BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046052
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2
SV=1
Length = 338
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 195/279 (69%), Gaps = 11/279 (3%)
Query: 7 SPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMM 66
SP Y F +S P + DF+SPF+ V++ + D IF S+ PILP P+EM
Sbjct: 52 SPNGYG--FGASSP---NHDFSSPFESSVNDANGNGGGSG-GDAIFASDGPILPDPNEMR 105
Query: 67 PEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNRE 126
EEGF REWRR N +HLEEKEK+EKEMRNQII EAE++K+AFYEKR +ETNK NRE
Sbjct: 106 -EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNRE 164
Query: 127 REKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGK 186
+EKLY AN+EKFHKEVDKHYWKAIAELIPREV NIEKK+G+KD DKKPS+ VIQGPKPGK
Sbjct: 165 KEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGK 224
Query: 187 PTDLSRMRQMYMKLKNNPPSHMMPPPPPP--AKRGKDAKDGKDAKEEKDEKNRKTSTPSA 244
PTDL RMRQ+++KLK NPP HMMPPPPP AK GKDAKDGKDAK KD K+ K
Sbjct: 225 PTDLGRMRQIFLKLKTNPPPHMMPPPPPAKDAKDGKDAKDGKDAKTGKDGKDAKGGKD-- 282
Query: 245 AGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKG 283
A + D TE +PAKD + P A A G
Sbjct: 283 AKDLKDGKPADPKVTEEKRPSPAKDASVETAKPDAAASG 321
>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica
GN=Os06g0731800 PE=2 SV=1
Length = 291
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/191 (66%), Positives = 151/191 (79%), Gaps = 6/191 (3%)
Query: 44 NDAGHDNIFVS----NDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQII 99
N + HD+ F + N P+LPPP++M +EGF REWRRQNA+ LEEKEK+EKEMRNQII
Sbjct: 61 NGSLHDDPFAAPDNDNGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQII 120
Query: 100 DEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVA 159
+A+E+K+AF EKRKLNVET+K QNREREKLY+AN+EKFH DK YWKAI+ELIP E+A
Sbjct: 121 LDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQEKFHAGADKQYWKAISELIPHEIA 180
Query: 160 NIEKKKG--RKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAK 217
NIEK+ KD +KKP IVVIQGPKPGKPTD+SRMRQ+ +KLK+ PP HM PPPPP A
Sbjct: 181 NIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMRQILLKLKHTPPPHMKPPPPPAAA 240
Query: 218 RGKDAKDGKDA 228
GKD GKD
Sbjct: 241 TGKDGAAGKDG 251
>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
Length = 258
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 154/210 (73%), Gaps = 16/210 (7%)
Query: 24 SSDFASPFDP--DVDNGVNDSY----NDAG----HDNIFVSND----PILPPPSEMMPEE 69
++D S FD V++ V+D + +D G D IF SN PILPPPSEM +E
Sbjct: 28 ATDSFSAFDGSLQVEDSVDDVFAAPSSDYGAYSNGDGIFGSNGDHDGPILPPPSEMESDE 87
Query: 70 GFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREK 129
GFA REWRRQNA+ LEEKEKREKE+ QII+EA++YK F++K ++ E NKA NRE+EK
Sbjct: 88 GFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKEK 147
Query: 130 LYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHD--KKPSIVVIQGPKPGKP 187
LY+ N+EKF+ E K+YWKAIAEL+P+EV IEK++G+K+ KKP++ VIQGPKPGKP
Sbjct: 148 LYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKP 207
Query: 188 TDLSRMRQMYMKLKNNPPSHMMPPPPPPAK 217
TDL+RMRQ+ +KLK+NPPSH+ PP++
Sbjct: 208 TDLTRMRQILVKLKHNPPSHLKLTSQPPSE 237
>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2
SV=1
Length = 258
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 122/163 (74%), Gaps = 3/163 (1%)
Query: 54 SNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKR 113
+ND ILPPPS M EEGFA REWRR NA+ LEEKEK EKEM QI++ AE+YK FY KR
Sbjct: 81 TNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKR 140
Query: 114 KLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKK 173
+ +E NK NRE+EK ++ N+EKF+ E DK+ WKAIAELIPREV IE + +K K
Sbjct: 141 NVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKK---KT 197
Query: 174 PSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPA 216
+I VIQGPKPGKPTDLSRMRQ+ KLK+NPP+HM P P P+
Sbjct: 198 ATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPS 240
>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica
GN=Os04g0679100 PE=2 SV=1
Length = 301
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/183 (60%), Positives = 137/183 (74%), Gaps = 20/183 (10%)
Query: 23 LSSDFA-SPF--DPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQ 79
+S F+ SPF DP++D G + PILPPP++M EEG REWRRQ
Sbjct: 75 VSGGFSPSPFSPDPELDGG----------------DGPILPPPAQMGAEEGILLREWRRQ 118
Query: 80 NAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFH 139
NA+ LEEKE++EKE+R QI+ EAEE+K+AFYEKR N ETNK NREREK+++A +EKFH
Sbjct: 119 NAIVLEEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFH 178
Query: 140 KEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMK 199
E DK YWK+I+ELIP E+A IE K+G+KD DKKPSI VIQGPKPGKPTDLSRMRQ+ +K
Sbjct: 179 AEADKQYWKSISELIPHEIATIE-KRGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVK 237
Query: 200 LKN 202
LK+
Sbjct: 238 LKH 240
>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica
GN=Os07g0461500 PE=3 SV=1
Length = 363
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/187 (58%), Positives = 138/187 (73%), Gaps = 10/187 (5%)
Query: 55 NDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRK 114
+ P+LPPP E M EEG REWRRQNA+ LEEKE++E+E R +II EA+E+KR+F EKRK
Sbjct: 135 DGPVLPPP-EAMKEEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEKRK 193
Query: 115 LNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHD--- 171
LN +TN+AQNR+REKL++A +EKFH E +K YWKAIAE++P E+ +EK+ R++
Sbjct: 194 LNGDTNRAQNRDREKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGKRREKQSAE 253
Query: 172 -----KKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAK-RGKDAKDG 225
K+P +VV+QG KPGKPTDLSRMRQ+ MKLK PP HM PPPP PAK G D
Sbjct: 254 ANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLKQTPPPHMAPPPPQPAKDTGGDTDAN 313
Query: 226 KDAKEEK 232
KD + EK
Sbjct: 314 KDGEAEK 320
>sp|B4JMQ2|NO66_DROGR Bifunctional lysine-specific demethylase and histidyl-hydroxylase
NO66 OS=Drosophila grimshawi GN=GH24285 PE=3 SV=1
Length = 723
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 220 KDAKDGKDAKEEKDEKNRKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPA 279
++ K+GK E +K + S P+AA + P AA +S + P+K TA + P
Sbjct: 189 QEQKEGK----ELSKKGSRKSAPAAAPSCPLLRLSGNAAAIKSSAMPSKATAEKRKSCPL 244
Query: 280 PAKGAAAAENTHVP-NPPKVETPAASEGG 307
P K AAA + V PK + + GG
Sbjct: 245 PKKMAAAGKGVAVVKQEPKAKVESVQNGG 273
>sp|P17891|CLC1_YEAST Clathrin light chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CLC1 PE=1 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 75 EWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMAN 134
+W+++ AV + EK+ +++E++ ++ DEA ++ FY+ E + + ++
Sbjct: 123 QWKQRRAVEIHEKDLKDEELKKELQDEAIKHIDDFYDSYNKKKEQQLEDAAKEAEAFLKK 182
Query: 135 KEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVV 178
+++F + D W +LI ++ A+I G +D K I++
Sbjct: 183 RDEFFGQ-DNTTWDRALQLINQDDADI---IGGRDRSKLKEILL 222
>sp|A1DFN5|HSE1_NEOFI Class E vacuolar protein-sorting machinery protein hse1
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=hse1 PE=3 SV=1
Length = 603
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 189 DLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTSTPSAAGNT 248
D M Q YMKLK P+ PP+K GK ++ +A +K+E+ + + +
Sbjct: 126 DFGIMEQAYMKLKTQNPNLQ-----PPSKPGK--REITEADRQKEEEELQMALALSIREK 178
Query: 249 PTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAAA 287
P+ A + A S S PA T AA + P AA
Sbjct: 179 PSAAPEPKAEPSTSASVPASQTQAATSQAVPPGTSAATV 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,583,199
Number of Sequences: 539616
Number of extensions: 7303811
Number of successful extensions: 54601
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 1961
Number of HSP's that attempted gapping in prelim test: 41938
Number of HSP's gapped (non-prelim): 10933
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)