Query 046052
Match_columns 318
No_of_seqs 129 out of 224
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_J LCA, clathrin light cha 99.8 6.3E-20 2.2E-24 141.6 9.6 65 68-132 6-70 (70)
2 3lvg_D LCB, clathrin light cha 99.8 2.6E-21 8.9E-26 171.4 0.2 105 46-153 55-164 (190)
3 3lvh_D LCB, clathrin light cha 99.8 2.2E-19 7.6E-24 161.6 3.5 92 46-138 70-167 (205)
4 4efa_E V-type proton ATPase su 82.4 14 0.00048 32.4 11.2 51 73-123 24-75 (233)
5 3lvh_D LCB, clathrin light cha 62.9 13 0.00043 33.9 5.9 57 68-124 100-157 (205)
6 4a17_V RPL7, 60S ribosomal pro 51.3 67 0.0023 29.4 8.8 45 75-119 18-62 (239)
7 2yum_A ZZZ3 protein, zinc fing 49.7 26 0.00089 25.6 4.8 51 125-205 13-67 (75)
8 1wgx_A KIAA1903 protein; MYB D 44.4 17 0.00057 27.9 3.1 31 124-155 12-42 (73)
9 4efa_G V-type proton ATPase su 44.2 88 0.003 25.7 7.7 26 93-118 35-60 (119)
10 2cu7_A KIAA1915 protein; nucle 44.2 50 0.0017 24.0 5.6 26 125-155 14-39 (72)
11 2cjj_A Radialis; plant develop 43.0 36 0.0012 26.8 4.9 30 125-155 13-42 (93)
12 3frt_A Charged multivesicular 39.6 1.1E+02 0.0037 27.5 8.2 34 71-104 10-50 (218)
13 2cqq_A RSGI RUH-037, DNAJ homo 38.6 58 0.002 24.4 5.3 31 124-155 12-42 (72)
14 3lvg_D LCB, clathrin light cha 38.4 59 0.002 29.2 6.0 61 63-123 80-141 (190)
15 4f6r_C Stathmin-like domain R1 36.9 96 0.0033 24.7 6.5 27 110-136 58-84 (87)
16 3izc_e 60S ribosomal protein R 35.2 71 0.0024 29.3 6.3 43 75-117 21-63 (244)
17 1xi4_J LCA, clathrin light cha 32.7 1.6E+02 0.0055 22.3 8.0 64 61-124 2-66 (70)
18 3cvf_A Homer-3, homer protein 30.2 46 0.0016 25.9 3.6 30 144-202 47-76 (79)
19 1y66_A Engrailed homeodomain; 29.6 90 0.0031 22.3 4.7 13 74-86 2-14 (52)
20 3cve_A Homer protein homolog 1 28.8 52 0.0018 25.3 3.6 29 144-201 41-69 (72)
21 2yus_A SWI/SNF-related matrix- 28.2 33 0.0011 26.0 2.4 26 125-155 23-48 (79)
22 4h3z_A TRNA (guanine-N(1)-)-me 26.2 79 0.0027 29.8 5.0 16 71-86 227-242 (276)
23 3ky7_A TRNA (guanine-N(1)-)-me 25.9 76 0.0026 29.9 4.9 16 71-86 224-239 (269)
24 3osg_A MYB21; transcription-DN 25.9 88 0.003 24.9 4.7 25 126-155 68-92 (126)
25 2gd5_A Charged multivesicular 23.7 2.7E+02 0.0093 23.4 7.6 17 72-88 11-27 (179)
26 1l2p_A ATP synthase B chain; a 22.0 2E+02 0.0069 19.9 9.6 54 72-125 3-56 (61)
27 2z2q_B Coat protein gamma; wil 20.9 59 0.002 23.1 2.3 40 145-199 2-41 (44)
28 1kil_E Complexin I snare-compl 20.7 2.4E+02 0.0084 20.3 5.6 33 68-100 13-45 (49)
29 3iz5_e 60S ribosomal protein L 20.6 57 0.0019 29.9 2.9 26 91-116 39-64 (244)
30 2b5u_A Colicin E3; high resolu 20.4 3.3E+02 0.011 27.9 8.5 22 67-88 301-322 (551)
31 1m7v_A Nitric oxide synthase; 20.4 90 0.0031 30.5 4.3 21 95-115 4-24 (363)
32 2flq_A Nitric oxide synthase; 20.3 80 0.0027 31.0 3.9 21 95-115 13-33 (375)
33 2b5u_A Colicin E3; high resolu 20.1 2.5E+02 0.0087 28.8 7.6 11 95-105 323-333 (551)
No 1
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=99.81 E-value=6.3e-20 Score=141.60 Aligned_cols=65 Identities=18% Similarity=0.381 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046052 68 EEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYM 132 (318)
Q Consensus 68 EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~NRe~Ee~FL 132 (318)
+||++||+||++|+++|++||+.+++++++++++|+++||+||.+||.++++++++||..++.||
T Consensus 6 ~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl 70 (70)
T 1xi4_J 6 SEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY 70 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999999999999999999999999999999997
No 2
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=99.80 E-value=2.6e-21 Score=171.38 Aligned_cols=105 Identities=15% Similarity=0.249 Sum_probs=89.3
Q ss_pred CCCCCCCC-CCCC----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 46 AGHDNIFV-SNDP----ILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETN 120 (318)
Q Consensus 46 ~~~dd~f~-s~gp----ilp~P~em~~EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEkn 120 (318)
++++++|. ++|| +...+..+..+|||+||+|||+|+++|++||+.+++++++++++|++.||+||++|+++++++
T Consensus 55 ~~~Gd~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKn 134 (190)
T 3lvg_D 55 XXXXXXXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134 (190)
T ss_dssp HHCCCCCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677775 4443 233334455699999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhhhhhcccccCCChHHHHHhh
Q 046052 121 KAQNREREKLYMANKEKFHKEVDKHYWKAIAEL 153 (318)
Q Consensus 121 ka~NRe~Ee~FLa~rE~f~~~a~gt~WERVaeL 153 (318)
|.+||+.|++||++|+. ...|.+|+--...
T Consensus 135 Ka~NR~aEEeFLaqRdd---ttiGyV~~~~~~~ 164 (190)
T 3lvg_D 135 KINNRIADKAFYQQPDA---DIIXXXXXXXXXX 164 (190)
T ss_dssp HHTTCSSTTTSSHHHHH---HHCCTTTHHHHHH
T ss_pred HHHhHHHHHHHHhCCcc---chhhhhccccccc
Confidence 99999999999999998 5679999854433
No 3
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=99.75 E-value=2.2e-19 Score=161.59 Aligned_cols=92 Identities=21% Similarity=0.361 Sum_probs=71.8
Q ss_pred CCCCCCCC-CCCCCC-----CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 46 AGHDNIFV-SNDPIL-----PPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVET 119 (318)
Q Consensus 46 ~~~dd~f~-s~gpil-----p~P~em~~EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEk 119 (318)
..+.++|. ++||.- ...... .+|||+||+|||+|++||++||+.+++++++++++|++.|++||++|+.++++
T Consensus 70 ~~ngd~~qesngp~d~yaai~qad~l-eeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK 148 (205)
T 3lvh_D 70 TVNGDVFQEANGPADGYAAIAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 148 (205)
T ss_dssp ---------------------CCSTT-TBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcCCCccchhhhcccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666774 555532 223333 48999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhhhhhc
Q 046052 120 NKAQNREREKLYMANKEKF 138 (318)
Q Consensus 120 nka~NRe~Ee~FLa~rE~f 138 (318)
+|.+||..+++||++|+..
T Consensus 149 ~ka~NR~aeeeFlaqrd~~ 167 (205)
T 3lvh_D 149 NKINNRIADKAFYQQPDAD 167 (205)
T ss_dssp HHHTTCSSTTTSSHHHHHH
T ss_pred HHHHhHHHHHHHHhCccch
Confidence 9999999999999999874
No 4
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=82.36 E-value=14 Score=32.41 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 73 FREWRRQNAVHLEEKEKRE-KEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQ 123 (318)
Q Consensus 73 IREWREeqa~rLeEKDk~E-kEkKeeiikEAee~iD~FYe~rn~kkEknka~ 123 (318)
|++=-++.+.+|..+-+++ ...+.+++++++.-|+..|++...+.+..+..
T Consensus 24 I~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i 75 (233)
T 4efa_E 24 IRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQI 75 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666555443 34677889999999999999888777766544
No 5
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=62.92 E-value=13 Score=33.88 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046052 68 EEGFAFREWRRQNAVHLEEKE-KREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQN 124 (318)
Q Consensus 68 EEpEaIREWREeqa~rLeEKD-k~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~N 124 (318)
|--..-|+=+.+|-+++.+.. ++.++|++++++++++|-..|-++-.+.+..|+...
T Consensus 100 EsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~ae 157 (205)
T 3lvh_D 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157 (205)
T ss_dssp THHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455577777777666665555 667899999999999999999999988888887653
No 6
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=51.28 E-value=67 Score=29.44 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 75 EWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVET 119 (318)
Q Consensus 75 EWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEk 119 (318)
+|+..+..+..+.-...+..+..+.+.|+.|+.+|...+...+.-
T Consensus 18 ~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~ 62 (239)
T 4a17_V 18 KLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDE 62 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433334455667788899999977776655555433
No 7
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.71 E-value=26 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhhcccccCC---ChHHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCCCchh-HHHHHHHHHh
Q 046052 125 REREKLYMANKEKFHKEVDK---HYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDL-SRMRQMYMKL 200 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~g---t~WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk~kDl-SRMRqILLkL 200 (318)
.++++.|+.....| -... .-|..|+++|.. +.+ +++ .|+...|.+|
T Consensus 13 ~eEd~~L~~~v~~~--g~~~~~~~~W~~IA~~~~~--------------------------Rt~--~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 13 VEEQKKLEQLLIKY--PPEEVESRRWQKIADELGN--------------------------RTA--KQVASQVQKYFIKL 62 (75)
T ss_dssp HHHHHHHHHHHHHS--CCCSCHHHHHHHHHHHHSS--------------------------SCH--HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHh--CCCCCCcccHHHHHHHhCC--------------------------CCH--HHHHHHHHHHHHHH
Confidence 35556666665554 1111 789999999951 101 333 7888888888
Q ss_pred hCCCC
Q 046052 201 KNNPP 205 (318)
Q Consensus 201 K~~Pp 205 (318)
.....
T Consensus 63 ~k~g~ 67 (75)
T 2yum_A 63 TKAGI 67 (75)
T ss_dssp STTCS
T ss_pred HhcCC
Confidence 76654
No 8
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=44.42 E-value=17 Score=27.86 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 124 NREREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 124 NRe~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
++++++.|+.....|- ...-..|++|+..|.
T Consensus 12 T~eE~k~fe~ALa~~~-~~tp~rWe~IA~~V~ 42 (73)
T 1wgx_A 12 NEKELQKLHCAFASLP-KHKPGFWSEVAAAVG 42 (73)
T ss_dssp CHHHHHHHHHHHHHSC-SSSSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC-CCCccHHHHHHHHcC
Confidence 3567778877777663 223578999999995
No 9
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=44.20 E-value=88 Score=25.73 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 93 EMRNQIIDEAEEYKRAFYEKRKLNVE 118 (318)
Q Consensus 93 EkKeeiikEAee~iD~FYe~rn~kkE 118 (318)
.+..+++.+|+..|+.|-.+|+....
T Consensus 35 ~rLKqAK~EA~~EIe~yR~qkE~eFk 60 (119)
T 4efa_G 35 DKLKQAKTDAAKEIDSYKIQKDKELK 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999998888666655544
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=44.19 E-value=50 Score=24.02 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 125 REREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
.++++.|+.....+ |+-|..|+++|.
T Consensus 14 ~eEd~~l~~~~~~~-----G~~W~~Ia~~~~ 39 (72)
T 2cu7_A 14 IEEKELFEQGLAKF-----GRRWTKISKLIG 39 (72)
T ss_dssp HHHHHHHHHHHHHT-----CSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-----CcCHHHHHHHcC
Confidence 35566666655554 779999999985
No 11
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=43.01 E-value=36 Score=26.83 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 125 REREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
+++++.|+.....|- ...++-|+.|+.+|.
T Consensus 13 ~eEd~~L~~al~~~~-~~~~~rW~~IA~~vp 42 (93)
T 2cjj_A 13 AKENKAFERALAVYD-KDTPDRWANVARAVE 42 (93)
T ss_dssp HHHHHHHHHHHHHSC-TTCTTHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcC-CCCCchHHHHHHHcC
Confidence 566777766666552 223578999999995
No 12
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=39.58 E-value=1.1e+02 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 046052 71 FAFREWRRQNAVHLEEKE-------KREKEMRNQIIDEAEE 104 (318)
Q Consensus 71 EaIREWREeqa~rLeEKD-------k~EkEkKeeiikEAee 104 (318)
|.+|+|++.-...+.+.| +.++..+.+|++.|+.
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakk 50 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKK 50 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999886665555544 4455555666666655
No 13
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=38.64 E-value=58 Score=24.39 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 124 NREREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 124 NRe~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
++++.+.|......|- .....-|++|++.+.
T Consensus 12 T~eE~k~fe~al~~~p-~~t~~RW~~IA~~lg 42 (72)
T 2cqq_A 12 TEEDLSQLTRSMVKFP-GGTPGRWEKIAHELG 42 (72)
T ss_dssp CHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC-CCCCcHHHHHHHHhC
Confidence 3567777777777663 222467999999984
No 14
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=38.38 E-value=59 Score=29.16 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=48.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 63 SEMMPEEGFAFREWRRQNAVHLEEKE-KREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQ 123 (318)
Q Consensus 63 ~em~~EEpEaIREWREeqa~rLeEKD-k~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~ 123 (318)
.+.++|--..-||=+.++-+++.+.. ++.+++++++++++++|-..+-++-.+.+.+|+..
T Consensus 80 LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~a 141 (190)
T 3lvg_D 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141 (190)
T ss_dssp TTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35566777788887777766666655 66789999999999999999999988888888765
No 15
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=36.92 E-value=96 Score=24.72 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 046052 110 YEKRKLNVETNKAQNREREKLYMANKE 136 (318)
Q Consensus 110 Ye~rn~kkEknka~NRe~Ee~FLa~rE 136 (318)
+.-+..++-+.++..|+++++.|.+.+
T Consensus 58 Rks~EA~~L~~Laekreh~~EV~k~~~ 84 (87)
T 4f6r_C 58 RKAHFAAMLERLQEKDKHAEEVRKNKE 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666677777778888888888777654
No 16
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=35.17 E-value=71 Score=29.33 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 75 EWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNV 117 (318)
Q Consensus 75 EWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kk 117 (318)
+|+.++.++..++-...++.+..+.+.|+.|+.+|...+...+
T Consensus 21 ~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~i 63 (244)
T 3izc_e 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555554444445566677888999998777765544443
No 17
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=32.75 E-value=1.6e+02 Score=22.31 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046052 61 PPSEMMPEEGFAFREWRRQNAVHLEEKE-KREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQN 124 (318)
Q Consensus 61 ~P~em~~EEpEaIREWREeqa~rLeEKD-k~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~N 124 (318)
+|.++++|---.-|+=|..+-.+..+.. +...+++++++++.++|-+.|-.+....+..|...-
T Consensus 2 ~~~~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~ 66 (70)
T 1xi4_J 2 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVAD 66 (70)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888887777777 556789999999999999999999999999887653
No 18
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.23 E-value=46 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=23.5
Q ss_pred CChHHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCCCchhHHHHHHHHHhhC
Q 046052 144 KHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKN 202 (318)
Q Consensus 144 gt~WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk~kDlSRMRqILLkLK~ 202 (318)
.+.|.++.++.| ||.-|++-+|+=|-+|-.
T Consensus 47 ~~Elk~l~e~Ld-----------------------------~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 47 RAEVGRAAQLLD-----------------------------VSLFELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----------------------------hHHHHHHHHHHHHHHhcc
Confidence 478899999997 245789999998888743
No 19
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=29.61 E-value=90 Score=22.34 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 046052 74 REWRRQNAVHLEE 86 (318)
Q Consensus 74 REWREeqa~rLeE 86 (318)
+.|-++-+..|.|
T Consensus 2 kqwseeverklke 14 (52)
T 1y66_A 2 KQWSEEVERKLKE 14 (52)
T ss_dssp -CCHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4566555544444
No 20
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.78 E-value=52 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred CChHHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCCCchhHHHHHHHHHhh
Q 046052 144 KHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLK 201 (318)
Q Consensus 144 gt~WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk~kDlSRMRqILLkLK 201 (318)
.+.|.++.++.| ||.-|++-+|+=|-+|=
T Consensus 41 ~~Elk~~~e~Ld-----------------------------~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 41 RSNLKTLLEILD-----------------------------GKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-----------------------------hHHHHHHHHHHHHHHhc
Confidence 477899999887 24478888888888773
No 21
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=28.15 E-value=33 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 125 REREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
.++++.||.....| |.-|..|+++|.
T Consensus 23 ~eEd~~Ll~~v~~~-----G~~W~~IA~~v~ 48 (79)
T 2yus_A 23 EQETLLLLEALEMY-----KDDWNKVSEHVG 48 (79)
T ss_dssp HHHHHHHHHHHHHS-----SSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh-----CCCHHHHHHHcC
Confidence 46777888777765 588999999994
No 22
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=26.20 E-value=79 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 046052 71 FAFREWRRQNAVHLEE 86 (318)
Q Consensus 71 EaIREWREeqa~rLeE 86 (318)
..|++||+++.++.-.
T Consensus 227 ~~I~~WR~~qsl~rT~ 242 (276)
T 4h3z_A 227 AEIEQWRRREALRNTW 242 (276)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999887654
No 23
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=25.92 E-value=76 Score=29.86 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 046052 71 FAFREWRRQNAVHLEE 86 (318)
Q Consensus 71 EaIREWREeqa~rLeE 86 (318)
..|++||++|.++.-.
T Consensus 224 ~~I~~WR~~qsl~rT~ 239 (269)
T 3ky7_A 224 ANIDAWRHEQKLIRTY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999887654
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=25.89 E-value=88 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 126 EREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 126 e~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
++++.++.....+ |+.|..|++++.
T Consensus 68 eEd~~L~~~v~~~-----G~~W~~Ia~~l~ 92 (126)
T 3osg_A 68 EEDALLVQKIQEY-----GRQWAIIAKFFP 92 (126)
T ss_dssp HHHHHHHHHHHHH-----CSCHHHHHTTST
T ss_pred HHHHHHHHHHHHH-----CcCHHHHHHHcC
Confidence 5555555554443 688999999884
No 25
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=23.70 E-value=2.7e+02 Score=23.41 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046052 72 AFREWRRQNAVHLEEKE 88 (318)
Q Consensus 72 aIREWREeqa~rLeEKD 88 (318)
.||+|...-...+.+.|
T Consensus 11 ~lr~~~~~L~~~~r~Ld 27 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVD 27 (179)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999887777666555
No 26
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=22.03 E-value=2e+02 Score=19.88 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046052 72 AFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNR 125 (318)
Q Consensus 72 aIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~NR 125 (318)
.|.+=|.+-...|.+=.+......++++.+|....+.+.+.-...++..+..-+
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~ 56 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAR 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666566667778888888888877777776766666555443
No 27
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=20.91 E-value=59 Score=23.06 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=22.6
Q ss_pred ChHHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 046052 145 HYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMK 199 (318)
Q Consensus 145 t~WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk~kDlSRMRqILLk 199 (318)
+-||||-.|+..-+.. .++|.||.....+.++-+-.+|-.
T Consensus 2 ~~WErVk~ilks~l~a---------------~S~iPGPVG~~asGi~~l~~l~~~ 41 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAA---------------ASNIPGPIGVAASGISGLSALFEG 41 (44)
T ss_pred cHHHHHHHHHHHHHHH---------------HhcCCCchhHHHHhHHHHHHHHHH
Confidence 6799999999632111 134566654434555555555543
No 28
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.66 E-value=2.4e+02 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 68 EEGFAFREWRRQNAVHLEEKEKREKEMRNQIID 100 (318)
Q Consensus 68 EEpEaIREWREeqa~rLeEKDk~EkEkKeeiik 100 (318)
|--++||+-.+++...-...+..-+.+++.|.+
T Consensus 13 E~~eAlreaEe~Rk~Kh~kmE~eRE~mRq~IRd 45 (49)
T 1kil_E 13 ERQEALRQAEEERKAKYAKMEAEREVMRQGIRD 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667766666666666666555666666654
No 29
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=20.60 E-value=57 Score=29.95 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 91 EKEMRNQIIDEAEEYKRAFYEKRKLN 116 (318)
Q Consensus 91 EkEkKeeiikEAee~iD~FYe~rn~k 116 (318)
.++.+..+.+.|+.|+.+|...+...
T Consensus 39 ~k~~r~~~~~rae~~~~ey~~~~r~~ 64 (244)
T 3iz5_e 39 AAENTKVIYARAEQYAGEYEAQDKEL 64 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888877665544443
No 30
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.42 E-value=3.3e+02 Score=27.93 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=13.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 046052 67 PEEGFAFREWRRQNAVHLEEKE 88 (318)
Q Consensus 67 ~EEpEaIREWREeqa~rLeEKD 88 (318)
+||-..-+||+..+-++.+||+
T Consensus 301 eee~r~~qew~~~hp~~~Aer~ 322 (551)
T 2b5u_A 301 DEENRRQQEWDATHPVEAAERN 322 (551)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHH
Confidence 3555666778766666666555
No 31
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=20.37 E-value=90 Score=30.50 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046052 95 RNQIIDEAEEYKRAFYEKRKL 115 (318)
Q Consensus 95 KeeiikEAee~iD~FYe~rn~ 115 (318)
+++++.+|+++|++||.+...
T Consensus 4 ~~~l~~eA~~Fi~~~y~e~~~ 24 (363)
T 1m7v_A 4 MEILWNEAKAFIAECYQELGK 24 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 567899999999999998766
No 32
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus}
Probab=20.34 E-value=80 Score=31.01 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046052 95 RNQIIDEAEEYKRAFYEKRKL 115 (318)
Q Consensus 95 KeeiikEAee~iD~FYe~rn~ 115 (318)
+++++.+|+++|++||.+...
T Consensus 13 ~e~l~~eA~~Fi~~~y~e~~~ 33 (375)
T 2flq_A 13 DEQLMTKAEQFIIASYRELGK 33 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 457899999999999998766
No 33
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.11 E-value=2.5e+02 Score=28.76 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 046052 95 RNQIIDEAEEY 105 (318)
Q Consensus 95 KeeiikEAee~ 105 (318)
.+++..|+.+.
T Consensus 323 ~e~a~ael~~a 333 (551)
T 2b5u_A 323 YERARAELNQA 333 (551)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
Done!