Query 046052
Match_columns 318
No_of_seqs 129 out of 224
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 14:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046052.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046052hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cjja1 a.4.1.3 (A:8-70) Radia 56.3 7.4 0.00054 26.4 4.5 30 125-155 6-35 (63)
2 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 45.6 20 0.0014 23.8 5.3 26 125-155 7-32 (65)
3 d1m7va_ d.174.1.1 (A:) Nitric 32.1 21 0.0016 32.6 4.7 20 95-114 4-23 (363)
4 d1om4a_ d.174.1.1 (A:) Nitric 29.2 26 0.0019 32.6 4.7 21 93-113 51-71 (418)
5 d1uala_ c.116.1.4 (A:) tRNA(m1 26.9 17 0.0012 31.6 2.8 17 71-87 204-220 (252)
6 d1q2oa_ d.174.1.1 (A:) Nitric 23.9 35 0.0025 31.6 4.6 32 94-125 55-90 (416)
7 d1gv2a2 a.4.1.3 (A:144-190) c- 23.5 24 0.0018 22.6 2.5 26 125-155 6-31 (47)
8 d2eyqa3 c.37.1.19 (A:546-778) 23.5 25 0.0018 29.4 3.3 87 107-209 24-110 (233)
9 d1q6ha_ d.26.1.1 (A:) Peptidyl 22.3 86 0.0063 25.0 6.4 32 104-135 65-96 (210)
10 d1q77a_ c.26.2.4 (A:) Hypothet 22.2 82 0.006 21.6 5.5 15 141-155 92-106 (138)
11 d2pv7a1 a.100.1.12 (A:244-371) 20.2 1.1E+02 0.0079 22.3 6.1 41 71-111 75-115 (128)
12 d3e7ma1 d.174.1.1 (A:77-497) N 20.1 26 0.0019 32.5 2.8 32 95-126 54-89 (421)
No 1
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=56.30 E-value=7.4 Score=26.35 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 125 REREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
.++.+.|+.....|- ....+.|..|+++|.
T Consensus 6 ~eEd~~L~~~v~~~~-~~~~~~W~~Ia~~l~ 35 (63)
T d2cjja1 6 AKENKAFERALAVYD-KDTPDRWANVARAVE 35 (63)
T ss_dssp HHHHHHHHHHHHHSC-TTCTTHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHC-CCCchHHHHHHHHcC
Confidence 455666666656552 223457999999995
No 2
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.55 E-value=20 Score=23.80 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 125 REREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
.++++.|+.....+ |.-|..|++++.
T Consensus 7 ~eEd~~l~~~~~~~-----G~~W~~Ia~~~~ 32 (65)
T d2cu7a1 7 IEEKELFEQGLAKF-----GRRWTKISKLIG 32 (65)
T ss_dssp HHHHHHHHHHHHHT-----CSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh-----cchHHHHHHHcC
Confidence 46777777766664 689999999995
No 3
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=32.10 E-value=21 Score=32.55 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046052 95 RNQIIDEAEEYKRAFYEKRK 114 (318)
Q Consensus 95 KeeiikEAee~iD~FYe~rn 114 (318)
.+.++++|+++|++||.+.+
T Consensus 4 ~e~l~~eA~~Fi~~~y~e~~ 23 (363)
T d1m7va_ 4 MEILWNEAKAFIAECYQELG 23 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999998865
No 4
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.25 E-value=26 Score=32.56 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046052 93 EMRNQIIDEAEEYKRAFYEKR 113 (318)
Q Consensus 93 EkKeeiikEAee~iD~FYe~r 113 (318)
.-+++++.+|+++|++||.+.
T Consensus 51 ~~~e~ll~~A~~Fi~qyy~e~ 71 (418)
T d1om4a_ 51 RTKDQLFPLAKEFLDQYYSSI 71 (418)
T ss_dssp -CHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 345689999999999999984
No 5
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=26.91 E-value=17 Score=31.64 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046052 71 FAFREWRRQNAVHLEEK 87 (318)
Q Consensus 71 EaIREWREeqa~rLeEK 87 (318)
..|++||.++.++.-.+
T Consensus 204 ~~I~~Wr~~~sl~~T~~ 220 (252)
T d1uala_ 204 EEIRKWRLKQSLQRTWL 220 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999998876554
No 6
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.93 E-value=35 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhH
Q 046052 94 MRNQIIDEAEEYKRAFYEKRKLN----VETNKAQNR 125 (318)
Q Consensus 94 kKeeiikEAee~iD~FYe~rn~k----kEknka~NR 125 (318)
-+++++.+|+++|++||.+.+.. .++++.+.+
T Consensus 55 ~~e~ll~eA~~Fi~q~y~e~~~~~~~~~~~R~~ev~ 90 (416)
T d1q2oa_ 55 PAEQLLSQARDFINQYYSSIKRSGSQAHEERLQEVE 90 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHH
Confidence 35689999999999999985432 344555544
No 7
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.48 E-value=24 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.664 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhcccccCCChHHHHHhhch
Q 046052 125 REREKLYMANKEKFHKEVDKHYWKAIAELIP 155 (318)
Q Consensus 125 Re~Ee~FLa~rE~f~~~a~gt~WERVaeLID 155 (318)
.++++.++.-...+ |+-|..|+++++
T Consensus 6 ~eED~~L~~~v~~~-----G~~W~~Ia~~~~ 31 (47)
T d1gv2a2 6 EEEDRIIYQAHKRL-----GNRWAEIAKLLP 31 (47)
T ss_dssp HHHHHHHHHHHHHH-----SSCHHHHHTTCT
T ss_pred HHHHHHHHHHHHHH-----hhHHHHHHhHcC
Confidence 35555556555543 778999999985
No 8
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=23.47 E-value=25 Score=29.35 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhcccccCCChHHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCC
Q 046052 107 RAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGK 186 (318)
Q Consensus 107 D~FYe~rn~kkEknka~NRe~Ee~FLa~rE~f~~~a~gt~WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk 186 (318)
-..|.+|+..+-.....+++..+.|.+... | .....-|..++++... +. ..++...+++|.. |.
T Consensus 24 L~i~akR~~~kg~~~~~~~~~~~~~~~~lP-~--~lt~~Q~~~~~~i~~~----~~--------~~~~~~~LL~Gdv-Gs 87 (233)
T d2eyqa3 24 LDIYAQRAAKEGFAFKHDREQYQLFCDSFP-F--ETTPDQAQAINAVLSD----MC--------QPLAMDRLVCGDV-GF 87 (233)
T ss_dssp HHHHHHHHTSCCCCCCCCHHHHHHHHHTCC-S--CCCHHHHHHHHHHHHH----HH--------SSSCCEEEEECCC-CT
T ss_pred HHHHHHHhcccCCCCCCCHHHHHhhhhccc-c--ccchhHHHHHHHHHHH----Hh--------ccCccCeEEEcCC-CC
Confidence 345777776544444556667777775432 3 2334456666665531 11 1235567778864 33
Q ss_pred CchhHHHHHHHHHhhCCCCCCCC
Q 046052 187 PTDLSRMRQMYMKLKNNPPSHMM 209 (318)
Q Consensus 187 ~kDlSRMRqILLkLK~~Pp~h~~ 209 (318)
.+=.==|+-++.-|++.--+-++
T Consensus 88 GKT~V~~~a~~~~~~~g~qv~~l 110 (233)
T d2eyqa3 88 GKTEVAMRAAFLAVDNHKQVAVL 110 (233)
T ss_dssp TTHHHHHHHHHHHHTTTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCceEEE
Confidence 35555678888877765444333
No 9
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}
Probab=22.33 E-value=86 Score=24.96 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 046052 104 EYKRAFYEKRKLNVETNKAQNREREKLYMANK 135 (318)
Q Consensus 104 e~iD~FYe~rn~kkEknka~NRe~Ee~FLa~r 135 (318)
.+-..+++.++.++.+....|++..+.||++-
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (210)
T d1q6ha_ 65 AFEARVKSSAQAKMEKDAADNEAKGKEYREKF 96 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHhh
Confidence 33344566666777777788888888888743
No 10
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=22.16 E-value=82 Score=21.58 Aligned_cols=15 Identities=0% Similarity=-0.093 Sum_probs=13.1
Q ss_pred ccCCChHHHHHhhch
Q 046052 141 EVDKHYWKAIAELIP 155 (318)
Q Consensus 141 ~a~gt~WERVaeLID 155 (318)
...|..++.|++++.
T Consensus 92 v~~G~~~~~I~~~a~ 106 (138)
T d1q77a_ 92 YRIGPLSEEVKKFVE 106 (138)
T ss_dssp EECSCHHHHHHHHHT
T ss_pred eecchhHHHHHHhhh
Confidence 567999999999995
No 11
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=20.15 E-value=1.1e+02 Score=22.32 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052 71 FAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYE 111 (318)
Q Consensus 71 EaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe 111 (318)
+.|.+|++.-..-.+.-+....+...++.++|++|+.+|-+
T Consensus 75 ~~l~~~~~~l~~l~~~i~~~D~~~l~~~~~~a~~~~~~~~~ 115 (128)
T d2pv7a1 75 AVIETLKQTYDEALTFFENNDRQGFIDAFHKVRDWFGDYSE 115 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHH
Confidence 35555555444333332333455566777888888666633
No 12
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.11 E-value=26 Score=32.50 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHH
Q 046052 95 RNQIIDEAEEYKRAFYEKRK----LNVETNKAQNRE 126 (318)
Q Consensus 95 KeeiikEAee~iD~FYe~rn----~kkEknka~NRe 126 (318)
+++++.+|+++|++||.+.+ ...++++.+.+.
T Consensus 54 ~e~ll~eA~~Fi~qyy~e~~~~~~~~~~~R~~ev~~ 89 (421)
T d3e7ma1 54 LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTK 89 (421)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 35789999999999997632 233444444443
Done!