDITVIRVPAESV 382 (401)
T ss_dssp SCTTCCEEEECGGGH
T ss_pred CCCCccEEEeCHHHH
Confidence 63 566777666554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.7e-15 Score=137.29 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=96.2
Q ss_pred CCCcEEEccCCcCc-ccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 046050 471 SHLSYLILANNNLE-GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSP 549 (779)
Q Consensus 471 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (779)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~---------------------------------- 60 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL---------------------------------- 60 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC----------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh----------------------------------
Confidence 56777777777776 56666777777788888877777642 111
Q ss_pred CCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCcc-CchhhhCCCCC
Q 046050 550 SGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGT-IPSTFSHLSQI 628 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 628 (779)
..++.|+.|++++|.+++.+|..+..+++|+.|++++|++++. .|..+..+++|
T Consensus 61 -------------------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 61 -------------------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp -------------------------CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred -------------------------hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 0145677788888887766777777788889999999988864 34778888999
Q ss_pred CEEECCCCcCcCCCc---hhhhhcccCcEEEccC
Q 046050 629 ESLDLSYNMLQGKIP---TQLVELYALAIFSVAH 659 (779)
Q Consensus 629 ~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~ 659 (779)
+.|++++|++++..+ ..+..+++|++||+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999887666 5788888999888864
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2.2e-15 Score=141.04 Aligned_cols=109 Identities=25% Similarity=0.329 Sum_probs=56.7
Q ss_pred CCCccEEEccccccc-cccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCE
Q 046050 32 FTNLEVLILDGSALH-IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRI 110 (779)
Q Consensus 32 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 110 (779)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 345555555555554 34444455555555555555555433 24555555555555555555445555555555555
Q ss_pred EeCCCCcCcccCCc-hhhcCCCCCCEEEccccccc
Q 046050 111 LDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQ 144 (779)
Q Consensus 111 L~Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~ 144 (779)
|++++|+++ .++. ..+..+++|++|++++|.++
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc
Confidence 555555555 3331 24555555555555555544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=8e-15 Score=138.46 Aligned_cols=91 Identities=22% Similarity=0.201 Sum_probs=70.6
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV 657 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 657 (779)
+.|++|++++|++++..+..++.+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 45566666666666555556777888888888888888777777888888888888888888666666788888888888
Q ss_pred cCCcCcccCCC
Q 046050 658 AHNNLSGKVPD 668 (779)
Q Consensus 658 s~N~l~~~~p~ 668 (779)
++|+++|.+|.
T Consensus 132 ~~N~~~~~~~~ 142 (177)
T 2o6r_A 132 HTNPWDCSCPR 142 (177)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCeeccCcc
Confidence 88888887764
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=8.4e-14 Score=148.80 Aligned_cols=264 Identities=13% Similarity=0.126 Sum_probs=189.2
Q ss_pred hCCCCCCcEEeCCCCcc-----ccCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCc
Q 046050 11 WTPFPNLETLELRDYHL-----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQ 85 (779)
Q Consensus 11 ~~~~~~L~~L~Ls~~~~-----~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (779)
+.-+..++.+.+...-- +|.+. +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++..+|..|++|+
T Consensus 109 ~~~~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence 44456667776655332 34443 6777777665 555666677764 688888876 443 33334677788888
Q ss_pred EEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcC
Q 046050 86 ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165 (779)
Q Consensus 86 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 165 (779)
.++++.|+++.....+|. +.+|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ++ .+...+|.+ .+|+.+.+..
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC
Confidence 888888877766666666 578888888744 65 677777888888888888765 33 455566666 6788777744
Q ss_pred CceeeecccCCCCCCccccEEECCCCcCC-----CCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050 166 NRLFVEIESHSLTPKFQLQNISLSGCRCD-----FTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240 (779)
Q Consensus 166 ~~l~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 240 (779)
+ ...++..+|..+.+|+.+.+.++.+. ...+..|..+++|+.+++. +.++ .++...|.++++|+.+.+..+
T Consensus 258 ~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 258 G--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp T--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT
T ss_pred C--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc
Confidence 3 24567777888888888888777654 3456788899999999998 4576 777777889999999999655
Q ss_pred cccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCC-CCCEEEccCCcCC
Q 046050 241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLP-RLEHFNISRNVLN 292 (779)
Q Consensus 241 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~-~L~~L~l~~n~l~ 292 (779)
++.+...+|..+ +|+.+++++|.+. .++...|..++ .++.|.+..+.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHHH
Confidence 777888899999 9999999999887 66666665554 6888888776543
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=2e-13 Score=146.79 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=134.6
Q ss_pred cCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCC
Q 046050 174 SHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPL 253 (779)
Q Consensus 174 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 253 (779)
..+|..+.+|+.+.+..+. .......|..+.+|+.+++..+ ++ .++...|.++..|+.+.+..+... ........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhccc
Confidence 3445555555555554332 2223345555666666666544 33 445555566666666665554322 11223334
Q ss_pred CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCC
Q 046050 254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV 333 (779)
Q Consensus 254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 333 (779)
.+|+.+.+... ++ .+....+..+..++.+.+..+... ... ..+..+..++.+......+. ...+..+.+|+
T Consensus 230 ~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~---~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~ 300 (394)
T 4fs7_A 230 TGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGG---SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLT 300 (394)
T ss_dssp CCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECS---CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCC
T ss_pred CCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eec---cccccccccceeccCceeec---ccccccccccc
Confidence 56666666543 22 344445555666666666554322 111 22234446666666554432 23455677788
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc
Q 046050 334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN 413 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 413 (779)
.+.+..+ +......+|.++++|+.+++..+ ++.....+|.++++|+.+.+..+ ++.....+|.++++|+.+++..+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~- 376 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR- 376 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence 8877655 44355567778888888888644 55455677888888888888766 55556677888888888888654
Q ss_pred CcccCCcCcC-CCcccEE
Q 046050 414 ISGSLPSCFS-SWLLTQV 430 (779)
Q Consensus 414 l~~~~~~~~~-~~~L~~L 430 (779)
+... ...|. +.+|+.+
T Consensus 377 ~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGG-GGGBCTTCEEEEE
T ss_pred CEEh-hheecCCCCCcEE
Confidence 2212 23343 6666554
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=2.3e-13 Score=146.30 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=145.6
Q ss_pred chhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhc
Q 046050 198 PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF 277 (779)
Q Consensus 198 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~ 277 (779)
..+|.++++|+.+.+..+. . .++...|.++++|+.+.+..+ ++.+....|..+..|+.+.+..+.. .+....+.
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~- 228 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALS- 228 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTT-
T ss_pred hhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhcc-
Confidence 4567777888888886543 3 566666777888888888765 5566667777888888877766543 23333443
Q ss_pred CCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCC
Q 046050 278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLG 357 (779)
Q Consensus 278 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 357 (779)
...|+.+.+.... +.... ..+.+|..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+
T Consensus 229 ~~~l~~i~ip~~~-~~i~~---~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~ 300 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGK---SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLT 300 (394)
T ss_dssp TCCCCEEEECTTC-CEECS---STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCC
T ss_pred cCCCceEEECCCc-eeccc---ccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccc
Confidence 4577777765432 11111 23345567788877766443 4455666777787777766543 234577778888
Q ss_pred EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCC
Q 046050 358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRN 435 (779)
Q Consensus 358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n 435 (779)
.+.+..+ ++.....+|.++++|+.+++.++ ++.....+|.++.+|+.+++..+ ++.+...+|. +.+|+.+++..+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8888654 44455667888888888888654 55455677888888888888766 6656666776 678888887654
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=1.8e-14 Score=134.73 Aligned_cols=91 Identities=23% Similarity=0.200 Sum_probs=81.1
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV 657 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 657 (779)
+.++.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 56788999999999888888999999999999999999877788899999999999999999877778999999999999
Q ss_pred cCCcCcccCCC
Q 046050 658 AHNNLSGKVPD 668 (779)
Q Consensus 658 s~N~l~~~~p~ 668 (779)
++|+++|.++.
T Consensus 110 ~~N~~~c~c~~ 120 (170)
T 3g39_A 110 LNNPWDCACSD 120 (170)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCCCCCchh
Confidence 99999988764
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=2.8e-14 Score=133.32 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=100.5
Q ss_pred eeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccC
Q 046050 580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH 659 (779)
Q Consensus 580 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 659 (779)
.+.+|+++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467999999999 6777664 8999999999999998899999999999999999999988888889999999999999
Q ss_pred CcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 660 NNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 660 N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
|++++..|..+..+..++.+.+++||+.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99998877778899999999999999999985
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=6.1e-14 Score=131.47 Aligned_cols=91 Identities=23% Similarity=0.201 Sum_probs=77.9
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV 657 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 657 (779)
+.++.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 46788999999999888888999999999999999998776777888999999999999998766667888999999999
Q ss_pred cCCcCcccCCC
Q 046050 658 AHNNLSGKVPD 668 (779)
Q Consensus 658 s~N~l~~~~p~ 668 (779)
++|++.+.++.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999877653
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5.4e-14 Score=128.55 Aligned_cols=125 Identities=24% Similarity=0.194 Sum_probs=89.2
Q ss_pred cccEEEccCCcCC-ccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEc
Q 046050 307 SLQILALSNNSLQ-GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIM 385 (779)
Q Consensus 307 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 385 (779)
+++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 6777777777776 55666667777788888888877744 56777778888888888887667777777788888888
Q ss_pred cCCCCCCC-cchhhcCCCCCCEEEccCccCcccCC---cCcC-CCcccEEEcc
Q 046050 386 PNNHLEGP-IPANLCKLNFLTVLDLEVNNISGSLP---SCFS-SWLLTQVHLS 433 (779)
Q Consensus 386 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~-~~~L~~L~l~ 433 (779)
++|.+++. .+..+..+++|+.|++++|++++..+ ..+. +++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88887753 33667777888888888887776554 2333 6667776654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=8.8e-16 Score=147.95 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=105.7
Q ss_pred ceEEEccCccccCcCch------hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050 449 LVTLDLSYNRFSGRIPN------WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE 522 (779)
Q Consensus 449 L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 522 (779)
++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~------ 90 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA------ 90 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH------
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh------
Confidence 55566666666655554 77888888888888888875 45 7777888888888888887 5555431
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcc
Q 046050 523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN 602 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 602 (779)
.++.|+.|++++|++++ +| .+..++
T Consensus 91 -----------------------------------------------------~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 91 -----------------------------------------------------VADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp -----------------------------------------------------HHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred -----------------------------------------------------cCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 14677788888888874 44 577778
Q ss_pred cCcEEEcCCCcCCccCc-hhhhCCCCCCEEECCCCcCcCCCchh----------hhhcccCcEEEccCCcCc
Q 046050 603 MIRALNLSHNNLMGTIP-STFSHLSQIESLDLSYNMLQGKIPTQ----------LVELYALAIFSVAHNNLS 663 (779)
Q Consensus 603 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 663 (779)
+|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|++|| +|+++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888888874333 46777888888888888887665542 67777787776 66655
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=7.3e-14 Score=130.94 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=98.9
Q ss_pred eEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050 581 FGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660 (779)
Q Consensus 581 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 660 (779)
+.+++++|+++ .+|..+. ++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57999999998 7787765 89999999999999988999999999999999999999877777899999999999999
Q ss_pred cCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 661 NLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 661 ~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
++++..+..+..+..++.+.+.+|++.|.|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9997777668889999999999999999875
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.3e-14 Score=131.63 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=98.0
Q ss_pred hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccc
Q 046050 467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA 546 (779)
Q Consensus 467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (779)
+.++++|+.|++++|+++.. |......++|++|++++|++++. ..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l------------------------------- 60 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGF------------------------------- 60 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCC-------------------------------
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccc-------------------------------
Confidence 45667788888888887743 44333334788888888887642 111
Q ss_pred cCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCch--hhhC
Q 046050 547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS--TFSH 624 (779)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~ 624 (779)
..++.|+.|++++|++++..+..+..+++|+.|++++|+++ .+|. .+..
T Consensus 61 ----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~ 111 (176)
T 1a9n_A 61 ----------------------------PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLAS 111 (176)
T ss_dssp ----------------------------CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGG
T ss_pred ----------------------------ccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhc
Confidence 11466788888888888554455588899999999999996 4565 7888
Q ss_pred CCCCCEEECCCCcCcCCCch----hhhhcccCcEEEccCCcCcc
Q 046050 625 LSQIESLDLSYNMLQGKIPT----QLVELYALAIFSVAHNNLSG 664 (779)
Q Consensus 625 l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~ls~N~l~~ 664 (779)
+++|+.|++++|+++ .+|. .+..+++|++||+++|+...
T Consensus 112 l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 112 LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999999998 4555 48889999999999998763
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.3e-13 Score=129.98 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=76.5
Q ss_pred cCCCCCccEEEccccccccccchhhcCCC-CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCC
Q 046050 29 LLNFTNLEVLILDGSALHIRFLQSIAVLT-SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTS 107 (779)
Q Consensus 29 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 107 (779)
+.++++|++|++++|+++.. +. +..+. +|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 33455566666666655532 22 33333 666666666666543 24666666666666666666544444566666
Q ss_pred CCEEeCCCCcCcccCCc-hhhcCCCCCCEEEcccccccccCCcc---cccCCCCCcEEECcCCcee
Q 046050 108 LRILDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQIPISFE---PFFNHSKLKKFYGQKNRLF 169 (779)
Q Consensus 108 L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~l~~L~~L~l~~~~l~ 169 (779)
|++|++++|+++ .+|. ..+..+++|++|++++|.++ .++.. .+..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666665 4543 24556666666666666665 23322 3556666666666666543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.8e-15 Score=145.77 Aligned_cols=138 Identities=21% Similarity=0.214 Sum_probs=119.6
Q ss_pred hhcCCCCcEEEccCCcCcccCcc------cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCC
Q 046050 467 IDKLSHLSYLILANNNLEGEVPV------QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASS 540 (779)
Q Consensus 467 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (779)
+.....++.++++++.+.+..|. .+..+++|++|++++|++++ +| .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~------------------------- 66 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL------------------------- 66 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH-------------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc-------------------------
Confidence 55677888889999998887776 89999999999999999985 66 33
Q ss_pred cccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCch
Q 046050 541 PAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS 620 (779)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 620 (779)
..++.|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|
T Consensus 67 ----------------------------------~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~- 109 (198)
T 1ds9_A 67 ----------------------------------SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS- 109 (198)
T ss_dssp ----------------------------------HHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-
T ss_pred ----------------------------------ccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-
Confidence 12578999999999999 788888889999999999999996 55
Q ss_pred hhhCCCCCCEEECCCCcCcCCCc-hhhhhcccCcEEEccCCcCcccCCC
Q 046050 621 TFSHLSQIESLDLSYNMLQGKIP-TQLVELYALAIFSVAHNNLSGKVPD 668 (779)
Q Consensus 621 ~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~ 668 (779)
.+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 68999999999999999985433 5789999999999999999998876
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=9.4e-11 Score=125.79 Aligned_cols=132 Identities=13% Similarity=0.141 Sum_probs=60.2
Q ss_pred CccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CC
Q 046050 347 PENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SW 425 (779)
Q Consensus 347 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~ 425 (779)
..+|.++..|+.+.+..+..+ ....+|.++++|+.+.+.. .++.....+|.++.+|+.+++..+ ++.+...+|. +.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 344555556666655544332 3344555556666655542 333334445555666666665432 3334444444 44
Q ss_pred cccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050 426 LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN 505 (779)
Q Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 505 (779)
+|+.+.+..+ ++ ......|.++++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 335 ~L~~i~ip~s-v~----------------------~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 335 QLERIAIPSS-VT----------------------KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEECTT-CC----------------------BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CCCEEEECcc-cC----------------------EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 4554444322 22 2333455666666666666554321 23455566666665555
Q ss_pred cC
Q 046050 506 NL 507 (779)
Q Consensus 506 ~l 507 (779)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2e-12 Score=136.50 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=82.1
Q ss_pred EEeccCC-ccCCCCCccccCcccCcEEEcCC-CcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccC
Q 046050 582 GLDLSCN-KLTGEIPFQIGYLNMIRALNLSH-NNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH 659 (779)
Q Consensus 582 ~LdLs~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 659 (779)
.++++++ +++ .+|. +..+++|+.|+|++ |.|++..|..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 777 5676 88888888888885 888877777788888888888888888887777888888888888888
Q ss_pred CcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050 660 NNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691 (779)
Q Consensus 660 N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~ 691 (779)
|+|++..|..+..+. ++.+.+.+|++.|.|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 888866555544444 7777788888888775
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=1.1e-10 Score=125.33 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=85.8
Q ss_pred ccchhhcCCC-CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcc---cccccChhccCCCCCCEEeCCCCcCcccCC
Q 046050 48 RFLQSIAVLT-SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN---IGGTLPWCLVNMTSLRILDIASNQITGNIS 123 (779)
Q Consensus 48 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~ 123 (779)
+...+|.+++ .|+.+.+..+ +. .+...+|.++.+|+.+.++.|. ++.+...+|..+.+|+.+.+..+ ++ .++
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~ 129 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EID 129 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EEC
T ss_pred cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eeh
Confidence 3345566653 4777777654 32 3333466677777777776553 55555566777777776666544 34 555
Q ss_pred chhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhC
Q 046050 124 SSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYY 203 (779)
Q Consensus 124 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 203 (779)
..+|..+.+|+.+.+..+.- .+....|..+..|+.+.+..+- ..+...+|.. ..|+.+.+..+- .......+..
T Consensus 130 ~~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~ 203 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDSV--TAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSE 203 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTC--CEECTTTTTT-CCCSEEEECTTC-CEECTTTTTT
T ss_pred hhhhhhhcccccccccceee--eecccceeccccccccccccee--eEeccccccc-cceeEEEECCcc-cccccchhhh
Confidence 55667777777777765422 3444556666666666665442 2333334432 345555554331 1122344445
Q ss_pred CCCCCEEEccCC
Q 046050 204 QHELRYVDLSHM 215 (779)
Q Consensus 204 ~~~L~~L~Ls~n 215 (779)
+.+++.......
T Consensus 204 c~~l~~~~~~~~ 215 (394)
T 4gt6_A 204 CFALSTITSDSE 215 (394)
T ss_dssp CTTCCEEEECCS
T ss_pred ccccceeccccc
Confidence 555555554433
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=4e-12 Score=134.15 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=92.2
Q ss_pred cceeeEEeccC-CccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEE
Q 046050 577 LKIMFGLDLSC-NKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIF 655 (779)
Q Consensus 577 l~~L~~LdLs~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 655 (779)
+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 45799999996 999988889999999999999999999999999999999999999999999977777777666 9999
Q ss_pred EccCCcCcccCCCCCCcCCCC---CCCcccCCCCCCCCC
Q 046050 656 SVAHNNLSGKVPDRVGQFATF---TENSYDGNSLLCGQP 691 (779)
Q Consensus 656 ~ls~N~l~~~~p~~~~~~~~l---~~~~~~~N~~lc~~~ 691 (779)
++++|++.|.++- .+|..+ ....+..+...|..+
T Consensus 109 ~l~~N~~~c~c~l--~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGG--HHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCcc--HHHHHHHHhCcccccccCCCCCCC
Confidence 9999999987763 233222 222345566677654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.6e-12 Score=137.50 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=32.4
Q ss_pred cccCcccCcEEEcCCCcCCcc----CchhhhCCCCCCEEECCCCcCcCCCchhhhhc
Q 046050 597 QIGYLNMIRALNLSHNNLMGT----IPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL 649 (779)
Q Consensus 597 ~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 649 (779)
.+...++|+.|+|++|.|++. ++..+...++|++|||++|.|+......+..+
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 344456677777777777643 33444556777777777777765544455443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=7.9e-13 Score=139.86 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=59.5
Q ss_pred CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-ccc-cCCccccEEEccCCcCCcc----cccccc
Q 046050 254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMT-MGCFSLQILALSNNSLQGH----IFSRSF 327 (779)
Q Consensus 254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~-~~~~~L~~L~ls~n~l~~~----~~~~~~ 327 (779)
++|++|++++|.+++.....+...+++|+.|++++|.++......+ ... ..+++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555555555555422222222223455555555555543222222 111 1223455555555555432 222233
Q ss_pred CCCCCCEEEccCCcCcccc----CccccCCCCCCEEEccCCccCCC----cchhhhCCCCCceEEccCCCCC
Q 046050 328 NLTNLVTLQLDANQFTGGI----PENLLNCSLLGGLYLSDNHISGK----IPKWLGNLSNLVDIIMPNNHLE 391 (779)
Q Consensus 328 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~ 391 (779)
..++|++|++++|.+++.. +..+...++|++|+|++|.+++. ++..+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4555555555555554321 22333444555555555555431 1222333444555555555444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=2.7e-08 Score=106.08 Aligned_cols=148 Identities=15% Similarity=0.197 Sum_probs=68.1
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCcccc
Q 046050 230 KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQ 309 (779)
Q Consensus 230 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 309 (779)
..+..+.+... ........+..+.+|+.+.+..+ +. .+....+..+..|+.+.+..+ ++.... ..+.+|.+|+
T Consensus 194 ~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~---~aF~~~~~l~ 266 (379)
T 4h09_A 194 KTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGS---FLLQNCTALK 266 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECT---TTTTTCTTCC
T ss_pred ccccccccccc-eeEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCc---cccceeehhc
Confidence 34444444332 22233445566666777766544 33 444555544566666665443 221111 1122333455
Q ss_pred EEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050 310 ILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386 (779)
Q Consensus 310 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 386 (779)
.+.+..+ ++......|.++++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+.+.
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 5444322 22233334445555555555555544334445555555555555432 332333445555555555444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=3.9e-08 Score=104.79 Aligned_cols=140 Identities=15% Similarity=0.043 Sum_probs=61.0
Q ss_pred ccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCccc
Q 046050 350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLT 428 (779)
Q Consensus 350 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~ 428 (779)
+..+.+++.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|. +.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444444444332 11122334444444444444433 22233344444445555544322 2223333333 44444
Q ss_pred EEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCC
Q 046050 429 QVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLL 494 (779)
Q Consensus 429 ~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 494 (779)
.+.+.++.++.+...+|..+ |+.+++..+ ++.....+|.++++|+.+.+..+ ++.+...+|.++
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 44444444444433334332 444444322 33233455666666766666543 444445555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=3.6e-08 Score=103.09 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=51.6
Q ss_pred hhCCCCCCEEEccCCCCC---------CcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCc
Q 046050 201 LYYQHELRYVDLSHMNLR---------GEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIP 271 (779)
Q Consensus 201 l~~~~~L~~L~Ls~n~l~---------~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~ 271 (779)
...+++|+.|.+...... +.+. .++..+|+|+.|.+++|.-... + .+ .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHH
Confidence 455678888888654321 1233 3346778899999988731121 2 23 37888888888887763322
Q ss_pred hhhh-hcCCCCCEEEccC
Q 046050 272 TGIG-AFLPRLEHFNISR 288 (779)
Q Consensus 272 ~~~~-~~l~~L~~L~l~~ 288 (779)
..+. ..+|+|+.|+|+.
T Consensus 211 ~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHSBCTTCCEEEEEC
T ss_pred HHHHHccCCCCcEEEEec
Confidence 2333 1378888888753
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=2.7e-08 Score=103.98 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=44.3
Q ss_pred CCcccEEEccCCcCcccchhhHh-----hcceEEEccCccccCc----CchhhhcCCCCcEEEccCCcCcccCcccccC-
Q 046050 424 SWLLTQVHLSRNKIEGQLEDVFG-----DILVTLDLSYNRFSGR----IPNWIDKLSHLSYLILANNNLEGEVPVQLCL- 493 (779)
Q Consensus 424 ~~~L~~L~l~~n~l~~~~~~~~~-----~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 493 (779)
+++|+.|++.+|.+.......+. +.|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45666666666666543322222 1266666666666542 2223345677777777777776443333332
Q ss_pred CCCCCEEEccCCc
Q 046050 494 LKQLQLIDLSHNN 506 (779)
Q Consensus 494 l~~L~~L~Ls~N~ 506 (779)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456776665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=4e-08 Score=92.57 Aligned_cols=91 Identities=26% Similarity=0.165 Sum_probs=44.8
Q ss_pred hcCCCCcCEEECCCCCCcccCC---cccccCCCCCcEEEccCcccccc----cChhccCCCCCCEEeC--CCCcCccc--
Q 046050 53 IAVLTSVKHLSMRNCYLYGTSD---FQGLCELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDI--ASNQITGN-- 121 (779)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L--s~n~i~~~-- 121 (779)
+...++|++|+|++|.+...-. .+.+...++|++|+|++|.|+.. +..++...+.|++|+| ++|.|...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3444555555555555421100 01233345555666666655542 3344555566666666 55666521
Q ss_pred --CCchhhcCCCCCCEEEccccccc
Q 046050 122 --ISSSPLRYLTSLEELRVSNNQFQ 144 (779)
Q Consensus 122 --i~~~~~~~l~~L~~L~Ls~n~l~ 144 (779)
+.. .+...+.|++|++++|.+.
T Consensus 141 ~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHHhCCCcCEEeccCCCCC
Confidence 112 3344466666666666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.3e-07 Score=89.11 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=27.5
Q ss_pred hhhhcCCCCcEEEccCC-cCccc----CcccccCCCCCCEEEccCCcCc
Q 046050 465 NWIDKLSHLSYLILANN-NLEGE----VPVQLCLLKQLQLIDLSHNNLS 508 (779)
Q Consensus 465 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 508 (779)
..+...++|++|+|++| .+... +...+...++|++|+|++|++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34555677777777777 66532 2344455667777777777765
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=4.3e-07 Score=89.79 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=37.7
Q ss_pred CcccCcEEEcCCCcCCc--cCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc--cCcEEEccCCcCcccCC
Q 046050 600 YLNMIRALNLSHNNLMG--TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY--ALAIFSVAHNNLSGKVP 667 (779)
Q Consensus 600 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p 667 (779)
.+++|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 35566666666666665 2345555666666666666666643 2233333 66666666666665554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=2.4e-07 Score=91.57 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=50.2
Q ss_pred cceeeEEeccCCccCC--CCCccccCcccCcEEEcCCCcCCccCchhhhCCC--CCCEEECCCCcCcCCCc-------hh
Q 046050 577 LKIMFGLDLSCNKLTG--EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLS--QIESLDLSYNMLQGKIP-------TQ 645 (779)
Q Consensus 577 l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------~~ 645 (779)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|++.+.+| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5667777777777775 3345556677777777777777754 2233343 77777777777776554 23
Q ss_pred hhhcccCcEEE
Q 046050 646 LVELYALAIFS 656 (779)
Q Consensus 646 l~~l~~L~~L~ 656 (779)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55667776665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.7e-06 Score=77.78 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=41.8
Q ss_pred CcCEEECCCCCCcccCCcccccCCCCCcEEEccCc-ccccccChhccCC----CCCCEEeCCCCc-CcccCCchhhcCCC
Q 046050 58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYN-NIGGTLPWCLVNM----TSLRILDIASNQ-ITGNISSSPLRYLT 131 (779)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~i~~~~~~~l~ 131 (779)
.|++||+++|.++.. ....+..+++|++|+|++| .|+...-..++.+ ++|++|+|++|. |+..-- ..+..++
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 456666666654322 1224455666666666666 3554333344443 356666666653 442111 1344556
Q ss_pred CCCEEEccccc
Q 046050 132 SLEELRVSNNQ 142 (779)
Q Consensus 132 ~L~~L~Ls~n~ 142 (779)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=4.6e-06 Score=76.21 Aligned_cols=84 Identities=10% Similarity=0.026 Sum_probs=69.2
Q ss_pred ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCc-CCccCchhhhCC----CCCCEEECCCCc-CcCCCchhhhhccc
Q 046050 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNN-LMGTIPSTFSHL----SQIESLDLSYNM-LQGKIPTQLVELYA 651 (779)
Q Consensus 578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 651 (779)
..|+.||++++.++..--..+.++++|+.|+|++|. +++.--..++.+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368999999999987767778899999999999995 776555566665 379999999985 87655567788999
Q ss_pred CcEEEccCCc
Q 046050 652 LAIFSVAHNN 661 (779)
Q Consensus 652 L~~L~ls~N~ 661 (779)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.37 E-value=0.00026 Score=61.63 Aligned_cols=40 Identities=25% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccC
Q 046050 627 QIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKV 666 (779)
Q Consensus 627 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 666 (779)
+|+.|+|++|+|+...+..|..+++|++|+|++|++.+.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 4555555555555444445555555666666666665544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.23 E-value=0.00028 Score=65.64 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=65.8
Q ss_pred CCCCccEEEcccc-cccc----ccchhhcCCCCcCEEECCCCCCcccCC---cccccCCCCCcEEEccCcccccc----c
Q 046050 31 NFTNLEVLILDGS-ALHI----RFLQSIAVLTSVKHLSMRNCYLYGTSD---FQGLCELVHLQELHIGYNNIGGT----L 98 (779)
Q Consensus 31 ~l~~L~~L~L~~~-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~----~ 98 (779)
+-+.|+.|+|+++ .+.. .+..++..-+.|++|+|++|.+...-. .+.+..-+.|++|+|++|.|+.. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456666666664 4432 234555666777777777777742110 12233446677788887777653 3
Q ss_pred ChhccCCCCCCEEeCCCCc---Ccc----cCCchhhcCCCCCCEEEccccccc
Q 046050 99 PWCLVNMTSLRILDIASNQ---ITG----NISSSPLRYLTSLEELRVSNNQFQ 144 (779)
Q Consensus 99 ~~~~~~l~~L~~L~Ls~n~---i~~----~i~~~~~~~l~~L~~L~Ls~n~l~ 144 (779)
.+++..-+.|++|+|++|. +.. .+.. .+..-+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence 3455566678888887653 321 1222 3445577888888877643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.00084 Score=58.35 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=49.5
Q ss_pred eEEeccCCccC-CCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC
Q 046050 581 FGLDLSCNKLT-GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG 640 (779)
Q Consensus 581 ~~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 640 (779)
..+|.++++++ ..+|..+. ++|+.|+|++|+|+...++.|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36899999997 46665543 579999999999998888889999999999999999874
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.83 E-value=0.00084 Score=62.46 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=18.5
Q ss_pred CCCCcEEEccCC---cCcc----cCcccccCCCCCCEEEccCCcC
Q 046050 470 LSHLSYLILANN---NLEG----EVPVQLCLLKQLQLIDLSHNNL 507 (779)
Q Consensus 470 l~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~Ls~N~l 507 (779)
-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 125 N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 125 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344566666543 2221 1223344455666666665544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.66 E-value=28 Score=27.74 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=19.3
Q ss_pred chhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 046050 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEV 411 (779)
Q Consensus 371 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 411 (779)
..+|.++++|+.+.+..+ ++.....+|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555443 2223344555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.21 E-value=32 Score=27.43 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=26.1
Q ss_pred CccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050 342 FTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387 (779)
Q Consensus 342 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 387 (779)
++.+...+|.+|.+|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666654 2334455666677777666654
Done!