BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046053
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 169 bits (428), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 125/192 (65%), Gaps = 6/192 (3%)
Query: 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPN 65
+ K H V IP P Q HI + + AKLLH +GFHIT VNTE+NH+ LKSRG + DG +
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 66 FRFEAIPDGRDGLPASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAV 125
F FE+IP DGL + +QD+ +LC+++ + L+P+ +LL +L+ S+N P V
Sbjct: 66 FNFESIP---DGLTPMEGDGDVSQDVPTLCQSVRKN-FLKPYCELLTRLNHSTN--VPPV 119
Query: 126 SCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLKDESCLKKE 185
+C++SD M+FTI AA+ LP+ L+F+ SACS + F++ E+G+ P KDES L
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG 179
Query: 186 YLDSVMDWIPGM 197
L++ +DWIPG+
Sbjct: 180 CLETKVDWIPGL 191
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 23/189 (12%)
Query: 12 VCIPSPFQSHIKAMLQSAKLL--HHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFE 69
+ IP+P H+ + L+ AKLL H K +IT +F F S L P +
Sbjct: 13 IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLI 72
Query: 70 AIPDGRDGLPASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCII 129
+P+ P S + + E++I V K + + N V ++
Sbjct: 73 DLPEVEP--PPQELLKSPEFYILTFLESLIPHV----------KATIKTILSNKVVGLVL 120
Query: 130 SDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLKDESCLKKEYLDS 189
D F I G+PS LF T S F L +LK + + + D+S + L+
Sbjct: 121 -DFFCVSMIDVGNEFGIPSYLFLT-SNVGF--LSLMLSLKNRQIEEVFDDSDRDHQLLN- 175
Query: 190 VMDWIPGMA 198
IPG++
Sbjct: 176 ----IPGIS 180
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 23/189 (12%)
Query: 12 VCIPSPFQSHIKAMLQSAKLL--HHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFE 69
+ IP+P H+ + L+ AKLL H K +IT +F F S L P +
Sbjct: 13 IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLI 72
Query: 70 AIPDGRDGLPASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCII 129
+P+ P S + + E++I V K + + N V ++
Sbjct: 73 DLPEVEP--PPQELLKSPEFYILTFLESLIPHV----------KATIKTILSNKVVGLVL 120
Query: 130 SDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLKDESCLKKEYLDS 189
D F I G+PS LF T S F L +LK + + + D+S + L+
Sbjct: 121 -DFFCVSMIDVGNEFGIPSYLFLT-SNVGF--LSLMLSLKNRQIEEVFDDSDRDHQLLN- 175
Query: 190 VMDWIPGMA 198
IPG++
Sbjct: 176 ----IPGIS 180
>pdb|1MIO|C Chain C, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|A Chain A, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 533
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 67 RFEAIPDGRDGLPASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAV- 125
RF++ P+ GL + Y ST DM +D++ L + ++ +PA
Sbjct: 87 RFKSKPENGTGLNFNEYVFST--DMQE------SDIVFGGVNKLKDAIHEAYEMFHPAAI 138
Query: 126 ----SC---IISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQ 164
+C +I DD +A TA++ +G+P F S +KG+ Q
Sbjct: 139 GVYATCPVGLIGDDILAVAATASKEIGIPVHAF---SCEGYKGVSQ 181
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 125 VSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEK-GLFPLKDESCLK 183
VSC+++D F+ F A +G+ F+T S ++EK G+ ++
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRE--- 169
Query: 184 KEYLDSVMDWIPGMA 198
D ++++IPGM+
Sbjct: 170 ----DELLNFIPGMS 180
>pdb|3ALY|A Chain A, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
With C-Terminal Deletion
pdb|3ALY|B Chain B, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
With C-Terminal Deletion
Length = 143
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 143 RLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLKDESCLKKEYLDSVMDWIP 195
RLG+ S + S K + +K K + PL +++ K+ L++ + W+P
Sbjct: 65 RLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVP 117
>pdb|2EHG|A Chain A, Crystal Structure Of Hyperthermophilic Archaeal Rnase Hi
Length = 149
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 143 RLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLKDESCLKKEYLDSVMDWIP 195
RLG+ S + S K + +K K + PL +++ K+ L++ + W+P
Sbjct: 65 RLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVP 117
>pdb|2B7N|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7N|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7N|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
Length = 273
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 128 IISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLKD 178
++ DF A A++ G+ S + + G++ QT+K+K F KD
Sbjct: 24 VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGIECVQTIKDKERFKPKD 74
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 118 SNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEKGLFPLK 177
SN ++P VS + DF FT++ +R+ ++T GL + L + +
Sbjct: 228 SNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTE 287
Query: 178 DESCLKKEYL---DSVMD 192
+ + L EY D VMD
Sbjct: 288 ELAMLMGEYFQVQDDVMD 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,086,847
Number of Sequences: 62578
Number of extensions: 235363
Number of successful extensions: 712
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 11
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)