Query 046053
Match_columns 199
No_of_seqs 112 out of 1182
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 2E-28 4.4E-33 215.8 19.9 168 7-198 5-172 (448)
2 PLN02555 limonoid glucosyltran 100.0 2.5E-28 5.5E-33 216.3 19.8 154 1-166 1-158 (480)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.6E-28 7.7E-33 214.2 20.0 154 1-173 1-154 (451)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.4E-28 1.2E-32 214.3 19.4 150 5-167 6-157 (477)
5 PLN02173 UDP-glucosyl transfer 100.0 2.2E-27 4.7E-32 208.8 18.9 143 5-164 2-144 (449)
6 PLN02448 UDP-glycosyltransfera 100.0 2.6E-27 5.6E-32 209.5 19.5 171 3-198 5-177 (459)
7 PLN02534 UDP-glycosyltransfera 100.0 6.5E-27 1.4E-31 207.7 19.7 154 3-165 3-160 (491)
8 PLN02210 UDP-glucosyl transfer 100.0 5.2E-27 1.1E-31 207.2 18.7 144 1-167 1-146 (456)
9 PLN02670 transferase, transfer 100.0 5.2E-27 1.1E-31 207.4 17.8 152 6-174 4-160 (472)
10 PLN02992 coniferyl-alcohol glu 99.9 4.4E-26 9.5E-31 201.8 18.2 144 7-169 4-149 (481)
11 PLN00164 glucosyltransferase; 99.9 5.7E-26 1.2E-30 201.7 17.8 145 7-168 2-154 (480)
12 PLN02554 UDP-glycosyltransfera 99.9 1.1E-25 2.3E-30 200.2 18.2 151 7-171 1-159 (481)
13 PLN02152 indole-3-acetate beta 99.9 1.1E-25 2.3E-30 198.4 17.6 145 7-166 2-148 (455)
14 PLN03004 UDP-glycosyltransfera 99.9 4.8E-25 1E-29 194.1 18.7 151 7-168 2-156 (451)
15 PLN03007 UDP-glucosyltransfera 99.9 5.7E-25 1.2E-29 195.6 18.5 153 5-166 2-164 (482)
16 PLN02207 UDP-glycosyltransfera 99.9 8.9E-25 1.9E-29 193.1 18.6 152 7-169 2-160 (468)
17 PLN03015 UDP-glucosyl transfer 99.9 9.5E-25 2E-29 192.6 18.4 148 8-169 3-153 (470)
18 PLN00414 glycosyltransferase f 99.9 7.9E-25 1.7E-29 192.7 15.8 139 7-164 3-146 (446)
19 PLN02167 UDP-glycosyltransfera 99.9 2.8E-24 6E-29 190.9 18.2 155 7-168 2-162 (475)
20 PLN02208 glycosyltransferase f 99.9 3.8E-24 8.2E-29 188.3 16.1 144 6-166 2-147 (442)
21 PLN02764 glycosyltransferase f 99.9 1.2E-23 2.7E-28 185.0 16.0 143 6-164 3-147 (453)
22 cd03784 GT1_Gtf_like This fami 99.7 1.3E-16 2.8E-21 138.3 10.4 129 9-157 1-137 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 5.6E-15 1.2E-19 128.0 11.2 122 14-155 1-123 (392)
24 PF03033 Glyco_transf_28: Glyc 99.4 5.1E-13 1.1E-17 99.4 3.7 132 11-157 1-133 (139)
25 KOG1192 UDP-glucuronosyl and U 99.2 1.4E-11 3.1E-16 109.6 6.1 151 8-168 5-159 (496)
26 COG1819 Glycosyl transferases, 98.7 2.4E-08 5.2E-13 87.5 6.7 56 8-73 1-56 (406)
27 PHA03392 egt ecdysteroid UDP-g 98.6 2.6E-07 5.6E-12 83.2 10.7 133 9-156 21-169 (507)
28 PF13528 Glyco_trans_1_3: Glyc 98.6 1.4E-06 2.9E-11 73.2 12.7 124 9-157 1-126 (318)
29 TIGR00661 MJ1255 conserved hyp 98.4 3.2E-06 6.8E-11 71.6 11.7 118 12-155 4-123 (321)
30 PF00201 UDPGT: UDP-glucoronos 98.2 4.6E-06 9.9E-11 74.6 8.5 55 10-73 2-56 (500)
31 PRK12446 undecaprenyldiphospho 97.9 0.00052 1.1E-08 59.1 13.9 126 10-161 3-130 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.4 0.0037 8.1E-08 54.0 12.2 126 10-161 2-130 (357)
33 TIGR01133 murG undecaprenyldip 97.2 0.012 2.6E-07 49.6 13.3 37 10-46 2-38 (348)
34 cd03785 GT1_MurG MurG is an N- 97.2 0.011 2.5E-07 49.8 12.9 116 10-151 1-118 (350)
35 PRK00726 murG undecaprenyldiph 97.2 0.012 2.7E-07 50.0 13.0 117 9-151 2-120 (357)
36 TIGR00215 lpxB lipid-A-disacch 97.0 0.012 2.5E-07 51.4 11.1 38 9-47 6-43 (385)
37 cd03818 GT1_ExpC_like This fam 96.3 0.097 2.1E-06 45.3 12.3 112 11-152 2-116 (396)
38 TIGR03590 PseG pseudaminic aci 95.8 0.16 3.4E-06 42.3 10.8 33 16-48 11-43 (279)
39 PRK00025 lpxB lipid-A-disaccha 95.6 0.14 3.1E-06 43.8 10.4 37 9-46 2-38 (380)
40 cd03816 GT1_ALG1_like This fam 95.6 0.36 7.7E-06 42.3 12.9 39 8-46 3-41 (415)
41 cd03800 GT1_Sucrose_synthase T 95.4 0.14 3E-06 43.5 9.6 29 19-47 21-49 (398)
42 PRK10307 putative glycosyl tra 95.0 0.42 9.1E-06 41.5 11.4 38 9-46 1-42 (412)
43 cd03823 GT1_ExpE7_like This fa 95.0 0.57 1.2E-05 38.6 11.7 30 19-48 15-44 (359)
44 PF13579 Glyco_trans_4_4: Glyc 94.6 0.17 3.7E-06 36.8 6.9 98 24-154 6-105 (160)
45 COG4671 Predicted glycosyl tra 94.1 0.57 1.2E-05 40.5 9.6 58 8-74 9-70 (400)
46 cd03794 GT1_wbuB_like This fam 93.9 1.1 2.3E-05 37.1 11.0 30 19-48 14-43 (394)
47 TIGR02470 sucr_synth sucrose s 91.5 4.5 9.7E-05 38.8 12.5 129 8-150 255-413 (784)
48 cd03805 GT1_ALG2_like This fam 91.3 7.1 0.00015 33.1 12.9 37 10-46 2-40 (392)
49 PF04007 DUF354: Protein of un 91.3 3.9 8.4E-05 35.2 11.1 113 20-166 11-124 (335)
50 TIGR03449 mycothiol_MshA UDP-N 90.8 3.2 7E-05 35.6 10.4 30 18-47 19-48 (405)
51 TIGR02468 sucrsPsyn_pln sucros 90.4 5.7 0.00012 39.2 12.4 138 6-153 167-341 (1050)
52 PLN00142 sucrose synthase 89.9 4 8.6E-05 39.2 10.7 31 123-153 407-439 (815)
53 TIGR02472 sucr_P_syn_N sucrose 89.8 5.1 0.00011 35.3 10.9 23 23-45 30-54 (439)
54 PF12000 Glyco_trans_4_3: Gkyc 89.0 8.2 0.00018 29.9 10.2 95 34-153 1-96 (171)
55 cd03814 GT1_like_2 This family 88.3 0.77 1.7E-05 37.9 4.4 30 19-48 14-43 (364)
56 PRK13609 diacylglycerol glucos 88.2 0.79 1.7E-05 39.3 4.6 39 7-45 3-42 (380)
57 PLN02871 UDP-sulfoquinovose:DA 87.6 1.4 2.9E-05 39.2 5.8 41 6-46 56-101 (465)
58 cd03808 GT1_cap1E_like This fa 87.5 0.86 1.9E-05 37.2 4.2 39 10-48 1-39 (359)
59 cd04962 GT1_like_5 This family 87.4 0.67 1.5E-05 39.0 3.6 37 10-46 2-39 (371)
60 cd02067 B12-binding B12 bindin 87.1 1.4 3.1E-05 31.4 4.7 42 10-51 1-42 (119)
61 cd03819 GT1_WavL_like This fam 87.0 13 0.00027 30.8 11.1 29 19-47 10-38 (355)
62 PF13477 Glyco_trans_4_2: Glyc 86.8 2.2 4.7E-05 30.8 5.6 102 11-153 2-107 (139)
63 PF13439 Glyco_transf_4: Glyco 86.4 0.82 1.8E-05 33.7 3.2 29 20-48 13-41 (177)
64 PRK02261 methylaspartate mutas 86.2 2.4 5.3E-05 31.5 5.6 46 7-52 2-47 (137)
65 PRK01021 lpxB lipid-A-disaccha 84.8 7.3 0.00016 36.2 9.0 110 36-154 226-345 (608)
66 COG3980 spsG Spore coat polysa 83.3 2.3 5.1E-05 35.7 4.7 41 9-49 1-45 (318)
67 cd03817 GT1_UGDG_like This fam 82.1 2.3 5E-05 35.0 4.4 32 17-48 12-43 (374)
68 cd00561 CobA_CobO_BtuR ATP:cor 81.9 21 0.00045 27.3 10.4 33 10-42 4-36 (159)
69 PRK05595 replicative DNA helic 81.5 9.6 0.00021 33.9 8.4 41 11-51 204-245 (444)
70 cd03821 GT1_Bme6_like This fam 80.1 2.7 5.9E-05 34.5 4.2 31 18-48 13-43 (375)
71 cd03802 GT1_AviGT4_like This f 79.0 4.3 9.4E-05 33.4 5.1 38 9-46 1-46 (335)
72 cd03825 GT1_wcfI_like This fam 78.8 3.4 7.4E-05 34.3 4.4 39 9-47 1-41 (365)
73 cd02070 corrinoid_protein_B12- 78.0 5.9 0.00013 31.2 5.3 46 7-52 81-126 (201)
74 PRK06321 replicative DNA helic 77.9 26 0.00056 31.6 9.9 41 11-51 229-270 (472)
75 TIGR02370 pyl_corrinoid methyl 77.7 6.4 0.00014 31.0 5.4 47 7-53 83-129 (197)
76 cd04951 GT1_WbdM_like This fam 77.6 3 6.5E-05 34.6 3.8 29 18-46 11-39 (360)
77 PRK08760 replicative DNA helic 77.1 18 0.0004 32.6 8.8 41 11-51 232-273 (476)
78 PRK00654 glgA glycogen synthas 76.4 4.5 9.8E-05 36.0 4.7 26 20-45 18-43 (466)
79 PRK11519 tyrosine kinase; Prov 75.8 74 0.0016 30.2 16.0 41 7-47 524-566 (719)
80 PLN02846 digalactosyldiacylgly 75.3 4.5 9.7E-05 36.4 4.3 41 6-46 2-47 (462)
81 PRK09165 replicative DNA helic 74.2 23 0.00049 32.2 8.6 42 11-52 220-276 (497)
82 cd01635 Glycosyltransferase_GT 73.6 5.4 0.00012 30.3 4.0 26 18-43 12-37 (229)
83 cd03811 GT1_WabH_like This fam 72.7 6.1 0.00013 31.9 4.3 32 17-48 10-41 (353)
84 cd02071 MM_CoA_mut_B12_BD meth 72.6 9.2 0.0002 27.5 4.8 42 10-51 1-42 (122)
85 TIGR01005 eps_transp_fam exopo 72.5 55 0.0012 31.2 11.1 41 7-47 544-586 (754)
86 PRK05749 3-deoxy-D-manno-octul 72.3 64 0.0014 28.0 10.9 28 11-38 52-79 (425)
87 cd03795 GT1_like_4 This family 72.2 6.7 0.00015 32.4 4.5 31 18-48 13-43 (357)
88 cd02069 methionine_synthase_B1 72.2 11 0.00023 30.2 5.5 46 7-52 87-132 (213)
89 cd03801 GT1_YqgM_like This fam 70.3 8.5 0.00018 31.1 4.7 30 19-48 14-43 (374)
90 PF02441 Flavoprotein: Flavopr 69.4 7.6 0.00016 28.2 3.7 41 10-51 2-42 (129)
91 PRK07773 replicative DNA helic 68.9 37 0.00081 33.1 9.3 42 11-52 220-262 (886)
92 cd03820 GT1_amsD_like This fam 68.8 11 0.00023 30.4 5.0 31 18-48 12-42 (348)
93 PF02310 B12-binding: B12 bind 68.4 11 0.00023 26.6 4.3 38 10-47 2-39 (121)
94 TIGR02095 glgA glycogen/starch 67.7 9.8 0.00021 33.8 4.8 38 9-46 1-44 (473)
95 cd03806 GT1_ALG11_like This fa 67.6 60 0.0013 28.4 9.7 32 124-155 107-139 (419)
96 PRK05636 replicative DNA helic 67.6 36 0.00078 31.0 8.4 41 11-51 268-309 (505)
97 COG2874 FlaH Predicted ATPases 67.3 52 0.0011 26.8 8.2 36 18-53 38-73 (235)
98 cd04955 GT1_like_6 This family 66.9 9.4 0.0002 31.7 4.3 46 20-73 16-61 (363)
99 cd01018 ZntC Metal binding pro 66.2 31 0.00066 28.3 7.2 53 105-163 204-258 (266)
100 PRK05986 cob(I)alamin adenolsy 66.2 64 0.0014 25.5 10.9 38 7-44 21-58 (191)
101 COG1066 Sms Predicted ATP-depe 64.7 6.8 0.00015 34.7 3.0 40 11-51 96-135 (456)
102 PRK09841 cryptic autophosphory 64.6 1.3E+02 0.0029 28.6 15.8 41 7-47 529-571 (726)
103 PRK10422 lipopolysaccharide co 64.4 89 0.0019 26.5 11.4 46 6-51 3-50 (352)
104 PF02951 GSH-S_N: Prokaryotic 63.7 12 0.00026 27.2 3.7 26 23-48 18-43 (119)
105 TIGR00708 cobA cob(I)alamin ad 63.3 69 0.0015 24.8 10.6 35 8-42 5-39 (173)
106 COG1484 DnaC DNA replication p 63.1 14 0.00031 30.3 4.6 47 8-54 105-151 (254)
107 PF08660 Alg14: Oligosaccharid 62.1 58 0.0013 25.0 7.6 31 15-45 4-35 (170)
108 cd03796 GT1_PIG-A_like This fa 61.9 13 0.00028 32.1 4.3 27 20-46 15-41 (398)
109 COG0496 SurE Predicted acid ph 61.5 36 0.00077 28.1 6.5 25 25-50 16-40 (252)
110 cd03791 GT1_Glycogen_synthase_ 61.2 7.1 0.00015 34.5 2.7 26 20-45 17-42 (476)
111 PRK14089 ipid-A-disaccharide s 60.4 42 0.00092 29.0 7.2 33 123-155 75-112 (347)
112 PF06506 PrpR_N: Propionate ca 60.4 24 0.00052 27.0 5.2 45 104-157 111-155 (176)
113 TIGR03492 conserved hypothetic 60.0 1.1E+02 0.0024 26.7 9.9 26 23-48 11-41 (396)
114 PF04244 DPRP: Deoxyribodipyri 59.2 11 0.00025 30.4 3.3 27 20-46 46-72 (224)
115 PF08323 Glyco_transf_5: Starc 59.1 7.7 0.00017 31.5 2.3 27 20-46 17-43 (245)
116 COG2185 Sbm Methylmalonyl-CoA 58.6 17 0.00037 27.3 3.9 44 6-49 10-53 (143)
117 cd03786 GT1_UDP-GlcNAc_2-Epime 58.3 69 0.0015 26.8 8.2 29 124-152 88-119 (363)
118 PLN02316 synthase/transferase 58.0 24 0.00052 35.1 5.7 41 6-46 585-631 (1036)
119 COG1618 Predicted nucleotide k 57.5 50 0.0011 25.7 6.3 43 6-48 3-45 (179)
120 cd01421 IMPCH Inosine monophos 56.8 68 0.0015 25.3 7.1 27 25-53 13-39 (187)
121 PF04127 DFP: DNA / pantothena 56.0 13 0.00028 29.1 3.0 21 26-46 33-53 (185)
122 PF08026 Antimicrobial_5: Bee 55.8 1.5 3.2E-05 24.6 -1.6 25 13-37 15-39 (39)
123 cd03798 GT1_wlbH_like This fam 55.8 19 0.00041 29.2 4.2 32 18-49 13-44 (377)
124 COG0162 TyrS Tyrosyl-tRNA synt 55.1 14 0.0003 32.7 3.3 27 20-47 49-75 (401)
125 COG0299 PurN Folate-dependent 54.7 33 0.00071 27.3 5.0 34 123-156 28-61 (200)
126 cd03812 GT1_CapH_like This fam 54.0 20 0.00042 29.7 4.1 32 17-48 10-41 (358)
127 PF09314 DUF1972: Domain of un 53.2 22 0.00047 27.9 3.9 42 24-73 22-63 (185)
128 PRK10916 ADP-heptose:LPS hepto 52.5 1.4E+02 0.0031 25.2 11.2 43 9-51 1-45 (348)
129 cd03799 GT1_amsK_like This is 52.4 29 0.00063 28.5 4.8 27 21-47 13-39 (355)
130 cd01424 MGS_CPS_II Methylglyox 52.2 77 0.0017 22.0 8.5 82 21-149 11-99 (110)
131 TIGR00355 purH phosphoribosyla 52.2 70 0.0015 29.2 7.3 43 25-80 13-55 (511)
132 PF00201 UDPGT: UDP-glucoronos 52.0 1.3 2.7E-05 39.7 -3.7 29 124-152 119-147 (500)
133 PF07302 AroM: AroM protein; 51.5 32 0.0007 27.8 4.7 48 105-158 165-215 (221)
134 PF07894 DUF1669: Protein of u 51.2 34 0.00074 28.7 4.9 33 123-155 147-184 (284)
135 PRK08305 spoVFB dipicolinate s 50.7 23 0.0005 28.1 3.7 38 10-48 7-45 (196)
136 PF02572 CobA_CobO_BtuR: ATP:c 50.6 1.2E+02 0.0025 23.5 9.1 40 8-47 3-42 (172)
137 COG0052 RpsB Ribosomal protein 50.1 40 0.00086 27.8 5.0 33 124-156 156-190 (252)
138 cd03807 GT1_WbnK_like This fam 49.6 33 0.00072 27.8 4.7 35 13-47 6-40 (365)
139 COG1435 Tdk Thymidine kinase [ 49.5 1.3E+02 0.0029 23.9 10.3 39 10-48 5-44 (201)
140 PF12146 Hydrolase_4: Putative 49.5 57 0.0012 21.5 5.0 35 8-42 15-49 (79)
141 PLN02275 transferase, transfer 48.7 1.7E+02 0.0037 24.9 13.2 37 10-46 6-43 (371)
142 KOG2941 Beta-1,4-mannosyltrans 48.5 71 0.0015 28.0 6.4 62 4-74 8-71 (444)
143 PF00391 PEP-utilizers: PEP-ut 48.4 26 0.00056 23.2 3.2 30 124-153 30-61 (80)
144 TIGR00347 bioD dethiobiotin sy 48.3 1.1E+02 0.0024 22.6 12.4 28 15-42 5-32 (166)
145 PF01297 TroA: Periplasmic sol 48.0 51 0.0011 26.6 5.5 44 105-154 186-231 (256)
146 COG1797 CobB Cobyrinic acid a, 47.9 1.2E+02 0.0027 27.2 8.0 32 11-42 4-35 (451)
147 COG1703 ArgK Putative periplas 47.9 43 0.00093 28.6 5.0 43 7-49 50-92 (323)
148 PF00070 Pyr_redox: Pyridine n 47.8 27 0.00059 22.7 3.2 24 24-47 10-33 (80)
149 cd02065 B12-binding_like B12 b 47.3 52 0.0011 23.0 4.9 42 10-51 1-42 (125)
150 cd03822 GT1_ecORF704_like This 47.2 33 0.00072 28.1 4.4 29 19-47 13-41 (366)
151 PF13450 NAD_binding_8: NAD(P) 47.1 25 0.00053 22.5 2.8 21 26-46 9-29 (68)
152 PF04413 Glycos_transf_N: 3-De 47.0 72 0.0016 24.8 6.0 115 10-168 22-142 (186)
153 PF07801 DUF1647: Protein of u 46.8 92 0.002 23.4 6.2 64 5-73 56-121 (142)
154 COG0467 RAD55 RecA-superfamily 46.1 48 0.001 26.9 5.1 45 9-53 24-68 (260)
155 TIGR02853 spore_dpaA dipicolin 45.7 1E+02 0.0022 25.7 7.1 20 26-45 14-33 (287)
156 COG3150 Predicted esterase [Ge 45.1 42 0.00091 26.2 4.2 47 105-157 47-93 (191)
157 PF02684 LpxB: Lipid-A-disacch 45.0 1E+02 0.0022 26.9 7.1 49 105-159 69-121 (373)
158 TIGR03029 EpsG chain length de 44.9 1.7E+02 0.0037 23.8 15.8 39 7-45 101-141 (274)
159 TIGR00234 tyrS tyrosyl-tRNA sy 44.7 22 0.00048 31.1 3.0 26 20-46 47-72 (377)
160 PF08897 DUF1841: Domain of un 44.5 13 0.00029 27.7 1.4 19 17-35 57-75 (137)
161 PF03720 UDPG_MGDP_dh_C: UDP-g 44.0 30 0.00064 24.2 3.1 29 23-51 17-45 (106)
162 cd00861 ProRS_anticodon_short 43.6 60 0.0013 21.5 4.5 36 9-44 2-39 (94)
163 PRK07313 phosphopantothenoylcy 42.8 47 0.001 25.9 4.3 39 10-49 3-41 (182)
164 PF05724 TPMT: Thiopurine S-me 42.4 29 0.00063 27.8 3.1 31 11-47 40-70 (218)
165 PF01975 SurE: Survival protei 42.3 26 0.00056 27.7 2.8 26 25-50 16-41 (196)
166 COG4081 Uncharacterized protei 42.1 42 0.00091 24.9 3.6 39 11-49 6-45 (148)
167 PLN02331 phosphoribosylglycina 41.9 68 0.0015 25.6 5.2 46 106-153 12-57 (207)
168 TIGR02195 heptsyl_trn_II lipop 41.7 2.1E+02 0.0045 23.9 10.1 40 10-49 1-42 (334)
169 COG2910 Putative NADH-flavin r 41.1 26 0.00056 27.9 2.5 22 27-48 15-36 (211)
170 PLN02939 transferase, transfer 40.6 58 0.0013 32.2 5.3 41 6-46 479-525 (977)
171 PRK09545 znuA high-affinity zi 40.6 1.3E+02 0.0028 25.4 7.0 45 105-155 239-285 (311)
172 PRK14099 glycogen synthase; Pr 40.5 54 0.0012 29.5 4.9 38 8-45 3-46 (485)
173 TIGR01007 eps_fam capsular exo 40.0 68 0.0015 24.8 4.9 39 9-47 17-57 (204)
174 cd01983 Fer4_NifH The Fer4_Nif 40.0 81 0.0018 20.2 4.7 33 11-43 2-34 (99)
175 cd02034 CooC The accessory pro 39.7 80 0.0017 22.5 4.8 37 10-46 1-37 (116)
176 TIGR02201 heptsyl_trn_III lipo 39.6 2.3E+02 0.005 23.8 10.2 42 10-51 1-44 (344)
177 COG1519 KdtA 3-deoxy-D-manno-o 39.3 2.8E+02 0.0061 24.7 11.8 115 10-168 50-170 (419)
178 cd01017 AdcA Metal binding pro 39.3 1.2E+02 0.0027 24.9 6.6 44 105-154 207-252 (282)
179 PRK09620 hypothetical protein; 39.1 33 0.00072 27.7 3.0 26 18-45 27-52 (229)
180 TIGR02852 spore_dpaB dipicolin 39.1 51 0.0011 25.9 4.0 52 129-180 100-154 (187)
181 PRK13011 formyltetrahydrofolat 39.0 67 0.0014 27.0 4.9 45 104-152 100-144 (286)
182 PF01380 SIS: SIS domain SIS d 38.7 50 0.0011 23.2 3.7 38 12-49 56-93 (131)
183 TIGR00236 wecB UDP-N-acetylglu 38.2 87 0.0019 26.5 5.7 29 123-151 85-116 (365)
184 COG2109 BtuR ATP:corrinoid ade 37.9 2.1E+02 0.0045 22.8 8.6 37 7-43 27-63 (198)
185 PRK00881 purH bifunctional pho 37.8 1.5E+02 0.0033 27.2 7.2 28 24-53 16-43 (513)
186 PF09001 DUF1890: Domain of un 37.4 64 0.0014 24.1 4.0 33 22-54 12-45 (139)
187 KOG2585 Uncharacterized conser 37.3 63 0.0014 28.9 4.6 38 5-45 263-302 (453)
188 PRK06732 phosphopantothenate-- 37.1 35 0.00076 27.5 2.9 20 26-45 30-49 (229)
189 PF03796 DnaB_C: DnaB-like hel 37.0 95 0.0021 25.1 5.5 41 11-51 22-63 (259)
190 PF01497 Peripla_BP_2: Peripla 37.0 1.4E+02 0.003 23.2 6.4 33 124-156 60-94 (238)
191 PF03853 YjeF_N: YjeF-related 36.6 39 0.00085 25.7 3.0 37 6-44 23-60 (169)
192 TIGR00064 ftsY signal recognit 36.5 1E+02 0.0023 25.5 5.7 39 9-47 73-111 (272)
193 PRK12311 rpsB 30S ribosomal pr 36.2 23 0.00049 30.4 1.7 32 124-155 152-185 (326)
194 PF01210 NAD_Gly3P_dh_N: NAD-d 36.1 38 0.00082 25.4 2.8 21 26-46 12-32 (157)
195 PF01555 N6_N4_Mtase: DNA meth 36.0 54 0.0012 25.3 3.8 42 105-154 179-222 (231)
196 cd03115 SRP The signal recogni 36.0 98 0.0021 23.1 5.1 38 11-48 3-40 (173)
197 COG1255 Uncharacterized protei 35.9 38 0.00081 24.7 2.5 20 25-44 25-44 (129)
198 TIGR02113 coaC_strep phosphopa 35.9 60 0.0013 25.1 3.9 34 16-49 7-40 (177)
199 PRK10481 hypothetical protein; 35.6 74 0.0016 25.8 4.5 46 106-157 170-218 (224)
200 PLN02891 IMP cyclohydrolase 35.5 1.8E+02 0.004 26.8 7.3 43 25-80 35-77 (547)
201 PTZ00445 p36-lilke protein; Pr 34.9 34 0.00074 27.6 2.4 28 20-47 74-102 (219)
202 PF07015 VirC1: VirC1 protein; 34.4 95 0.0021 25.3 4.9 38 12-49 5-43 (231)
203 smart00851 MGS MGS-like domain 34.1 56 0.0012 21.9 3.2 26 25-52 2-27 (90)
204 TIGR02193 heptsyl_trn_I lipopo 34.0 80 0.0017 26.2 4.7 42 10-51 1-44 (319)
205 PF03205 MobB: Molybdopterin g 33.7 98 0.0021 22.8 4.6 36 9-44 1-36 (140)
206 PRK05973 replicative DNA helic 33.6 99 0.0021 25.2 5.0 43 10-52 66-108 (237)
207 PF10087 DUF2325: Uncharacteri 33.6 1.1E+02 0.0024 20.8 4.6 35 125-159 51-89 (97)
208 COG4088 Predicted nucleotide k 33.4 51 0.0011 26.9 3.1 110 11-164 4-119 (261)
209 PF00448 SRP54: SRP54-type pro 32.8 81 0.0017 24.7 4.3 39 10-48 3-41 (196)
210 PF05728 UPF0227: Uncharacteri 32.5 1.3E+02 0.0027 23.5 5.3 34 126-159 61-95 (187)
211 cd00860 ThrRS_anticodon ThrRS 32.4 1.1E+02 0.0024 19.8 4.4 35 10-45 3-37 (91)
212 TIGR00421 ubiX_pad polyprenyl 32.2 76 0.0017 24.6 4.0 26 26-51 16-41 (181)
213 cd01019 ZnuA Zinc binding prot 32.1 2.4E+02 0.0053 23.3 7.3 45 105-155 215-261 (286)
214 PRK05647 purN phosphoribosylgl 32.1 1.4E+02 0.003 23.6 5.5 46 106-153 14-59 (200)
215 TIGR00639 PurN phosphoribosylg 32.1 1.4E+02 0.0031 23.3 5.5 30 124-153 29-58 (190)
216 PRK00771 signal recognition pa 31.8 1.2E+02 0.0027 27.1 5.6 42 8-49 95-136 (437)
217 COG0763 LpxB Lipid A disacchar 31.7 3.1E+02 0.0067 24.2 7.9 44 105-155 72-121 (381)
218 PRK03359 putative electron tra 31.7 92 0.002 25.7 4.5 31 124-154 112-148 (256)
219 PRK09361 radB DNA repair and r 31.7 1.2E+02 0.0025 23.9 5.1 35 11-45 26-60 (225)
220 PRK06222 ferredoxin-NADP(+) re 31.6 67 0.0015 26.5 3.8 39 9-49 99-137 (281)
221 TIGR00745 apbA_panE 2-dehydrop 31.6 39 0.00085 27.6 2.4 26 27-52 5-30 (293)
222 cd01965 Nitrogenase_MoFe_beta_ 31.6 1E+02 0.0022 27.2 5.1 41 123-163 222-264 (428)
223 TIGR01425 SRP54_euk signal rec 31.4 1.1E+02 0.0024 27.3 5.3 41 9-49 101-141 (429)
224 cd02032 Bchl_like This family 31.3 97 0.0021 25.1 4.7 37 10-46 2-38 (267)
225 PF06925 MGDG_synth: Monogalac 31.3 1.9E+02 0.0041 21.7 6.0 44 103-155 77-126 (169)
226 TIGR02699 archaeo_AfpA archaeo 31.2 81 0.0017 24.5 3.9 34 16-49 6-41 (174)
227 PRK10964 ADP-heptose:LPS hepto 31.1 86 0.0019 26.2 4.4 41 9-49 1-43 (322)
228 cd01425 RPS2 Ribosomal protein 31.0 28 0.00061 27.3 1.3 34 123-156 126-161 (193)
229 PF02142 MGS: MGS-like domain 30.9 51 0.0011 22.4 2.5 27 25-53 2-28 (95)
230 PF13460 NAD_binding_10: NADH( 30.8 51 0.0011 24.6 2.8 22 26-47 12-33 (183)
231 cd01981 Pchlide_reductase_B Pc 30.8 91 0.002 27.5 4.7 27 123-152 369-395 (430)
232 TIGR00655 PurU formyltetrahydr 30.8 1.1E+02 0.0023 25.7 4.8 46 104-153 95-140 (280)
233 cd02067 B12-binding B12 bindin 30.6 86 0.0019 22.0 3.8 38 7-44 49-87 (119)
234 PLN00016 RNA-binding protein; 30.4 67 0.0014 27.6 3.7 38 7-46 51-90 (378)
235 cd01141 TroA_d Periplasmic bin 30.2 88 0.0019 23.6 4.0 30 124-153 69-100 (186)
236 TIGR00176 mobB molybdopterin-g 30.1 1.2E+02 0.0026 22.7 4.7 35 11-45 2-36 (155)
237 PF02558 ApbA: Ketopantoate re 30.0 49 0.0011 24.1 2.5 26 27-52 12-37 (151)
238 cd00395 Tyr_Trp_RS_core cataly 29.9 51 0.0011 27.4 2.8 24 20-44 16-39 (273)
239 PF02374 ArsA_ATPase: Anion-tr 29.7 95 0.0021 26.2 4.4 40 10-49 2-42 (305)
240 PRK06249 2-dehydropantoate 2-r 29.5 86 0.0019 26.3 4.2 36 6-46 3-38 (313)
241 TIGR02329 propionate_PrpR prop 29.5 1.4E+02 0.0031 27.3 5.8 42 104-154 131-172 (526)
242 TIGR03840 TMPT_Se_Te thiopurin 29.3 67 0.0014 25.6 3.3 31 11-47 37-67 (213)
243 PF09140 MipZ: ATPase MipZ; I 29.2 1E+02 0.0022 25.6 4.3 39 10-48 1-41 (261)
244 PLN02828 formyltetrahydrofolat 28.9 1.5E+02 0.0032 24.7 5.4 48 104-153 81-131 (268)
245 PRK13010 purU formyltetrahydro 28.9 1.2E+02 0.0026 25.5 4.9 46 105-154 105-150 (289)
246 PRK05920 aromatic acid decarbo 28.7 91 0.002 24.8 3.9 42 9-51 4-45 (204)
247 cd01124 KaiC KaiC is a circadi 28.5 1.6E+02 0.0035 21.9 5.3 41 11-51 2-42 (187)
248 TIGR03087 stp1 sugar transfera 28.4 42 0.00092 28.8 2.2 33 14-47 8-41 (397)
249 PRK13982 bifunctional SbtC-lik 28.2 55 0.0012 29.6 2.9 38 9-46 257-306 (475)
250 PF01695 IstB_IS21: IstB-like 27.9 1.1E+02 0.0023 23.6 4.1 46 8-53 47-92 (178)
251 COG0300 DltE Short-chain dehyd 27.8 57 0.0012 27.1 2.7 34 9-45 6-39 (265)
252 PRK06849 hypothetical protein; 27.7 1.4E+02 0.0029 25.8 5.2 36 8-47 4-39 (389)
253 cd00532 MGS-like MGS-like doma 27.6 1.2E+02 0.0026 21.3 4.1 29 23-53 12-40 (112)
254 PRK10867 signal recognition pa 27.5 1.5E+02 0.0033 26.5 5.5 41 9-49 101-142 (433)
255 PF02702 KdpD: Osmosensitive K 27.5 1.3E+02 0.0027 24.2 4.4 41 7-47 4-44 (211)
256 TIGR00679 hpr-ser Hpr(Ser) kin 27.4 3.9E+02 0.0084 22.8 8.1 51 105-160 69-121 (304)
257 cd03109 DTBS Dethiobiotin synt 27.4 1.3E+02 0.0029 21.7 4.4 35 12-46 3-37 (134)
258 PRK13354 tyrosyl-tRNA syntheta 27.3 73 0.0016 28.2 3.4 27 19-46 49-75 (410)
259 cd01122 GP4d_helicase GP4d_hel 27.2 1.6E+02 0.0034 23.8 5.2 42 10-51 32-74 (271)
260 PLN03050 pyridoxine (pyridoxam 27.2 62 0.0013 26.5 2.8 34 9-44 61-95 (246)
261 TIGR01675 plant-AP plant acid 27.1 71 0.0015 26.0 3.1 25 23-47 123-147 (229)
262 cd03809 GT1_mtfB_like This fam 27.1 56 0.0012 26.7 2.6 28 20-47 16-43 (365)
263 PRK04940 hypothetical protein; 27.1 2E+02 0.0043 22.5 5.4 34 125-158 61-95 (180)
264 cd01452 VWA_26S_proteasome_sub 27.1 2.2E+02 0.0048 22.3 5.8 35 11-45 111-145 (187)
265 cd03789 GT1_LPS_heptosyltransf 27.1 1.3E+02 0.0029 24.4 4.8 42 10-51 1-44 (279)
266 PRK12342 hypothetical protein; 26.8 1E+02 0.0023 25.4 4.1 31 124-154 109-145 (254)
267 cd00805 TyrRS_core catalytic c 26.8 74 0.0016 26.3 3.2 27 19-46 16-42 (269)
268 TIGR01281 DPOR_bchL light-inde 26.7 1.3E+02 0.0029 24.2 4.8 36 10-45 2-37 (268)
269 TIGR03772 anch_rpt_subst ancho 26.7 1.5E+02 0.0032 27.0 5.3 42 105-152 407-452 (479)
270 COG0569 TrkA K+ transport syst 26.7 56 0.0012 26.2 2.4 23 26-48 13-35 (225)
271 cd01147 HemV-2 Metal binding p 26.6 1.1E+02 0.0023 24.4 4.1 31 124-154 74-107 (262)
272 TIGR02137 HSK-PSP phosphoserin 26.3 87 0.0019 24.6 3.4 43 102-150 68-110 (203)
273 PF02571 CbiJ: Precorrin-6x re 26.3 1.4E+02 0.003 24.5 4.7 35 9-49 1-35 (249)
274 TIGR01011 rpsB_bact ribosomal 26.2 40 0.00086 27.3 1.5 36 124-159 155-192 (225)
275 TIGR02700 flavo_MJ0208 archaeo 26.1 1.1E+02 0.0024 24.6 4.1 36 14-49 4-42 (234)
276 PRK14098 glycogen synthase; Pr 26.1 65 0.0014 29.0 3.0 38 8-45 5-48 (489)
277 PF01656 CbiA: CobQ/CobB/MinD/ 25.9 1.4E+02 0.0031 22.3 4.5 34 15-48 6-39 (195)
278 PRK00207 sulfur transfer compl 25.9 1.5E+02 0.0033 21.5 4.4 35 12-46 5-42 (128)
279 cd01916 ACS_1 Acetyl-CoA synth 25.9 68 0.0015 30.7 3.1 33 123-155 264-298 (731)
280 PRK14106 murD UDP-N-acetylmura 25.8 1.2E+02 0.0025 26.7 4.5 33 9-46 6-38 (450)
281 TIGR02114 coaB_strep phosphopa 25.8 67 0.0014 25.8 2.7 18 26-43 29-46 (227)
282 PF01316 Arg_repressor: Argini 25.8 35 0.00076 22.3 0.9 26 26-51 23-48 (70)
283 KOG1838 Alpha/beta hydrolase [ 25.6 1.9E+02 0.0041 25.8 5.6 40 7-46 124-164 (409)
284 TIGR03568 NeuC_NnaA UDP-N-acet 25.5 1.6E+02 0.0035 25.3 5.2 31 124-154 93-126 (365)
285 PF15013 CCSMST1: CCSMST1 fami 25.3 61 0.0013 21.7 2.0 29 146-174 28-56 (77)
286 PRK13256 thiopurine S-methyltr 25.2 80 0.0017 25.5 3.1 30 11-46 46-75 (226)
287 PRK08939 primosomal protein Dn 25.1 1.3E+02 0.0029 25.3 4.5 46 8-53 156-201 (306)
288 PRK14974 cell division protein 25.1 1.9E+02 0.004 24.9 5.5 41 8-48 140-180 (336)
289 COG0543 UbiB 2-polyprenylpheno 25.1 95 0.0021 25.3 3.5 29 22-50 119-149 (252)
290 PRK00090 bioD dithiobiotin syn 25.0 3.3E+02 0.0072 21.2 13.0 30 15-44 7-36 (222)
291 PRK05802 hypothetical protein; 24.9 93 0.002 26.4 3.6 38 10-49 174-211 (320)
292 TIGR00288 conserved hypothetic 24.9 97 0.0021 23.8 3.3 33 17-52 113-146 (160)
293 KOG1014 17 beta-hydroxysteroid 24.8 69 0.0015 27.3 2.7 32 10-44 50-81 (312)
294 PRK15411 rcsA colanic acid cap 24.8 1.7E+02 0.0036 23.0 4.8 32 123-154 46-86 (207)
295 PF01738 DLH: Dienelactone hyd 24.7 1.6E+02 0.0034 22.8 4.7 33 8-41 14-46 (218)
296 PRK04148 hypothetical protein; 24.6 75 0.0016 23.6 2.6 33 9-47 18-50 (134)
297 cd01966 Nitrogenase_NifN_1 Nit 24.5 1.4E+02 0.003 26.4 4.7 41 123-163 224-265 (417)
298 PRK06027 purU formyltetrahydro 24.4 1.8E+02 0.0039 24.3 5.2 45 105-153 101-145 (286)
299 PRK13604 luxD acyl transferase 24.1 1.9E+02 0.0041 24.6 5.2 33 10-42 38-70 (307)
300 cd00859 HisRS_anticodon HisRS 24.1 1.6E+02 0.0034 18.7 4.0 35 10-45 3-37 (91)
301 cd01020 TroA_b Metal binding p 24.1 1.8E+02 0.004 23.7 5.1 41 105-151 193-238 (264)
302 COG3433 Aryl carrier domain [S 24.0 38 0.00083 22.4 0.8 22 23-44 32-53 (74)
303 TIGR00640 acid_CoA_mut_C methy 23.9 1.1E+02 0.0025 22.3 3.4 39 6-44 51-90 (132)
304 PRK06067 flagellar accessory p 23.9 2.4E+02 0.0051 22.3 5.6 42 10-51 27-68 (234)
305 TIGR00959 ffh signal recogniti 23.9 2.1E+02 0.0046 25.5 5.7 41 9-49 100-141 (428)
306 PF03446 NAD_binding_2: NAD bi 23.8 78 0.0017 23.7 2.6 20 26-45 14-33 (163)
307 PF02780 Transketolase_C: Tran 23.8 1.7E+02 0.0038 20.6 4.4 35 8-44 9-43 (124)
308 PRK06522 2-dehydropantoate 2-r 23.5 1.2E+02 0.0027 24.7 4.1 31 10-45 2-32 (304)
309 TIGR03499 FlhF flagellar biosy 23.5 1.7E+02 0.0038 24.2 4.9 39 10-48 196-236 (282)
310 PF07355 GRDB: Glycine/sarcosi 23.5 1.9E+02 0.0041 25.1 5.1 30 123-152 79-118 (349)
311 PRK13255 thiopurine S-methyltr 23.4 1E+02 0.0022 24.6 3.3 31 11-47 40-70 (218)
312 PF02310 B12-binding: B12 bind 23.3 89 0.0019 21.7 2.8 35 7-41 50-84 (121)
313 COG3349 Uncharacterized conser 23.3 65 0.0014 29.3 2.4 24 26-49 13-36 (485)
314 PF13378 MR_MLE_C: Enolase C-t 23.1 2E+02 0.0043 19.7 4.5 46 123-168 17-69 (111)
315 cd05014 SIS_Kpsf KpsF-like pro 23.0 1.5E+02 0.0032 20.7 3.9 37 13-49 51-87 (128)
316 cd00550 ArsA_ATPase Oxyanion-t 22.8 1.5E+02 0.0033 24.1 4.3 38 11-48 3-40 (254)
317 PF02603 Hpr_kinase_N: HPr Ser 22.8 1.3E+02 0.0028 21.8 3.5 44 105-153 68-113 (127)
318 COG3046 Uncharacterized protei 22.7 1.1E+02 0.0023 27.5 3.4 26 21-46 51-76 (505)
319 TIGR01285 nifN nitrogenase mol 22.6 1.4E+02 0.003 26.5 4.3 40 123-162 235-275 (432)
320 PF00175 NAD_binding_1: Oxidor 22.6 1.1E+02 0.0024 20.6 3.0 27 22-48 8-36 (109)
321 COG2085 Predicted dinucleotide 22.4 95 0.0021 25.0 2.9 23 26-48 14-36 (211)
322 PRK06835 DNA replication prote 22.4 1.5E+02 0.0032 25.4 4.3 44 9-52 184-227 (329)
323 PRK08057 cobalt-precorrin-6x r 22.4 1.9E+02 0.0041 23.7 4.8 36 8-48 2-37 (248)
324 CHL00072 chlL photochlorophyll 22.4 1.9E+02 0.004 24.1 4.9 37 10-46 2-38 (290)
325 cd00806 TrpRS_core catalytic c 22.4 1E+02 0.0022 25.7 3.2 28 19-46 14-41 (280)
326 CHL00076 chlB photochlorophyll 22.4 1.5E+02 0.0033 27.0 4.6 35 106-152 365-399 (513)
327 TIGR03012 sulf_tusD_dsrE sulfu 22.3 2.1E+02 0.0045 20.7 4.6 34 12-45 4-40 (127)
328 PRK04020 rps2P 30S ribosomal p 22.3 1.2E+02 0.0027 24.1 3.6 31 124-154 114-146 (204)
329 PF13614 AAA_31: AAA domain; P 22.2 2.3E+02 0.0049 20.4 4.9 37 13-49 6-42 (157)
330 PLN02211 methyl indole-3-aceta 22.2 1.7E+02 0.0036 23.8 4.5 40 6-46 16-55 (273)
331 COG0784 CheY FOG: CheY-like re 22.2 2E+02 0.0043 19.6 4.4 36 124-160 51-93 (130)
332 TIGR01501 MthylAspMutase methy 22.2 2.7E+02 0.0058 20.6 5.1 43 9-51 2-44 (134)
333 cd00316 Oxidoreductase_nitroge 22.1 1.5E+02 0.0033 25.4 4.4 41 123-163 201-242 (399)
334 PRK06719 precorrin-2 dehydroge 22.1 99 0.0021 23.3 2.9 32 9-45 14-45 (157)
335 PF01266 DAO: FAD dependent ox 22.1 86 0.0019 25.8 2.8 20 26-45 12-31 (358)
336 cd06167 LabA_like LabA_like pr 22.0 1.3E+02 0.0028 21.8 3.5 31 10-45 102-132 (149)
337 PRK08309 short chain dehydroge 22.0 1.4E+02 0.0029 23.0 3.7 20 26-45 13-32 (177)
338 COG1817 Uncharacterized protei 22.0 5.2E+02 0.011 22.3 10.2 111 19-162 10-121 (346)
339 TIGR03453 partition_RepA plasm 22.0 1.7E+02 0.0037 25.3 4.7 39 8-46 103-143 (387)
340 PF03767 Acid_phosphat_B: HAD 21.9 84 0.0018 25.3 2.6 21 25-45 120-140 (229)
341 PLN02605 monogalactosyldiacylg 21.9 2.9E+02 0.0063 23.6 6.1 31 12-42 3-36 (382)
342 PRK13609 diacylglycerol glucos 21.9 1.8E+02 0.0039 24.7 4.8 31 123-153 103-135 (380)
343 cd01120 RecA-like_NTPases RecA 21.8 2.6E+02 0.0057 19.7 5.2 42 10-51 1-42 (165)
344 PRK06029 3-octaprenyl-4-hydrox 21.7 1.6E+02 0.0034 23.1 4.0 41 10-51 3-44 (185)
345 PRK12404 stage V sporulation p 21.7 5.2E+02 0.011 22.4 7.3 51 124-174 75-128 (334)
346 KOG0541 Alkyl hydroperoxide re 21.6 75 0.0016 24.4 2.1 32 15-46 57-88 (171)
347 PRK11889 flhF flagellar biosyn 21.6 2.3E+02 0.0051 25.4 5.4 41 8-48 241-281 (436)
348 PRK13869 plasmid-partitioning 21.5 1.9E+02 0.0041 25.4 4.9 36 11-46 124-160 (405)
349 PRK14494 putative molybdopteri 21.5 1.9E+02 0.004 23.5 4.5 33 11-43 4-36 (229)
350 TIGR03018 pepcterm_TyrKin exop 21.4 2.6E+02 0.0057 21.6 5.3 40 8-47 34-76 (207)
351 PHA02519 plasmid partition pro 21.2 2E+02 0.0043 25.2 5.0 35 9-43 106-142 (387)
352 PTZ00254 40S ribosomal protein 21.2 51 0.0011 27.2 1.2 30 125-154 119-150 (249)
353 TIGR01012 Sa_S2_E_A ribosomal 21.1 1.3E+02 0.0028 23.9 3.4 32 124-155 108-141 (196)
354 PRK14478 nitrogenase molybdenu 21.1 1.2E+02 0.0026 27.3 3.6 34 107-149 382-415 (475)
355 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.1 1.7E+02 0.0037 20.4 3.9 33 16-48 53-85 (126)
356 PLN02778 3,5-epimerase/4-reduc 20.9 1.7E+02 0.0037 24.2 4.4 34 6-43 7-40 (298)
357 cd01143 YvrC Periplasmic bindi 20.9 1.8E+02 0.004 21.8 4.3 31 124-154 60-91 (195)
358 PRK07077 hypothetical protein; 20.9 83 0.0018 25.7 2.4 32 124-155 135-166 (238)
359 TIGR03172 probable selenium-de 20.9 1.9E+02 0.0042 23.4 4.5 29 19-47 8-36 (232)
360 COG0503 Apt Adenine/guanine ph 20.9 2.8E+02 0.0061 21.3 5.3 30 123-152 52-83 (179)
361 PF02350 Epimerase_2: UDP-N-ac 20.8 1.8E+02 0.0038 25.0 4.5 41 105-154 57-100 (346)
362 PRK14476 nitrogenase molybdenu 20.8 1.7E+02 0.0038 26.1 4.6 37 123-159 235-272 (455)
363 PRK07533 enoyl-(acyl carrier p 20.6 1.9E+02 0.004 23.1 4.5 35 8-44 9-44 (258)
364 PF01494 FAD_binding_3: FAD bi 20.6 96 0.0021 25.5 2.8 19 26-44 14-32 (356)
365 cd01980 Chlide_reductase_Y Chl 20.6 1.7E+02 0.0036 25.8 4.4 27 123-152 349-375 (416)
366 TIGR03127 RuMP_HxlB 6-phospho 20.5 1.7E+02 0.0036 22.1 4.0 37 13-49 76-112 (179)
367 PRK13608 diacylglycerol glucos 20.5 2E+02 0.0043 24.8 4.9 42 106-153 92-135 (391)
368 PRK09922 UDP-D-galactose:(gluc 20.5 2E+02 0.0043 24.2 4.8 37 10-46 2-43 (359)
369 TIGR02655 circ_KaiC circadian 20.4 2.2E+02 0.0048 25.6 5.2 44 10-53 265-308 (484)
370 PRK11697 putative two-componen 20.4 2.1E+02 0.0045 22.2 4.6 34 123-156 46-84 (238)
371 TIGR01278 DPOR_BchB light-inde 20.3 1.8E+02 0.0039 26.5 4.6 26 123-151 363-388 (511)
372 cd03466 Nitrogenase_NifN_2 Nit 20.2 1.8E+02 0.004 25.7 4.6 41 123-163 221-265 (429)
373 PTZ00318 NADH dehydrogenase-li 20.2 1.4E+02 0.0031 26.1 3.9 37 6-47 8-44 (424)
374 PRK13236 nitrogenase reductase 20.2 2.4E+02 0.0052 23.4 5.1 37 9-45 6-43 (296)
375 COG0313 Predicted methyltransf 20.2 4.1E+02 0.0089 22.3 6.3 55 124-178 78-142 (275)
376 PF00148 Oxidored_nitro: Nitro 20.1 1.3E+02 0.0029 25.9 3.7 39 124-162 194-234 (398)
377 PF08357 SEFIR: SEFIR domain; 20.1 1.5E+02 0.0033 21.6 3.5 30 12-41 5-35 (150)
378 cd02069 methionine_synthase_B1 20.1 1.5E+02 0.0033 23.6 3.7 41 6-46 137-177 (213)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=99.96 E-value=2e-28 Score=215.80 Aligned_cols=168 Identities=23% Similarity=0.405 Sum_probs=127.2
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESS 86 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~ 86 (199)
.++||+++|||+|||+|||++|||+|+++|++|||+||+.+.+++.+.. ...++|+|+.+|+ +++++ .
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~-----~~~~~i~~v~lp~---g~~~~---~- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL-----DPKLGITFMSISD---GQDDD---P- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc-----CCCCCEEEEECCC---CCCCC---c-
Confidence 4579999999999999999999999999999999999999877665431 1113699999987 55533 1
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHHhHH
Q 046053 87 TTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQ 166 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~~~ 166 (199)
..++..+...+ ...+.+.++++++++... .+++|||+|++++|+.++|+++|||+++||+++++.++++++++
T Consensus 73 -~~~~~~l~~a~-~~~~~~~l~~ll~~l~~~-----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~ 145 (448)
T PLN02562 73 -PRDFFSIENSM-ENTMPPQLERLLHKLDED-----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIP 145 (448)
T ss_pred -cccHHHHHHHH-HHhchHHHHHHHHHhcCC-----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHH
Confidence 11333444445 446788999999887431 35799999999999999999999999999999999999999998
Q ss_pred HHHHcCCCCCCCcccccccccccccccCCCCC
Q 046053 167 TLKEKGLFPLKDESCLKKEYLDSVMDWIPGMA 198 (199)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~ 198 (199)
.+...+..+..+.. .+...+..+||+|
T Consensus 146 ~~~~~~~~~~~~~~-----~~~~~~~~~Pg~~ 172 (448)
T PLN02562 146 ELVRTGLISETGCP-----RQLEKICVLPEQP 172 (448)
T ss_pred HHhhcccccccccc-----ccccccccCCCCC
Confidence 87666543321110 1123344588886
No 2
>PLN02555 limonoid glucosyltransferase
Probab=99.96 E-value=2.5e-28 Score=216.27 Aligned_cols=154 Identities=25% Similarity=0.381 Sum_probs=117.1
Q ss_pred CCCCCCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCC-C---CCCCCCCeeEEEeCCCCC
Q 046053 1 MAISLHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGH-H---SLDGLPNFRFEAIPDGRD 76 (199)
Q Consensus 1 ~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~-~---~~~~~~~i~f~~l~~~~~ 76 (199)
|++. +.++||+++|||+|||+|||++|||+|+++|+.|||++|+.+..++.+.... + ...+...++|..+++
T Consensus 1 ~~~~-~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd--- 76 (480)
T PLN02555 1 MESE-SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED--- 76 (480)
T ss_pred CCCC-CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC---
Confidence 5554 6678999999999999999999999999999999999999887765421100 0 001112477777776
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchh
Q 046053 77 GLPASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISA 156 (199)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a 156 (199)
++|++.+ ...+...++..+ .+.+.+.++++++++.++ + .+++|||+|++++|+.++|+++|||+++||++++
T Consensus 77 glp~~~~---~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~--~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a 148 (480)
T PLN02555 77 GWAEDDP---RRQDLDLYLPQL-ELVGKREIPNLVKRYAEQ--G--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSC 148 (480)
T ss_pred CCCCCcc---cccCHHHHHHHH-HHhhhHHHHHHHHHHhcc--C--CCceEEEECCcchHHHHHHHHcCCCeEEeecccH
Confidence 7775421 122344455555 456778899999876431 2 4569999999999999999999999999999999
Q ss_pred HHHHHHHhHH
Q 046053 157 CSFKGLKQFQ 166 (199)
Q Consensus 157 ~~~~~~~~~~ 166 (199)
+.+++|++++
T Consensus 149 ~~~~~~~~~~ 158 (480)
T PLN02555 149 ACFSAYYHYY 158 (480)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.96 E-value=3.6e-28 Score=214.17 Aligned_cols=154 Identities=33% Similarity=0.505 Sum_probs=119.8
Q ss_pred CCCCCCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCC
Q 046053 1 MAISLHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPA 80 (199)
Q Consensus 1 ~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 80 (199)
|+- .+.++||+++|||+|||+|||++|||+|++||++|||++|+.+..+ .. ...++|+|..+|+ ++|+
T Consensus 1 ~~~-~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~------~~~~~i~~~~ip~---glp~ 68 (451)
T PLN02410 1 MEE-KPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS------DDFTDFQFVTIPE---SLPE 68 (451)
T ss_pred CCc-CCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc------cCCCCeEEEeCCC---CCCc
Confidence 552 3478899999999999999999999999999999999999987531 11 1113699999987 7776
Q ss_pred CCCCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHH
Q 046053 81 SSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFK 160 (199)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~ 160 (199)
+. .+.. +...++..+ .+.+.+.++++++++..+ .+ .+++|||+|++++|+.++|+++|||+++||+++++.++
T Consensus 69 ~~--~~~~-~~~~~~~~~-~~~~~~~~~~~L~~l~~~-~~--~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 69 SD--FKNL-GPIEFLHKL-NKECQVSFKDCLGQLVLQ-QG--NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred cc--cccc-CHHHHHHHH-HHHhHHHHHHHHHHHHhc-cC--CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 31 1111 222344445 566778899998876421 12 46899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHcCC
Q 046053 161 GLKQFQTLKEKGL 173 (199)
Q Consensus 161 ~~~~~~~l~~~~~ 173 (199)
++++++.+..++.
T Consensus 142 ~~~~~~~~~~~~~ 154 (451)
T PLN02410 142 CRSVFDKLYANNV 154 (451)
T ss_pred HHHHHHHHHhccC
Confidence 9999888877653
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.96 E-value=5.4e-28 Score=214.31 Aligned_cols=150 Identities=20% Similarity=0.244 Sum_probs=113.5
Q ss_pred CCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCC-CCCCCCCC
Q 046053 5 LHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGR-DGLPASSY 83 (199)
Q Consensus 5 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~-~~~~~~~~ 83 (199)
...++||+++|||+|||+|||++|||+|+++|++|||++|+.+.+++.+.. ...++++++.++.+. +++|++.+
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~-----~~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL-----SKHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc-----ccCCCeeEEeCCCCCcCCCCCCCc
Confidence 467899999999999999999999999999999999999999987765431 112468888877432 36666532
Q ss_pred CCCc-hhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHH
Q 046053 84 ESST-TQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGL 162 (199)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~ 162 (199)
+... ..+....+... ...+.+.++++++++. .+++|||+|++++|+.++|+++|||++.|||++|+.+++|
T Consensus 81 ~~~~~~~~~~~~~~~a-~~~~~~~~~~~l~~~~-------~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~ 152 (477)
T PLN02863 81 NVKDLPPSGFPLMIHA-LGELYAPLLSWFRSHP-------SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIM 152 (477)
T ss_pred ChhhcchhhHHHHHHH-HHHhHHHHHHHHHhCC-------CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHH
Confidence 1111 11211122222 2456677777776641 3689999999999999999999999999999999999999
Q ss_pred HhHHH
Q 046053 163 KQFQT 167 (199)
Q Consensus 163 ~~~~~ 167 (199)
+++++
T Consensus 153 ~~~~~ 157 (477)
T PLN02863 153 YSLWR 157 (477)
T ss_pred HHHhh
Confidence 99864
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.95 E-value=2.2e-27 Score=208.79 Aligned_cols=143 Identities=25% Similarity=0.376 Sum_probs=113.6
Q ss_pred CCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCC
Q 046053 5 LHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYE 84 (199)
Q Consensus 5 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~ 84 (199)
+..++||+++|||+|||+|||++|||+|+++|++|||++|+.+.+++... ..++|+|+.+++ ++|++..
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipd---glp~~~~- 70 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISD---GYDQGGF- 70 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCC---CCCCccc-
Confidence 34568999999999999999999999999999999999999887655321 113699999987 7876311
Q ss_pred CCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHHh
Q 046053 85 SSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQ 164 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~ 164 (199)
+...+...++..+ .+.+.+.++++++++..+ + .+++|||+|++++|+.++|+++|||++.||+++++.++++++
T Consensus 71 -~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--~--~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 71 -SSAGSVPEYLQNF-KTFGSKTVADIIRKHQST--D--NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred -ccccCHHHHHHHH-HHhhhHHHHHHHHHhhcc--C--CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 1222344555655 567788999999876431 1 345999999999999999999999999999999999877765
No 6
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.95 E-value=2.6e-27 Score=209.52 Aligned_cols=171 Identities=29% Similarity=0.469 Sum_probs=129.8
Q ss_pred CCCCCcceEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCC
Q 046053 3 ISLHYKVHAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPA 80 (199)
Q Consensus 3 ~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 80 (199)
++...++||+++|||++||+|||++||++|++| |++|||++++.+.+++++.. . .++++|+.+++ ++|+
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~-~~gi~fv~lp~---~~p~ 75 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----K-PDNIRFATIPN---VIPS 75 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----C-CCCEEEEECCC---CCCC
Confidence 455678999999999999999999999999999 99999999999887765431 1 24799999987 5554
Q ss_pred CCCCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHH
Q 046053 81 SSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFK 160 (199)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~ 160 (199)
+. ....+...++..+ .+.+.+.++++++++. .++||||+|.+++|+.++|+++|||++.||+++++.++
T Consensus 76 ~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~ 144 (459)
T PLN02448 76 EL---VRAADFPGFLEAV-MTKMEAPFEQLLDRLE-------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFS 144 (459)
T ss_pred cc---ccccCHHHHHHHH-HHHhHHHHHHHHHhcC-------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHH
Confidence 31 1122444455544 4567788888888763 36899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHcCCCCCCCcccccccccccccccCCCCC
Q 046053 161 GLKQFQTLKEKGLFPLKDESCLKKEYLDSVMDWIPGMA 198 (199)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~ 198 (199)
.+.+++++.+.+..+..... ..+..++++||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iPg~~ 177 (459)
T PLN02448 145 VFYHFDLLPQNGHFPVELSE-----SGEERVDYIPGLS 177 (459)
T ss_pred HHHHhhhhhhccCCCCcccc-----ccCCccccCCCCC
Confidence 99999877655444422210 0123354578875
No 7
>PLN02534 UDP-glycosyltransferase
Probab=99.95 E-value=6.5e-27 Score=207.70 Aligned_cols=154 Identities=29% Similarity=0.410 Sum_probs=111.8
Q ss_pred CCCCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCC--CCCCC
Q 046053 3 ISLHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGR--DGLPA 80 (199)
Q Consensus 3 ~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~--~~~~~ 80 (199)
.+.+.+.||+++|||+|||+|||++|||+|+++|+.|||++|+.+..++.+........+ .+|+|+.+|.+. +++|+
T Consensus 3 ~~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~-~~i~~~~lp~p~~~dglp~ 81 (491)
T PLN02534 3 VSKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESG-LPIRLVQIPFPCKEVGLPI 81 (491)
T ss_pred cccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccC-CCeEEEEcCCCCccCCCCC
Confidence 344556899999999999999999999999999999999999998765544311000111 249999998431 27776
Q ss_pred CCCCCCc-hh-hHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHH
Q 046053 81 SSYESST-TQ-DMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACS 158 (199)
Q Consensus 81 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~ 158 (199)
+.+.... .. +....+... ...+.+.+++++++.. .+++|||+|.+++|+.++|+++|||+++||+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~lL~~~~-------~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~ 153 (491)
T PLN02534 82 GCENLDTLPSRDLLRKFYDA-VDKLQQPLERFLEQAK-------PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFS 153 (491)
T ss_pred CccccccCCcHHHHHHHHHH-HHHhHHHHHHHHHhcC-------CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHH
Confidence 5221010 10 122112222 2456678888887531 468999999999999999999999999999999999
Q ss_pred HHHHHhH
Q 046053 159 FKGLKQF 165 (199)
Q Consensus 159 ~~~~~~~ 165 (199)
+++++++
T Consensus 154 ~~~~~~~ 160 (491)
T PLN02534 154 LLSSHNI 160 (491)
T ss_pred HHHHHHH
Confidence 9988766
No 8
>PLN02210 UDP-glucosyl transferase
Probab=99.95 E-value=5.2e-27 Score=207.17 Aligned_cols=144 Identities=23% Similarity=0.333 Sum_probs=113.2
Q ss_pred CCCCCCCcceEEEEcCCCcccHHHHHHHHHH--hhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCC
Q 046053 1 MAISLHYKVHAVCIPSPFQSHIKAMLQSAKL--LHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGL 78 (199)
Q Consensus 1 ~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~--La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~ 78 (199)
|++++..++||+++|||++||+|||++|||+ |++||++|||++|+.+.+++.+.. ...+.+++..+++ ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~---gl 72 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-----KPRRPVDLVFFSD---GL 72 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-----CCCCceEEEECCC---CC
Confidence 8888888899999999999999999999999 569999999999999876653211 1124588887776 77
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHH
Q 046053 79 PASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACS 158 (199)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~ 158 (199)
|++.+ .+...++..+ .+.+.+.+++++++ .++||||+|.+++|+.++|+++|||+++||++++++
T Consensus 73 p~~~~-----~~~~~~~~~~-~~~~~~~l~~~l~~---------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~ 137 (456)
T PLN02210 73 PKDDP-----RAPETLLKSL-NKVGAKNLSKIIEE---------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGA 137 (456)
T ss_pred CCCcc-----cCHHHHHHHH-HHhhhHHHHHHHhc---------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHH
Confidence 76521 1222344444 44555666666654 368999999999999999999999999999999999
Q ss_pred HHHHHhHHH
Q 046053 159 FKGLKQFQT 167 (199)
Q Consensus 159 ~~~~~~~~~ 167 (199)
++++.+++.
T Consensus 138 ~~~~~~~~~ 146 (456)
T PLN02210 138 YSVYYRYYM 146 (456)
T ss_pred HHHHHhhhh
Confidence 999988753
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=99.95 E-value=5.2e-27 Score=207.44 Aligned_cols=152 Identities=24% Similarity=0.292 Sum_probs=116.3
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCC-CCCCCCCCC
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGR-DGLPASSYE 84 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~-~~~~~~~~~ 84 (199)
+.++|||++|||+|||+|||++|||+|++||++|||++|+.+..++.+... ...+.|+|+.++.+. +++|++.+
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~----~~~~~i~~~~lp~p~~dglp~~~~- 78 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS----QLSSSITLVSFPLPSVPGLPSSAE- 78 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc----cCCCCeeEEECCCCccCCCCCCcc-
Confidence 456899999999999999999999999999999999999998866643210 111359999998442 36775421
Q ss_pred CCchhhH----HHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHH
Q 046053 85 SSTTQDM----YSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFK 160 (199)
Q Consensus 85 ~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~ 160 (199)
...+. ..++... .+.+.+.++++++++ +++|||+|.+++|+.++|+++|||+++||+++++.++
T Consensus 79 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~ 146 (472)
T PLN02670 79 --SSTDVPYTKQQLLKKA-FDLLEPPLTTFLETS---------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLS 146 (472)
T ss_pred --cccccchhhHHHHHHH-HHHhHHHHHHHHHhC---------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHH
Confidence 12222 1233333 466777888887653 5799999999999999999999999999999999999
Q ss_pred HHHhHHHHHHcCCC
Q 046053 161 GLKQFQTLKEKGLF 174 (199)
Q Consensus 161 ~~~~~~~l~~~~~~ 174 (199)
++++++.+.+.|.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (472)
T PLN02670 147 FIGPPSSLMEGGDL 160 (472)
T ss_pred HHhhhHhhhhcccC
Confidence 99877666555543
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.94 E-value=4.4e-26 Score=201.85 Aligned_cols=144 Identities=18% Similarity=0.220 Sum_probs=110.7
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhh-hcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCC-CCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLH-HKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGR-DGLPASSYE 84 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La-~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~-~~~~~~~~~ 84 (199)
.++||+++|||+|||++||++|||+|+ ++|++|||++|+.+..++.+.. .. .++|+++.+|++. +++|+. .
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~----~~-~~~i~~~~lp~p~~~glp~~-~- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF----LN-STGVDIVGLPSPDISGLVDP-S- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc----cc-CCCceEEECCCccccCCCCC-C-
Confidence 468999999999999999999999998 7899999999998876543221 01 1369999998642 245421 1
Q ss_pred CCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHHh
Q 046053 85 SSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQ 164 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~ 164 (199)
. +....+... .+.+.+.++++++++. .+++|||+|++++|+.++|+++|||+++||+++|+.++++.+
T Consensus 77 -~---~~~~~~~~~-~~~~~~~~~~~l~~~~-------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 144 (481)
T PLN02992 77 -A---HVVTKIGVI-MREAVPTLRSKIAEMH-------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIY 144 (481)
T ss_pred -c---cHHHHHHHH-HHHhHHHHHHHHHhcC-------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHh
Confidence 1 111122223 3566788888887752 368999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 046053 165 FQTLK 169 (199)
Q Consensus 165 ~~~l~ 169 (199)
+|.+.
T Consensus 145 ~~~~~ 149 (481)
T PLN02992 145 YPTLD 149 (481)
T ss_pred hhhhc
Confidence 88753
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=99.94 E-value=5.7e-26 Score=201.73 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=110.0
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcC----cEEEEEeCCchhh----hhhhhcCCCCCCCCCCeeEEEeCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKG----FHITCVNTEFNHR----CFLKSRGHHSLDGLPNFRFEAIPDGRDGL 78 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G----~~VT~~t~~~~~~----~~~~~~~~~~~~~~~~i~f~~l~~~~~~~ 78 (199)
.++|||++|||+|||+|||++|||+|+++| +.|||++++.+.. ++........ ...+.|+|+.+|+. .+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~--~~ 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-ASGLDIRFHHLPAV--EP 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-cCCCCEEEEECCCC--CC
Confidence 478999999999999999999999999996 8999999987532 2332210000 11125999999974 23
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHH
Q 046053 79 PASSYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACS 158 (199)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~ 158 (199)
|++ .+ +...++..+ .+.+.+.++++++++. .+++|||+|++++|+.++|+++|||++.||++++++
T Consensus 79 p~~---~e---~~~~~~~~~-~~~~~~~l~~~L~~l~-------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~ 144 (480)
T PLN00164 79 PTD---AA---GVEEFISRY-IQLHAPHVRAAIAGLS-------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAM 144 (480)
T ss_pred CCc---cc---cHHHHHHHH-HHhhhHHHHHHHHhcC-------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHH
Confidence 333 11 122344434 4677788888887752 367999999999999999999999999999999999
Q ss_pred HHHHHhHHHH
Q 046053 159 FKGLKQFQTL 168 (199)
Q Consensus 159 ~~~~~~~~~l 168 (199)
++++++++.+
T Consensus 145 ~~~~~~~~~~ 154 (480)
T PLN00164 145 LALMLRLPAL 154 (480)
T ss_pred HHHHhhhhhh
Confidence 9999999875
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.94 E-value=1.1e-25 Score=200.21 Aligned_cols=151 Identities=26% Similarity=0.312 Sum_probs=106.0
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcC--cEEEEEeCCchhhhhhh-hcCCCCCC--CCCCeeEEEeCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKG--FHITCVNTEFNHRCFLK-SRGHHSLD--GLPNFRFEAIPDGRDGLPAS 81 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~~t~~~~~~~~~~-~~~~~~~~--~~~~i~f~~l~~~~~~~~~~ 81 (199)
.+.|||++|||+|||++||++|||+|+++| +.|||++|+.+..++.. ........ ..++|+|+.+|++ .++.
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~ 77 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG---DQPT 77 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC---CCCc
Confidence 378999999999999999999999999998 99999999987643210 00000001 1236999999873 3221
Q ss_pred CCCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhcc---CCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHH
Q 046053 82 SYESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDS---SNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACS 158 (199)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~ 158 (199)
. ... ++..++ ..+.+.+++.++++..+ +.+ .+++|||+|++++|+.++|+++|||++.|||++|++
T Consensus 78 -~--~~~-~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~--~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~ 146 (481)
T PLN02554 78 -T--EDP-TFQSYI-----DNQKPKVRDAVAKLVDDSSTPSS--PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATF 146 (481)
T ss_pred -c--cch-HHHHHH-----HHHHHHHHHHHHHHHhhhccCCC--CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHH
Confidence 1 111 222222 33444555555544210 011 346999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHc
Q 046053 159 FKGLKQFQTLKEK 171 (199)
Q Consensus 159 ~~~~~~~~~l~~~ 171 (199)
++++++++.+...
T Consensus 147 ~~~~~~~~~~~~~ 159 (481)
T PLN02554 147 LGLQLHVQMLYDE 159 (481)
T ss_pred HHHHHhhhhhccc
Confidence 9999999886544
No 13
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.94 E-value=1.1e-25 Score=198.40 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=112.1
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhh-cCcEEEEEeCCch-hhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHH-KGFHITCVNTEFN-HRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYE 84 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~-~G~~VT~~t~~~~-~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~ 84 (199)
.++||+++|||++||+|||++|||+|++ +|++|||++|+.+ .+++... ....++++|+.+++ ++|++.+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-----~~~~~~i~~~~i~d---glp~g~~- 72 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-----HNNVENLSFLTFSD---GFDDGVI- 72 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-----CCCCCCEEEEEcCC---CCCCccc-
Confidence 3579999999999999999999999996 6999999999975 2222111 11124699999987 7776521
Q ss_pred CCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHHh
Q 046053 85 SSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQ 164 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~ 164 (199)
....+....+... ...+.+.++++++++... + .+++|||+|.+++|+.++|+++|||++.||+++|+.++++++
T Consensus 73 -~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~--~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 73 -SNTDDVQNRLVNF-ERNGDKALSDFIEANLNG--D--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred -cccccHHHHHHHH-HHhccHHHHHHHHHhhcc--C--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 1122343344444 567788999999886431 2 467999999999999999999999999999999999999988
Q ss_pred HH
Q 046053 165 FQ 166 (199)
Q Consensus 165 ~~ 166 (199)
++
T Consensus 147 ~~ 148 (455)
T PLN02152 147 YS 148 (455)
T ss_pred hh
Confidence 76
No 14
>PLN03004 UDP-glycosyltransferase
Probab=99.93 E-value=4.8e-25 Score=194.06 Aligned_cols=151 Identities=22% Similarity=0.231 Sum_probs=106.4
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcC----cEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKG----FHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASS 82 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G----~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~ 82 (199)
.+.|||++|||+|||+|||++|||+|+++| .+||+++++.+...+.+... ......++|+|+.+|+ +.+.+.
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~---~~~~~~ 77 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS-SVSSSFPSITFHHLPA---VTPYSS 77 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc-cccCCCCCeEEEEcCC---CCCCCC
Confidence 467999999999999999999999999998 44445555554332221100 0011124699999987 332110
Q ss_pred CCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHH
Q 046053 83 YESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGL 162 (199)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~ 162 (199)
. .....+...++... .+.+.+.++++++++.. + .+++|||+|++++|+.++|+++|||+++|||++|+.+++|
T Consensus 78 ~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~--~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~ 150 (451)
T PLN03004 78 S-STSRHHHESLLLEI-LCFSNPSVHRTLFSLSR---N--FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFS 150 (451)
T ss_pred c-cccccCHHHHHHHH-HHhhhHHHHHHHHhcCC---C--CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHH
Confidence 1 11112233233333 35677888999888632 1 4579999999999999999999999999999999999999
Q ss_pred HhHHHH
Q 046053 163 KQFQTL 168 (199)
Q Consensus 163 ~~~~~l 168 (199)
++++..
T Consensus 151 ~~~~~~ 156 (451)
T PLN03004 151 FYLPTI 156 (451)
T ss_pred HHHHhc
Confidence 998864
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.93 E-value=5.7e-25 Score=195.64 Aligned_cols=153 Identities=22% Similarity=0.327 Sum_probs=102.3
Q ss_pred CCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCC-C-CCCC-CCeeEEEeCCCCCCCCCC
Q 046053 5 LHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHH-S-LDGL-PNFRFEAIPDGRDGLPAS 81 (199)
Q Consensus 5 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~-~-~~~~-~~i~f~~l~~~~~~~~~~ 81 (199)
++.+.||+++|||++||+|||++||++|++||++|||++|+.+..++++..... . .... -.+.+..+|..+.++|++
T Consensus 2 ~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 2 NHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCC
Confidence 466789999999999999999999999999999999999999886665431100 0 0110 034444444211256654
Q ss_pred CCCCCc-----hhhHHHHHHHHH--HhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecc
Q 046053 82 SYESST-----TQDMYSLCENII--NDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTI 154 (199)
Q Consensus 82 ~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~ 154 (199)
.+.... ..+...+...++ ...+.+.+++++++ .++||||+|.+++|+.++|+++|||+|+||++
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~ 152 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET---------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGT 152 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCEEEECCcchhHHHHHHHhCCCeEEeecc
Confidence 211100 001112222220 13333444444432 37899999999999999999999999999999
Q ss_pred hhHHHHHHHhHH
Q 046053 155 SACSFKGLKQFQ 166 (199)
Q Consensus 155 ~a~~~~~~~~~~ 166 (199)
+++.+++++++.
T Consensus 153 ~a~~~~~~~~~~ 164 (482)
T PLN03007 153 GYFSLCASYCIR 164 (482)
T ss_pred cHHHHHHHHHHH
Confidence 999999887664
No 16
>PLN02207 UDP-glycosyltransferase
Probab=99.93 E-value=8.9e-25 Score=193.06 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=105.8
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcC--cEEEEEeCCchhh-hhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKG--FHITCVNTEFNHR-CFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSY 83 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~~t~~~~~~-~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~ 83 (199)
.++||+++|||+|||+|||++|||+|+++| +.|||++|+.+.. .+..... ......++|+|+.+|+.. ..+..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~-~~~~~-- 77 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK-SIASSQPFVRFIDVPELE-EKPTL-- 77 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh-hccCCCCCeEEEEeCCCC-CCCcc--
Confidence 357999999999999999999999999998 9999999998752 2221110 000112369999999631 11211
Q ss_pred CCCchhhHHHHHHHHHHhhh----hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHH
Q 046053 84 ESSTTQDMYSLCENIINDVL----LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSF 159 (199)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~ 159 (199)
....+....+... .+.+ .+.+++++++...+ + .+++|||+|.+++|+.++|+++|||+++||+++|+.+
T Consensus 78 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~--~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 78 --GGTQSVEAYVYDV-IEKNIPLVRNIVMDILSSLALD--G--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred --ccccCHHHHHHHH-HHhcchhHHHHHHHHHHHhccC--C--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHH
Confidence 1112333233223 2444 33455555543211 1 3569999999999999999999999999999999999
Q ss_pred HHHHhHHHHH
Q 046053 160 KGLKQFQTLK 169 (199)
Q Consensus 160 ~~~~~~~~l~ 169 (199)
+++++++.+.
T Consensus 151 ~~~~~~~~~~ 160 (468)
T PLN02207 151 AMMQYLADRH 160 (468)
T ss_pred HHHHHhhhcc
Confidence 9999988653
No 17
>PLN03015 UDP-glucosyl transferase
Probab=99.93 E-value=9.5e-25 Score=192.64 Aligned_cols=148 Identities=15% Similarity=0.196 Sum_probs=109.4
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhc-CcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCC-CCCCCCCCCC
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHK-GFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGR-DGLPASSYES 85 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~-~~~~~~~~~~ 85 (199)
++||+++|||+|||+|||++|||+|+++ |+.|||++|..+...+............++|+|+.+|++. +++++.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~---- 78 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEP---- 78 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCC----
Confidence 5799999999999999999999999987 9999999998766433111000101011259999998642 122110
Q ss_pred CchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCC-cEEEecchhHHHHHHHh
Q 046053 86 STTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLP-SALFFTISACSFKGLKQ 164 (199)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP-~v~~~~~~a~~~~~~~~ 164 (199)
. ......++. . .+.+.+.++++++++. .+++|||+|.+++|+.++|+++||| +++|++++++.+++++|
T Consensus 79 ~-~~~~~~~~~-~-~~~~~~~~~~~l~~l~-------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 79 D-ATIFTKMVV-K-MRAMKPAVRDAVKSMK-------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred C-ccHHHHHHH-H-HHhchHHHHHHHHhcC-------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 1 112223333 3 3677889999998763 3679999999999999999999999 69999999999999999
Q ss_pred HHHHH
Q 046053 165 FQTLK 169 (199)
Q Consensus 165 ~~~l~ 169 (199)
+|.+.
T Consensus 149 l~~~~ 153 (470)
T PLN03015 149 LPVLD 153 (470)
T ss_pred hhhhh
Confidence 98753
No 18
>PLN00414 glycosyltransferase family protein
Probab=99.93 E-value=7.9e-25 Score=192.74 Aligned_cols=139 Identities=22% Similarity=0.173 Sum_probs=102.8
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCC-CCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDG-RDGLPASSYES 85 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~-~~~~~~~~~~~ 85 (199)
.++||+++|||++||+|||++|||+|+++|++|||++|+.+..++++.. ...++++|+.++.+ .+++|++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-----~~~~~i~~~~i~lP~~dGLP~g~--- 74 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-----LFPDSIVFEPLTLPPVDGLPFGA--- 74 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-----cCCCceEEEEecCCCcCCCCCcc---
Confidence 4689999999999999999999999999999999999998876654321 11135888666532 12676652
Q ss_pred CchhhH----HHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHH
Q 046053 86 STTQDM----YSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKG 161 (199)
Q Consensus 86 ~~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~ 161 (199)
+...++ ...+... ...+.+.++++++. .+++|||+|+ ++|+.++|+++|||++.||+++++.+++
T Consensus 75 e~~~~l~~~~~~~~~~a-~~~l~~~l~~~L~~---------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 75 ETASDLPNSTKKPIFDA-MDLLRDQIEAKVRA---------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred cccccchhhHHHHHHHH-HHHHHHHHHHHHhc---------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 112222 1122222 24455566666543 3679999995 8999999999999999999999999999
Q ss_pred HHh
Q 046053 162 LKQ 164 (199)
Q Consensus 162 ~~~ 164 (199)
+++
T Consensus 144 ~~~ 146 (446)
T PLN00414 144 VLA 146 (446)
T ss_pred HhC
Confidence 887
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.92 E-value=2.8e-24 Score=190.90 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=103.9
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcC---cEEEEEeCCchhh-hhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKG---FHITCVNTEFNHR-CFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASS 82 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G---~~VT~~t~~~~~~-~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~ 82 (199)
+++||+++|||+|||+|||++|||+|+++| ..||++++..+.. ..+.... ......++|+|+.+|++. .+++.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~--~p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLK-SLIASEPRIRLVTLPEVQ--DPPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHh-hcccCCCCeEEEECCCCC--CCccc
Confidence 568999999999999999999999999999 4677777664432 1111000 000112469999999742 12210
Q ss_pred CCCCchhhHHHHHHHHHHhhhhHHHHHHHHHhhcc--CCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHH
Q 046053 83 YESSTTQDMYSLCENIINDVLLQPFLDLLAKLSDS--SNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFK 160 (199)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~ 160 (199)
+ .........+..+ .+.+.+.+++.++++..+ ..+ ..+++|||+|.+++|+.++|+++|||+++||+++|+.++
T Consensus 79 ~--~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~-~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 79 E--LFVKASEAYILEF-VKKMVPLVRDALSTLVSSRDESD-SVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred c--ccccchHHHHHHH-HHHHHHHHHHHHHHHHhhccccC-CCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 1 0001111122223 355666777777665311 001 015699999999999999999999999999999999999
Q ss_pred HHHhHHHH
Q 046053 161 GLKQFQTL 168 (199)
Q Consensus 161 ~~~~~~~l 168 (199)
++++++..
T Consensus 155 ~~~~~~~~ 162 (475)
T PLN02167 155 MMKYLPER 162 (475)
T ss_pred HHHHHHHh
Confidence 99998864
No 20
>PLN02208 glycosyltransferase family protein
Probab=99.92 E-value=3.8e-24 Score=188.25 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=103.1
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCC-CCCCCCCCCC
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDG-RDGLPASSYE 84 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~-~~~~~~~~~~ 84 (199)
+.++||+++|||++||+|||++|||+|+++|++|||+|++.+..++.+.. . ...+++|..++.+ .+++|++.+.
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~---a--~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN---L--FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc---C--CCCceEEEEeCCCCccCCCCCccc
Confidence 45799999999999999999999999999999999999998876654421 1 1125777776532 1267655210
Q ss_pred CCch-hhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHH
Q 046053 85 SSTT-QDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLK 163 (199)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~ 163 (199)
.... .++..++... .+.+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++|+.++ ++
T Consensus 77 ~~~l~~~l~~~~~~~-~~~~~~~l~~~L~~---------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~ 144 (442)
T PLN02208 77 TSDIPISMDNLLSEA-LDLTRDQVEAAVRA---------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HT 144 (442)
T ss_pred ccchhHHHHHHHHHH-HHHHHHHHHHHHhh---------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HH
Confidence 0001 1222222222 34555667776654 367999999 5899999999999999999999999875 66
Q ss_pred hHH
Q 046053 164 QFQ 166 (199)
Q Consensus 164 ~~~ 166 (199)
+++
T Consensus 145 ~~~ 147 (442)
T PLN02208 145 HVP 147 (442)
T ss_pred ccC
Confidence 654
No 21
>PLN02764 glycosyltransferase family protein
Probab=99.91 E-value=1.2e-23 Score=184.96 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=104.8
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCC
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYES 85 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~ 85 (199)
..++||+++|||+|||+|||++|||+|+++|++|||++|+.+..++.+. ......-.++++.+|.+ +++|++.+..
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~---~~~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL---NLFPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc---ccCCCCceEEEEECCCc-CCCCCccccc
Confidence 4579999999999999999999999999999999999999987655431 10111113667777732 2777652100
Q ss_pred -Cchhh-HHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHH
Q 046053 86 -STTQD-MYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLK 163 (199)
Q Consensus 86 -~~~~~-~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~ 163 (199)
....+ ...+..++ ..+.+.++++++++ +++|||+|+ ++|+.++|+++|||++.||+++|+.+++++
T Consensus 79 ~~~~~~~~~~~~~a~--~~~~~~~~~~l~~~---------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~ 146 (453)
T PLN02764 79 SEIPVTSADLLMSAM--DLTRDQVEVVVRAV---------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASML 146 (453)
T ss_pred ccCChhHHHHHHHHH--HHhHHHHHHHHHhC---------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHh
Confidence 00111 12233333 56678888888663 579999995 999999999999999999999999999986
Q ss_pred h
Q 046053 164 Q 164 (199)
Q Consensus 164 ~ 164 (199)
+
T Consensus 147 ~ 147 (453)
T PLN02764 147 V 147 (453)
T ss_pred c
Confidence 4
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.69 E-value=1.3e-16 Score=138.30 Aligned_cols=129 Identities=11% Similarity=0.069 Sum_probs=91.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCC-C--
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYE-S-- 85 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~-~-- 85 (199)
+||+++++|+.||++|++.||++|++|||+|+|++++.....++. .+++|+.+++. ++..... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~----------~G~~~~~~~~~---~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA----------AGLEFVPVGGD---PDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH----------cCCceeeCCCC---HHHHHhhhhhc
Confidence 589999999999999999999999999999999999987765543 26888887752 1110000 0
Q ss_pred -----CchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhH
Q 046053 86 -----STTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISAC 157 (199)
Q Consensus 86 -----~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~ 157 (199)
............+ .+.....+.++++.+.. .++||||+|.++.++..+|+++|||++.+++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (401)
T cd03784 68 AGLLLLGPGLLLGALRLL-RREAEAMLDDLVAAARD------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDT 137 (401)
T ss_pred ccccccchHHHHHHHHHH-HHHHHHHHHHHHHHhcc------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCC
Confidence 0001111122222 33344555566555432 58999999999999999999999999999887643
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.60 E-value=5.6e-15 Score=128.03 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=83.9
Q ss_pred EcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCc-hhhHH
Q 046053 14 IPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESST-TQDMY 92 (199)
Q Consensus 14 vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~-~~~~~ 92 (199)
+.+|+.||++|++.||++|+++||+||+++++.+.+.+++ .+++|+.+++. ++........ ..+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~----------~G~~~~~~~~~---~~~~~~~~~~~~~~~~ 67 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA----------AGAEFVLYGSA---LPPPDNPPENTEEEPI 67 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH----------cCCEEEecCCc---CccccccccccCcchH
Confidence 4689999999999999999999999999999998877654 26888888752 2110000000 01222
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecch
Q 046053 93 SLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 93 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~ 155 (199)
.+...+ .......+..+.+.+.+ .+|||||+|.++.|+..+|+++|||++.+.+..
T Consensus 68 ~~~~~~-~~~~~~~~~~l~~~~~~------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 68 DIIEKL-LDEAEDVLPQLEEAYKG------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcC------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 222223 23333344444444433 479999999999999999999999999987653
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=5.1e-13 Score=99.40 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=79.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQD 90 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~ 90 (199)
|++.+.++.||++|++.|+++|.+|||+|++.+.+...+.+++. +++|+.++... .++.. ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----------Gl~~~~~~~~~-~~~~~---~~~~~~ 66 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----------GLEFVPIPGDS-RLPRS---LEPLAN 66 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----------T-EEEESSSCG-GGGHH---HHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----------CceEEEecCCc-CcCcc---cchhhh
Confidence 68999999999999999999999999999999999888877542 79999987510 01100 000011
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhH
Q 046053 91 MYSLCENI-INDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISAC 157 (199)
Q Consensus 91 ~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~ 157 (199)
+....... ........+++...+.... .+.....++++.+.....+..+|+++|||++.....+-.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 67 LRRLARLIRGLEEAMRILARFRPDLVVA-AGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCCCCH-CTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhHHHHhhhhhHHHHHhhccCcchhhh-ccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11111100 0011112222221111000 000135778888888888899999999999998776543
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.22 E-value=1.4e-11 Score=109.62 Aligned_cols=151 Identities=30% Similarity=0.322 Sum_probs=92.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCC-C--CCCCeeEEEeCCCCCCCCCCCCC
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSL-D--GLPNFRFEAIPDGRDGLPASSYE 84 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~-~--~~~~i~f~~l~~~~~~~~~~~~~ 84 (199)
..|++++++|++||++|+++||++|+++||+||++++..+....... ..... . ....+++....+ +++.+..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPD---GLPEGWE- 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhh---hhccchH-
Confidence 68999999999999999999999999999999999998876543211 00000 0 000111111111 3332200
Q ss_pred CCchhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhC-CCcEEEecchhHHHHHHH
Q 046053 85 SSTTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLG-LPSALFFTISACSFKGLK 163 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lg-IP~v~~~~~~a~~~~~~~ 163 (199)
............+ .......+++....+... .+ .++||+|+|.+..|...+|.+.+ |+...+++.++...++..
T Consensus 80 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~ 154 (496)
T KOG1192|consen 80 -DDDLDISESLLEL-NKTCEDLLRDPLEKLLLL-KS--EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGL 154 (496)
T ss_pred -HHHHHHHHHHHHH-HHHHHHHHhchHHHHHHh-hc--CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCC
Confidence 0000111111222 333444455544333221 11 34999999999999998998885 999999999999988877
Q ss_pred hHHHH
Q 046053 164 QFQTL 168 (199)
Q Consensus 164 ~~~~l 168 (199)
+.+..
T Consensus 155 ~~~~~ 159 (496)
T KOG1192|consen 155 PSPLS 159 (496)
T ss_pred cCccc
Confidence 65543
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.72 E-value=2.4e-08 Score=87.52 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=48.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCC
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPD 73 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 73 (199)
+++|+++..|..||++|++.|+++|.++||+|+|++++...+.+++. ++.|..++.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----------g~~f~~~~~ 56 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----------GLAFVAYPI 56 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----------Ccceeeccc
Confidence 46899999999999999999999999999999999999999887664 466666654
No 27
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.63 E-value=2.6e-07 Score=83.22 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=75.6
Q ss_pred ceEEEE-cCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCC---CCCC
Q 046053 9 VHAVCI-PSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPA---SSYE 84 (199)
Q Consensus 9 ~hvv~v-p~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~---~~~~ 84 (199)
.+|+++ |.++.+|++-+-.++++|++|||+||++++..... ... ....+++.+.++...+.... ..+.
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS-------HLCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc-------CCCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 347655 99999999999999999999999999998764221 110 01246776665421001000 0000
Q ss_pred C---CchhhH----HHHHHHHH--Hh-hh-hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHh-CCCcEEEe
Q 046053 85 S---STTQDM----YSLCENII--ND-VL-LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRL-GLPSALFF 152 (199)
Q Consensus 85 ~---~~~~~~----~~~~~~~~--~~-~~-~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-gIP~v~~~ 152 (199)
. ....+. ......+. .+ .+ .+.+.+++++ ++ .++|+||+|.+...+..+|+.+ |+|.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~------~kFDlvi~e~~~~c~~~la~~~~~~p~i~~s 165 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KN------NKFDLLVTEAFLDYPLVFSHLFGDAPVIQIS 165 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CC------CceeEEEecccchhHHHHHHHhCCCCEEEEc
Confidence 0 000000 00111110 11 11 2344444431 12 5799999998888888899999 99977666
Q ss_pred cchh
Q 046053 153 TISA 156 (199)
Q Consensus 153 ~~~a 156 (199)
+...
T Consensus 166 s~~~ 169 (507)
T PHA03392 166 SGYG 169 (507)
T ss_pred CCCC
Confidence 6443
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.57 E-value=1.4e-06 Score=73.21 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=71.6
Q ss_pred ceEEEEcC-CCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCc
Q 046053 9 VHAVCIPS-PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESST 87 (199)
Q Consensus 9 ~hvv~vp~-p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~ 87 (199)
+||++... -|.||+.-++.|+++| |||+|+|++.....+.+.. .+....++.. .+... ...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~---~~~ 62 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----------RFPVREIPGL--GPIQE---NGR 62 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----------ccCEEEccCc--eEecc---CCc
Confidence 35666555 4899999999999999 6999999998855433311 2334444331 11110 010
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhH
Q 046053 88 TQDMYSLCENI-INDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISAC 157 (199)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~ 157 (199)
......+.... ........++++.+.+.+ .+||+||+|. .+.+...|+..|||++.+......
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 63 LDRWKTVRNNIRWLARLARRIRREIRWLRE------FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHHh------cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 11111111100 001222334455444543 4799999994 555678889999999986665543
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.44 E-value=3.2e-06 Score=71.64 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=67.4
Q ss_pred EEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCee-EEEeCCCCCCCCCCCCCCCchhh
Q 046053 12 VCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFR-FEAIPDGRDGLPASSYESSTTQD 90 (199)
Q Consensus 12 v~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~-f~~l~~~~~~~~~~~~~~~~~~~ 90 (199)
+.+...|.||+.|.+.++++|.+ ||+|+|+++.. ...+.+. .++. +...+...-..+.+ .-+
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~-~~~~~~~---------~~~~~~~~~p~~~~~~~~~------~~~ 66 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR-SKNYISK---------YGFKVFETFPGIKLKGEDG------KVN 66 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC-HHHhhhh---------hcCcceeccCCceEeecCC------cCc
Confidence 44677888999999999999999 99999998776 3333221 1222 22222100000111 001
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecch
Q 046053 91 MYSLCENIINDVL-LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 91 ~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~ 155 (199)
....+... ..+ ...+.+..+.+.+ .+||+||+| +-..+..+|+.+|||.+.+.-+.
T Consensus 67 ~~~~l~~~--~~~~~~~~~~~~~~l~~------~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 67 IVKTLRNK--EYSPKKAIRREINIIRE------YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHh------cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 11111111 111 1223333333333 479999999 56667889999999999765543
No 30
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.24 E-value=4.6e-06 Score=74.58 Aligned_cols=55 Identities=27% Similarity=0.366 Sum_probs=29.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPD 73 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 73 (199)
+|+++|+ +.||+++|..++++|++|||+||++++.... .+... ...++++..++.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~ 56 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPD 56 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE--
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcC
Confidence 5788885 7899999999999999999999999876432 12211 123677777765
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.87 E-value=0.00052 Score=59.10 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=74.0
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQ 89 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~ 89 (199)
+|++..-..-||+.|.+.+|++|.++||+|+|+++....+. . ..+. .++.+..++.. ++.-. .
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~----l~~~-~g~~~~~~~~~--~l~~~----~--- 65 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---T----IIEK-ENIPYYSISSG--KLRRY----F--- 65 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---c----cCcc-cCCcEEEEecc--CcCCC----c---
Confidence 57777777779999999999999999999999997754421 1 0011 25777777631 23211 0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchh--HHHHHHHhCCCcEEEecchhHHHHH
Q 046053 90 DMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TITAAQRLGLPSALFFTISACSFKG 161 (199)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~~a~~~~~ 161 (199)
.+..+ ... .... ..+....+-+++ .+||+||....... +..+|+-+|+|.++.-......++.
T Consensus 66 ~~~~~-~~~-~~~~-~~~~~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~n 130 (352)
T PRK12446 66 DLKNI-KDP-FLVM-KGVMDAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLAN 130 (352)
T ss_pred hHHHH-HHH-HHHH-HHHHHHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHH
Confidence 11111 111 1111 112222222322 48999999753332 4677788899998866655444443
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.0037 Score=54.04 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=74.0
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCc-EEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCch
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGF-HITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTT 88 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~ 88 (199)
.|++.-..+-||+.|.+.|+++|.++|+ +|.++.+....+.... + ...+.+..++.. ++... ...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~-~~~~~~~~I~~~--~~~~~----~~~ 67 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------K-QYGIEFELIPSG--GLRRK----GSL 67 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------c-ccCceEEEEecc--ccccc----CcH
Confidence 4667777788999999999999999999 5777766554432211 1 136778777652 22211 111
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecC-C-chhHHHHHHHhCCCcEEEecchhHHHHH
Q 046053 89 QDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDD-F-MAFTITAAQRLGLPSALFFTISACSFKG 161 (199)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~-~-~~~~~~vA~~lgIP~v~~~~~~a~~~~~ 161 (199)
..+...+... . .....+.++++ .+||+||.=. + ...+...|..+|||.+.--+-....++.
T Consensus 68 ~~~~~~~~~~--~-~~~~a~~il~~---------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~an 130 (357)
T COG0707 68 KLLKAPFKLL--K-GVLQARKILKK---------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLAN 130 (357)
T ss_pred HHHHHHHHHH--H-HHHHHHHHHHH---------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhH
Confidence 1111111111 1 11223445555 4799999943 2 3335667788899999866655444443
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.20 E-value=0.012 Score=49.58 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=33.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+|+++..-..||+...+.|+++|.++||+|++++.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 7888998889999988899999999999999998643
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.17 E-value=0.011 Score=49.82 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=66.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQ 89 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~ 89 (199)
+|++...-.-||....+.|++.|.++||+|++++...... ... ....++++..++.. .+... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~-------~~~~~~~~~~~~~~--~~~~~----~~~~ 66 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARL-------VPKAGIPLHTIPVG--GLRRK----GSLK 66 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhc-------ccccCCceEEEEec--CcCCC----ChHH
Confidence 4677777777999999999999999999999998764321 110 01124666666531 12111 1111
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecC--CchhHHHHHHHhCCCcEEE
Q 046053 90 DMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDD--FMAFTITAAQRLGLPSALF 151 (199)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~--~~~~~~~vA~~lgIP~v~~ 151 (199)
.+..++... .. ...+..++++ .+||+|++.. ...++..+|+..|+|.+..
T Consensus 67 ~~~~~~~~~--~~-~~~~~~~i~~---------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 67 KLKAPFKLL--KG-VLQARKILKK---------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHh---------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 111111101 11 1123333333 4799999875 2333566778889999864
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.16 E-value=0.012 Score=50.00 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=67.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCch
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTT 88 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~ 88 (199)
++|+++....-||..-++.|++.|.++||+|++++.+........ . ..+++++.++.. ++... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~-------~-~~g~~~~~~~~~--~~~~~----~-- 65 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLV-------P-KAGIEFHFIPSG--GLRRK----G-- 65 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcc-------c-cCCCcEEEEecc--CcCCC----C--
Confidence 578888876779999999999999999999999988653211100 0 025666665431 22111 0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecC-Cchh-HHHHHHHhCCCcEEE
Q 046053 89 QDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDD-FMAF-TITAAQRLGLPSALF 151 (199)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~-~~~~-~~~vA~~lgIP~v~~ 151 (199)
....+. .. .. ....+..+.+.+++ .+||+|++.. ...| +..+++..++|.+..
T Consensus 66 -~~~~l~-~~-~~-~~~~~~~~~~~ik~------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 66 -SLANLK-AP-FK-LLKGVLQARKILKR------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred -hHHHHH-HH-HH-HHHHHHHHHHHHHh------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 011111 11 01 01112223223322 4799999996 3334 355567778999865
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.96 E-value=0.012 Score=51.37 Aligned_cols=38 Identities=5% Similarity=-0.083 Sum_probs=33.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
++|++...-.-||+.|. .|+++|.++|.+++|+.....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~ 43 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP 43 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH
Confidence 67888888888999999 999999999999999987643
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.30 E-value=0.097 Score=45.27 Aligned_cols=112 Identities=14% Similarity=0.046 Sum_probs=60.4
Q ss_pred EEEE--cCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCch
Q 046053 11 AVCI--PSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTT 88 (199)
Q Consensus 11 vv~v--p~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~ 88 (199)
|+|+ .||+| +-+||+.|+++||+|+++|...... . .. +++.+.++... .+.. ......
T Consensus 2 il~~~~~~p~~-----~~~la~~L~~~G~~v~~~~~~~~~~-~---------~~--~v~~~~~~~~~--~~~~-~~~~~~ 61 (396)
T cd03818 2 ILFVHQNFPGQ-----FRHLAPALAAQGHEVVFLTEPNAAP-P---------PG--GVRVVRYRPPR--GPTS-GTHPYL 61 (396)
T ss_pred EEEECCCCchh-----HHHHHHHHHHCCCEEEEEecCCCCC-C---------CC--CeeEEEecCCC--CCCC-CCCccc
Confidence 4554 45554 6789999999999999998876432 1 11 46666665321 0010 000001
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHh-CCCcEEEe
Q 046053 89 QDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRL-GLPSALFF 152 (199)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-gIP~v~~~ 152 (199)
...... . ......++.+ ..+..+ + .+||+|++-...+++..+.+.+ ++|.+.+.
T Consensus 62 ~~~~~~---~--~~~~~~~~~~-~~~~~~--~--~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 62 REFEEA---V--LRGQAVARAL-LALRAK--G--FRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred hhHHHH---H--HHHHHHHHHH-HHHHhc--C--CCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 111111 1 1111112222 233221 2 5799999997666677777775 58888754
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.78 E-value=0.16 Score=42.29 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 16 SPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 16 ~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
--|.||+.=++.||++|.++|++|+|++.....
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 347899999999999999999999999987544
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.63 E-value=0.14 Score=43.77 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=31.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
++|++...-.-||+.|.+ ++++|.++++++.++....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 478888888899999999 9999999888777776544
No 40
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.60 E-value=0.36 Score=42.32 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=33.5
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
..+|.++.....|+-.=+..+|+.|+++||+||+++...
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 457888888888888888999999999999999998754
No 41
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.45 E-value=0.14 Score=43.50 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
-|+-..+.+|++.|+++||+|++++....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCC
Confidence 37888999999999999999999987543
No 42
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.02 E-value=0.42 Score=41.46 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=26.8
Q ss_pred ceEEEEcC---CCcc-cHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 9 VHAVCIPS---PFQS-HIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 9 ~hvv~vp~---p~~G-H~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
++|++++. |-.| =-.-+.+|++.|.++||+|+++|+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 35777762 4322 01125799999999999999999864
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=94.97 E-value=0.57 Score=38.55 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=26.5
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
-|+-.-...|++.|+++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 588888999999999999999999987544
No 44
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.59 E-value=0.17 Score=36.80 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhh
Q 046053 24 AMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQDMYSLCENIINDVL 103 (199)
Q Consensus 24 P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (199)
=+.+|+++|+++||+|++++........+. ...++++..++.. .. ........ ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--------~~~~~~~~~~~~~-----~~---~~~~~~~~-~~-------- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE--------EEDGVRVHRLPLP-----RR---PWPLRLLR-FL-------- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE--------EETTEEEEEE--S------S---SSGGGHCC-HH--------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc--------ccCCceEEeccCC-----cc---chhhhhHH-HH--------
Confidence 367899999999999999997654432111 1136787777632 11 00000100 11
Q ss_pred hHHHHHHHHHhhccCCCCCCCceEEEecCCch-hHHHHHH-HhCCCcEEEecc
Q 046053 104 LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMA-FTITAAQ-RLGLPSALFFTI 154 (199)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~-~~~~vA~-~lgIP~v~~~~~ 154 (199)
..+.+++ .... .++|+|.+-.... +...+++ ..++|.+.-.-.
T Consensus 61 -~~~~~~l-~~~~------~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 61 -RRLRRLL-AARR------ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp -HHHHHHC-HHCT---------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred -HHHHHHH-hhhc------cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 1123333 1122 5899888776332 3445555 889999886654
No 45
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.11 E-value=0.57 Score=40.48 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=46.8
Q ss_pred cceEEEEcC--CCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCC
Q 046053 8 KVHAVCIPS--PFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDG 74 (199)
Q Consensus 8 ~~hvv~vp~--p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~ 74 (199)
.++|+|+.- -|.||+-=++.+|+.|... |++|++++.......+ ....+++++.+|..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F---------~~~~gVd~V~LPsl 70 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF---------PGPAGVDFVKLPSL 70 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC---------CCcccCceEecCce
Confidence 458999885 7789999999999999998 9999999987655433 12248999999864
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.87 E-value=1.1 Score=37.11 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.|+-.-+..+++.|+++||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 489999999999999999999999876544
No 47
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.47 E-value=4.5 Score=38.76 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=66.4
Q ss_pred cceEEEEcCCC-------------cccHHHHHHHHHH--------hhhcCc----EEEEEeCCchhhhhhhh-cCCCCCC
Q 046053 8 KVHAVCIPSPF-------------QSHIKAMLQSAKL--------LHHKGF----HITCVNTEFNHRCFLKS-RGHHSLD 61 (199)
Q Consensus 8 ~~hvv~vp~p~-------------~GH~~P~l~La~~--------La~~G~----~VT~~t~~~~~~~~~~~-~~~~~~~ 61 (199)
..+|+++..-+ -|+..=.++||++ |+++|| +|+++|--.....-... ...+...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 46777766544 3555567777776 578999 77798864322110000 0001112
Q ss_pred CCCCeeEEEeCCCCCCCCCCCCCCC--chhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCch-h-H
Q 046053 62 GLPNFRFEAIPDGRDGLPASSYESS--TTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMA-F-T 137 (199)
Q Consensus 62 ~~~~i~f~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~-~-~ 137 (199)
+.++++.+-+|. +...+..... ...++..++..+ .+.+ .+.+.++. + .+||+|+.-+-.+ + +
T Consensus 335 ~~~~~~I~rvp~---g~~~~~~~~~~i~k~~l~p~l~~f-~~~~---~~~~~~~~-----~--~~pDlIHahy~d~glva 400 (784)
T TIGR02470 335 GTEHAWILRVPF---RTENGIILRNWISRFEIWPYLETF-AEDA---EKEILAEL-----Q--GKPDLIIGNYSDGNLVA 400 (784)
T ss_pred CCCceEEEEecC---CCCcccccccccCHHHHHHHHHHH-HHHH---HHHHHHhc-----C--CCCCEEEECCCchHHHH
Confidence 335777777774 2211100000 122343444433 2211 11222221 1 4799999976443 3 5
Q ss_pred HHHHHHhCCCcEE
Q 046053 138 ITAAQRLGLPSAL 150 (199)
Q Consensus 138 ~~vA~~lgIP~v~ 150 (199)
..+|+++|||.+.
T Consensus 401 ~lla~~lgVP~v~ 413 (784)
T TIGR02470 401 SLLARKLGVTQCT 413 (784)
T ss_pred HHHHHhcCCCEEE
Confidence 8889999999664
No 48
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=91.33 E-value=7.1 Score=33.14 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=26.0
Q ss_pred eEEEEc-CCCcc-cHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 10 HAVCIP-SPFQS-HIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp-~p~~G-H~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+|+++. .-..| =-.-+..||++|+++||+|+++|+..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 455553 22233 33456999999999999999999753
No 49
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=91.32 E-value=3.9 Score=35.18 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCchh-hhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhhHHHHHHHH
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEFNH-RCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQDMYSLCENI 98 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~~~-~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (199)
-|+.=+-++.++|-++||+|.+.+-+... ..+... -++.+..+... + .+ . ...+....
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~---------yg~~y~~iG~~--g--~~------~--~~Kl~~~~ 69 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL---------YGIDYIVIGKH--G--DS------L--YGKLLESI 69 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH---------cCCCeEEEcCC--C--CC------H--HHHHHHHH
Confidence 48888999999999999999998776533 122221 36788877641 1 11 1 11222211
Q ss_pred HHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHHHhHH
Q 046053 99 INDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQ 166 (199)
Q Consensus 99 ~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~~~ 166 (199)
.+ ..++++.+.+ .+||++|+= ....+.-+|.-+|+|.+.|.-..-+.....+.+|
T Consensus 70 --~R----~~~l~~~~~~------~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P 124 (335)
T PF04007_consen 70 --ER----QYKLLKLIKK------FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP 124 (335)
T ss_pred --HH----HHHHHHHHHh------hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh
Confidence 22 1223333322 479999963 3455677999999999999987655544433333
No 50
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=90.83 E-value=3.2 Score=35.63 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
.-|.-.=..+||++|+++||+|+++++...
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~ 48 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATR 48 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccC
Confidence 346668899999999999999999997643
No 51
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=90.39 E-value=5.7 Score=39.22 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=73.7
Q ss_pred CCcceEEEEcCCCc---------------ccHHHHHHHHHHhhhcC--cEEEEEeCCchhhhh--------hhhcC----
Q 046053 6 HYKVHAVCIPSPFQ---------------SHIKAMLQSAKLLHHKG--FHITCVNTEFNHRCF--------LKSRG---- 56 (199)
Q Consensus 6 ~~~~hvv~vp~p~~---------------GH~~P~l~La~~La~~G--~~VT~~t~~~~~~~~--------~~~~~---- 56 (199)
.+++.|+++..-|- |+..=..+||++|+++| |+|.++|-....+.. +....
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 44677887765332 35556799999999998 899999964432111 00000
Q ss_pred -C-CCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhHHHHH----HHHHhhccCCCCCCCceEEEe
Q 046053 57 -H-HSLDGLPNFRFEAIPDGRDGLPASSYESSTTQDMYSLCENIINDVLLQPFLD----LLAKLSDSSNNVNPAVSCIIS 130 (199)
Q Consensus 57 -~-~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ll~~l~~~~~~~~~~~d~vI~ 130 (199)
. ......++++.+-+|. +....+- ....+...+..+ .+.+...+.+ +.+++... .+ ..||+|-.
T Consensus 247 ~~~~~~~~~~g~rIvRip~---GP~~~~l---~Ke~L~~~l~ef-~d~~l~~~~~~~~~~~~~~~~~-~~--~~pDvIHa 316 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPF---GPRDKYI---PKEELWPYIPEF-VDGALSHIVNMSKVLGEQIGSG-HP--VWPYVIHG 316 (1050)
T ss_pred cccccccCCCCeEEEEecc---CCCCCCc---CHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhccc-cC--CCCCEEEE
Confidence 0 0001125788887775 3221110 112334444444 3333332222 22332110 01 24899988
Q ss_pred cCCch-h-HHHHHHHhCCCcEEEec
Q 046053 131 DDFMA-F-TITAAQRLGLPSALFFT 153 (199)
Q Consensus 131 D~~~~-~-~~~vA~~lgIP~v~~~~ 153 (199)
-+... + +..+++.+|||.|.-.-
T Consensus 317 Hyw~sG~aa~~L~~~lgVP~V~T~H 341 (1050)
T TIGR02468 317 HYADAGDSAALLSGALNVPMVLTGH 341 (1050)
T ss_pred CcchHHHHHHHHHHhhCCCEEEECc
Confidence 76333 3 57888999999776444
No 52
>PLN00142 sucrose synthase
Probab=89.87 E-value=4 Score=39.24 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=24.4
Q ss_pred CCceEEEecCCch-h-HHHHHHHhCCCcEEEec
Q 046053 123 PAVSCIISDDFMA-F-TITAAQRLGLPSALFFT 153 (199)
Q Consensus 123 ~~~d~vI~D~~~~-~-~~~vA~~lgIP~v~~~~ 153 (199)
.+||+|+.-+-.+ + +..+|+++|||.+.-.-
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 4799999987554 4 58899999999996443
No 53
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=89.78 E-value=5.1 Score=35.27 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcCc--EEEEEeCC
Q 046053 23 KAMLQSAKLLHHKGF--HITCVNTE 45 (199)
Q Consensus 23 ~P~l~La~~La~~G~--~VT~~t~~ 45 (199)
.=+.+|+++|+++|| +|+++|..
T Consensus 30 ~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 30 KYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred hHHHHHHHHHHhCCCCcEEEEEecc
Confidence 457899999999997 99999964
No 54
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=88.98 E-value=8.2 Score=29.90 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=54.3
Q ss_pred hcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhHHHHHHHHH
Q 046053 34 HKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQDMYSLCENIINDVLLQPFLDLLAK 113 (199)
Q Consensus 34 ~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 113 (199)
++||+|++++...... . . ++++.+.+.... +..++. .....+++.-+ .+. ..+.+.+.+
T Consensus 1 q~gh~v~fl~~~~~~~-~---------~--~GV~~~~y~~~~-~~~~~~--~~~~~~~e~~~-----~rg-~av~~a~~~ 59 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPP-I---------P--PGVRVVRYRPPR-GPTPGT--HPYVRDFEAAV-----LRG-QAVARAARQ 59 (171)
T ss_pred CCCCEEEEEecCCCCC-C---------C--CCcEEEEeCCCC-CCCCCC--CcccccHHHHH-----HHH-HHHHHHHHH
Confidence 4799999999544332 1 1 367777665421 111110 11122222111 111 234444456
Q ss_pred hhccCCCCCCCceEEEecCCchhHHHHHHHh-CCCcEEEec
Q 046053 114 LSDSSNNVNPAVSCIISDDFMAFTITAAQRL-GLPSALFFT 153 (199)
Q Consensus 114 l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-gIP~v~~~~ 153 (199)
|+++ | -.||+||.-.-.+.+.-+-+.+ ++|.+.|.=
T Consensus 60 L~~~--G--f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 60 LRAQ--G--FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHc--C--CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 6553 4 6899999998777778888999 899988653
No 55
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.31 E-value=0.77 Score=37.94 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=27.0
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
-|+.+.+..|+++|+++||+|+++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFR 43 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 589999999999999999999999987543
No 56
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=88.23 E-value=0.79 Score=39.33 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=31.5
Q ss_pred CcceEEEEcCCCc-ccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 7 YKVHAVCIPSPFQ-SHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 7 ~~~hvv~vp~p~~-GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.+++|++++...- ||..+...|+++|.++|+++.+++..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 4567888877554 99999999999999999987666543
No 57
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=87.55 E-value=1.4 Score=39.21 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=32.0
Q ss_pred CCcceEEEEcCCC-----cccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 6 HYKVHAVCIPSPF-----QSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~p~-----~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
++++||+++.-|. -|=-+=+.+|++.|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5789999884322 2334667999999999999999999864
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=87.49 E-value=0.86 Score=37.20 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=32.9
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
+|+++.....|+..-+.+|++.|.++||+|++++.....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 366666667889999999999999999999999987654
No 59
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.37 E-value=0.67 Score=39.01 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=30.2
Q ss_pred eEEEEcCCCc-ccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 10 HAVCIPSPFQ-SHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~p~~-GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+|+++.+|.. |.-.-..+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5666666444 777889999999999999999998764
No 60
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=87.09 E-value=1.4 Score=31.40 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=35.6
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
+|++.+.++..|...+.-++..|.++|++|.++......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588999999999999999999999999999888765444333
No 61
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=87.04 E-value=13 Score=30.85 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
-|--.-..+|+++|+++||+|++++....
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~ 38 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGR 38 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCc
Confidence 35557789999999999999999987543
No 62
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=86.79 E-value=2.2 Score=30.78 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=58.5
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQD 90 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~ 90 (199)
|+++.-....| .+++++.|.++|++|++++.....+.... ..++.+..++. .. . .
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~---~~----k--~---- 56 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPS---PR----K--S---- 56 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecC---CC----C--c----
Confidence 55666555556 56889999999999999999544322111 14677777653 11 0 0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCch-h--HHHHHHHhC-CCcEEEec
Q 046053 91 MYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMA-F--TITAAQRLG-LPSALFFT 153 (199)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~-~--~~~vA~~lg-IP~v~~~~ 153 (199)
....+. + . .+..++++ .+||.|.+-...+ + +..+++..| +|.+....
T Consensus 57 ~~~~~~-~-----~-~l~k~ik~---------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 57 PLNYIK-Y-----F-RLRKIIKK---------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred cHHHHH-H-----H-HHHHHhcc---------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 111111 1 1 23444443 4799997766554 2 233456667 88875444
No 63
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=86.38 E-value=0.82 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
|=-.-+.+|+++|+++||+||+++.....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 56678999999999999999999776543
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=86.22 E-value=2.4 Score=31.50 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=40.3
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
++++|++.+.++.+|-.-..-++..|.++|++|+++...-..+.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~ 47 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFI 47 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 4688999999999999999999999999999999998876655553
No 65
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=84.76 E-value=7.3 Score=36.21 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=54.6
Q ss_pred CcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCC---CCCCCCCCCCCc--hhhHHHHHHHHHHhhhhHHHHHH
Q 046053 36 GFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGR---DGLPASSYESST--TQDMYSLCENIINDVLLQPFLDL 110 (199)
Q Consensus 36 G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 110 (199)
+++|-+++.|...+...+..-.+-....|+++|..+..+. .|+..-.+ .+. .-++...+... ......++++
T Consensus 226 ~~kIfI~AGE~SGDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d-~~eLsVmG~~EVL~~l--~~l~~~~~~l 302 (608)
T PRK01021 226 NTSCFISAGEHSGDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFN-MEEFQVSGFWEVLLAL--FKLWYRYRKL 302 (608)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCC-hHHhhhhhHHHHHHHH--HHHHHHHHHH
Confidence 5677777776543321111000001224689999888641 23322101 000 01122233323 2334455666
Q ss_pred HHHhhccCCCCCCCceEEEe-cC--CchhHHHHHHHhCC--CcEEEecc
Q 046053 111 LAKLSDSSNNVNPAVSCIIS-DD--FMAFTITAAQRLGL--PSALFFTI 154 (199)
Q Consensus 111 l~~l~~~~~~~~~~~d~vI~-D~--~~~~~~~vA~~lgI--P~v~~~~~ 154 (199)
.+.+.+ .+||++|. |. |.......+++.|+ |.+.|.+-
T Consensus 303 ~~~i~~------~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsP 345 (608)
T PRK01021 303 YKTILK------TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCP 345 (608)
T ss_pred HHHHHh------cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc
Confidence 666654 47897665 86 34445667788896 87665543
No 66
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.27 E-value=2.3 Score=35.72 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=33.8
Q ss_pred ceEEEEcC----CCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 9 VHAVCIPS----PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~----p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+||++++= -|.||+.=++.||+.|..+|+.++|++......
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 35666543 567999999999999999999999999987544
No 67
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=82.07 E-value=2.3 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 17 PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 17 p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
...|+..-...+++.|+++||+|+++++....
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYPG 43 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 45689999999999999999999999876543
No 68
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=81.90 E-value=21 Score=27.30 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=30.0
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEE
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCV 42 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~ 42 (199)
-|.+++.++.|=....+.+|-+.+.+|++|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367789999999999999999999999999993
No 69
>PRK05595 replicative DNA helicase; Provisional
Probab=81.48 E-value=9.6 Score=33.90 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=34.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHhh-hcCcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLH-HKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La-~~G~~VT~~t~~~~~~~~ 51 (199)
+++-.-|+.|=..=++++|..++ ++|..|.|++.+.....+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45667799999999999999887 569999999998776554
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=80.14 E-value=2.7 Score=34.51 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.-|+..-...|++.|+++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 4589999999999999999999999986544
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=78.98 E-value=4.3 Score=33.37 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=28.7
Q ss_pred ceEEEEcCC-------Cc-ccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 9 VHAVCIPSP-------FQ-SHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 9 ~hvv~vp~p-------~~-GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
++|++++.. .. |--.-...|++.|.++||+|++++...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 356666532 33 445778999999999999999999754
No 72
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=78.80 E-value=3.4 Score=34.35 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=31.8
Q ss_pred ceEEEEcCC-C-cccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 9 VHAVCIPSP-F-QSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 9 ~hvv~vp~p-~-~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
++|+++... . -|+-.-...+++.|.++||+|++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 356776654 3 58889999999999999999999997654
No 73
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.96 E-value=5.9 Score=31.24 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=39.1
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
...+|++.+.++..|-....-++..|.++|++|+++...-..+.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~ 126 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFV 126 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 3679999999999999999999999999999999987655544443
No 74
>PRK06321 replicative DNA helicase; Provisional
Probab=77.87 E-value=26 Score=31.64 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=34.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhh-cCcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHH-KGFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~-~G~~VT~~t~~~~~~~~ 51 (199)
+++-.-|+.|=..=++++|+..+. .|..|-|++.+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 456677999999999999999985 59999999998776554
No 75
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=77.73 E-value=6.4 Score=31.01 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=40.9
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
.+.+|++.+.++..|-....-++..|.++|++|+++...-..+.+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 45799999999999999999999999999999999988766655543
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=77.60 E-value=3 Score=34.61 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
.-|+...+..|++.|.++||+|++++...
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 36889999999999999999999998643
No 77
>PRK08760 replicative DNA helicase; Provisional
Probab=77.08 E-value=18 Score=32.58 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=34.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhc-CcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHK-GFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~-G~~VT~~t~~~~~~~~ 51 (199)
+++..-|+.|=..=++++|...+.+ |..|-|++.+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 5667779999999999999998854 9999999988766544
No 78
>PRK00654 glgA glycogen synthase; Provisional
Probab=76.44 E-value=4.5 Score=35.99 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
|.-.-.-.|+++|+++||+|+++++.
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 45566789999999999999999964
No 79
>PRK11519 tyrosine kinase; Provisional
Probab=75.81 E-value=74 Score=30.24 Aligned_cols=41 Identities=5% Similarity=0.116 Sum_probs=33.8
Q ss_pred CcceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 7 YKVHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 7 ~~~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
...++++++. |+.|=..-...||..|+..|.+|-++-....
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3456777766 7889999999999999999999999977544
No 80
>PLN02846 digalactosyldiacylglycerol synthase
Probab=75.27 E-value=4.5 Score=36.39 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=31.6
Q ss_pred CCcceEEEEcCCCc----ccHHHHHHHHHHhhhcC-cEEEEEeCCc
Q 046053 6 HYKVHAVCIPSPFQ----SHIKAMLQSAKLLHHKG-FHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~p~~----GH~~P~l~La~~La~~G-~~VT~~t~~~ 46 (199)
.+++||++++-... |=..-.+.++..|+++| |+|+++.+..
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 35689999987544 55356677777999999 8999998854
No 81
>PRK09165 replicative DNA helicase; Provisional
Probab=74.19 E-value=23 Score=32.16 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=34.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhc---------------CcEEEEEeCCchhhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHK---------------GFHITCVNTEFNHRCFL 52 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~---------------G~~VT~~t~~~~~~~~~ 52 (199)
+++..-|+.|=..=++++|...+.+ |..|.|++.+.....+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 5667779999999999999888754 78999999988776553
No 82
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.61 E-value=5.4 Score=30.34 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=24.7
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEe
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t 43 (199)
.-|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 83
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=72.72 E-value=6.1 Score=31.92 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 17 PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 17 p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
+.-|+-.-+..|++.|.++||+|++++.....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 10 GGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred cCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 36788899999999999999999999986544
No 84
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.64 E-value=9.2 Score=27.52 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=36.6
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
||++.+.++..|-.-..-++..|...|++|.+.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 689999999999999999999999999999999886554443
No 85
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.46 E-value=55 Score=31.16 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=33.0
Q ss_pred CcceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 7 YKVHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 7 ~~~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
...+++.|+. ++.|-..-...||..|+..|.+|-++=....
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3456666655 7789999999999999999999998876644
No 86
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=72.28 E-value=64 Score=28.00 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=23.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcE
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFH 38 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~ 38 (199)
++-+=....|.++-...|+++|.+++.+
T Consensus 52 ~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~ 79 (425)
T PRK05749 52 LIWFHAVSVGETRAAIPLIRALRKRYPD 79 (425)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 4556677889999999999999998644
No 87
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=72.22 E-value=6.7 Score=32.43 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.-|.-.-+.+|++.|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4588888999999999999999999987544
No 88
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=72.19 E-value=11 Score=30.21 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=40.3
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
...+|++.+.++..|-....=++..|.++|++|+++...-..+.+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v 132 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKIL 132 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 4689999999999999999999999999999999998866555553
No 89
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=70.29 E-value=8.5 Score=31.14 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
-|+..-+..|++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 688999999999999999999999987554
No 90
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=69.39 E-value=7.6 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=30.7
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
||++.-..+.+=.. ..++.++|.++|++|+++.++.-.+-+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 55555555544444 999999999999999999998766544
No 91
>PRK07773 replicative DNA helicase; Validated
Probab=68.92 E-value=37 Score=33.12 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=35.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhc-CcEEEEEeCCchhhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHK-GFHITCVNTEFNHRCFL 52 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~-G~~VT~~t~~~~~~~~~ 52 (199)
+++.--|+.|=..=.+++|...+.+ |..|.|++.+.....+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 5667779999999999999999865 89999999988766553
No 92
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=68.77 E-value=11 Score=30.42 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.-|...-++.|+++|+++||+|++++.....
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3466677889999999999999999986543
No 93
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=68.40 E-value=11 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=33.8
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
++++...+..-|-.-+.-++..|.++||+|.++-....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 78999999999999999999999999999999966543
No 94
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=67.69 E-value=9.8 Score=33.79 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=28.0
Q ss_pred ceEEEEcC---C---CcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 9 VHAVCIPS---P---FQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 9 ~hvv~vp~---p---~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+||+++++ | .-|--.-.-.|+++|+++||+|+++++.-
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 35666653 3 23445667899999999999999999743
No 95
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=67.61 E-value=60 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.0
Q ss_pred CceEEEecCCchhHHHHHHHh-CCCcEEEecch
Q 046053 124 AVSCIISDDFMAFTITAAQRL-GLPSALFFTIS 155 (199)
Q Consensus 124 ~~d~vI~D~~~~~~~~vA~~l-gIP~v~~~~~~ 155 (199)
+||++|.+.-.+++..+++.+ ++|.+.+.-.+
T Consensus 107 ~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 107 VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred CCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 689888887677777777764 78888876643
No 96
>PRK05636 replicative DNA helicase; Provisional
Probab=67.58 E-value=36 Score=31.00 Aligned_cols=41 Identities=7% Similarity=-0.026 Sum_probs=33.5
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhh-cCcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHH-KGFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~-~G~~VT~~t~~~~~~~~ 51 (199)
+++.--|+.|=..=++++|...+. +|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 566777999999999999998874 58999999988766544
No 97
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.27 E-value=52 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
+.|--.=..+++.-+...|++||+++|+...+...+
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~ 73 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIK 73 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHH
Confidence 456677788999999999999999999987665433
No 98
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=66.88 E-value=9.4 Score=31.69 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCC
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPD 73 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 73 (199)
|=-.=..+|+++|.++||+|++++......... ....++++..++.
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~--------~~~~~i~~~~~~~ 61 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKE--------TEYNGVRLIHIPA 61 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc--------cccCCceEEEcCC
Confidence 334667899999999999999999865432110 1124677776653
No 99
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=66.21 E-value=31 Score=28.33 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--HHHHHHHhCCCcEEEecchhHHHHHHH
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TITAAQRLGLPSALFFTISACSFKGLK 163 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~~a~~~~~~~ 163 (199)
..+.++.+.+++ .++.||+++....- +..+|++.|++.+.+-+.+..++..|.
T Consensus 204 ~~l~~l~~~ik~------~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m~ 258 (266)
T cd01018 204 ADLKRLIDLAKE------KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENLL 258 (266)
T ss_pred HHHHHHHHHHHH------cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHHH
Confidence 456677666665 47899999986664 688999999999988877655444443
No 100
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=66.18 E-value=64 Score=25.48 Aligned_cols=38 Identities=13% Similarity=-0.055 Sum_probs=34.1
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
..--|.++.-++.|=....+.+|-+.+.+|.+|.++=-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 35678899999999999999999999999999998754
No 101
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.72 E-value=6.8 Score=34.74 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
|++--=|+.|--.=+|+++..|+++| +|-|++.+....++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 45555699999999999999999999 99999998876544
No 102
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.63 E-value=1.3e+02 Score=28.60 Aligned_cols=41 Identities=7% Similarity=0.123 Sum_probs=32.7
Q ss_pred CcceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 7 YKVHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 7 ~~~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
...++++|+. |+.|=..-...||..|+..|.+|-++=....
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3556777766 5668888899999999999999998876543
No 103
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=64.41 E-value=89 Score=26.53 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=39.7
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhh
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCF 51 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~ 51 (199)
.+..+|+++-.-+.|-+.=+..+.+.|.++ +.+|++++.+.+.+-+
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 345789999999999999999999999988 8999999998777533
No 104
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=63.69 E-value=12 Score=27.24 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 23 KAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
...+.|+++.++|||+|.++......
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 46789999999999999999876543
No 105
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=63.31 E-value=69 Score=24.85 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=30.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEE
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCV 42 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~ 42 (199)
+.-|.++.-++.|=..-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34577888899999999999999999999999765
No 106
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=63.10 E-value=14 Score=30.34 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=40.5
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKS 54 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~ 54 (199)
..-++++--||.|=..=...++.+|..+|++|+|++++.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34688888899888888999999999889999999999888777654
No 107
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=62.10 E-value=58 Score=25.02 Aligned_cols=31 Identities=26% Similarity=0.129 Sum_probs=21.2
Q ss_pred cCCCcccHHHHHHHHHHh-hhcCcEEEEEeCC
Q 046053 15 PSPFQSHIKAMLQSAKLL-HHKGFHITCVNTE 45 (199)
Q Consensus 15 p~p~~GH~~P~l~La~~L-a~~G~~VT~~t~~ 45 (199)
-..+-||+.=|+.|.+.+ -++....+++.+.
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~ 35 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTE 35 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEc
Confidence 345679999999999999 4444444444443
No 108
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=61.95 E-value=13 Score=32.07 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
|--.=+.+|++.|+++||+|+++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccC
Confidence 445678999999999999999999753
No 109
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=61.51 E-value=36 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhh
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRC 50 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~ 50 (199)
+-.|++.|. .+.+||++.+..++..
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 455677777 9999999999877653
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=61.16 E-value=7.1 Score=34.48 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
|=-.-.-.|+++|+++||+|+++++.
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 44455678999999999999999964
No 111
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=60.44 E-value=42 Score=28.96 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=21.0
Q ss_pred CCceEEE-ecC--CchhHHHHHHHh--CCCcEEEecch
Q 046053 123 PAVSCII-SDD--FMAFTITAAQRL--GLPSALFFTIS 155 (199)
Q Consensus 123 ~~~d~vI-~D~--~~~~~~~vA~~l--gIP~v~~~~~~ 155 (199)
.+|||+| .|+ |.....--+++. |||++.|.+-.
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 3688665 475 444455566777 79988766543
No 112
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.36 E-value=24 Score=27.04 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhH
Q 046053 104 LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISAC 157 (199)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~ 157 (199)
...++..+.++.. .++++||-+. .+...|+++|+|++.+.++--+
T Consensus 111 ~~e~~~~i~~~~~------~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 111 EEEIEAAIKQAKA------EGVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHHH------TT--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHHH------cCCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 4567777777765 3699999986 3578999999999988875433
No 113
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=60.02 E-value=1.1e+02 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhh--cCcEEE---EEeCCchh
Q 046053 23 KAMLQSAKLLHH--KGFHIT---CVNTEFNH 48 (199)
Q Consensus 23 ~P~l~La~~La~--~G~~VT---~~t~~~~~ 48 (199)
.=.+.++++|.+ .|++|. ++.+..-.
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~ 41 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAY 41 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHH
Confidence 456788999988 599999 88877543
No 114
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=59.25 E-value=11 Score=30.42 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
-|+.-|-+.|.+|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367899999999999999999999884
No 115
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=59.12 E-value=7.7 Score=31.54 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
|--.-.-.|+++|+++||+|+++++.-
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 445667889999999999999999864
No 116
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.60 E-value=17 Score=27.35 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
..+++|++.+...-||-.=.--+++.|++.|++|.+........
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~ 53 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPE 53 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHH
Confidence 36899999999999999999999999999999999876654443
No 117
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=58.35 E-value=69 Score=26.80 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=19.9
Q ss_pred CceEEEec--CCchh-HHHHHHHhCCCcEEEe
Q 046053 124 AVSCIISD--DFMAF-TITAAQRLGLPSALFF 152 (199)
Q Consensus 124 ~~d~vI~D--~~~~~-~~~vA~~lgIP~v~~~ 152 (199)
+||+|++= ....+ +..+|+.+|||++...
T Consensus 88 ~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 88 KPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 68977764 33333 4667788899988753
No 118
>PLN02316 synthase/transferase
Probab=58.01 E-value=24 Score=35.06 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=31.5
Q ss_pred CCcceEEEEcC---C--CcccH-HHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 6 HYKVHAVCIPS---P--FQSHI-KAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~---p--~~GH~-~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
...+||+++.. | -.|-+ .-.-.|+++|+++||+|.++++.-
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 35689998864 3 23555 446899999999999999999854
No 119
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.51 E-value=50 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.+.++|.+--.|+.|-..-.+.++..|..+|++|-=+.++.-.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 4578899999999999999999999999999999877666544
No 120
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=56.77 E-value=68 Score=25.25 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
+..||+.|.+.|+++ +.|....+.++.
T Consensus 13 l~~lAk~L~~lGf~I--~AT~GTAk~L~e 39 (187)
T cd01421 13 LVEFAKELVELGVEI--LSTGGTAKFLKE 39 (187)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 678999999999988 466667766654
No 121
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=56.02 E-value=13 Score=29.14 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCcEEEEEeCCc
Q 046053 26 LQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~ 46 (199)
..||+++..+|++||+++.+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 568999999999999999884
No 122
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=55.81 E-value=1.5 Score=24.65 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=18.0
Q ss_pred EEcCCCcccHHHHHHHHHHhhhcCc
Q 046053 13 CIPSPFQSHIKAMLQSAKLLHHKGF 37 (199)
Q Consensus 13 ~vp~p~~GH~~P~l~La~~La~~G~ 37 (199)
|-+||+||-+||-+++-.-|-..||
T Consensus 15 FPTFPGqGP~NPKir~Pyplpn~g~ 39 (39)
T PF08026_consen 15 FPTFPGQGPFNPKIRWPYPLPNPGH 39 (39)
T ss_pred CCcCCCCCCCCccccccccCCCCCC
Confidence 4578999999998877655555543
No 123
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=55.80 E-value=19 Score=29.19 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=27.9
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
..|+-.-+..+++.|++.||+|++++......
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~ 44 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGP 44 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCC
Confidence 47888999999999999999999999876543
No 124
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.06 E-value=14 Score=32.66 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
||+.|++.| ++|...||+|+++....+
T Consensus 49 Ghlv~l~kL-~~fQ~aGh~~ivLigd~t 75 (401)
T COG0162 49 GHLVPLMKL-RRFQDAGHKPIVLIGDAT 75 (401)
T ss_pred hhHHHHHHH-HHHHHCCCeEEEEecccc
Confidence 999999887 678999999999986543
No 125
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=54.73 E-value=33 Score=27.28 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.4
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEEecchh
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALFFTISA 156 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a 156 (199)
..+.+||+|---..+..-|++.|||.+++..-.-
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~ 61 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLDRKEF 61 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccC
Confidence 3689999998777789999999999998766543
No 126
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=54.02 E-value=20 Score=29.72 Aligned_cols=32 Identities=6% Similarity=-0.034 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 17 PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 17 p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
..-|.-.-+..+++.|+++||+|++++.....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 45688889999999999999999999986543
No 127
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=53.20 E-value=22 Score=27.93 Aligned_cols=42 Identities=19% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCC
Q 046053 24 AMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPD 73 (199)
Q Consensus 24 P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 73 (199)
=.-+|+.+|+++|++|||++.......-. ....+++.+.++.
T Consensus 22 ~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~--------~~y~gv~l~~i~~ 63 (185)
T PF09314_consen 22 FVEELAPRLVSKGIDVTVYCRSDYYPYKE--------FEYNGVRLVYIPA 63 (185)
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCC--------cccCCeEEEEeCC
Confidence 34578899999999999998865543211 1124788887764
No 128
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=52.51 E-value=1.4e+02 Score=25.17 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=37.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCF 51 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~ 51 (199)
++|+++-..+.|-+.=.+.+.+.|.++ +.+|++++.+....-+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~ 45 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL 45 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH
Confidence 369999999999999999999999987 8999999987766533
No 129
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=52.39 E-value=29 Score=28.53 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 21 HIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 21 H~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
--.-+.++++.|.++||+|++++....
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 335588999999999999999987543
No 130
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=52.24 E-value=77 Score=22.00 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 046053 21 HIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQDMYSLCENIIN 100 (199)
Q Consensus 21 H~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (199)
+-.=++.+++.|.+.|+++ +.|+...+.+... ++....+.. .+.+ .
T Consensus 11 ~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~----------gi~~~~v~~----~~~~-~----------------- 56 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKL--VATEGTAKYLQEA----------GIPVEVVNK----VSEG-R----------------- 56 (110)
T ss_pred cHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHc----------CCeEEEEee----cCCC-c-----------------
Confidence 4455789999999999988 4666666655432 455444332 1111 0
Q ss_pred hhhhHHHHHHHHHhhccCCCCCCCceEEEecC-------CchhHHHHHHHhCCCcE
Q 046053 101 DVLLQPFLDLLAKLSDSSNNVNPAVSCIISDD-------FMAFTITAAQRLGLPSA 149 (199)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~-------~~~~~~~vA~~lgIP~v 149 (199)
+.+.+.+++ .++|+||.-. -..+..-.|-++|||.+
T Consensus 57 ----~~i~~~i~~---------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 57 ----PNIVDLIKN---------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred ----hhHHHHHHc---------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 012233332 4789998843 13467888999999998
No 131
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=52.22 E-value=70 Score=29.20 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCC
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPA 80 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 80 (199)
+..|++.|.+.|+++ +.|....+.++.. +|....+.+.. ++|+
T Consensus 13 iv~lAk~L~~lGfeI--iATgGTak~L~e~----------GI~v~~Vsk~T-gfPE 55 (511)
T TIGR00355 13 IVEFAQGLVERGVEL--LSTGGTAKLLAEA----------GVPVTEVSDYT-GFPE 55 (511)
T ss_pred HHHHHHHHHHCCCEE--EEechHHHHHHHC----------CCeEEEeeccc-CCch
Confidence 678999999999988 4677777766542 56655554422 4443
No 132
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=52.00 E-value=1.3 Score=39.66 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=16.8
Q ss_pred CceEEEecCCchhHHHHHHHhCCCcEEEe
Q 046053 124 AVSCIISDDFMAFTITAAQRLGLPSALFF 152 (199)
Q Consensus 124 ~~d~vI~D~~~~~~~~vA~~lgIP~v~~~ 152 (199)
++|++|+|.+..++..+|+.+|+|.+.+.
T Consensus 119 ~fDlvI~d~f~~c~~~la~~l~iP~i~~~ 147 (500)
T PF00201_consen 119 KFDLVISDAFDPCGLALAHYLGIPVIIIS 147 (500)
T ss_dssp HHCT-EEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccccceEeeccchhHHHHHHhcCCeEEEe
Confidence 46666666655555566666666665443
No 133
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=51.55 E-value=32 Score=27.82 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--H-HHHHHHhCCCcEEEecchhHH
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--T-ITAAQRLGLPSALFFTISACS 158 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~-~~vA~~lgIP~v~~~~~~a~~ 158 (199)
+.+.+..+++.+ ...|+||.|++.+- - ..+++..|+|++...+.-|..
T Consensus 165 ~~l~~Aa~~L~~------~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~ 215 (221)
T PF07302_consen 165 EELAAAARELAE------QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARL 215 (221)
T ss_pred HHHHHHHHHHHh------cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHH
Confidence 445555566654 47899999986654 2 667788999999766654443
No 134
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=51.22 E-value=34 Score=28.75 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=26.5
Q ss_pred CCceEEEecCCch-----hHHHHHHHhCCCcEEEecch
Q 046053 123 PAVSCIISDDFMA-----FTITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 123 ~~~d~vI~D~~~~-----~~~~vA~~lgIP~v~~~~~~ 155 (199)
.++-+||-|.|.- ...++|.+.+||+|++.-..
T Consensus 147 ~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 147 QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 5899999998754 35778889999999987654
No 135
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=50.66 E-value=23 Score=28.07 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=28.7
Q ss_pred eEEEEcCCCcccHHH-HHHHHHHhhhcCcEEEEEeCCchh
Q 046053 10 HAVCIPSPFQSHIKA-MLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 10 hvv~vp~p~~GH~~P-~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
+|+ +-..|-....- ...|+++|.++|++|+++.|+.-.
T Consensus 7 ~Il-lgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RIG-FGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EEE-EEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 444 44445555555 699999999999999999998654
No 136
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=50.58 E-value=1.2e+02 Score=23.54 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=29.0
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
+--|-+++-.+.|=....+.+|-+-+.+|.+|.++=--+.
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg 42 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKG 42 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence 3457789999999999999999999999999999865443
No 137
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=50.15 E-value=40 Score=27.81 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=25.1
Q ss_pred Cce-EEEecCCch-hHHHHHHHhCCCcEEEecchh
Q 046053 124 AVS-CIISDDFMA-FTITAAQRLGLPSALFFTISA 156 (199)
Q Consensus 124 ~~d-~vI~D~~~~-~~~~vA~~lgIP~v~~~~~~a 156 (199)
-|| ++|+|.-.- -+..-|+++|||++.+.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 477 567787544 478889999999999887653
No 138
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=49.64 E-value=33 Score=27.79 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=28.8
Q ss_pred EEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 13 CIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 13 ~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
+..+..-|+-..+..|+++|.+.|++|.+++....
T Consensus 6 ~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 6 ITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred EeeccCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 33445578999999999999999999999987543
No 139
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=49.50 E-value=1.3e+02 Score=23.93 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=30.8
Q ss_pred eEEEEcCCCc-ccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 10 HAVCIPSPFQ-SHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 10 hvv~vp~p~~-GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.+-++..|.. |-..-+|+-++...-+|-+|.++++.-..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 3445555544 88899999999999999999999887544
No 140
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=49.46 E-value=57 Score=21.51 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=29.3
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEE
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCV 42 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~ 42 (199)
...++++.-....|..=.-++|+.|+++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35567777777899999999999999999988755
No 141
>PLN02275 transferase, transferring glycosyl groups
Probab=48.68 E-value=1.7e+02 Score=24.92 Aligned_cols=37 Identities=14% Similarity=-0.059 Sum_probs=29.5
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCc-EEEEEeCCc
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGF-HITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~~t~~~ 46 (199)
++.++..+-.|.---|..+++.|+++|+ +||+++...
T Consensus 6 ~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~ 43 (371)
T PLN02275 6 RAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGG 43 (371)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecC
Confidence 4455555888888889999999999975 799998644
No 142
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.46 E-value=71 Score=28.01 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCCCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch--hhhhhhhcCCCCCCCCCCeeEEEeCCC
Q 046053 4 SLHYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN--HRCFLKSRGHHSLDGLPNFRFEAIPDG 74 (199)
Q Consensus 4 ~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~--~~~~~~~~~~~~~~~~~~i~f~~l~~~ 74 (199)
+...+.|++++-..-.||-==|--=|.-||..|++|.++.--.. .+.+. .+|+|+++.++.+
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~---------~hprI~ih~m~~l 71 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL---------NHPRIRIHGMPNL 71 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh---------cCCceEEEeCCCC
Confidence 34567889999999999987788889999999999999876443 22232 2589999999863
No 143
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=48.42 E-value=26 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=21.9
Q ss_pred CceEEEecC--CchhHHHHHHHhCCCcEEEec
Q 046053 124 AVSCIISDD--FMAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 124 ~~d~vI~D~--~~~~~~~vA~~lgIP~v~~~~ 153 (199)
++..||++. ..+.+..+|+++|||+++-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 567788875 445578899999999997554
No 144
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=48.26 E-value=1.1e+02 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=24.8
Q ss_pred cCCCcccHHHHHHHHHHhhhcCcEEEEE
Q 046053 15 PSPFQSHIKAMLQSAKLLHHKGFHITCV 42 (199)
Q Consensus 15 p~p~~GH~~P~l~La~~La~~G~~VT~~ 42 (199)
+-++.|-..-.+.|++.|+++|.+|-++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3467788999999999999999999986
No 145
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=47.96 E-value=51 Score=26.64 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--HHHHHHHhCCCcEEEecc
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TITAAQRLGLPSALFFTI 154 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~ 154 (199)
..+.++.+.+++ .++.||+++....- +..+|++.|+|.+.+.+.
T Consensus 186 ~~l~~l~~~ik~------~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 186 KDLAELIKLIKE------NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHH------TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHHhhh------cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 456666666655 47899999986664 588999999999888877
No 146
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=47.90 E-value=1.2e+02 Score=27.18 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=26.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEE
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCV 42 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~ 42 (199)
|+.-|..+.|-..-.+.|.++|.+||++|--+
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 45567788899999999999999999987543
No 147
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=47.87 E-value=43 Score=28.57 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=36.1
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+...|-+--.||.|--.-.=.|.++|.++||+|.++...+..+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3445667777999999999999999999999999998876554
No 148
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=47.79 E-value=27 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCch
Q 046053 24 AMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 24 P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
--+++|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 357899999999999999987543
No 149
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=47.30 E-value=52 Score=23.00 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=34.5
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
+++....++..|-.-..-++..|.++|+++.++......+.+
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 367788899999999999999999999999999765444333
No 150
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=47.21 E-value=33 Score=28.09 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
-|--.-+..|+++|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 46667899999999999999999987543
No 151
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=47.06 E-value=25 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCcEEEEEeCCc
Q 046053 26 LQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~ 46 (199)
|..|..|+++|++|+++=...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999995543
No 152
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=46.98 E-value=72 Score=24.81 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=48.7
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhh-hhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRC-FLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESS 86 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~-~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~ 86 (199)
.++-+=....|=++-...|+++|.++ |++|.+-++...... ..+.. .+.+....+|. +++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~-------~~~v~~~~~P~---D~~------- 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL-------PDRVDVQYLPL---DFP------- 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--------GGG-SEEE------SSH-------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC-------CCCeEEEEeCc---cCH-------
Confidence 45555677789999999999999987 888877766443332 32210 01333333332 111
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCce-EEEecC-CchhHHHHHHHhCCCcEEEecc-hhHHHHHHH
Q 046053 87 TTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVS-CIISDD-FMAFTITAAQRLGLPSALFFTI-SACSFKGLK 163 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d-~vI~D~-~~~~~~~vA~~lgIP~v~~~~~-~a~~~~~~~ 163 (199)
.. ++.+++.+ +|+ +|+.+. +.+.....|++.|||.+....- +..++.-|.
T Consensus 85 ------~~------------~~rfl~~~---------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls~~s~~~~~ 137 (186)
T PF04413_consen 85 ------WA------------VRRFLDHW---------RPDLLIWVETELWPNLLREAKRRGIPVVLVNARLSERSFRRYR 137 (186)
T ss_dssp ------HH------------HHHHHHHH-----------SEEEEES----HHHHHH-----S-EEEEEE-----------
T ss_pred ------HH------------HHHHHHHh---------CCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeeccccchhhh
Confidence 11 33445554 345 555554 4444688889999999987654 333444444
Q ss_pred hHHHH
Q 046053 164 QFQTL 168 (199)
Q Consensus 164 ~~~~l 168 (199)
.++.+
T Consensus 138 ~~~~~ 142 (186)
T PF04413_consen 138 RFPFL 142 (186)
T ss_dssp ---HH
T ss_pred hhHHH
Confidence 44433
No 153
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=46.82 E-value=92 Score=23.38 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCCcceEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCC
Q 046053 5 LHYKVHAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPD 73 (199)
Q Consensus 5 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 73 (199)
..+..+|++|+....+|+.=.+++.+.+... .+.+.++.-.-....+.... ...++++++.+.-
T Consensus 56 ~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~-----~~~~n~evr~Fn~ 121 (142)
T PF07801_consen 56 SKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLK-----KNFCNVEVRKFNF 121 (142)
T ss_pred cccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH-----hcCCceEEEECCC
Confidence 3567899999999999999999999999988 47777777655554444331 1125888888763
No 154
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=46.14 E-value=48 Score=26.92 Aligned_cols=45 Identities=18% Similarity=0.017 Sum_probs=39.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
--+++.-.|+.|...=.++++...+++|..|-|++++.....+.+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHH
Confidence 346777789999999999999999999999999999887765544
No 155
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=45.74 E-value=1e+02 Score=25.70 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=18.2
Q ss_pred HHHHHHhhhcCcEEEEEeCC
Q 046053 26 LQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~ 45 (199)
+.|++.|+.+|++|+.+..+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHCCCEEEEEecc
Confidence 57899999999999999876
No 156
>COG3150 Predicted esterase [General function prediction only]
Probab=45.09 E-value=42 Score=26.23 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhH
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISAC 157 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~ 157 (199)
..++.++.+.+. +.+-.+=+-.--.|+.-++.++||+.|+|.|.-.-
T Consensus 47 ~ele~~i~~~~~------~~p~ivGssLGGY~At~l~~~~Girav~~NPav~P 93 (191)
T COG3150 47 KELEKAVQELGD------ESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAVRP 93 (191)
T ss_pred HHHHHHHHHcCC------CCceEEeecchHHHHHHHHHHhCChhhhcCCCcCc
Confidence 446666666542 22333333334558999999999999999996443
No 157
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=45.02 E-value=1e+02 Score=26.94 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCCCCCCCceE-EEecC--CchhHHHHHHHhCCCc-EEEecchhHHH
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSC-IISDD--FMAFTITAAQRLGLPS-ALFFTISACSF 159 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~-vI~D~--~~~~~~~vA~~lgIP~-v~~~~~~a~~~ 159 (199)
..++++.+.+.+ .+||+ |..|+ |.......+++.|++. ++++.++-.+.
T Consensus 69 ~~~~~~~~~~~~------~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWA 121 (373)
T PF02684_consen 69 RLFRKLVERIKE------EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWA 121 (373)
T ss_pred HHHHHHHHHHHH------cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceee
Confidence 345555555544 47885 55786 3444566778889983 44555444333
No 158
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=44.87 E-value=1.7e+02 Score=23.77 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=30.7
Q ss_pred CcceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 7 YKVHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 7 ~~~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
+..+++.|+. ++.|=..-...||..|++.|.+|-++=..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3456666655 67788888999999999999999988554
No 159
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=44.72 E-value=22 Score=31.07 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
||+.|++.| ++|.+.||++.++....
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 999997665 68899999999988644
No 160
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=44.51 E-value=13 Score=27.66 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.4
Q ss_pred CCcccHHHHHHHHHHhhhc
Q 046053 17 PFQSHIKAMLQSAKLLHHK 35 (199)
Q Consensus 17 p~~GH~~P~l~La~~La~~ 35 (199)
|-.|-.||+|+|+-+|+-.
T Consensus 57 pe~G~tNPFLHlsmHLsI~ 75 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSIQ 75 (137)
T ss_pred cccCccchhHHHHHHHHHH
Confidence 6789999999999999743
No 161
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=43.97 E-value=30 Score=24.17 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 23 KAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
.|.+.|+++|.++|.+|.+.=+.-.....
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 68999999999999999988776555444
No 162
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.61 E-value=60 Score=21.47 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.3
Q ss_pred ceEEEEcCCCc--ccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 9 VHAVCIPSPFQ--SHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 9 ~hvv~vp~p~~--GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
-.|+++|.... .+..-.+.+++.|.+.|.+|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36788887653 5677789999999999999988554
No 163
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=42.79 E-value=47 Score=25.86 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.0
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+|++.-..+.|=+ =..++.++|.++|++|.++.|+.-.+
T Consensus 3 ~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 3 NILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred EEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 4555544444444 48999999999999999999987554
No 164
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=42.37 E-value=29 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=24.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
=++||..|.||- +..|+++||+|+=+=....
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvDls~~ 70 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVDLSPT 70 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEES-HH
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEecCHH
Confidence 467899999997 7788899999987754433
No 165
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=42.26 E-value=26 Score=27.69 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.8
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhh
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRC 50 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~ 50 (199)
+..|.+.|.+.||+|+++.+...+..
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 66789999778899999999887653
No 166
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.08 E-value=42 Score=24.93 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=29.0
Q ss_pred EEEEcCCCcccHH-HHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 11 AVCIPSPFQSHIK-AMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 11 vv~vp~p~~GH~~-P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
++++-+|-.--.+ -.+-++.+|-.+|++||+..++.-.+
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~k 45 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALK 45 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhhe
Confidence 4555566554444 47889999999999999999886543
No 167
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=41.92 E-value=68 Score=25.56 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEec
Q 046053 106 PFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 106 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~ 153 (199)
.++.+++.+.+. .....+.+||+|--.-.+...|++.|||+..+-.
T Consensus 12 n~~al~~~~~~~--~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDG--RVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcC--CCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 455666555331 0013678999996545578899999999987543
No 168
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=41.67 E-value=2.1e+02 Score=23.91 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=35.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHR 49 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~ 49 (199)
+|+++-..+.|-+.=+..+.+.|.++ +.+|++++.+.+.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~ 42 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRP 42 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHH
Confidence 58999999999999999999999887 89999999876654
No 169
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=41.15 E-value=26 Score=27.87 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHhhhcCcEEEEEeCCchh
Q 046053 27 QSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 27 ~La~~La~~G~~VT~~t~~~~~ 48 (199)
.+.++...|||+||-++-....
T Consensus 15 ~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 15 RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred HHHHHHHhCCCeeEEEEeChHh
Confidence 5789999999999999865443
No 170
>PLN02939 transferase, transferring glycosyl groups
Probab=40.64 E-value=58 Score=32.18 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCcceEEEEcC-----CCcccH-HHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 6 HYKVHAVCIPS-----PFQSHI-KAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~-----p~~GH~-~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
...+||+++.. .-.|-+ .-.-.|.++|+++||+|.++++.-
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46789998854 333444 557889999999999999999843
No 171
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.56 E-value=1.3e+02 Score=25.38 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--HHHHHHHhCCCcEEEecch
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~~ 155 (199)
..+.++++.+++ .++.||+++....- +..++++.|++.+.+-+.+
T Consensus 239 ~~l~~l~~~ik~------~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl~ 285 (311)
T PRK09545 239 QRLHEIRTQLVE------QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPLG 285 (311)
T ss_pred HHHHHHHHHHHH------cCCCEEEecCCCChHHHHHHHHhcCCeEEEecccc
Confidence 455666666654 47999999987664 6889999999988775553
No 172
>PRK14099 glycogen synthase; Provisional
Probab=40.50 E-value=54 Score=29.53 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=29.4
Q ss_pred cceEEEEcC-----CCc-ccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 8 KVHAVCIPS-----PFQ-SHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 8 ~~hvv~vp~-----p~~-GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.++|+++.. .=. |--.-+-.|.++|+++||+|.++.+-
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 467777754 222 55577889999999999999999984
No 173
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.03 E-value=68 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=30.3
Q ss_pred ceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 9 VHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 9 ~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
++++.|.. ++.|=..-...||..|+++|.+|.++=....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 55555544 5678888999999999999999988866543
No 174
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=39.99 E-value=81 Score=20.20 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=27.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEe
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t 43 (199)
+++...++.|=..-...|++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445556688888889999999999999998876
No 175
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=39.75 E-value=80 Score=22.47 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=33.1
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
||++.--++.|=......|++.|+++|.+|-++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999988876
No 176
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=39.64 E-value=2.3e+02 Score=23.80 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=36.7
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~ 51 (199)
+|+++-+.+.|-+.=+..+.+.|.++ +.+|++++.+.+..-+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPIL 44 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHH
Confidence 58899999999999999999999887 8999999998876533
No 177
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=39.31 E-value=2.8e+02 Score=24.75 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=72.7
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEe-CCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVN-TEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESS 86 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t-~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~ 86 (199)
-.+-+=..+.|=++-...|.++|.++ +.++++-| |+.-.+.+.+.- ...+....+|- +++.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~-------~~~v~h~YlP~---D~~~------ 113 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF-------GDSVIHQYLPL---DLPI------ 113 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc-------CCCeEEEecCc---CchH------
Confidence 46677778889999999999999999 77887777 444444444321 12355555553 2210
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCce-EEEecC-CchhHHHHHHHhCCCcEEEec-chhHHHHHHH
Q 046053 87 TTQDMYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVS-CIISDD-FMAFTITAAQRLGLPSALFFT-ISACSFKGLK 163 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d-~vI~D~-~~~~~~~vA~~lgIP~v~~~~-~~a~~~~~~~ 163 (199)
. +.++++.+ +|+ +||.+. +.+-...-+++.|||.+...- .|.-++.-|.
T Consensus 114 -------~------------v~rFl~~~---------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~ 165 (419)
T COG1519 114 -------A------------VRRFLRKW---------RPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYA 165 (419)
T ss_pred -------H------------HHHHHHhc---------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHH
Confidence 1 33445553 566 666665 444468888999999998765 3445555554
Q ss_pred hHHHH
Q 046053 164 QFQTL 168 (199)
Q Consensus 164 ~~~~l 168 (199)
.+..+
T Consensus 166 k~~~~ 170 (419)
T COG1519 166 KLKFL 170 (419)
T ss_pred HHHHH
Confidence 44443
No 178
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=39.29 E-value=1.2e+02 Score=24.90 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--HHHHHHHhCCCcEEEecc
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TITAAQRLGLPSALFFTI 154 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~ 154 (199)
..+.++++.+++ .++.||+++....- +..+|++.|++.+.+.+.
T Consensus 207 ~~l~~l~~~ik~------~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 207 KQLAELVEFVKK------SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHHH------cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 456666666654 47899999987663 678999999999887764
No 179
>PRK09620 hypothetical protein; Provisional
Probab=39.14 E-value=33 Score=27.73 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.1
Q ss_pred CcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 18 FQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 18 ~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
+.|.+- .+||++|..+|++|+++...
T Consensus 27 SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 27 AKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 334443 67899999999999998754
No 180
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=39.13 E-value=51 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred EecCCchhHHHHHHHhCCCcEEEecchhHHHHHHHhHHHHH-HcCC--CCCCCcc
Q 046053 129 ISDDFMAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLK-EKGL--FPLKDES 180 (199)
Q Consensus 129 I~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~~~~l~-~~~~--~~~~~~~ 180 (199)
|+|-+..-+..++-+-+.|.++.-.+...+..---++-+|. .+|+ +||..++
T Consensus 100 iaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~~Ni~~L~~~~g~~~v~f~qd~ 154 (187)
T TIGR02852 100 MTDSPVLMAAKATLRNNKPVVLAISTNDALGLNAVNLMRLLNTKNIYFVPFGQDD 154 (187)
T ss_pred ccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCHHHHHHHHHcCCEEEEeecCCC
Confidence 44554444555555567888877666666555557777775 6775 5776554
No 181
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=39.04 E-value=67 Score=26.96 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEe
Q 046053 104 LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFF 152 (199)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~ 152 (199)
...+++++.......- ...+.+||+|- ..+..+|+++|||++.+.
T Consensus 100 g~nl~al~~~~~~~~~--~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 100 DHCLNDLLYRWRIGEL--PMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred cccHHHHHHHHHcCCC--CcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 3567888876643100 14678899984 346667999999999864
No 182
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=38.66 E-value=50 Score=23.16 Aligned_cols=38 Identities=5% Similarity=0.251 Sum_probs=30.0
Q ss_pred EEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 12 VCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 12 v~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+++-+...|+...++++++.+.++|..|..+|.....+
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 34444477888999999999999999998888765543
No 183
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=38.20 E-value=87 Score=26.48 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=21.3
Q ss_pred CCceEEEe--cCCchh-HHHHHHHhCCCcEEE
Q 046053 123 PAVSCIIS--DDFMAF-TITAAQRLGLPSALF 151 (199)
Q Consensus 123 ~~~d~vI~--D~~~~~-~~~vA~~lgIP~v~~ 151 (199)
.+||+|++ |..... +..+|..+|||++..
T Consensus 85 ~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 85 EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 36898877 554443 577889999999865
No 184
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=37.91 E-value=2.1e+02 Score=22.79 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=32.7
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEe
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t 43 (199)
++-=|.+++.++.|-..-.+.+|-+-+.+|.+|-++-
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 3455889999999999999999999999999998874
No 185
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=37.79 E-value=1.5e+02 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 24 AMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 24 P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
=+..|++.|.+.|+++ +.|....+.++.
T Consensus 16 ~iv~lAk~L~~lGfeI--~AT~GTak~L~e 43 (513)
T PRK00881 16 GIVEFAKALVELGVEI--LSTGGTAKLLAE 43 (513)
T ss_pred cHHHHHHHHHHCCCEE--EEcchHHHHHHH
Confidence 3789999999999988 466777776654
No 186
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=37.36 E-value=64 Score=24.13 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHH-HHHHHHHhhhcCcEEEEEeCCchhhhhhhh
Q 046053 22 IKA-MLQSAKLLHHKGFHITCVNTEFNHRCFLKS 54 (199)
Q Consensus 22 ~~P-~l~La~~La~~G~~VT~~t~~~~~~~~~~~ 54 (199)
..| .+-|+..|..+|++|++..++.-.+-++.+
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 344 688999999999999999999776645443
No 187
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.28 E-value=63 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=29.0
Q ss_pred CCCcceEEEEcCCCc--ccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 5 LHYKVHAVCIPSPFQ--SHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 5 ~~~~~hvv~vp~p~~--GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
++..++|+++.-|+- |--+ -.+|+|+..|+.++++..-
T Consensus 263 ~~~~P~V~Ilcgpgnnggdg~---v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 263 SHQWPLVAILCGPGNNGGDGL---VCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred cCCCceEEEEeCCCCccchhH---HHHHHHHHcCceeEEEeec
Confidence 345788999998875 2222 2899999999999988765
No 188
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=37.06 E-value=35 Score=27.49 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCcEEEEEeCC
Q 046053 26 LQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~ 45 (199)
.+||++|+++|++|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 56789999999999998743
No 189
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=37.02 E-value=95 Score=25.08 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=35.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhc-CcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHK-GFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~-G~~VT~~t~~~~~~~~ 51 (199)
+++...|+.|-..=++++|..++.+ |+.|.|++.+.....+
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 5667789999999999999999998 6999999999876654
No 190
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=36.96 E-value=1.4e+02 Score=23.20 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=25.0
Q ss_pred CceEEEecCCc--hhHHHHHHHhCCCcEEEecchh
Q 046053 124 AVSCIISDDFM--AFTITAAQRLGLPSALFFTISA 156 (199)
Q Consensus 124 ~~d~vI~D~~~--~~~~~vA~~lgIP~v~~~~~~a 156 (199)
+||+||..... .....--.+.|||++.+.....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 79999988766 4556667788999999988763
No 191
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=36.56 E-value=39 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=25.5
Q ss_pred CCcceEEEEcCCCcccHH-HHHHHHHHhhhcCcEEEEEeC
Q 046053 6 HYKVHAVCIPSPFQSHIK-AMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~-P~l~La~~La~~G~~VT~~t~ 44 (199)
....+|+++.-++ +-- =-+-+||+|+++|++|+++..
T Consensus 23 ~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 3456777777664 332 267889999999999999543
No 192
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.51 E-value=1e+02 Score=25.47 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=33.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
.-|+++..+|.|=..-...||..|+.+|.+|.++....+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 346667778899999999999999999999999998864
No 193
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=36.15 E-value=23 Score=30.43 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=24.3
Q ss_pred Cce-EEEecCCch-hHHHHHHHhCCCcEEEecch
Q 046053 124 AVS-CIISDDFMA-FTITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 124 ~~d-~vI~D~~~~-~~~~vA~~lgIP~v~~~~~~ 155 (199)
.|| +||.|.... .+..-|.++|||.+.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 577 556676443 57889999999999987665
No 194
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=36.09 E-value=38 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHhhhcCcEEEEEeCCc
Q 046053 26 LQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~ 46 (199)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 368999999999999999985
No 195
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.99 E-value=54 Score=25.30 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchhH--HHHHHHhCCCcEEEecc
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFT--ITAAQRLGLPSALFFTI 154 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~--~~vA~~lgIP~v~~~~~ 154 (199)
..++.+++.. .++.-+|.|.|++.+ ..+|.++|--++.+=..
T Consensus 179 ~l~~~lI~~~--------t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~ 222 (231)
T PF01555_consen 179 ELIERLIKAS--------TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEID 222 (231)
T ss_dssp HHHHHHHHHH--------S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHhh--------hccceeeehhhhccChHHHHHHHcCCeEEEEeCC
Confidence 3556666554 245778999999874 77889999888776544
No 196
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=35.97 E-value=98 Score=23.12 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=33.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
+++.-.||.|=......|++.|+.+|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777899999999999999999999999999987654
No 197
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.94 E-value=38 Score=24.73 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.7
Q ss_pred HHHHHHHhhhcCcEEEEEeC
Q 046053 25 MLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~ 44 (199)
.+..|++|+.+|++|+..-.
T Consensus 25 ~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred HHHHHHHHHHcCCcEEEEec
Confidence 57899999999998877643
No 198
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.86 E-value=60 Score=25.15 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=26.3
Q ss_pred CCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 16 SPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 16 ~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
..|-+...-...|.++|.++|++|.++.|+.-.+
T Consensus 7 vtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 7 VTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 3444455566799999999999999999986544
No 199
>PRK10481 hypothetical protein; Provisional
Probab=35.56 E-value=74 Score=25.76 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=31.3
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEecCCchh---HHHHHHHhCCCcEEEecchhH
Q 046053 106 PFLDLLAKLSDSSNNVNPAVSCIISDDFMAF---TITAAQRLGLPSALFFTISAC 157 (199)
Q Consensus 106 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~---~~~vA~~lgIP~v~~~~~~a~ 157 (199)
.+.+..+++.. .+.|+||.|..... ...+.+.+|+|++.-.+..+.
T Consensus 170 ~l~~aa~~L~~------~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar 218 (224)
T PRK10481 170 ELIDAGKELLD------QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVAR 218 (224)
T ss_pred HHHHHHHHhhc------CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHH
Confidence 34455566643 47899999974433 367788999999976655443
No 200
>PLN02891 IMP cyclohydrolase
Probab=35.47 E-value=1.8e+02 Score=26.77 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCC
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPA 80 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 80 (199)
+..||+.|.+.|++ ++.|....+.++.. +|....+.+.. ++|+
T Consensus 35 i~~fAk~L~~~gve--IiSTgGTak~L~e~----------Gi~v~~Vsd~T-gfPE 77 (547)
T PLN02891 35 LALLANGLQELGYT--IVSTGGTASALEAA----------GVSVTKVEELT-NFPE 77 (547)
T ss_pred HHHHHHHHHHCCCE--EEEcchHHHHHHHc----------CCceeeHHhcc-CCch
Confidence 67899999999865 56788777766542 56666665432 4443
No 201
>PTZ00445 p36-lilke protein; Provisional
Probab=34.91 E-value=34 Score=27.59 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=24.2
Q ss_pred ccHHH-HHHHHHHhhhcCcEEEEEeCCch
Q 046053 20 SHIKA-MLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 20 GH~~P-~l~La~~La~~G~~VT~~t~~~~ 47 (199)
+|..| +..|.++|.+.|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56777 88999999999999999997654
No 202
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=34.44 E-value=95 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=32.6
Q ss_pred EEEcC-CCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 12 VCIPS-PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 12 v~vp~-p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
.|... .|.|=..-.+.||.+|+++|-+|+++=+.++..
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 33333 678999999999999999999999999988875
No 203
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=34.15 E-value=56 Score=21.86 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=19.6
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
++.+++.|++.|+++ +.|+...+.++
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~ 27 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLR 27 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHH
Confidence 468999999999988 45666665554
No 204
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.01 E-value=80 Score=26.21 Aligned_cols=42 Identities=10% Similarity=0.020 Sum_probs=37.1
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~ 51 (199)
+|+++-+...|-+.=+..+.+.|.++ +.+||+++.+.+..-+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~ 44 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIV 44 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhh
Confidence 58899999999999999999999998 9999999998776544
No 205
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=33.74 E-value=98 Score=22.78 Aligned_cols=36 Identities=6% Similarity=0.158 Sum_probs=28.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
+.|.++-+..-|=..=+-.|+++|.++|++|.++--
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 457788888889999999999999999999996543
No 206
>PRK05973 replicative DNA helicase; Provisional
Probab=33.64 E-value=99 Score=25.20 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=36.8
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
-+++.--||.|=..=.++++...+.+|..|.|++.+...+.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHH
Confidence 3566777999999999999999999999999999988765553
No 207
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.62 E-value=1.1e+02 Score=20.83 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=24.8
Q ss_pred ceEEEecCCch---h-HHHHHHHhCCCcEEEecchhHHH
Q 046053 125 VSCIISDDFMA---F-TITAAQRLGLPSALFFTISACSF 159 (199)
Q Consensus 125 ~d~vI~D~~~~---~-~~~vA~~lgIP~v~~~~~~a~~~ 159 (199)
.-.+++|+... | +...|++.|+|++.....+...+
T Consensus 51 ~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 51 LVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred EEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 33446776433 2 58889999999999886666644
No 208
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.38 E-value=51 Score=26.86 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=64.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQD 90 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~ 90 (199)
|++--+|+.|-..=.-+|+|+|.+++++|..++..-.. ..+.|. .+|-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~--------------------~i~~DE--slpi---------- 51 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR--------------------GILWDE--SLPI---------- 51 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh--------------------heeccc--ccch----------
Confidence 56677899999999999999999999988665432111 111121 1211
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchh------HHHHHHHhCCCcEEEecchhHHHHHHHh
Q 046053 91 MYSLCENIINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF------TITAAQRLGLPSALFFTISACSFKGLKQ 164 (199)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~------~~~vA~~lgIP~v~~~~~~a~~~~~~~~ 164 (199)
........ ..+....++.+. -+=.+||+|..... ....|+++..+|.+.+.-...-++.-.+
T Consensus 52 ~ke~yres----~~ks~~rlldSa--------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN 119 (261)
T COG4088 52 LKEVYRES----FLKSVERLLDSA--------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN 119 (261)
T ss_pred HHHHHHHH----HHHHHHHHHHHH--------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh
Confidence 01111111 111222233321 12258888875442 3557788899999988877777776554
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.81 E-value=81 Score=24.71 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=32.8
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
-|+++-..|-|=..-...||.++..+|.+|.+++...++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 367777889999999999999999999999999998764
No 210
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.50 E-value=1.3e+02 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.3
Q ss_pred eEEEecCCch-hHHHHHHHhCCCcEEEecchhHHH
Q 046053 126 SCIISDDFMA-FTITAAQRLGLPSALFFTISACSF 159 (199)
Q Consensus 126 d~vI~D~~~~-~~~~vA~~lgIP~v~~~~~~a~~~ 159 (199)
.++|--.+-+ ++..+|+++|+|.|.+.|+--...
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~ 95 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYE 95 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHH
Confidence 4666555555 478899999999999998755443
No 211
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.45 E-value=1.1e+02 Score=19.83 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=27.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.|+++++ ..++..-.+.+++.|.+.|++|.+-...
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~~ 37 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLRN 37 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4666665 4678888999999999999999885443
No 212
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=32.23 E-value=76 Score=24.65 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 26 LQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
.+|.++|.++|++|.++.|+.-.+-+
T Consensus 16 ~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 16 IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 78999999999999999998766543
No 213
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.13 E-value=2.4e+02 Score=23.30 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--HHHHHHHhCCCcEEEecch
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~~ 155 (199)
..+.++++.+++ .++.||+++....- +..++++.|++.+.+.+..
T Consensus 215 ~~l~~l~~~ik~------~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l~ 261 (286)
T cd01019 215 KRLAKIRKEIKE------KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPLG 261 (286)
T ss_pred HHHHHHHHHHHH------cCCcEEEecCCCChHHHHHHHHhcCceEEEecccc
Confidence 455666666654 47999999987664 6899999999888776553
No 214
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=32.13 E-value=1.4e+02 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEec
Q 046053 106 PFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 106 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~ 153 (199)
.++.+++.+.+. +....+.+||+|--...+...|++.|||+..+.+
T Consensus 14 ~~~~ll~~~~~~--~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 14 NLQAIIDACAAG--QLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred hHHHHHHHHHcC--CCCcEEEEEEecCccchHHHHHHHcCCCEEEECc
Confidence 345555555431 0002466778886334478899999999987554
No 215
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=32.12 E-value=1.4e+02 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=22.5
Q ss_pred CceEEEecCCchhHHHHHHHhCCCcEEEec
Q 046053 124 AVSCIISDDFMAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 124 ~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~ 153 (199)
.+.+||+|---..+...|++.|||++.+.+
T Consensus 29 ~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 29 SVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred eEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 477888996434457889999999887543
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.80 E-value=1.2e+02 Score=27.08 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=36.2
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+..|+++-.+|.|=..-...||+.|..+|++|.+++......
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 445777888999999999999999999999999999876543
No 217
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=31.74 E-value=3.1e+02 Score=24.17 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEE-ecCCchhHHHHH---HHhC--CCcEEEecch
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCII-SDDFMAFTITAA---QRLG--LPSALFFTIS 155 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI-~D~~~~~~~~vA---~~lg--IP~v~~~~~~ 155 (199)
...+++++.+.+ .+||++| .|. -.+-..+| ++.| +|.+.|..-+
T Consensus 72 k~~~~~~~~i~~------~kpD~~i~IDs-PdFnl~vak~lrk~~p~i~iihYV~Ps 121 (381)
T COG0763 72 KIRRELVRYILA------NKPDVLILIDS-PDFNLRVAKKLRKAGPKIKIIHYVSPS 121 (381)
T ss_pred HHHHHHHHHHHh------cCCCEEEEeCC-CCCchHHHHHHHHhCCCCCeEEEECcc
Confidence 345566665544 4788554 564 22333333 4556 8888876655
No 218
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.70 E-value=92 Score=25.73 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=24.0
Q ss_pred CceEEEecCCch------hHHHHHHHhCCCcEEEecc
Q 046053 124 AVSCIISDDFMA------FTITAAQRLGLPSALFFTI 154 (199)
Q Consensus 124 ~~d~vI~D~~~~------~~~~vA~~lgIP~v~~~~~ 154 (199)
.||+|++-.... -+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 499999854332 2588999999999988764
No 219
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.69 E-value=1.2e+02 Score=23.87 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=32.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
+.+.-.|+.|...=.++++...+.+|..|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56677799999999999999999999999999998
No 220
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=31.65 E-value=67 Score=26.53 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=29.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
.+++++. .+.| +.|++.++++|+++|.+|+++....+.+
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 4566665 2333 7999999999999999999887655543
No 221
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=31.63 E-value=39 Score=27.57 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=19.7
Q ss_pred HHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 27 QSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 27 ~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
-+|..|++.||+||++.-....+.++
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~ 30 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALN 30 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHH
Confidence 36889999999999998764444443
No 222
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=31.57 E-value=1e+02 Score=27.21 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCceEEEec-CCchhHHHHHHHhCCCcEEEe-cchhHHHHHHH
Q 046053 123 PAVSCIISD-DFMAFTITAAQRLGLPSALFF-TISACSFKGLK 163 (199)
Q Consensus 123 ~~~d~vI~D-~~~~~~~~vA~~lgIP~v~~~-~~~a~~~~~~~ 163 (199)
....+++.. ....++..+.+++|+|++.+. +.+.....-++
T Consensus 222 A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p~G~~~t~~~l 264 (428)
T cd01965 222 AKATIALGEYSGRKAAKALEEKFGVPYILFPTPIGLKATDEFL 264 (428)
T ss_pred CcEEEEEChhhhHHHHHHHHHHHCCCeeecCCCcChHHHHHHH
Confidence 367888887 666778888889999999876 66655544443
No 223
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.38 E-value=1.1e+02 Score=27.31 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=35.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
.-|+++-.+|.|=..-...||..|..+|.+|.++++..+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34667777999999999999999999999999999987653
No 224
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=31.34 E-value=97 Score=25.10 Aligned_cols=37 Identities=5% Similarity=-0.079 Sum_probs=30.1
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
.|.+..=.|-|-..-...||..|+.+|.+|-++=...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3555656788999999999999999999998875543
No 225
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=31.34 E-value=1.9e+02 Score=21.69 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHH--H-H-HH-Hh-CCCcEEEecch
Q 046053 103 LLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTI--T-A-AQ-RL-GLPSALFFTIS 155 (199)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~--~-v-A~-~l-gIP~v~~~~~~ 155 (199)
+...+.+++++ .+||+||+=..+.... . + .+ .+ ++|.+...|=.
T Consensus 77 ~~~~l~~~l~~---------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 77 FARRLIRLLRE---------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHHhh---------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 33445555554 4899999987553322 2 1 12 23 57887777755
No 226
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.24 E-value=81 Score=24.47 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=26.9
Q ss_pred CCCcccHHH-HHHHHHHhhh-cCcEEEEEeCCchhh
Q 046053 16 SPFQSHIKA-MLQSAKLLHH-KGFHITCVNTEFNHR 49 (199)
Q Consensus 16 ~p~~GH~~P-~l~La~~La~-~G~~VT~~t~~~~~~ 49 (199)
..|-||... ..++.++|.+ +|++|.++.|+.-.+
T Consensus 6 itGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 6 ITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 344588866 8899999985 599999999986553
No 227
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=31.12 E-value=86 Score=26.19 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=36.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~ 49 (199)
+||+++-..+.|-+.=...+.+.|.++ +.+||+++.+.+..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 479999999999999999999999887 99999999887654
No 228
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=31.00 E-value=28 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCceEE-EecCCc-hhHHHHHHHhCCCcEEEecchh
Q 046053 123 PAVSCI-ISDDFM-AFTITAAQRLGLPSALFFTISA 156 (199)
Q Consensus 123 ~~~d~v-I~D~~~-~~~~~vA~~lgIP~v~~~~~~a 156 (199)
..||+| |.|... ..+.--|.++|||.+.+.-+.+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 467854 556533 3578899999999999987764
No 229
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=30.93 E-value=51 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 25 MLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
++++|++|++.|+ .++.|+...+.+++
T Consensus 2 ~~~~a~~l~~lG~--~i~AT~gTa~~L~~ 28 (95)
T PF02142_consen 2 IVPLAKRLAELGF--EIYATEGTAKFLKE 28 (95)
T ss_dssp HHHHHHHHHHTTS--EEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEChHHHHHHHH
Confidence 5789999999995 45677777776654
No 230
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=30.83 E-value=51 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHHHhhhcCcEEEEEeCCch
Q 046053 26 LQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~~ 47 (199)
..++++|.++||+|+.++-...
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGG
T ss_pred HHHHHHHHHCCCEEEEEecCch
Confidence 3589999999999999987644
No 231
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.82 E-value=91 Score=27.46 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEEe
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALFF 152 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~ 152 (199)
.+||++|.+. +...+|+++|+|.+.+.
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 3689999886 45667899999998763
No 232
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.78 E-value=1.1e+02 Score=25.68 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEec
Q 046053 104 LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~ 153 (199)
...++++++..... .-...+.+||+|- ..+...|+++|||++.+..
T Consensus 95 g~nl~~l~~~~~~g--~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 95 DHCLGDLLWRWYSG--ELDAEIALVISNH--EDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred ChhHHHHHHHHHcC--CCCcEEEEEEEcC--hhHHHHHHHhCCCEEEcCC
Confidence 35788888876531 0013578899985 3445579999999988765
No 233
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.61 E-value=86 Score=21.98 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=28.3
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCc-EEEEEeC
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGF-HITCVNT 44 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~~t~ 44 (199)
.++.++.+.+....|+....++++++.+++. ++.++..
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 4677888888878888888888888888766 6655544
No 234
>PLN00016 RNA-binding protein; Provisional
Probab=30.41 E-value=67 Score=27.58 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=25.4
Q ss_pred CcceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 7 YKVHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 7 ~~~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+..+|+++.. .+.|.+ -.+|+++|.++||+|+.++-..
T Consensus 51 ~~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 3456777621 233433 3567899999999999988653
No 235
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.16 E-value=88 Score=23.64 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=20.5
Q ss_pred CceEEEecCCchh--HHHHHHHhCCCcEEEec
Q 046053 124 AVSCIISDDFMAF--TITAAQRLGLPSALFFT 153 (199)
Q Consensus 124 ~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~ 153 (199)
+||+||....... ....-++.|||++.+..
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 7999998643322 34445788999988753
No 236
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=30.08 E-value=1.2e+02 Score=22.72 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=29.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
+.++-+.+.|=..-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45677788898888999999999999999998754
No 237
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=30.01 E-value=49 Score=24.11 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=20.2
Q ss_pred HHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 27 QSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 27 ~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
-+|.+|++.|++|++++.....+.+.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~ 37 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIK 37 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhh
Confidence 36889999999999999887334343
No 238
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=29.88 E-value=51 Score=27.37 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
||+.| +...++|.+.||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7777889888999988765
No 239
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=29.74 E-value=95 Score=26.19 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=31.3
Q ss_pred eEEEEcC-CCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 10 HAVCIPS-PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 10 hvv~vp~-p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+++++.. .|-|=..-...+|.++|++|.+|-++++.+.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4455554 566888889999999999999999999987654
No 240
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=29.48 E-value=86 Score=26.25 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=26.7
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
++.++|+++-..+.| .-+|.+|++.||+|+++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 345678888555555 345788999999999998754
No 241
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.47 E-value=1.4e+02 Score=27.34 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecc
Q 046053 104 LQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTI 154 (199)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~ 154 (199)
.+..+..++++.+ .++++||.|. -+...|+++|++.+...+.
T Consensus 131 ~~e~~~~~~~l~~------~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA------RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH------CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 4567777888766 4799999997 3578999999999988764
No 242
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=29.26 E-value=67 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=23.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
=++.+..|.|+- +..||++|++||-+=....
T Consensus 37 rvLd~GCG~G~d------a~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 37 RVFVPLCGKSLD------LAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred eEEEeCCCchhH------HHHHHhCCCeEEEEeCCHH
Confidence 467888888876 7788899999998765443
No 243
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=29.22 E-value=1e+02 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=27.5
Q ss_pred eEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 10 HAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 10 hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
||++|-. .|.|--.-.++||-.|+..|++|-++=.....
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q 41 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQ 41 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4555544 67788899999999999999999999876543
No 244
>PLN02828 formyltetrahydrofolate deformylase
Probab=28.95 E-value=1.5e+02 Score=24.70 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhhccCCCCCCCceEEEecCC---chhHHHHHHHhCCCcEEEec
Q 046053 104 LQPFLDLLAKLSDSSNNVNPAVSCIISDDF---MAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~---~~~~~~vA~~lgIP~v~~~~ 153 (199)
...+++++....+. .-...+.+||++-- ...+...|+++|||++.+-.
T Consensus 81 g~nl~~ll~~~~~g--~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 81 DHCLIDLLHRWQDG--RLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred ChhHHHHHHhhhcC--CCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 35677888776431 00135789999862 23578899999999986544
No 245
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.87 E-value=1.2e+02 Score=25.47 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecc
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTI 154 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~ 154 (199)
..+++++....+. .-...+.+||+|- ..+...|+++|||++.+...
T Consensus 105 ~nl~al~~~~~~~--~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~ 150 (289)
T PRK13010 105 HCLNDLLYRWRMG--ELDMDIVGIISNH--PDLQPLAVQHDIPFHHLPVT 150 (289)
T ss_pred ccHHHHHHHHHCC--CCCcEEEEEEECC--hhHHHHHHHcCCCEEEeCCC
Confidence 4678888776531 0013677899985 34568999999999987543
No 246
>PRK05920 aromatic acid decarboxylase; Validated
Probab=28.71 E-value=91 Score=24.82 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=30.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
.+|++- ..|-....=...+.++|.+.|++|+++.|+.-.+-+
T Consensus 4 krIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 444443 444445567889999999999999999998765433
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.53 E-value=1.6e+02 Score=21.92 Aligned_cols=41 Identities=15% Similarity=-0.082 Sum_probs=35.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
+++.--||.|=..=.++++...+.+|..|.|++++...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 46677789999999999999999999999999998776554
No 248
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=28.43 E-value=42 Score=28.80 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=26.7
Q ss_pred EcCCCc-ccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 14 IPSPFQ-SHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 14 vp~p~~-GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
+|+|.. |.-.=+.+++++|+++ |+||+++-..+
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~ 41 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDD 41 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCC
Confidence 566554 8888899999999776 89999997643
No 249
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.23 E-value=55 Score=29.64 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=26.9
Q ss_pred ceEEEEcCCCcccHHHH------------HHHHHHhhhcCcEEEEEeCCc
Q 046053 9 VHAVCIPSPFQSHIKAM------------LQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~------------l~La~~La~~G~~VT~~t~~~ 46 (199)
.+|++-..|..=-+.|. ..||+++..+|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 45555555555444442 578999999999999998654
No 250
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.87 E-value=1.1e+02 Score=23.60 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=36.2
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
...++++-.+|.|=..=...+++++..+|+.|-|++.......+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 4568888889999888899999999999999999998877666654
No 251
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=27.78 E-value=57 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=24.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
..-++++-...|= -.++|++||+||++|.++.=.
T Consensus 6 ~~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 6 GKTALITGASSGI---GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CcEEEEECCCchH---HHHHHHHHHHCCCEEEEEeCc
Confidence 3345566555542 367899999999999998643
No 252
>PRK06849 hypothetical protein; Provisional
Probab=27.74 E-value=1.4e+02 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=26.2
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
+++|++.- |-..-.+++++.|.++|++|+++.....
T Consensus 4 ~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 4 KKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45565553 2222589999999999999999987653
No 253
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.65 E-value=1.2e+02 Score=21.26 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 23 KAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
.=++.+|+.|...|+++ +.|+...+.++.
T Consensus 12 ~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~ 40 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL--FATGGTSRVLAD 40 (112)
T ss_pred HHHHHHHHHHHHCCCEE--EECcHHHHHHHH
Confidence 34789999999999987 466666765644
No 254
>PRK10867 signal recognition particle protein; Provisional
Probab=27.49 E-value=1.5e+02 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=35.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhc-CcEEEEEeCCchhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHK-GFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~~t~~~~~~ 49 (199)
.-|+++-.+|.|=..-...||..|+.+ |.+|.++..+.+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 446677778999999999999999999 99999999987654
No 255
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=27.45 E-value=1.3e+02 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=31.6
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
.+.+|.+-..||.|-.--||+=|++|.++|.+|.+-..+..
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 46789999999999999999999999999999998766654
No 256
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=27.44 E-value=3.9e+02 Score=22.76 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCch--hHHHHHHHhCCCcEEEecchhHHHH
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMA--FTITAAQRLGLPSALFFTISACSFK 160 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgIP~v~~~~~~a~~~~ 160 (199)
+..+..++++-+. ..|.+||++-+.. +...+|++.+||.+...-.+....+
T Consensus 69 e~~~~~~~~~~~~-----~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~~~~ 121 (304)
T TIGR00679 69 EEQKQIIHNLLTL-----NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTELSF 121 (304)
T ss_pred HHHHHHHHHHhCC-----CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHHHHH
Confidence 4455555665442 5788999986554 5799999999999986665544433
No 257
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=27.37 E-value=1.3e+02 Score=21.73 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=29.8
Q ss_pred EEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 12 VCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 12 v~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+|++..+.|=..-.+.|++.|.++|.+|-++-+-.
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56777888888999999999999999999985543
No 258
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=27.29 E-value=73 Score=28.21 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
-||+.|++. .++|.+.||++.++....
T Consensus 49 lGhlv~l~~-l~~lq~~G~~~~~ligd~ 75 (410)
T PRK13354 49 IGHLVPLMK-LKRFQDAGHRPVILIGGF 75 (410)
T ss_pred hhhHHHHHH-HHHHHHcCCeEEEEEccc
Confidence 399999666 568899999999988543
No 259
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=27.19 E-value=1.6e+02 Score=23.83 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=34.9
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc-CcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK-GFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~~t~~~~~~~~ 51 (199)
-+++.--|+.|=..-+++++..++.+ |..|.|++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 45667778999999999999999887 9999999998765433
No 260
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.18 E-value=62 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.4
Q ss_pred ceEEEEcCCCcccHH-HHHHHHHHhhhcCcEEEEEeC
Q 046053 9 VHAVCIPSPFQSHIK-AMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~-P~l~La~~La~~G~~VT~~t~ 44 (199)
.+|+++.-++ +-- =-+-+||+|+.+|++|+++..
T Consensus 61 ~~V~VlcG~G--NNGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPG--NNGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCC--CCchhHHHHHHHHHHCCCeEEEEEc
Confidence 4677777654 321 257789999999999999984
No 261
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.13 E-value=71 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 23 KAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
-+++++.+.|.++|+.|-++|.-..
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 4689999999999999999998654
No 262
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=27.13 E-value=56 Score=26.70 Aligned_cols=28 Identities=4% Similarity=-0.285 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 20 SHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 20 GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
|--.=+.+|+++|+++|+.|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445589999999999999999988654
No 263
>PRK04940 hypothetical protein; Provisional
Probab=27.11 E-value=2e+02 Score=22.50 Aligned_cols=34 Identities=9% Similarity=-0.031 Sum_probs=26.1
Q ss_pred ceEEEecCCch-hHHHHHHHhCCCcEEEecchhHH
Q 046053 125 VSCIISDDFMA-FTITAAQRLGLPSALFFTISACS 158 (199)
Q Consensus 125 ~d~vI~D~~~~-~~~~vA~~lgIP~v~~~~~~a~~ 158 (199)
+.++|--.+-+ |+.-+|+++|+|.|.+.|+--..
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChH
Confidence 45666555544 79999999999999999985543
No 264
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.09 E-value=2.2e+02 Score=22.25 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=26.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
|+|+..++.-|-.=+..++++|+..|.+|.++.-.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 77777777777666778888888888888777653
No 265
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.08 E-value=1.3e+02 Score=24.37 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=36.2
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc--CcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK--GFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~~t~~~~~~~~ 51 (199)
+|+++-..+.|-+.=+..+.+.|.++ +.+||+++.+.+..-+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 57888899999999999999999998 4899999998766543
No 266
>PRK12342 hypothetical protein; Provisional
Probab=26.81 E-value=1e+02 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=24.0
Q ss_pred CceEEEecCCch------hHHHHHHHhCCCcEEEecc
Q 046053 124 AVSCIISDDFMA------FTITAAQRLGLPSALFFTI 154 (199)
Q Consensus 124 ~~d~vI~D~~~~------~~~~vA~~lgIP~v~~~~~ 154 (199)
.||+|++-.... -+..+|+.||+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 489999854332 2688999999999988754
No 267
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=26.80 E-value=74 Score=26.30 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
-||+.|++ ..++|.+.|+++.++....
T Consensus 16 LG~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 16 LGHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred HHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 39999976 6788888899999988764
No 268
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=26.74 E-value=1.3e+02 Score=24.24 Aligned_cols=36 Identities=3% Similarity=-0.111 Sum_probs=28.6
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.|.+.-=.|-|=.+-...||..||++|++|-++=..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 355554567788899999999999999999887443
No 269
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=26.71 E-value=1.5e+02 Score=26.95 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCch----hHHHHHHHhCCCcEEEe
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMA----FTITAAQRLGLPSALFF 152 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~----~~~~vA~~lgIP~v~~~ 152 (199)
..+.++++.+++ .++.||+++.... .+..+|++.|+|.+.+.
T Consensus 407 ~~L~~Li~~IK~------~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~ 452 (479)
T TIGR03772 407 ADRRRLTRTIEN------LKVPAVFLEPNLAARSTTLNEIADELGVRVCAIY 452 (479)
T ss_pred HHHHHHHHHHHH------cCCCEEEEeCCCCCchHHHHHHHHHcCCcEEeee
Confidence 346667666665 4799999998764 26889999999987764
No 270
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.71 E-value=56 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHhhhcCcEEEEEeCCchh
Q 046053 26 LQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~~~ 48 (199)
..+|+.|+++||+|+.+-.....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHHH
Confidence 57899999999999999776543
No 271
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.55 E-value=1.1e+02 Score=24.41 Aligned_cols=31 Identities=10% Similarity=0.004 Sum_probs=21.0
Q ss_pred CceEEEecCCchh--H-HHHHHHhCCCcEEEecc
Q 046053 124 AVSCIISDDFMAF--T-ITAAQRLGLPSALFFTI 154 (199)
Q Consensus 124 ~~d~vI~D~~~~~--~-~~vA~~lgIP~v~~~~~ 154 (199)
+||+||....... . ..+.+.+|+|++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 7999998754433 2 33444589999888754
No 272
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=26.32 E-value=87 Score=24.63 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEE
Q 046053 102 VLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSAL 150 (199)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~ 150 (199)
...+...++++.+++ ....+||+..+..++..+++++|+..+.
T Consensus 68 ~l~pga~ell~~lk~------~~~~~IVS~~~~~~~~~il~~lgi~~~~ 110 (203)
T TIGR02137 68 KPLEGAVEFVDWLRE------RFQVVILSDTFYEFSQPLMRQLGFPTLL 110 (203)
T ss_pred CCCccHHHHHHHHHh------CCeEEEEeCChHHHHHHHHHHcCCchhh
Confidence 345777888888765 2368999999998999999999998543
No 273
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.30 E-value=1.4e+02 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=23.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+||+++--...|+ .|++.|.++|+ |++-++.+...
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~ 35 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGG 35 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhH
Confidence 3566666655554 68999999998 66555544443
No 274
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=26.20 E-value=40 Score=27.25 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=26.5
Q ss_pred Cce-EEEecCC-chhHHHHHHHhCCCcEEEecchhHHH
Q 046053 124 AVS-CIISDDF-MAFTITAAQRLGLPSALFFTISACSF 159 (199)
Q Consensus 124 ~~d-~vI~D~~-~~~~~~vA~~lgIP~v~~~~~~a~~~ 159 (199)
.|| +||.|.. -..+.--|.++|||.+.+.-+.+-..
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~ 192 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPD 192 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCCc
Confidence 577 5556764 33578899999999999987765433
No 275
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.15 E-value=1.1e+02 Score=24.61 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=28.2
Q ss_pred EcCCCcccH-HHHHHHHHHhhhc--CcEEEEEeCCchhh
Q 046053 14 IPSPFQSHI-KAMLQSAKLLHHK--GFHITCVNTEFNHR 49 (199)
Q Consensus 14 vp~p~~GH~-~P~l~La~~La~~--G~~VT~~t~~~~~~ 49 (199)
+-..|.|+. .=.++|.++|.++ |++|.++.|+.-.+
T Consensus 4 ~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 4 WGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred EEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 444566666 4689999999999 99999999986544
No 276
>PRK14098 glycogen synthase; Provisional
Probab=26.08 E-value=65 Score=29.03 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=29.5
Q ss_pred cceEEEEcC-----CC-cccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 8 KVHAVCIPS-----PF-QSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 8 ~~hvv~vp~-----p~-~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.++|++++. .= -|--.-+-.|.|+|+++||+|.++.+-
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 377887754 22 255577889999999999999999983
No 277
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.93 E-value=1.4e+02 Score=22.32 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=27.8
Q ss_pred cCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 15 PSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 15 p~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
.-.|.|=..-...||+.|+++|.+|-++-.....
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCccc
Confidence 3367788889999999999999999999886544
No 278
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=25.90 E-value=1.5e+02 Score=21.49 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=23.7
Q ss_pred EEEcCCCcccHH--HHHHHHHHhhhcCcE-EEEEeCCc
Q 046053 12 VCIPSPFQSHIK--AMLQSAKLLHHKGFH-ITCVNTEF 46 (199)
Q Consensus 12 v~vp~p~~GH~~--P~l~La~~La~~G~~-VT~~t~~~ 46 (199)
+++..+-.|+-. -.+++|+.++.+||+ ++++-...
T Consensus 5 iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~D 42 (128)
T PRK00207 5 IAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQD 42 (128)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehH
Confidence 344444455554 478899999999998 46665443
No 279
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=25.86 E-value=68 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCceEEEecCCchh--HHHHHHHhCCCcEEEecch
Q 046053 123 PAVSCIISDDFMAF--TITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 123 ~~~d~vI~D~~~~~--~~~vA~~lgIP~v~~~~~~ 155 (199)
.-+|+||+|..|.. ...+|+++|.+.+.+.+--
T Consensus 264 G~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~ 298 (731)
T cd01916 264 GIADVVVVDEQCIRADILEEAQKLGIPVIATNDKI 298 (731)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEechhh
Confidence 47999999997765 5999999999999877643
No 280
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.84 E-value=1.2e+02 Score=26.71 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=24.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
.+|+++ |.|+ .- +.+|+.|+++|++||++....
T Consensus 6 k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 445555 5666 33 499999999999999987653
No 281
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=25.76 E-value=67 Score=25.81 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHHHHHhhhcCcEEEEEe
Q 046053 26 LQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t 43 (199)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 567999999999999875
No 282
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=25.75 E-value=35 Score=22.32 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=16.4
Q ss_pred HHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 26 LQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
-+|+..|..+|+.||=.|-......+
T Consensus 23 ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp HHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 36899999999998877655444433
No 283
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=25.62 E-value=1.9e+02 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=32.9
Q ss_pred CcceEEEEcC-CCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 7 YKVHAVCIPS-PFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 7 ~~~hvv~vp~-p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
..+-|+++|- ++-+|--=+++|+.+++++|+++.+++.-.
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 4577888876 667888779999999999999999997644
No 284
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=25.50 E-value=1.6e+02 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=21.9
Q ss_pred CceEEEe--cCCchh-HHHHHHHhCCCcEEEecc
Q 046053 124 AVSCIIS--DDFMAF-TITAAQRLGLPSALFFTI 154 (199)
Q Consensus 124 ~~d~vI~--D~~~~~-~~~vA~~lgIP~v~~~~~ 154 (199)
+||+||+ |.+... +..+|..+|||++.+.-.
T Consensus 93 ~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 93 KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 6786665 454443 577889999999965544
No 285
>PF15013 CCSMST1: CCSMST1 family
Probab=25.27 E-value=61 Score=21.70 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=22.8
Q ss_pred CCcEEEecchhHHHHHHHhHHHHHHcCCC
Q 046053 146 LPSALFFTISACSFKGLKQFQTLKEKGLF 174 (199)
Q Consensus 146 IP~v~~~~~~a~~~~~~~~~~~l~~~~~~ 174 (199)
+||+-..+.+++..++.+++=-|+++.-+
T Consensus 28 ~PWyq~~~is~sl~~fliyFC~lReEnDi 56 (77)
T PF15013_consen 28 MPWYQVYPISLSLAAFLIYFCFLREENDI 56 (77)
T ss_pred CcceeeehhHHHHHHHHHHHhhccccccH
Confidence 79999999999988888887556665433
No 286
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=25.15 E-value=80 Score=25.55 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=23.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
=+++|..|.||= +..|+++||+|+-+=-..
T Consensus 46 rvLvPgCGkg~D------~~~LA~~G~~V~GvDlS~ 75 (226)
T PRK13256 46 VCLIPMCGCSID------MLFFLSKGVKVIGIELSE 75 (226)
T ss_pred eEEEeCCCChHH------HHHHHhCCCcEEEEecCH
Confidence 468999999986 677889999988765433
No 287
>PRK08939 primosomal protein DnaI; Reviewed
Probab=25.12 E-value=1.3e+02 Score=25.33 Aligned_cols=46 Identities=13% Similarity=-0.133 Sum_probs=38.3
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
...+++.--+|.|=..=+..+|++|+.+|..|+|++.+.....+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 3568888889999988899999999999999999998876555543
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=25.11 E-value=1.9e+02 Score=24.92 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=35.3
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
...|+++-.+|.|=..-+..||..|..+|++|.++++....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 35677888899999999999999999999999998877543
No 289
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.08 E-value=95 Score=25.28 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcC--cEEEEEeCCchhhh
Q 046053 22 IKAMLQSAKLLHHKG--FHITCVNTEFNHRC 50 (199)
Q Consensus 22 ~~P~l~La~~La~~G--~~VT~~t~~~~~~~ 50 (199)
+.|+.++++++.++| .+|+++........
T Consensus 119 ~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~d 149 (252)
T COG0543 119 IAPLYAIAKELKEKGDANKVTLLYGARTAKD 149 (252)
T ss_pred HhHHHHHHHHHHhcCCCceEEEEEeccChhh
Confidence 579999999999999 99999987665543
No 290
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=25.04 E-value=3.3e+02 Score=21.15 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=25.9
Q ss_pred cCCCcccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 15 PSPFQSHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 15 p~p~~GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
+-++.|-..-.+.|++.|.++|.+|-++-+
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 446779999999999999999999988763
No 291
>PRK05802 hypothetical protein; Provisional
Probab=24.94 E-value=93 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=27.9
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
+++++. .|.| +.|++.++++|.++|.+|+++-.....+
T Consensus 174 ~~llIa-GGiG-IaPl~~l~~~l~~~~~~v~li~g~r~~~ 211 (320)
T PRK05802 174 KSLVIA-RGIG-QAPGVPVIKKLYSNGNKIIVIIDKGPFK 211 (320)
T ss_pred eEEEEE-eEEe-HHHHHHHHHHHHHcCCcEEEEEeCCCHH
Confidence 455554 2333 7999999999999998999887655543
No 292
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.92 E-value=97 Score=23.75 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=23.2
Q ss_pred CCcccHHHHHHHHHHhhhcCcEEEEEeCCc-hhhhhh
Q 046053 17 PFQSHIKAMLQSAKLLHHKGFHITCVNTEF-NHRCFL 52 (199)
Q Consensus 17 p~~GH~~P~l~La~~La~~G~~VT~~t~~~-~~~~~~ 52 (199)
.+-|.+.| |+.+|.++|.+|+++..+. ....+.
T Consensus 113 SgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~ 146 (160)
T TIGR00288 113 TRDADFLP---VINKAKENGKETIVIGAEPGFSTALQ 146 (160)
T ss_pred eccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHH
Confidence 35666665 5777888899999999765 333443
No 293
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.84 E-value=69 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=20.6
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
...+|+-...|= --..|++||+||++|.++.=
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRGFNVVLISR 81 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcCCEEEEEeC
Confidence 444555443331 13679999999999777753
No 294
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=24.75 E-value=1.7e+02 Score=22.95 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=19.7
Q ss_pred CCceEEEec----CCchhHHHHHHHh-----CCCcEEEecc
Q 046053 123 PAVSCIISD----DFMAFTITAAQRL-----GLPSALFFTI 154 (199)
Q Consensus 123 ~~~d~vI~D----~~~~~~~~vA~~l-----gIP~v~~~~~ 154 (199)
.+|||||.| .-...+.++.+++ +++.++|...
T Consensus 46 ~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 46 LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 468999999 3233344555543 4667777554
No 295
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=24.70 E-value=1.6e+02 Score=22.84 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=22.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEE
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITC 41 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~ 41 (199)
.+-|+++ .-..|-..-+..+|++|+++|+.|.+
T Consensus 14 ~~~Vvv~-~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 14 RPAVVVI-HDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEEE-cCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 4545555 46778888888999999999976654
No 296
>PRK04148 hypothetical protein; Provisional
Probab=24.63 E-value=75 Score=23.57 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
.+|+.+-.. +| ..+|+.|++.|++|+.+=....
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 567666655 44 3458899999999998865544
No 297
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.50 E-value=1.4e+02 Score=26.42 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEE-ecchhHHHHHHH
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALF-FTISACSFKGLK 163 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~-~~~~a~~~~~~~ 163 (199)
....+++.+.....+..+.+++|+|++.+ .+.+...+.-++
T Consensus 224 A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~~~T~~~L 265 (417)
T cd01966 224 SAATLAIGESMRKAAEALEERTGVPYYVFPSLTGLEAVDALI 265 (417)
T ss_pred CeEEEEECHHHHHHHHHHHHHHCCCeeecCCCcchHHHHHHH
Confidence 36777776665556788899999999987 556555544443
No 298
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.35 E-value=1.8e+02 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEec
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFT 153 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~ 153 (199)
..++++++..... .....+.+||+|- ..+..+|+++|||++.+..
T Consensus 101 snl~al~~~~~~~--~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 101 HCLGDLLWRWRSG--ELPVEIAAVISNH--DDLRSLVERFGIPFHHVPV 145 (286)
T ss_pred CCHHHHHHHHHcC--CCCcEEEEEEEcC--hhHHHHHHHhCCCEEEecc
Confidence 4677888765431 0014688999985 3455679999999998654
No 299
>PRK13604 luxD acyl transferase; Provisional
Probab=24.10 E-value=1.9e+02 Score=24.61 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=23.5
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEE
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCV 42 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~ 42 (199)
..+++.-...++-.-+.++|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344444444455556999999999999987665
No 300
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.08 E-value=1.6e+02 Score=18.66 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.1
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.|+++++. ..+..-.+++++.|...|..|-+....
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 46666654 567888999999999999988775543
No 301
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.06 E-value=1.8e+02 Score=23.66 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCchh--HH---HHHHHhCCCcEEE
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMAF--TI---TAAQRLGLPSALF 151 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~---~vA~~lgIP~v~~ 151 (199)
..+.++.+.+++ .++.||+++..... +. .+|++.|+|.+.+
T Consensus 193 ~~l~~l~~~ik~------~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 193 ADIAAFQNAIKN------RQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHHHh------CCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 356667666655 47899999987664 23 5689999999776
No 302
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.03 E-value=38 Score=22.39 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhcCcEEEEEeC
Q 046053 23 KAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~t~ 44 (199)
+=||.|..++.++|.+|+|+.-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4589999999999999998743
No 303
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.90 E-value=1.1e+02 Score=22.34 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCc-EEEEEeC
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGF-HITCVNT 44 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~~t~ 44 (199)
+..++++.++.-..+|.-=+-.++++|.++|. ++.++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 35788999999999999999999999999886 5666654
No 304
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=23.89 E-value=2.4e+02 Score=22.28 Aligned_cols=42 Identities=10% Similarity=-0.048 Sum_probs=35.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
-+++.--|+.|-..-..+++...+.+|..|.|++++...+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 356667799999999999998888899999999998776544
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.85 E-value=2.1e+02 Score=25.50 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=34.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhh-hcCcEEEEEeCCchhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLH-HKGFHITCVNTEFNHR 49 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La-~~G~~VT~~t~~~~~~ 49 (199)
.-++++..+|.|=..-...||..|. .+|.+|.++....+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3566777899999999999999997 5799999999986654
No 306
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=23.83 E-value=78 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.9
Q ss_pred HHHHHHhhhcCcEEEEEeCC
Q 046053 26 LQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~ 45 (199)
..+|++|+++||+|+++...
T Consensus 14 ~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp HHHHHHHHHTTTEEEEEESS
T ss_pred HHHHHHHHhcCCeEEeeccc
Confidence 46799999999999998744
No 307
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.80 E-value=1.7e+02 Score=20.58 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=24.0
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~ 44 (199)
...|+++.+... +...++.++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 345666666554 35568888888888888887654
No 308
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.52 E-value=1.2e+02 Score=24.73 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=21.8
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
+|.++-. |.+- ..+|..|++.||+|+++...
T Consensus 2 ~I~IiG~---G~~G--~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGA---GAIG--GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 4445543 4333 45788999999999999873
No 309
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=23.49 E-value=1.7e+02 Score=24.18 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=33.1
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhc-C-cEEEEEeCCchh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHK-G-FHITCVNTEFNH 48 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~-G-~~VT~~t~~~~~ 48 (199)
.|+++-..|.|=..-...||..++.+ | ++|.+++++.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56666678889999999999999987 5 999999998754
No 310
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.49 E-value=1.9e+02 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCceEEEecCCchh----------HHHHHHHhCCCcEEEe
Q 046053 123 PAVSCIISDDFMAF----------TITAAQRLGLPSALFF 152 (199)
Q Consensus 123 ~~~d~vI~D~~~~~----------~~~vA~~lgIP~v~~~ 152 (199)
-+||++|+-..+.. +..|.+++|||.+.-.
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 37999999875543 2446779999999743
No 311
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=23.44 E-value=1e+02 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.047 Sum_probs=23.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
=+++|..|.|+- +..||++|++||-+=....
T Consensus 40 rvL~~gCG~G~d------a~~LA~~G~~V~avD~s~~ 70 (218)
T PRK13255 40 RVLVPLCGKSLD------MLWLAEQGHEVLGVELSEL 70 (218)
T ss_pred eEEEeCCCChHh------HHHHHhCCCeEEEEccCHH
Confidence 457888999975 6777899999988755443
No 312
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.31 E-value=89 Score=21.68 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=26.4
Q ss_pred CcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEE
Q 046053 7 YKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITC 41 (199)
Q Consensus 7 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~ 41 (199)
.++.++.+......+...+.++++.+.+++-++.+
T Consensus 50 ~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~i 84 (121)
T PF02310_consen 50 ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPI 84 (121)
T ss_dssp TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEE
T ss_pred CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEE
Confidence 46788888888888888889999887777544333
No 313
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=23.30 E-value=65 Score=29.28 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCcEEEEEeCCchhh
Q 046053 26 LQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
|.=|++|+++||+||++=+.....
T Consensus 13 L~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 13 LAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred HHHHHHHHhCCCceEEEeccCccC
Confidence 556899999999999998766543
No 314
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=23.05 E-value=2e+02 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=30.6
Q ss_pred CCceEEEecCCch-----h--HHHHHHHhCCCcEEEecchhHHHHHHHhHHHH
Q 046053 123 PAVSCIISDDFMA-----F--TITAAQRLGLPSALFFTISACSFKGLKQFQTL 168 (199)
Q Consensus 123 ~~~d~vI~D~~~~-----~--~~~vA~~lgIP~v~~~~~~a~~~~~~~~~~~l 168 (199)
..+|++..|.... + ...+|+.+|+++..=...+...+++..|+-..
T Consensus 17 ~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hlaaa 69 (111)
T PF13378_consen 17 GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHLAAA 69 (111)
T ss_dssp TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHHHHT
T ss_pred CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHHHHh
Confidence 3589999995332 1 36788999999887665666666666666443
No 315
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.98 E-value=1.5e+02 Score=20.74 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=29.3
Q ss_pred EEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 13 CIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 13 ~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
++-+.-.|..--+++.++.+.++|..|..+|.....+
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 3444566777889999999999999999998876553
No 316
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=22.83 E-value=1.5e+02 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.018 Sum_probs=31.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
+++..-+|.|-..-...+|..++++|.+|-++.+...+
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 34444588899999999999999999999999887643
No 317
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=22.78 E-value=1.3e+02 Score=21.80 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEecCCch--hHHHHHHHhCCCcEEEec
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIISDDFMA--FTITAAQRLGLPSALFFT 153 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgIP~v~~~~ 153 (199)
+..++.++++-+. ..|.+||++-+.. +...+|++.|+|....--
T Consensus 68 ~~r~~~l~~l~~~-----~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 68 EERKERLEKLFSY-----NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHCCHHHHHCTT-----T-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHHHhCC-----CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3444555665432 5789999998654 579999999999876544
No 318
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=22.73 E-value=1.1e+02 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 21 HIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 21 H~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
|+.-|-+++.+|.++|++|++...+.
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 46789999999999999999999877
No 319
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.62 E-value=1.4e+02 Score=26.54 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=28.7
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEE-ecchhHHHHHH
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALF-FTISACSFKGL 162 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~-~~~~a~~~~~~ 162 (199)
....+++.+.....+..+.+++|||++.+ .+.+...+..+
T Consensus 235 A~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~~~t~~~ 275 (432)
T TIGR01285 235 SCCTLAIGESMRRAASLLADRCGVPYIVFPSLMGLEAVDAF 275 (432)
T ss_pred CcEEEEEChhHHHHHHHHHHHHCCCeEecCCCcChHHHHHH
Confidence 36777777766556788889999999987 56665554443
No 320
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=22.57 E-value=1.1e+02 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhh--cCcEEEEEeCCchh
Q 046053 22 IKAMLQSAKLLHH--KGFHITCVNTEFNH 48 (199)
Q Consensus 22 ~~P~l~La~~La~--~G~~VT~~t~~~~~ 48 (199)
+.||+.+.+.+.+ .+.+|+++-...+.
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 36 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTP 36 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEccc
Confidence 5899999999995 46889988765443
No 321
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.44 E-value=95 Score=24.95 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=19.1
Q ss_pred HHHHHHhhhcCcEEEEEeCCchh
Q 046053 26 LQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~~~~ 48 (199)
-.|+++|+..||+|++.+.....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 46799999999999999776543
No 322
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.41 E-value=1.5e+02 Score=25.40 Aligned_cols=44 Identities=9% Similarity=-0.112 Sum_probs=37.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFL 52 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~ 52 (199)
..++++--+|.|=..=+..+|++|.++|+.|.|++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 56888888899988888999999999999999999877655443
No 323
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.40 E-value=1.9e+02 Score=23.70 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=26.0
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
..+|+++-....|+ +||+.|..+|+.|++-++....
T Consensus 2 ~~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g 37 (248)
T PRK08057 2 MPRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTG 37 (248)
T ss_pred CceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCC
Confidence 35677777666665 6799999999988886665543
No 324
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=22.40 E-value=1.9e+02 Score=24.12 Aligned_cols=37 Identities=5% Similarity=-0.051 Sum_probs=30.7
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+|++.-=.|-|=..-...||..|+++|.+|-++=...
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 3666666788899999999999999999998875543
No 325
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=22.39 E-value=1e+02 Score=25.71 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
.||..+.+...+.|.+.|+++.++....
T Consensus 14 LG~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 14 LGHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 3999998889999999999999988765
No 326
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.37 E-value=1.5e+02 Score=27.04 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEe
Q 046053 106 PFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFF 152 (199)
Q Consensus 106 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~ 152 (199)
.+++.+++ .+||+||.+. |...+|+++|||.+...
T Consensus 365 ei~~~I~~---------~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIAR---------VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHh---------cCCCEEEECc---hhhHHHHHhCCCEEEee
No 327
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=22.34 E-value=2.1e+02 Score=20.71 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=24.4
Q ss_pred EEEcCCCcccHHH--HHHHHHHhhhcCcEE-EEEeCC
Q 046053 12 VCIPSPFQSHIKA--MLQSAKLLHHKGFHI-TCVNTE 45 (199)
Q Consensus 12 v~vp~p~~GH~~P--~l~La~~La~~G~~V-T~~t~~ 45 (199)
+++..+-.|+... .+++|+.++..||+| .++--.
T Consensus 4 iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 40 (127)
T TIGR03012 4 LLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFYQ 40 (127)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEeh
Confidence 4555555677655 788999999999995 665443
No 328
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=22.32 E-value=1.2e+02 Score=24.12 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=23.3
Q ss_pred Cce-EEEecCCch-hHHHHHHHhCCCcEEEecc
Q 046053 124 AVS-CIISDDFMA-FTITAAQRLGLPSALFFTI 154 (199)
Q Consensus 124 ~~d-~vI~D~~~~-~~~~vA~~lgIP~v~~~~~ 154 (199)
.|| +||.|.... -+..-|.++|||.+.+.-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 356 666777444 3788999999999998844
No 329
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=22.22 E-value=2.3e+02 Score=20.45 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=27.1
Q ss_pred EEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 13 CIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 13 ~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
.-|.++.|=..=.+.||+.|+++|.+|-++-......
T Consensus 6 ~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 6 WSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-
T ss_pred ECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 3346788888899999999999999988887765444
No 330
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=22.21 E-value=1.7e+02 Score=23.85 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
.+++.|+++.--+.+... .-.+++.|.++|++|..+--+.
T Consensus 16 ~~~p~vvliHG~~~~~~~-w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 16 RQPPHFVLIHGISGGSWC-WYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred CCCCeEEEECCCCCCcCc-HHHHHHHHHhCCCEEEEecccC
Confidence 345789999886665442 4667788988999988776543
No 331
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=22.17 E-value=2e+02 Score=19.61 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=23.7
Q ss_pred CceEEEecCCchh--HHHHHHHh-----CCCcEEEecchhHHHH
Q 046053 124 AVSCIISDDFMAF--TITAAQRL-----GLPSALFFTISACSFK 160 (199)
Q Consensus 124 ~~d~vI~D~~~~~--~~~vA~~l-----gIP~v~~~~~~a~~~~ 160 (199)
.+|+||.|..++. +..+.+++ .+| +++.+.......
T Consensus 51 ~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p-vv~~t~~~~~~~ 93 (130)
T COG0784 51 QPDLILLDINMPGMDGIELLRRLRARGPNIP-VILLTAYADEAD 93 (130)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC-EEEEEcCcCHHH
Confidence 4999999998883 45555444 478 566666555543
No 332
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.16 E-value=2.7e+02 Score=20.58 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=36.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
++|++-+.-+-+|-.=---++..|.+.|++|..+...-..+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 5788888899999999888899999999999998876655544
No 333
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=22.10 E-value=1.5e+02 Score=25.44 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCceEEEec-CCchhHHHHHHHhCCCcEEEecchhHHHHHHH
Q 046053 123 PAVSCIISD-DFMAFTITAAQRLGLPSALFFTISACSFKGLK 163 (199)
Q Consensus 123 ~~~d~vI~D-~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~ 163 (199)
....++++. ....++..+.+++|+|++.+.+.+...+.-++
T Consensus 201 A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t~~~l 242 (399)
T cd00316 201 AKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEATDAFL 242 (399)
T ss_pred CcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHHHHHH
Confidence 357778776 56667888889999999998888777666554
No 334
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.08 E-value=99 Score=23.28 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=22.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 9 VHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 9 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.+|+++-. |.+ -...++.|.+.|++||++..+
T Consensus 14 ~~vlVvGG---G~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGG---GKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECC---CHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 45555533 322 377899999999999999544
No 335
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=22.07 E-value=86 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHhhhcCcEEEEEeCC
Q 046053 26 LQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~ 45 (199)
+-.|.+|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 45688999999999999766
No 336
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.03 E-value=1.3e+02 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=19.2
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
.+++++ +-|.+.|.+ ++|.++|.+|.++..+
T Consensus 102 ~ivLvS--gD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVS--GDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEEE--CCccHHHHH---HHHHHcCCEEEEEccC
Confidence 344443 366665554 4455558888888887
No 337
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.02 E-value=1.4e+02 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHhhhcCcEEEEEeCC
Q 046053 26 LQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~~ 45 (199)
..++++|+++|++|++++-.
T Consensus 13 g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHCcCEEEEEECC
Confidence 35899999999999988643
No 338
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.96 E-value=5.2e+02 Score=22.34 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=66.4
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCchh-hhhhhhcCCCCCCCCCCeeEEEeCCCCCCCCCCCCCCCchhhHHHHHHH
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFNH-RCFLKSRGHHSLDGLPNFRFEAIPDGRDGLPASSYESSTTQDMYSLCEN 97 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~~-~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (199)
.-|+.=+-++.+.|..+||+|-+.+-+... ..+... =++.+..+... + + .... ..+...
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~---------ygf~~~~Igk~--g---~----~tl~--~Kl~~~ 69 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL---------YGFPYKSIGKH--G---G----VTLK--EKLLES 69 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH---------hCCCeEeeccc--C---C----ccHH--HHHHHH
Confidence 345555778999999999999877654422 223221 15666666531 1 0 0111 122221
Q ss_pred HHHhhhhHHHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcEEEecchhHHHHHH
Q 046053 98 IINDVLLQPFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSALFFTISACSFKGL 162 (199)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~a~~~~~~ 162 (199)
. .+. -.+.++..+ .+||+.+. -+...+.-+|--+|+|.+.|.-..-+-..-.
T Consensus 70 ~-eR~--~~L~ki~~~---------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~~qnk 121 (346)
T COG1817 70 A-ERV--YKLSKIIAE---------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAEAQNK 121 (346)
T ss_pred H-HHH--HHHHHHHhh---------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHHHHhh
Confidence 1 111 123344333 58999999 6777889999999999999988765544433
No 339
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.95 E-value=1.7e+02 Score=25.33 Aligned_cols=39 Identities=8% Similarity=0.245 Sum_probs=30.8
Q ss_pred cceEEEEcC--CCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 8 KVHAVCIPS--PFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 8 ~~hvv~vp~--p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+++|+.+.. .|.|=..-..+||..|+.+|++|-++=...
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 345554433 788999999999999999999998886654
No 340
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=21.93 E-value=84 Score=25.30 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHhhhcCcEEEEEeCC
Q 046053 25 MLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 25 ~l~La~~La~~G~~VT~~t~~ 45 (199)
+++|.+.+.++|..|.|+|.-
T Consensus 120 a~~l~~~~~~~G~~V~~iT~R 140 (229)
T PF03767_consen 120 ALELYNYARSRGVKVFFITGR 140 (229)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 889999999999999999973
No 341
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=21.91 E-value=2.9e+02 Score=23.60 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=23.7
Q ss_pred EEEcCCCcccHHHHHHHHHHhhhc-C--cEEEEE
Q 046053 12 VCIPSPFQSHIKAMLQSAKLLHHK-G--FHITCV 42 (199)
Q Consensus 12 v~vp~p~~GH~~P~l~La~~La~~-G--~~VT~~ 42 (199)
++-...|.||.--.-.|++.|.++ | .+|+++
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 455568889999999999999875 4 455554
No 342
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.86 E-value=1.8e+02 Score=24.66 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=18.5
Q ss_pred CCceEEEecCCchhHHHHH--HHhCCCcEEEec
Q 046053 123 PAVSCIISDDFMAFTITAA--QRLGLPSALFFT 153 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA--~~lgIP~v~~~~ 153 (199)
.+||+||++.-......+. ..++||.+...+
T Consensus 103 ~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 103 EKPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 4799999985333332222 345689875443
No 343
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=21.79 E-value=2.6e+02 Score=19.72 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=35.5
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~ 51 (199)
+++++--|+.|-..=+..++..++.+|..|.|+..+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 366777899999999999999999999999999988765433
No 344
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=21.71 E-value=1.6e+02 Score=23.08 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=29.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhh-cCcEEEEEeCCchhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHH-KGFHITCVNTEFNHRCF 51 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~-~G~~VT~~t~~~~~~~~ 51 (199)
+|++.-..+.| ..=..+|+++|.+ .|++|.++.|+.-.+-+
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 45444444445 4458899999999 49999999998765544
No 345
>PRK12404 stage V sporulation protein AD; Provisional
Probab=21.66 E-value=5.2e+02 Score=22.36 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=32.1
Q ss_pred CceEEEe-cCC--chhHHHHHHHhCCCcEEEecchhHHHHHHHhHHHHHHcCCC
Q 046053 124 AVSCIIS-DDF--MAFTITAAQRLGLPSALFFTISACSFKGLKQFQTLKEKGLF 174 (199)
Q Consensus 124 ~~d~vI~-D~~--~~~~~~vA~~lgIP~v~~~~~~a~~~~~~~~~~~l~~~~~~ 174 (199)
.+|.++. |.. ...+..+++++|||.+-+....+.....+.--..+++.|..
T Consensus 75 DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gACSTg~eAL~lAa~~VaSG~A 128 (334)
T PRK12404 75 DIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGACSTSMEGLALAALIVNSGGA 128 (334)
T ss_pred HCCEEEEEecCCCcCcHHHHHHHhCCCccceeecCHHHHHHHHHHHHHHHcCCC
Confidence 4787777 543 23345889999999966655544444444444456677654
No 346
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=75 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=26.7
Q ss_pred cCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 15 PSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 15 p~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
|...+.|+.-++.=+.+|.++|.+..++.+-.
T Consensus 57 PtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 57 PTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred CccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 33467899999999999999999888877753
No 347
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.57 E-value=2.3e+02 Score=25.38 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=36.0
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 8 KVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 8 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
+..|+++--.|.|=..-+..||..|..+|.+|.++++...+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35677888899999999999999999999999999997654
No 348
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=21.49 E-value=1.9e+02 Score=25.42 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=29.4
Q ss_pred EEEEcC-CCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 11 AVCIPS-PFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 11 vv~vp~-p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
|.+..+ .|.|=..-..+||..|+.+|++|-++=...
T Consensus 124 Iav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 124 IAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 444444 888999999999999999999998885544
No 349
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=21.47 E-value=1.9e+02 Score=23.48 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=28.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEe
Q 046053 11 AVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 11 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t 43 (199)
|.++-+++.|=..-+..|+++|.++|++|-++-
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455666888999999999999999999999995
No 350
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.45 E-value=2.6e+02 Score=21.65 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=31.2
Q ss_pred cceEEEEcC--CCcccHHHHHHHHHHhhh-cCcEEEEEeCCch
Q 046053 8 KVHAVCIPS--PFQSHIKAMLQSAKLLHH-KGFHITCVNTEFN 47 (199)
Q Consensus 8 ~~hvv~vp~--p~~GH~~P~l~La~~La~-~G~~VT~~t~~~~ 47 (199)
..+++.|.. .+.|=..-...||..|+. +|.+|-++=....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 455555553 788999999999999997 6999999866543
No 351
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=21.23 E-value=2e+02 Score=25.20 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=28.8
Q ss_pred ceE-EEEcC-CCcccHHHHHHHHHHhhhcCcEEEEEe
Q 046053 9 VHA-VCIPS-PFQSHIKAMLQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 9 ~hv-v~vp~-p~~GH~~P~l~La~~La~~G~~VT~~t 43 (199)
++| .+..+ .|.|=..-..+||..|+.+|++|-++=
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 344 34444 788999999999999999999998885
No 352
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=21.18 E-value=51 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=23.0
Q ss_pred ce-EEEecCCchh-HHHHHHHhCCCcEEEecc
Q 046053 125 VS-CIISDDFMAF-TITAAQRLGLPSALFFTI 154 (199)
Q Consensus 125 ~d-~vI~D~~~~~-~~~vA~~lgIP~v~~~~~ 154 (199)
|+ +||+|...-. +.--|.++|||++.+.-+
T Consensus 119 P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DT 150 (249)
T PTZ00254 119 PRLLIVTDPRTDHQAIREASYVNIPVIALCDT 150 (249)
T ss_pred CCEEEEeCCCcchHHHHHHHHhCCCEEEEecC
Confidence 45 6777875543 688899999999998744
No 353
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=21.08 E-value=1.3e+02 Score=23.86 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=23.8
Q ss_pred Cce-EEEecCCch-hHHHHHHHhCCCcEEEecch
Q 046053 124 AVS-CIISDDFMA-FTITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 124 ~~d-~vI~D~~~~-~~~~vA~~lgIP~v~~~~~~ 155 (199)
.|| +||.|.... -+.--|.++|||.+.+.-+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 356 666777544 37889999999999987643
No 354
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.08 E-value=1.2e+02 Score=27.33 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHhCCCcE
Q 046053 107 FLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRLGLPSA 149 (199)
Q Consensus 107 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~v 149 (199)
..++.+.+.. .+||++|.. ++...+|+++|||++
T Consensus 382 ~~e~~~~i~~------~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 382 PRELYKMLKE------AKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HHHHHHHHhh------cCCCEEEec---CchhhhhhhcCCCEE
No 355
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.07 E-value=1.7e+02 Score=20.38 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=26.3
Q ss_pred CCCcccHHHHHHHHHHhhhcCcEEEEEeCCchh
Q 046053 16 SPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNH 48 (199)
Q Consensus 16 ~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~ 48 (199)
....|...-+++.++.+.++|..|..+|.....
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 444566667999999999999999999887554
No 356
>PLN02778 3,5-epimerase/4-reductase
Probab=20.93 E-value=1.7e+02 Score=24.17 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=22.9
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEe
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVN 43 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t 43 (199)
..+++|++.-..|+ +- -+|+++|.++|++|++..
T Consensus 7 ~~~~kiLVtG~tGf--iG--~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 7 SATLKFLIYGKTGW--IG--GLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCeEEEECCCCH--HH--HHHHHHHHhCCCEEEEec
Confidence 45677776654444 22 256889999999998653
No 357
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.90 E-value=1.8e+02 Score=21.76 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=20.7
Q ss_pred CceEEEecCCchh-HHHHHHHhCCCcEEEecc
Q 046053 124 AVSCIISDDFMAF-TITAAQRLGLPSALFFTI 154 (199)
Q Consensus 124 ~~d~vI~D~~~~~-~~~vA~~lgIP~v~~~~~ 154 (199)
+||+||....... ..+--++.|+|++.+...
T Consensus 60 ~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 60 KPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 6899988643322 344457789998887654
No 358
>PRK07077 hypothetical protein; Provisional
Probab=20.87 E-value=83 Score=25.68 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=26.5
Q ss_pred CceEEEecCCchhHHHHHHHhCCCcEEEecch
Q 046053 124 AVSCIISDDFMAFTITAAQRLGLPSALFFTIS 155 (199)
Q Consensus 124 ~~d~vI~D~~~~~~~~vA~~lgIP~v~~~~~~ 155 (199)
.++++.+|+=......+|.++|||++++-..+
T Consensus 135 ~~gA~aVDMEsaAvA~va~~~giPf~viR~IS 166 (238)
T PRK07077 135 ATGALAVDMESHIAAAFAAARGLPFAACRVIV 166 (238)
T ss_pred hCCCEEEehhHHHHHHHHHHcCCCEEEEEEEE
Confidence 47999999755556889999999999987665
No 359
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=20.85 E-value=1.9e+02 Score=23.45 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 19 QSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 19 ~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
-|=..-|.+|+++|.++|.+|-+-||-..
T Consensus 8 gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 8 GGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 57888899999999999999999888554
No 360
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.85 E-value=2.8e+02 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCceEEEecC--CchhHHHHHHHhCCCcEEEe
Q 046053 123 PAVSCIISDD--FMAFTITAAQRLGLPSALFF 152 (199)
Q Consensus 123 ~~~d~vI~D~--~~~~~~~vA~~lgIP~v~~~ 152 (199)
.++|.||.=. -+..+..+|.++|+|.+..-
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 3588877654 44457889999999998743
No 361
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=20.84 E-value=1.8e+02 Score=24.96 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEe--cCCchh-HHHHHHHhCCCcEEEecc
Q 046053 105 QPFLDLLAKLSDSSNNVNPAVSCIIS--DDFMAF-TITAAQRLGLPSALFFTI 154 (199)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~~~~d~vI~--D~~~~~-~~~vA~~lgIP~v~~~~~ 154 (199)
..+.+++++. +||+||+ |.+... +..+|..++||.+.+...
T Consensus 57 ~~~~~~~~~~---------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 57 IELADVLERE---------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHH---------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHhc---------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 3455666653 5675554 766554 477889999998887766
No 362
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=20.80 E-value=1.7e+02 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEE-ecchhHHH
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALF-FTISACSF 159 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~-~~~~a~~~ 159 (199)
....+++.+.....+..+.+++|+|++.+ .+.+....
T Consensus 235 A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~~~t 272 (455)
T PRK14476 235 SAATIAIGESMRKAAEALEARTGVPYLVFPSLTGLEAV 272 (455)
T ss_pred CcEEEEecHHHHHHHHHHHHHhCCCeEecCCCcChHHH
Confidence 36777876655556788899999999876 44444333
No 363
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.62 E-value=1.9e+02 Score=23.12 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=24.4
Q ss_pred cceEEEEcCCCcc-cHHHHHHHHHHhhhcCcEEEEEeC
Q 046053 8 KVHAVCIPSPFQS-HIKAMLQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 8 ~~hvv~vp~p~~G-H~~P~l~La~~La~~G~~VT~~t~ 44 (199)
+-++++++-.+.| -+ -..+|++|+++|++|.+..-
T Consensus 9 ~~k~~lItGas~g~GI--G~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 9 AGKRGLVVGIANEQSI--AWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCCEEEEECCCCCCcH--HHHHHHHHHHcCCEEEEEeC
Confidence 4467788776531 22 27889999999999877643
No 364
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=20.60 E-value=96 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.3
Q ss_pred HHHHHHhhhcCcEEEEEeC
Q 046053 26 LQSAKLLHHKGFHITCVNT 44 (199)
Q Consensus 26 l~La~~La~~G~~VT~~t~ 44 (199)
+-+|..|+++|++|+++=-
T Consensus 14 l~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 14 LAAALALARAGIDVTIIER 32 (356)
T ss_dssp HHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHhcccccccchh
Confidence 5678999999999999854
No 365
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=20.56 E-value=1.7e+02 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEEe
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALFF 152 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~~ 152 (199)
.+||++|.. +-+..+|+++|||.+-+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 379999976 446779999999997744
No 366
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.55 E-value=1.7e+02 Score=22.11 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=29.0
Q ss_pred EEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhh
Q 046053 13 CIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHR 49 (199)
Q Consensus 13 ~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~ 49 (199)
++-+...|...-+++.++.+.++|..|..+|.....+
T Consensus 76 ~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 76 LIAISGSGETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 3444456777889999999999999999999876543
No 367
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=20.54 E-value=2e+02 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEecCCchhHHHHHHHh--CCCcEEEec
Q 046053 106 PFLDLLAKLSDSSNNVNPAVSCIISDDFMAFTITAAQRL--GLPSALFFT 153 (199)
Q Consensus 106 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l--gIP~v~~~~ 153 (199)
.+..+.+.+.+ .+||+||+..-......+.++. +||.+...+
T Consensus 92 ~~~~l~~~l~~------~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~t 135 (391)
T PRK13608 92 GLNKLINLLIK------EKPDLILLTFPTPVMSVLTEQFNINIPVATVMT 135 (391)
T ss_pred HHHHHHHHHHH------hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeC
No 368
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=20.47 E-value=2e+02 Score=24.22 Aligned_cols=37 Identities=3% Similarity=-0.072 Sum_probs=26.8
Q ss_pred eEEEEcC--CCcccH-HHHHHHHHHhhhc--CcEEEEEeCCc
Q 046053 10 HAVCIPS--PFQSHI-KAMLQSAKLLHHK--GFHITCVNTEF 46 (199)
Q Consensus 10 hvv~vp~--p~~GH~-~P~l~La~~La~~--G~~VT~~t~~~ 46 (199)
+|+++.. +..|=+ .-++.|+++|.++ |++|++++...
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 5555543 333334 7789999999999 89999988754
No 369
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=20.41 E-value=2.2e+02 Score=25.64 Aligned_cols=44 Identities=5% Similarity=-0.145 Sum_probs=38.1
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCchhhhhhh
Q 046053 10 HAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFNHRCFLK 53 (199)
Q Consensus 10 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~~~~~~~ 53 (199)
-+++.--|+.|=..=.++++...+.+|.++.|++.+...+.+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 46677779999999999999999999999999999888766543
No 370
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=20.39 E-value=2.1e+02 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.4
Q ss_pred CCceEEEecCCchh--HHHHHHHhC---CCcEEEecchh
Q 046053 123 PAVSCIISDDFMAF--TITAAQRLG---LPSALFFTISA 156 (199)
Q Consensus 123 ~~~d~vI~D~~~~~--~~~vA~~lg---IP~v~~~~~~a 156 (199)
.++|+++.|..++. +.++++++. .|.++|.+...
T Consensus 46 ~~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~vt~~~ 84 (238)
T PRK11697 46 LKPDVVFLDIQMPRISGLELVGMLDPEHMPYIVFVTAFD 84 (238)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEEEeccH
Confidence 36899999986653 567777664 45666766543
No 371
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.26 E-value=1.8e+02 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.2
Q ss_pred CCceEEEecCCchhHHHHHHHhCCCcEEE
Q 046053 123 PAVSCIISDDFMAFTITAAQRLGLPSALF 151 (199)
Q Consensus 123 ~~~d~vI~D~~~~~~~~vA~~lgIP~v~~ 151 (199)
.+||+||.+. +...+|+++|||.+..
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 3689999886 5677899999999855
No 372
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.23 E-value=1.8e+02 Score=25.67 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=28.5
Q ss_pred CCceEEEe---cCCchhHHHHHHHhCCCcEEE-ecchhHHHHHHH
Q 046053 123 PAVSCIIS---DDFMAFTITAAQRLGLPSALF-FTISACSFKGLK 163 (199)
Q Consensus 123 ~~~d~vI~---D~~~~~~~~vA~~lgIP~v~~-~~~~a~~~~~~~ 163 (199)
....+++. +.....+..+-+++|||++.+ .+.+...+.-++
T Consensus 221 A~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~~P~G~~~t~~~l 265 (429)
T cd03466 221 AKATIELGMFVDHGLSAGSYLEEEFGIPNYRLPLPIGLRATDEFM 265 (429)
T ss_pred CcEEEEEccCccchHHHHHHHHHHHCCCeeecCCCcChHHHHHHH
Confidence 36778887 455667888999999998775 546655444443
No 373
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=20.18 E-value=1.4e+02 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=25.4
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCch
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEFN 47 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~~ 47 (199)
..+.|||++-.. .++ +..++.|...+++||++.....
T Consensus 8 ~~~~~vVIvGgG-~aG----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTG-WAG----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCC-HHH----HHHHHHhCcCCCeEEEEcCCCC
Confidence 346788877544 333 3467888777899999986544
No 374
>PRK13236 nitrogenase reductase; Reviewed
Probab=20.18 E-value=2.4e+02 Score=23.43 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=28.8
Q ss_pred ceEEEE-cCCCcccHHHHHHHHHHhhhcCcEEEEEeCC
Q 046053 9 VHAVCI-PSPFQSHIKAMLQSAKLLHHKGFHITCVNTE 45 (199)
Q Consensus 9 ~hvv~v-p~p~~GH~~P~l~La~~La~~G~~VT~~t~~ 45 (199)
++++.| -=.|-|=.+-...||..|+++|.+|-++=..
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 355555 2256688899999999999999999998543
No 375
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=20.16 E-value=4.1e+02 Score=22.29 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=37.7
Q ss_pred CceEEEecCCchh-------HHHHHHHhCCCcEEEecchhHHHHHHHh-H--HHHHHcCCCCCCC
Q 046053 124 AVSCIISDDFMAF-------TITAAQRLGLPSALFFTISACSFKGLKQ-F--QTLKEKGLFPLKD 178 (199)
Q Consensus 124 ~~d~vI~D~~~~~-------~~~vA~~lgIP~v~~~~~~a~~~~~~~~-~--~~l~~~~~~~~~~ 178 (199)
.--++|+|.-++. ....|++.||+++.+--.+|...+.+.. + .+..-.|++|.+.
T Consensus 78 ~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~ 142 (275)
T COG0313 78 KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKS 142 (275)
T ss_pred CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCc
Confidence 4678999986664 2556788999999998888888877642 1 1233446666444
No 376
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.11 E-value=1.3e+02 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=26.5
Q ss_pred CceEEEecCCch-hHHHHHHHhCCCcEE-EecchhHHHHHH
Q 046053 124 AVSCIISDDFMA-FTITAAQRLGLPSAL-FFTISACSFKGL 162 (199)
Q Consensus 124 ~~d~vI~D~~~~-~~~~vA~~lgIP~v~-~~~~~a~~~~~~ 162 (199)
...+++...... ++..+.+++|+|++. -.+.+...+.-+
T Consensus 194 ~lniv~~~~~~~~~a~~L~e~~giP~~~~~~p~G~~~t~~~ 234 (398)
T PF00148_consen 194 ALNIVLCPEGGPYAAEWLEERFGIPYLYFPSPYGIEGTDAW 234 (398)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHT-EEEEEC-SBSHHHHHHH
T ss_pred cEEEEeccchhhHHHHHHHHHhCCCeeeccccccHHHHHHH
Confidence 567777776565 889999999999999 555555444443
No 377
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.08 E-value=1.5e+02 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.1
Q ss_pred EEEcCCCcccHHHHHHHHHHhhhc-CcEEEE
Q 046053 12 VCIPSPFQSHIKAMLQSAKLLHHK-GFHITC 41 (199)
Q Consensus 12 v~vp~p~~GH~~P~l~La~~La~~-G~~VT~ 41 (199)
+..+.=...|.+-.++||..|.+. |++|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 344555668999999999999999 999986
No 378
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.05 E-value=1.5e+02 Score=23.56 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=35.3
Q ss_pred CCcceEEEEcCCCcccHHHHHHHHHHhhhcCcEEEEEeCCc
Q 046053 6 HYKVHAVCIPSPFQSHIKAMLQSAKLLHHKGFHITCVNTEF 46 (199)
Q Consensus 6 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~~t~~~ 46 (199)
+.+++++.+.+....|..-+.++.++|.+.|.++.++....
T Consensus 137 ~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 137 EHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred HcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 45789999999999999999999999999988887766543
Done!