BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046052
VDDILPSPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILP
PPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETN
KAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQ
GPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTS
TPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKVET
PAASEGGGDAKPDPPATA

High Scoring Gene Products

Symbol, full name Information P value
AT2G20760 protein from Arabidopsis thaliana 5.1e-51
CLC2
clathrin light chain 2
protein from Arabidopsis thaliana 2.8e-41
CLC3
clathrin light chain 3
protein from Arabidopsis thaliana 2.3e-39

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046052
        (318 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2051472 - symbol:AT2G20760 species:3702 "Arabi...   530  5.1e-51   1
TAIR|locus:2061196 - symbol:CLC2 "clathrin light chain 2"...   438  2.8e-41   1
TAIR|locus:2074378 - symbol:CLC3 "clathrin light chain 3"...   420  2.3e-39   1


>TAIR|locus:2051472 [details] [associations]
            symbol:AT2G20760 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006886 "intracellular protein transport"
            evidence=IEA] [GO:0016192 "vesicle-mediated transport"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006499 "N-terminal protein
            myristoylation" evidence=RCA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=RCA] [GO:0007030 "Golgi
            organization" evidence=RCA] [GO:0007033 "vacuole organization"
            evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
            InterPro:IPR000996 Pfam:PF01086 GO:GO:0005829 GO:GO:0005886
            GO:GO:0006886 EMBL:CP002685 GO:GO:0016192 GO:GO:0005198
            GO:GO:0030130 GO:GO:0030132 EMBL:AC006234 EMBL:AY057515
            EMBL:AY057654 EMBL:BT025885 EMBL:AY084472 IPI:IPI00532112
            PIR:A84593 RefSeq:NP_565484.1 UniGene:At.23177 PRIDE:Q9SKU1
            EnsemblPlants:AT2G20760.1 GeneID:816605 KEGG:ath:AT2G20760
            TAIR:At2g20760 eggNOG:NOG255768 HOGENOM:HOG000241126
            InParanoid:Q9SKU1 OMA:NEMREEG PhylomeDB:Q9SKU1
            ProtClustDB:CLSN2914962 Genevestigator:Q9SKU1 PANTHER:PTHR10639
            Uniprot:Q9SKU1
        Length = 338

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 104/167 (62%), Positives = 119/167 (71%)

Query:    37 NGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLXXXXXXXXXMRN 96
             N  N +   +G D IF S+ PILP P+EM  EEGF  REWRR N +HL         MRN
Sbjct:    76 NDANGNGGGSGGDAIFASDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRN 134

Query:    97 QIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPR 156
             QII EAE++K+AFYEKR   +ETNK  NRE+EKLY AN+EKFHKEVDKHYWKAIAELIPR
Sbjct:   135 QIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPR 194

Query:   157 EVANIEXXXXXXXXXXXPSIVVIQGPKPGKPTDLSRMRQMYMKLKNN 203
             EV NIE           PS+ VIQGPKPGKPTDL RMRQ+++KLK N
Sbjct:   195 EVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTN 241


>TAIR|locus:2061196 [details] [associations]
            symbol:CLC2 "clathrin light chain 2" species:3702
            "Arabidopsis thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0016192
            "vesicle-mediated transport" evidence=IEA] [GO:0030130 "clathrin
            coat of trans-Golgi network vesicle" evidence=IEA] [GO:0030132
            "clathrin coat of coated pit" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0009504 "cell plate" evidence=IDA]
            InterPro:IPR000996 Pfam:PF01086 GO:GO:0005886 GO:GO:0006886
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016192 GO:GO:0005856
            GO:GO:0005198 GO:GO:0009941 GO:GO:0030130 GO:GO:0030132
            GO:GO:0009524 GO:GO:0009504 eggNOG:NOG255768 HOGENOM:HOG000241126
            PANTHER:PTHR10639 EMBL:AF002109 EMBL:AY092995 EMBL:AY114610
            EMBL:AK226476 EMBL:AY088269 IPI:IPI00537302 PIR:G84824
            RefSeq:NP_565921.1 UniGene:At.22455 UniGene:At.67955 DIP:DIP-59589N
            IntAct:O04209 PaxDb:O04209 PRIDE:O04209 EnsemblPlants:AT2G40060.1
            GeneID:818594 KEGG:ath:AT2G40060 TAIR:At2g40060 InParanoid:O04209
            OMA:PASPDAY PhylomeDB:O04209 ProtClustDB:CLSN2917287
            Genevestigator:O04209 Uniprot:O04209
        Length = 258

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 88/161 (54%), Positives = 111/161 (68%)

Query:    49 DNIFVSND----PILPPPSEMMPEEGFAFREWRRQNAVHLXXXXXXXXXMRNQIIDEAEE 104
             D IF SN     PILPPPSEM  +EGFA REWRRQNA+ L         +  QII+EA++
Sbjct:    63 DGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQ 122

Query:   105 YKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEXX 164
             YK  F++K ++  E NKA NRE+EKLY+ N+EKF+ E  K+YWKAIAEL+P+EV  IE  
Sbjct:   123 YKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKR 182

Query:   165 XXXXXXXX--XPSIVVIQGPKPGKPTDLSRMRQMYMKLKNN 203
                        P++ VIQGPKPGKPTDL+RMRQ+ +KLK+N
Sbjct:   183 RGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHN 223


>TAIR|locus:2074378 [details] [associations]
            symbol:CLC3 "clathrin light chain 3" species:3702
            "Arabidopsis thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0016192
            "vesicle-mediated transport" evidence=IEA] [GO:0030130 "clathrin
            coat of trans-Golgi network vesicle" evidence=IEA] [GO:0030132
            "clathrin coat of coated pit" evidence=IEA] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=RCA]
            InterPro:IPR000996 Pfam:PF01086 EMBL:CP002686 GO:GO:0006886
            GO:GO:0016192 GO:GO:0005198 EMBL:AF049236 GO:GO:0030130
            GO:GO:0030132 HOGENOM:HOG000241126 PANTHER:PTHR10639 EMBL:AK228229
            IPI:IPI00529954 PIR:T51160 RefSeq:NP_566956.4 UniGene:At.11927
            PRIDE:F4J5M9 EnsemblPlants:AT3G51890.1 GeneID:824352
            KEGG:ath:AT3G51890 TAIR:At3g51890 eggNOG:NOG318928
            InParanoid:O65024 OMA:SAMEKEE Uniprot:F4J5M9
        Length = 258

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 85/150 (56%), Positives = 101/150 (67%)

Query:    54 SNDPILPPPSEMMPEEGFAFREWRRQNAVHLXXXXXXXXXMRNQIIDEAEEYKRAFYEKR 113
             +ND ILPPPS M  EEGFA REWRR NA+ L         M  QI++ AE+YK  FY KR
Sbjct:    81 TNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKR 140

Query:   114 KLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEXXXXXXXXXXX 173
              + +E NK  NRE+EK ++ N+EKF+ E DK+ WKAIAELIPREV  IE           
Sbjct:   141 NVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKKKTA-- 198

Query:   174 PSIVVIQGPKPGKPTDLSRMRQMYMKLKNN 203
              +I VIQGPKPGKPTDLSRMRQ+  KLK+N
Sbjct:   199 -TITVIQGPKPGKPTDLSRMRQVLTKLKHN 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.129   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      318       210   0.00080  112 3  11 23  0.47    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.31u 0.13s 20.44t   Elapsed:  00:00:01
  Total cpu time:  20.31u 0.14s 20.45t   Elapsed:  00:00:01
  Start:  Fri May 10 17:42:50 2013   End:  Fri May 10 17:42:51 2013

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