BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046055
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 178/570 (31%), Positives = 249/570 (43%), Gaps = 85/570 (14%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
+L+ L+ISGN F + + TEL++L+ +N F GP+P + LK+L++LS N
Sbjct: 221 ALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 277
Query: 75 FSGEIPESYS-EIQSLEYLGLNGIGLNGTAPVFL-----------------------SLL 110
F+GEIP+ S +L L L+G G P F +LL
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 111 KNLREMYIG--YFNTYTGGIPPEFGTLS-KLRVLDMASCNISGEIPASLSQ--LKLLDAL 165
K +R + + FN ++G +P LS L LD++S N SG I +L Q L L
Sbjct: 338 K-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP 225
+LQ N TG I P LS L L LS N L+G +P S +L L ++L+ N L G P
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 226 SFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
+ LE L + N+ TGE+P L L + +S+N++ G+IP+ + + E L L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 286 ILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-------------------- 325
L N FSG IP ELG C SL N NGTIPA +F
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 326 NLPLLKMIELDHNLL--SGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383
N + K NLL G E L+ + N + G P+ N ++ L +
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 384 QNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPKA 443
N +G +P+E+ ++ G IP + L +D S N L G IP+A
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 444 ISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA 503
+S L L+ ++LS N L+GPI P G F F A F
Sbjct: 697 MSALTMLTEIDLSNNNLSGPI------------------------PEMGQFETFPPAKFL 732
Query: 504 GNPNLC---LPRNVTCLPSIYSAQHSHASS 530
NP LC LPR C PS H S
Sbjct: 733 NNPGLCGYPLPR---CDPSNADGYAHHQRS 759
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 236/484 (48%), Gaps = 62/484 (12%)
Query: 16 LKVLNISGNGFQDYFPGQIVVGM--TELEVLDAFNNNFTGPLPVEIV---SLKNLKHLSF 70
LK LN+S N FPG++ G+ LEVLD N+ +G V V LKHL+
Sbjct: 125 LKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 182
Query: 71 GGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPP 130
GN SG++ S +LE+L ++ N ++ GIP
Sbjct: 183 SGNKISGDV--DVSRCVNLEFLDVSS-------------------------NNFSTGIP- 214
Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
G S L+ LD++ +SG+ ++S L L + N+ G I P L SL L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 272
Query: 191 LSLNCLTGEVPESFS-ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
L+ N TGE+P+ S A L+ + L N+ G P F G LE L + NNF+GELP
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 250 -ENLGRNRKLLLLDVSSNQIEGKIPRDLCK-GERLKSLILMQNLFSGPIPEELGACESLT 307
+ L + R L +LD+S N+ G++P L L +L L N FSGPI L C++
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQN-- 388
Query: 308 KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK 367
KN L + + L +N +G+IP LS L L +++N ++G
Sbjct: 389 ----PKNTL--------------QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLT 427
IP S+G+L+ L L L N GE+P+E+ +K GEIP+ +S C +L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
+ S N L+GEIPK I +L +L+IL LS N +G IP ++ D SL LDL+ N NG
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 488 VPSG 491
+P+
Sbjct: 551 IPAA 554
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 221/469 (47%), Gaps = 51/469 (10%)
Query: 12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFG 71
P SL+ L+++ N F P + L LD N+F G +P S L+ L+
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 72 GNYFSGEIP-ESYSEIQSLEYLGLNGIGLNG-----------------------TAPVFL 107
N FSGE+P ++ +++ L+ L L+ +G + P+
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 108 SLLKN----LREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD 163
+L +N L+E+Y+ N +TG IPP S+L L ++ +SG IP+SL L L
Sbjct: 384 NLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 164 ALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGP 223
L L +N L G I EL + +L L L N LTGE+P S NL+ + L N L G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 224 FPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLK 283
P ++G NL +L++ N+F+G +P LG R L+ LD+++N G IP + K +
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----Q 558
Query: 284 SLILMQNLFSGP---------IPEELGACESLTKFRAMKN-QLNGTIPAGIFNLPLLKMI 333
S + N +G + +E +L +F+ +++ QLN L
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN--------RLSTRNPC 610
Query: 334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELP 393
+ + G + S+ L ++YN ++G IP IG++ L +L+L +N +G +P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 394 EEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPK 442
+E+ +L+ G IP ++S LT +D S N+LSG IP+
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 415 EIPTSISG---CISLTTVDFSRNSLSGEIP--KAISQLRDLSILNLSRNQLT--GPIPTD 467
I S+SG SLT++D SRNSLSG + ++ L LN+S N L G +
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 144
Query: 468 MQDMMSLTTLDLSYNNLNG 486
++ + SL LDLS N+++G
Sbjct: 145 LK-LNSLEVLDLSANSISG 162
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 415 EIPTSISGCI---SLTTVDFSRNSLSGE------IPKAISQLRDLSILNLSRNQLTGPIP 465
+ P +SG + SL +D S NS+SG + +L+ L+I S N+++G +
Sbjct: 136 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV- 191
Query: 466 TDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGN 505
D+ ++L LD+S NN + +P G A +GN
Sbjct: 192 -DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 230
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 176/559 (31%), Positives = 247/559 (44%), Gaps = 85/559 (15%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
+L+ L+ISGN F + + TEL++L+ +N F GP+P + LK+L++LS N
Sbjct: 224 ALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 75 FSGEIPESYS-EIQSLEYLGLNGIGLNGTAPVFL-----------------------SLL 110
F+GEIP+ S +L L L+G G P F +LL
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 111 KNLREMYIG--YFNTYTGGIPPEFGTLS-KLRVLDMASCNISGEIPASLSQ--LKLLDAL 165
K +R + + FN ++G +P LS L LD++S N SG I +L Q L L
Sbjct: 341 K-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP 225
+LQ N TG I P LS L L LS N L+G +P S +L L ++L+ N L G P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 226 SFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
+ LE L + N+ TGE+P L L + +S+N++ G+IP+ + + E L L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 286 ILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-------------------- 325
L N FSG IP ELG C SL N NGTIPA +F
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 326 NLPLLKMIELDHNLL--SGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383
N + K NLL G E L+ + N + G P+ N ++ L +
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 384 QNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPKA 443
N +G +P+E+ ++ G IP + L +D S N L G IP+A
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 444 ISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA 503
+S L L+ ++LS N L+GPI P G F F A F
Sbjct: 700 MSALTMLTEIDLSNNNLSGPI------------------------PEMGQFETFPPAKFL 735
Query: 504 GNPNLC---LPRNVTCLPS 519
NP LC LPR C PS
Sbjct: 736 NNPGLCGYPLPR---CDPS 751
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 236/484 (48%), Gaps = 62/484 (12%)
Query: 16 LKVLNISGNGFQDYFPGQIVVGM--TELEVLDAFNNNFTGPLPVEIV---SLKNLKHLSF 70
LK LN+S N FPG++ G+ LEVLD N+ +G V V LKHL+
Sbjct: 128 LKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 71 GGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPP 130
GN SG++ S +LE+L ++ N ++ GIP
Sbjct: 186 SGNKISGDV--DVSRCVNLEFLDVSS-------------------------NNFSTGIP- 217
Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
G S L+ LD++ +SG+ ++S L L + N+ G I P L SL L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275
Query: 191 LSLNCLTGEVPESFS-ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
L+ N TGE+P+ S A L+ + L N+ G P F G LE L + NNF+GELP
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 250 -ENLGRNRKLLLLDVSSNQIEGKIPRDLCK-GERLKSLILMQNLFSGPIPEELGACESLT 307
+ L + R L +LD+S N+ G++P L L +L L N FSGPI L C++
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQN-- 391
Query: 308 KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK 367
KN L + + L +N +G+IP LS L L +++N ++G
Sbjct: 392 ----PKNTL--------------QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLT 427
IP S+G+L+ L L L N GE+P+E+ +K GEIP+ +S C +L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
+ S N L+GEIPK I +L +L+IL LS N +G IP ++ D SL LDL+ N NG
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 488 VPSG 491
+P+
Sbjct: 554 IPAA 557
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 221/469 (47%), Gaps = 51/469 (10%)
Query: 12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFG 71
P SL+ L+++ N F P + L LD N+F G +P S L+ L+
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 72 GNYFSGEIP-ESYSEIQSLEYLGLNGIGLNG-----------------------TAPVFL 107
N FSGE+P ++ +++ L+ L L+ +G + P+
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 108 SLLKN----LREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD 163
+L +N L+E+Y+ N +TG IPP S+L L ++ +SG IP+SL L L
Sbjct: 387 NLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 164 ALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGP 223
L L +N L G I EL + +L L L N LTGE+P S NL+ + L N L G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 224 FPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLK 283
P ++G NL +L++ N+F+G +P LG R L+ LD+++N G IP + K +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----Q 561
Query: 284 SLILMQNLFSGP---------IPEELGACESLTKFRAMKN-QLNGTIPAGIFNLPLLKMI 333
S + N +G + +E +L +F+ +++ QLN L
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN--------RLSTRNPC 613
Query: 334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELP 393
+ + G + S+ L ++YN ++G IP IG++ L +L+L +N +G +P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 394 EEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPK 442
+E+ +L+ G IP ++S LT +D S N+LSG IP+
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 159/407 (39%), Gaps = 99/407 (24%)
Query: 175 HIHPELSGL---ISLTQLDLSLNCLTGEVP--ESFSALKNLSLVQLFKNNLRGPFPSFVG 229
HI+ +SG SLT LDLS N L+G V S + L + + N L FP V
Sbjct: 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVS 145
Query: 230 DYPNLEVLQV---------------W---------------GNNFTGELPENLGRNRKLL 259
L L+V W GN +G++ ++ R L
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLE 203
Query: 260 LLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT 319
LDVSSN IP L L+ L + N SG + C L NQ G
Sbjct: 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 320 IPAGIFNLPL--LKMIELDHNLLSGEIPENLS-ISDSLNQLKVAYNNIAGKIPPSIG--- 373
IP LPL L+ + L N +GEIP+ LS D+L L ++ N+ G +PP G
Sbjct: 263 IPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 374 ----------------------NLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXX 411
+ L VL L N F+GELPE + NL
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 412 X---------------------------XGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444
G+IP ++S C L ++ S N LSG IP ++
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 445 SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
L L L L N L G IP ++ + +L TL L +N+L GE+PSG
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 415 EIPTSISGCI---SLTTVDFSRNSLSGE------IPKAISQLRDLSILNLSRNQLTGPIP 465
+ P +SG + SL +D S NS+SG + +L+ L+I S N+++G +
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV- 194
Query: 466 TDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGN 505
D+ ++L LD+S NN + +P G A +GN
Sbjct: 195 -DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 26/240 (10%)
Query: 295 PIPEELGACESLT-KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS 353
PIP L L + N L G IP I L L + + H +SG IP+ LS +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL-KXXXXXXXXXXXX 412
L L +YN ++G +PPSI +L NL ++ NR +G +P+ + K
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 413 XGEIPTSISGCISLTTVDFSRNSLSGE-------------IPKAISQL----------RD 449
G+IP + + ++L VD SRN L G+ I A + L ++
Sbjct: 187 TGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC 509
L+ L+L N++ G +P + + L +L++S+NNL GE+P GG+ FD +++A N LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 54 PLPVEIVSLKNLKHLSFGG-NYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKN 112
P+P + +L L L GG N G IP + +++ L YL + ++G P FLS +K
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 113 LREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQL-KLLDALFLQMNK 171
L + Y N +G +PP +L L + ISG IP S KL ++ + N+
Sbjct: 127 LVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 172 LTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDY 231
LTG I P + L +L +DLS N L G+ F + KN + L KN+L VG
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243
Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPR 274
NL L + N G LP+ L + + L L+VS N + G+IP+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 29/273 (10%)
Query: 77 GEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSL--LKNLREMYIGYFNTYTGGIPPEFGT 134
G + ++ ++ + L L+G+ L P+ SL L L +YIG N G IPP
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
L++L L + N+SG IP LSQ+K +L LD S N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIK------------------------TLVTLDFSYN 135
Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNL-EVLQVWGNNFTGELPENLG 253
L+G +P S S+L NL + N + G P G + L + + N TG++P
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
N L +D+S N +EG + + + L +N + + ++G ++L
Sbjct: 196 -NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253
Query: 314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPE 346
N++ GT+P G+ L L + + N L GEIP+
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 4/220 (1%)
Query: 200 VPESFSALKNLSLVQLFK-NNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKL 258
+P S + L L+ + + NNL GP P + L L + N +G +P+ L + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 259 LLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESL-TKFRAMKNQLN 317
+ LD S N + G +P + L + N SG IP+ G+ L T +N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 318 GTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTN 377
G IP NL L ++L N+L G+ + ++ +A N++A + +G N
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 378 LNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIP 417
LN L L+NNR G LP+ + LK GEIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 38 MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGI 97
+ L LD N +G LP I SL NL ++F GN SG IP+SY L
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------- 175
Query: 98 GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS 157
M I N TG IPP F L+ L +D++ + G+
Sbjct: 176 ---------------FTSMTISR-NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218
Query: 158 QLKLLDALFLQMNKLTGHIHPELSGLISLTQ----LDLSLNCLTGEVPESFSALKNLSLV 213
K + L N L + G + L++ LDL N + G +P+ + LK L +
Sbjct: 219 SDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 214 QLFKNNLRGPFP 225
+ NNL G P
Sbjct: 274 NVSFNNLCGEIP 285
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 36 VGMTE-LEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPE 81
VG+++ L LD NN G LP + LK L L+ N GEIP+
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS--FVGDYPNLEVLQVWGN 242
S T L+ + N T V + S LK L + L +N L+ F + +LE L V N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 243 NFTGE-LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELG 301
+ +L+L++SSN + G + R C ++K L L N IP+++
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIMS-IPKDVT 470
Query: 302 ACESLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
++L + NQL ++P G+F+ L L+ I L N P +S+ +N+
Sbjct: 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529
Query: 361 YNNIAGKIPP 370
N AG + P
Sbjct: 530 VRNSAGSVAP 539
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG--PIPTDMQDMMSLTTLDLSYN 482
S T ++F++N + + + S L+ L L L RN L + ++M SL TLD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 483 NLNGE 487
+LN
Sbjct: 414 SLNSH 418
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMT-ELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
S+ VLN+S N G + + +++VLD NN +P ++ L+ L+ L+ N
Sbjct: 429 SILVLNLSSN----MLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483
Query: 74 YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133
+ + SL+Y+ L+ + T P ++ L E + N ++G + G
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG----IRYLSE----WINKHSGVVRNSAG 535
Query: 134 TLSKLRVLDMASCNISGE 151
+++ D A C+ SG+
Sbjct: 536 SVAP----DSAKCSGSGK 549
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 425 SLTTVDFSRNSL-SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
SL T+D S NSL S + + + +LNLS N LTG + + + + LDL N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV--LDLHNNR 461
Query: 484 LNGEVPSGGHFPAFDEASFAGN 505
+ H A E + A N
Sbjct: 462 IMSIPKDVTHLQALQELNVASN 483
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 160/365 (43%), Gaps = 38/365 (10%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 88
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 89 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 144
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 145 SA-LSGLTSLQQLSFSSNQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 199
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 253
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLK--VAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
+ L N +S ++S SL +L+ YNN + S+ NLTN+N LS +N+
Sbjct: 308 TYLTLYFNNIS-----DISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI 361
Query: 389 NGELP 393
+ P
Sbjct: 362 SDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 160/365 (43%), Gaps = 38/365 (10%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 88
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 89 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 144
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 145 SA-LSGLTSLQQLNFSSNQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 199
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 253
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLK--VAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
+ L N +S ++S SL +L+ YNN + S+ NLTN+N LS +N+
Sbjct: 308 TYLTLYFNNIS-----DISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI 361
Query: 389 NGELP 393
+ P
Sbjct: 362 SDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 38/365 (10%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 88
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 89 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 144
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 145 SA-LSGLTSLQQLSFSSNQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 199
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 200 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 253
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAY--NNIAGKIPPSIGNLTNLNVLSLQNNRF 388
+ L N +S ++S SL +L+ + NN + S+ NLTN+N LS +N+
Sbjct: 308 TYLTLYFNNIS-----DISPVSSLTKLQRLFFSNNKVSDVS-SLANLTNINWLSAGHNQI 361
Query: 389 NGELP 393
+ P
Sbjct: 362 SDLTP 366
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 105 VFLSLLKNLREMYIGYFNTYTGGIPP-EFGTLSKLRVLDMASCNISGEIPASLSQLKLLD 163
VF SL+ NL+E+Y+G + G +P F +L++L VLD+ + ++ A +L L
Sbjct: 59 VFDSLI-NLKELYLG--SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 164 ALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKN 218
LF+ NKLT + + L LT L L N L +F L +L+ LF N
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Query: 243 NFTGELPENLGRNRKLLLLDVS-SNQIEGKI--PRDLCKGERLKSLILMQNLFSGPIPEE 299
N E + L +++KL + + IE ++ P+D ++L + + NL I
Sbjct: 183 NGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN 242
Query: 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
+ + LT+ N L +PA I NL L++++L HN L+ +P L S QLK
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG---SCFQLKY 297
Query: 360 AY--NNIAGKIPPSIGNLTNLNVLSLQNN 386
Y +N+ +P GNL NL L ++ N
Sbjct: 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 338 NLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEM- 396
NL I N+ D L +L + N++ ++P I NL+NL VL L +NR LP E+
Sbjct: 233 NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
Query: 397 --FNLK 400
F LK
Sbjct: 291 SCFQLK 296
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%)
Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
P F L +L L + C + P L L L+LQ N L L +LT
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
L L N ++ +F L +L + L +N + P D L L ++ NN +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 249 PENLGRNRKLLLLDVSSN 266
E L R L L ++ N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 74/195 (37%), Gaps = 5/195 (2%)
Query: 147 NISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEV-PESFS 205
IS AS + L L+L N L +GL L QLDLS N V P +F
Sbjct: 43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102
Query: 206 ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN-RKLLLLDVS 264
L L + L + L+ P L+ L + N LP++ R+ L L +
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLH 161
Query: 265 SNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAG 323
N+I +P +G L L+L QN + P L N L+
Sbjct: 162 GNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 324 IFNLPLLKMIELDHN 338
+ L L+ + L+ N
Sbjct: 221 LAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%)
Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
P F L +L L + C + P L L L+LQ N L L +LT
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
L L N ++ +F L +L + L +N + P D L L ++ NN +
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 249 PENLGRNRKLLLLDVSSN 266
E L R L L ++ N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 74/195 (37%), Gaps = 5/195 (2%)
Query: 147 NISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEV-PESFS 205
IS AS + L L+L N L +GL L QLDLS N V P +F
Sbjct: 42 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 101
Query: 206 ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN-RKLLLLDVS 264
L L + L + L+ P L+ L + N LP++ R+ L L +
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLH 160
Query: 265 SNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAG 323
N+I +P +G L L+L QN + P L N L+
Sbjct: 161 GNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 219
Query: 324 IFNLPLLKMIELDHN 338
+ L L+ + L+ N
Sbjct: 220 LAPLRALQYLRLNDN 234
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 122/302 (40%), Gaps = 41/302 (13%)
Query: 63 KNLKHLSFGGN---YFSGEIPESYSEIQSLEYLGLNGIGLNGTAP------VFLSL---- 109
+ LK L F N Y S E S + +L L LNG + G P VF SL
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 110 LKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM 169
+NL ++ G N+ + GT + D++ G S+ + L F +
Sbjct: 212 TQNLLVIFKGLKNSTIQSL--WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269
Query: 170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVG 229
+ T H SGL +LDL+ L+ E+P L L + L N
Sbjct: 270 SSNTFHC---FSGL---QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322
Query: 230 DYPNLEVLQVWGNNFTGELP----ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
++P+L L + GN EL ENL R+ LD+S + IE C +L++L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRE---LDLSHDDIETSD----CCNLQLRNL 375
Query: 286 ILMQNL---FSGPI---PEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHN 338
+Q+L ++ P+ E C L +L F NL LLK++ L H+
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 339 LL 340
LL
Sbjct: 436 LL 437
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 64/228 (28%)
Query: 53 GPLPVEIVSLKNLKHLSF----GGNYFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVF 106
G P + LK+LK L+F GGN FS E+ ++ SLE+L L NG+ G
Sbjct: 341 GQFPT--LKLKSLKRLTFTSNKGGNAFS-EV-----DLPSLEFLDLSRNGLSFKGCCS-- 390
Query: 107 LSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
+FGT+S L+ LD++ +G I S + F
Sbjct: 391 ----------------------QSDFGTIS-LKYLDLS---FNGVITMS--------SNF 416
Query: 167 LQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS 226
L + +L H+ + S L +++ + F +L+NL + + + R F
Sbjct: 417 LGLEQLE-HLDFQHSNLKQMSEFSV------------FLSLRNLIYLDISHTHTRVAFNG 463
Query: 227 FVGDYPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLDVSSNQIEGKIP 273
+LEVL++ GN+F LP+ R L LD+S Q+E P
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 420 ISGCISLTTVDFSRNSLSGE-IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLD 478
+G SL + + NS +P ++LR+L+ L+LS+ QL PT + SL L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 479 LSYNNL 484
+S+NN
Sbjct: 525 MSHNNF 530
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
SL+VL ++GN FQ+ F I + L LD P SL +L+ L+ N
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 75 FSGEIPESYSEIQSLEYL 92
F Y + SL+ L
Sbjct: 530 FFSLDTFPYKCLNSLQVL 547
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSIS--DSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ ++ NL S EN I +L +L VA+N I K+P NLTNL L L +
Sbjct: 126 LQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 386 NR 387
N+
Sbjct: 183 NK 184
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 25/146 (17%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F + +L+VLD++ C I + L L L L N + SGL SL +L
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-- 129
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPE 250
V + ++L+N FP +G L+ L V N +LPE
Sbjct: 130 ------VAVETNLASLEN--------------FP--IGHLKTLKELNVAHNLIQSFKLPE 167
Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDL 276
L LD+SSN+I+ DL
Sbjct: 168 YFSNLTNLEHLDLSSNKIQSIYCTDL 193
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 104/265 (39%), Gaps = 11/265 (4%)
Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
P F S+L +LD +IS P L LL L LQ N+L+ +LT+
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE 101
Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN----F 244
LDL N + F KNL + L N L G + N
Sbjct: 102 LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLG-TGVQLENLQELLLAKNKILAL 160
Query: 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELG--- 301
E E LG N L LD+SSN ++ P +L +L+L + + E+L
Sbjct: 161 RSEELEFLG-NSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWEL 219
Query: 302 ACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD--HNLLSGEIPENLSISDSLNQLKV 359
+ S+ NQL T + L + +LD +N L + S SL L +
Sbjct: 220 SNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSL 279
Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQ 384
YNNI P S L+NL LSL+
Sbjct: 280 EYNNIQRLSPRSFYGLSNLRYLSLK 304
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 139/354 (39%), Gaps = 61/354 (17%)
Query: 6 WSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNL 65
W++L++ +S L+ GNG Y P L L NN P L NL
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPS--------LRYLSLEYNNIQRLSPRSFYGLSNL 298
Query: 66 KHLSFGGNYFSGEIP---------ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREM 116
++LS + + S+ ++ LEYL ++ + T
Sbjct: 299 RYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKS------------ 346
Query: 117 YIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHI 176
NT+TG + ++ +LSK + ++ E SL+ LL L L N ++
Sbjct: 347 -----NTFTGLVSLKYLSLSKTFT---SLQTLTNETFVSLAHSPLL-TLNLTKNHISKIA 397
Query: 177 HPELSGLISLTQLDLSLNCLTGEVP-ESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLE 235
+ S L L LDL LN + ++ + + L+N+ + L N S P+L+
Sbjct: 398 NGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQ 457
Query: 236 VL---QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNL 291
L +V N P R L +LD+S+N I I DL +G E L+ L N
Sbjct: 458 RLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNN 515
Query: 292 FS---------GPIPEELGACESLTKFRAMKNQLNG--TIPAGIF-NLPLLKMI 333
+ GP+ + L+ + + NG IP G+F NL LK I
Sbjct: 516 LARLWKRANPGGPV----NFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSI 565
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 230 DYP-NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLIL 287
D P N+ VL + N P N R +L +LD N I K+ +LC+ LK L L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLLKVLNL 80
Query: 288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG 342
N S + C +LT+ M N ++ N L ++L HN LS
Sbjct: 81 QHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 61 SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVFLSLLKNLREMYI 118
SL +L+HL NY S + + SL +L L N G +F S L L+ + +
Sbjct: 72 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRV 130
Query: 119 GYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK 171
G +T+T +F L+ L L++ + ++ P SL ++ + L L M +
Sbjct: 131 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 61 SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVFLSLLKNLREMYI 118
SL +L+HL NY S + + SL +L L N G +F S L L+ + +
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRV 156
Query: 119 GYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK 171
G +T+T +F L+ L L++ + ++ P SL ++ + L L M +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 89/229 (38%), Gaps = 32/229 (13%)
Query: 43 VLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGT 102
+LD NN T + +LKNL L N S P +++ + LE L L+ L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 103 APVFLSLLKNLR-------EMYIGYFNTYTGGIPPEFGT------------------LSK 137
L+ LR ++ FN I E GT LS
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 138 LRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLT 197
+R+ D I +P SL++ L L NK+T L GL +L +L LS N ++
Sbjct: 176 IRIADTNITTIPQGLPPSLTE------LHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 198 GEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246
S + +L + L N L P + D+ ++V+ + NN +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 14/205 (6%)
Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
LDL N +T F LKNL + L N + P LE L + N EL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE---ELGACES 305
PE + + L L V N+I K+ + + G L +I+++ L + P+ E GA +
Sbjct: 116 PEKMPKT--LQELRVHENEIT-KVRKSVFNG--LNQMIVVE-LGTNPLKSSGIENGAFQG 169
Query: 306 LTKFRAMK--NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
+ K ++ + TIP G+ P L + LD N ++ +L ++L +L +++N+
Sbjct: 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 364 IAGKIPPSIGNLTNLNVLSLQNNRF 388
I+ S+ N +L L L NN+
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 5/204 (2%)
Query: 16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
L++L +S N + G G+ L L+ F+N T V L LK L N
Sbjct: 90 LEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 76 SGEIPESYSEIQSLEYLGLNGIG-LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
+++ I SL L L + L+ + L NLR + + N P
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---IPNLTP 205
Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
L KL LD++ ++S P S L L L++ +++ L SL +++L+ N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 195 CLTGEVPESFSALKNLSLVQLFKN 218
LT + F+ L +L + L N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 57 VEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVF---------- 106
+++ S K+L+HL + S + I+++E NG+ T +F
Sbjct: 79 IKVNSFKHLRHLEI--------LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130
Query: 107 -LSLLKNLREMYIGYFNTYTGGIPP-EFGTLSKLRVLDMASCN----ISGEIPASLSQLK 160
L L+E+++ N IP F + LR LD+ IS LS L+
Sbjct: 131 AFVYLSKLKELWLR--NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNL 220
L+ + ++ P L+ LI L +LDLS N L+ P SF L +L + + ++ +
Sbjct: 189 YLNLAMCNLREI-----PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 221 R 221
+
Sbjct: 244 Q 244
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 89/229 (38%), Gaps = 32/229 (13%)
Query: 43 VLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGT 102
+LD NN T + +LKNL L N S P +++ + LE L L+ L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 103 APVFLSLLKNLR-------EMYIGYFNTYTGGIPPEFGT------------------LSK 137
L+ LR ++ FN I E GT LS
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 138 LRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLT 197
+R+ D I +P SL++ L L NK+T L GL +L +L LS N ++
Sbjct: 176 IRIADTNITTIPQGLPPSLTE------LHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 198 GEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246
S + +L + L N L P + D+ ++V+ + NN +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 14/205 (6%)
Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
LDL N +T F LKNL + L N + P LE L + N EL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE---ELGACES 305
PE + + L L V N+I K+ + + G L +I+++ L + P+ E GA +
Sbjct: 116 PEKMPKT--LQELRVHENEIT-KVRKSVFNG--LNQMIVVE-LGTNPLKSSGIENGAFQG 169
Query: 306 LTKFRAMK--NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
+ K ++ + TIP G+ P L + LD N ++ +L ++L +L +++N+
Sbjct: 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 364 IAGKIPPSIGNLTNLNVLSLQNNRF 388
I+ S+ N +L L L NN+
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 41 LEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS---------LEY 91
LE L N LP I SL L+ LS E+PE + + L+
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 92 LGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE 151
L L G+ + P ++ L+NL+ + I N+ + P L KL LD+ C
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIR--NSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 152 IP------ASLSQLKLLDA-----LFLQMNKLTGHIHPELSGLISLTQL-----DLSLNC 195
P A L +L L D L L +++LT +L G ++L++L L NC
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Query: 196 L 196
+
Sbjct: 305 I 305
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 53 GPLPVEIVSLKNLKHLSF----GGNYFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVF 106
G P + LK+LK L+F GGN FS E+ ++ SLE+L L NG+ G
Sbjct: 317 GQFPT--LKLKSLKRLTFTSNKGGNAFS-EV-----DLPSLEFLDLSRNGLSFKGCCSQ- 367
Query: 107 LSLLKNLREMYIGYFNTYTGGI---PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD 163
+ + Y + G+ F L +L LD N+ S+ L L +
Sbjct: 368 ----SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRN 422
Query: 164 ALFLQMNKLTGHIHPELS------GLISLTQLDLSLNCLTGE-VPESFSALKNLSLVQLF 216
++L + H H ++ GL SL L ++ N +P+ F+ L+NL+ + L
Sbjct: 423 LIYLDI----SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
+ L P+ +L+VL + NNF
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 420 ISGCISLTTVDFSRNSLSGE-IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLD 478
+G SL + + NS +P ++LR+L+ L+LS+ QL PT + SL L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 479 LSYNNL 484
+S+NN
Sbjct: 501 MSHNNF 506
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
SL+VL ++GN FQ+ F I + L LD P SL +L+ L+ N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 75 FSGEIPESYSEIQSLEYL 92
F Y + SL+ L
Sbjct: 506 FFSLDTFPYKCLNSLQVL 523
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 25/146 (17%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F + +L+VLD++ C I + L L L L N + SGL SL +L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-- 105
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPE 250
V + ++L+N FP +G L+ L V N +LPE
Sbjct: 106 ------VAVETNLASLEN--------------FP--IGHLKTLKELNVAHNLIQSFKLPE 143
Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDL 276
L LD+SSN+I+ DL
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ ++ NL S EN I +L +L VA+N I K+P NLTNL L L +
Sbjct: 102 LQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 386 NR 387
N+
Sbjct: 159 NK 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 122/312 (39%), Gaps = 90/312 (28%)
Query: 53 GPLPVEIVSLKNLKHLSF----GGNYFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVF 106
G P + LK+LK L+F GGN FS E+ ++ SLE+L L NG+ G
Sbjct: 317 GQFPT--LKLKSLKRLTFTSNKGGNAFS-EV-----DLPSLEFLDLSRNGLSFKGCCS-- 366
Query: 107 LSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
+FGT S L+ LD++ +G I S + F
Sbjct: 367 ----------------------QSDFGTTS-LKYLDLS---FNGVITMS--------SNF 392
Query: 167 LQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS 226
L + +L H+ + S L +++ + F +L+NL + + + R F
Sbjct: 393 LGLEQLE-HLDFQHSNLKQMSEFSV------------FLSLRNLIYLDISHTHTRVAFNG 439
Query: 227 FVGDYPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
+LEVL++ GN+F LP+ R L LD+S C+ E+L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-----------CQLEQLS-- 486
Query: 286 ILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELDHNLLSGEI 344
P + SL NQL ++P GIF+ L L+ I L N
Sbjct: 487 -----------PTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 345 PENLSISDSLNQ 356
P +S LN+
Sbjct: 535 PRIDYLSRWLNK 546
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 196/511 (38%), Gaps = 90/511 (17%)
Query: 16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
L L ++GN Q G G++ L+ L A N I LK LK L+ N
Sbjct: 78 LSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 76 -SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEF-- 132
S ++PE +S + +LE+L L+ N ++ + L+ L +M + + P F
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSS---NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 133 -GTLSKLRVLDMA------SCNISGEIPASLSQL---KLLDALFLQMNKLTGHIHPELSG 182
G ++R+ + S N+ L+ L +L+ F L L G
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 183 LISLTQLDLSLNCLT---GEVPESFSALKNLSLVQLFKNNL-RGPFPSFVGDYPNLEVLQ 238
L +LT + L L ++ + F+ L N+S L + R S+ + +LE++
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQ-----IEGKIPRDLCKGERLKSLILMQNLFS 293
F ++L R L +SN+ E +P L+ L L +N S
Sbjct: 314 CKFGQFPTLKLKSLKR------LTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLS 360
Query: 294 GPIPEELGACES----LTKFRAMKNQLNG--TIPAGIFNLPLLKMIELDHNLLS--GEIP 345
G C T + + NG T+ + L L+ ++ H+ L E
Sbjct: 361 FK-----GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 346 ENLSISD------SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL 399
LS+ + S +VA+N I L++L VL + N F +E F
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSSLEVLKMAGNSF-----QENF-- 461
Query: 400 KXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459
+P + +LT +D S+ L P A + L L +LN++ NQ
Sbjct: 462 ----------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 460 LTGPIPTDMQD-MMSLTTLDLSYNNLNGEVP 489
L +P + D + SL + L N + P
Sbjct: 506 LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 13/195 (6%)
Query: 15 SLKVLNISGNGFQDYFPG---QIVVGMTELEVLD-AFNNNFTGPLPVEIVSLKNLKHLSF 70
SL+ L++S NG F G Q G T L+ LD +FN T + + L+ L+HL F
Sbjct: 348 SLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDF 403
Query: 71 GGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYF--NTYTGGI 128
+ ++ E +S SL L I T F + L + + N++
Sbjct: 404 QHSNLK-QMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 129 PPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLT 187
P+ F L L LD++ C + P + + L L L + N+L L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 188 QLDLSLNCLTGEVPE 202
++ L N P
Sbjct: 522 KIWLHTNPWDCSCPR 536
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 25/146 (17%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F + +L+VLD++ C I + L L L L N + SGL SL +L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-- 105
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPE 250
V + ++L+N FP +G L+ L V N +LPE
Sbjct: 106 ------VAVETNLASLEN--------------FP--IGHLKTLKELNVAHNLIQSFKLPE 143
Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDL 276
L LD+SSN+I+ DL
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 69/190 (36%), Gaps = 28/190 (14%)
Query: 310 RAMKNQLNGTI--PAGIFNLPLLKMIELDHNLLS--GEIPENLSISDSLNQLKVAYNNIA 365
R + NG I A L L+ ++ H+ L E LS+ + L L ++Y N
Sbjct: 374 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTK 432
Query: 366 GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCIS 425
LT+LN L + N F +F + +
Sbjct: 433 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-----------------------ANTTN 469
Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
LT +D S+ L L L +LN+S N L + + SL+TLD S+N +
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 486 GEVPSGGHFP 495
HFP
Sbjct: 530 TSKGILQHFP 539
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 69/190 (36%), Gaps = 28/190 (14%)
Query: 310 RAMKNQLNGTI--PAGIFNLPLLKMIELDHNLLS--GEIPENLSISDSLNQLKVAYNNIA 365
R + NG I A L L+ ++ H+ L E LS+ + L L ++Y N
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTK 437
Query: 366 GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCIS 425
LT+LN L + N F +F + +
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-----------------------ANTTN 474
Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
LT +D S+ L L L +LN+S N L + + SL+TLD S+N +
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 486 GEVPSGGHFP 495
HFP
Sbjct: 535 TSKGILQHFP 544
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 160/365 (43%), Gaps = 39/365 (10%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 39 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 93
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 94 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 149
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 150 SA-LSGLTSLQQLSFG-NQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 203
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 257
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLK--VAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
+ L N +S ++S SL +L+ YNN + S+ NLTN+N LS +N+
Sbjct: 312 TYLTLYFNNIS-----DISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI 365
Query: 389 NGELP 393
+ P
Sbjct: 366 SDLTP 370
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 89/238 (37%), Gaps = 14/238 (5%)
Query: 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
+L+ L + N + P + G++ L LD N L L NLK L G N
Sbjct: 80 FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 74 YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLK-----NLREMYIGYFNTYTGGI 128
++S + SLE L L L LS L LR + I Y+
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS--- 195
Query: 129 PPEFGTLSKLRVLDMASC-NISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLT 187
F L +L+VL+++ + P L L L +L + LT + + L+ L
Sbjct: 196 ---FKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLR 251
Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245
L+LS N ++ L L +QL L P L VL V GN T
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 160/365 (43%), Gaps = 39/365 (10%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 88
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 89 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 144
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 145 SA-LSGLTSLQQLNFG-NQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 198
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 199 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 252
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 253 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 306
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLK--VAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
+ L N +S ++S SL +L+ YNN + S+ NLTN+N LS +N+
Sbjct: 307 TYLTLYFNNIS-----DISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI 360
Query: 389 NGELP 393
+ P
Sbjct: 361 SDLTP 365
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 64/174 (36%)
Query: 72 GNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE 131
GN S S+ ++L L L+ L G + L L ++ + P
Sbjct: 40 GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F L L L + C + P L L L+LQ N L L +LT L L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245
N + +F L +L + L +N++ P D L L ++ NN +
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 128 IPP-EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
IPP F KLR +D+++ IS P + L+ L++L L NK+T GL SL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
L L+ N + ++F L NL+L+ L+ N L+
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 128 IPP-EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
IPP F KLR +D+++ IS P + L+ L++L L NK+T GL SL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
L L+ N + ++F L NL+L+ L+ N L+
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 148 ISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSAL 207
I IPA +L L Q NKL+ L L L L+ N L F L
Sbjct: 31 IPSNIPADTKKLDL------QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 208 KNLSLVQLFKNNLR----GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDV 263
KNL + + N L+ G F V NL L++ N P KL L +
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLV----NLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 264 SSNQIEGKIPRDLC-KGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK---NQLNGT 319
N+++ +P+ + K LK L L N +PE GA + LT+ + +K NQL
Sbjct: 141 GYNELQS-LPKGVFDKLTSLKELRLYNNQLKR-VPE--GAFDKLTELKTLKLDNNQLK-R 195
Query: 320 IPAGIFN-LPLLKMIELDHN 338
+P G F+ L LKM++L N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 11/176 (6%)
Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE 247
+LDL N L+ ++F L L L+ L N L+ + NLE L V N
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 248 LPENLGRNRKLL---LLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304
LP +G +L+ L + NQ++ PR +L L L N
Sbjct: 100 LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 305 SLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
SL + R NQL +P G F+ L LK ++LD+N L +PE DSL +LK+
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE--GAFDSLEKLKM 209
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASL-SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
F L+KLR+L + N +PA + +LK L+ L++ NKL L++L +L
Sbjct: 57 FHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE 250
L N L P F +L L+ + L N L+ +L+ L+++ NN +PE
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY-NNQLKRVPE 174
Query: 251 N-LGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN 290
+ +L L + +NQ++ ++P E+LK L L +N
Sbjct: 175 GAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGN 73
L++L ++ N Q P I + LE L +N LP+ + L NL L N
Sbjct: 62 KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRN 119
Query: 74 YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPP-EF 132
P + + L YL L L L +L+E+ + +N +P F
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL--YNNQLKRVPEGAF 177
Query: 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMN 170
L++L+ L + + + + L+ L L LQ N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 9/157 (5%)
Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXX 403
IP N I +L + N ++ + LT L +L L +N+ LP +F
Sbjct: 31 IPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNL 87
Query: 404 XXXXXXXXXXGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462
+P + ++L + RN L P+ L L+ L+L N+L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 463 PIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDE 499
+ SL L L YNN VP G AFD+
Sbjct: 148 LPKGVFDKLTSLKELRL-YNNQLKRVPEG----AFDK 179
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
+P ++LR+L+ L+LS+ QL PT + SL L++S+NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 204 FSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLD 262
F +L+NL + + + R F +LEVL++ GN+F LP+ R L LD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 263 VSSNQIEGKIP 273
+S Q+E P
Sbjct: 182 LSQCQLEQLSP 192
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 78/196 (39%), Gaps = 14/196 (7%)
Query: 3 FDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLD-AFNNNFTGPLPVEIVS 61
FD + L+K +S L+ G Q F G T L+ LD +FN T + +
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDF------GTTSLKYLDLSFNGVIT--MSSNFLG 99
Query: 62 LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYF 121
L+ L+HL F + ++ E +S SL L I T F + L + +
Sbjct: 100 LEQLEHLDFQHSNLK-QMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157
Query: 122 --NTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHP 178
N++ P+ F L L LD++ C + P + + L L L + N
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Query: 179 ELSGLISLTQLDLSLN 194
L SL LD SLN
Sbjct: 218 PYKCLNSLQVLDYSLN 233
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
SL+VL ++GN FQ+ F I + L LD P SL +L+ L+ N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 75 FSGEIPESYSEIQSLEYL--GLNGI 97
F Y + SL+ L LN I
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 32/142 (22%)
Query: 131 EFGTLSKLRVLDMASCNISGEIPAS-----LSQLKLLD------------ALFLQMNKLT 173
+FGT S L+ LD++ +G I S L QL+ LD ++FL + L
Sbjct: 74 DFGTTS-LKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 174 ----GHIHPELS------GLISLTQLDLSLNCLTGE-VPESFSALKNLSLVQLFKNNLRG 222
H H ++ GL SL L ++ N +P+ F+ L+NL+ + L + L
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189
Query: 223 PFPSFVGDYPNLEVLQVWGNNF 244
P+ +L+VL + NNF
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 158/363 (43%), Gaps = 35/363 (9%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 38 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 92
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 93 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 148
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 149 SA-LSGLTSLQQLSFG-NQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 202
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 203 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 256
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 257 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 310
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390
+ L N +S P +S L +L A N ++ S+ NLTN+N LS +N+ +
Sbjct: 311 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD 366
Query: 391 ELP 393
P
Sbjct: 367 LTP 369
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 39/365 (10%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V T+L+ + + G ++ V L NL ++F N + P +++L L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLV 88
Query: 94 LNGIGLNGTAPVFLSLLKNLREMY-IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
I +N ++ L NL + + FN I P L+ L L+++S IS +I
Sbjct: 89 --DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DI 144
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
A LS L L L N++T + P L+ L +L +LD+S N ++ + L NL
Sbjct: 145 SA-LSGLTSLQQLNFG-NQVT-DLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLES 198
Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE--NLGRNRKLLLLDVSSNQIEG 270
+ N + P +G NL+ L + GN +L + L L LD+++NQI
Sbjct: 199 LIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISN 252
Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
P L +L L L N S P L +LT +NQL P I NL L
Sbjct: 253 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 306
Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAY--NNIAGKIPPSIGNLTNLNVLSLQNNRF 388
+ L N +S ++S SL +L+ + NN + S+ NLTN+N LS +N+
Sbjct: 307 TYLTLYFNNIS-----DISPVSSLTKLQRLFFSNNKVSDVS-SLANLTNINWLSAGHNQI 360
Query: 389 NGELP 393
+ P
Sbjct: 361 SDLTP 365
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
P L L L+ NKLT L LTQLDL+ N L +F LK+L+
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109
Query: 213 VQLFKN 218
+ L+ N
Sbjct: 110 IYLYNN 115
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 99/429 (23%), Positives = 175/429 (40%), Gaps = 89/429 (20%)
Query: 5 NWSSLSKP--KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSL 62
+W P M L++L++SGNG+ +++ F+N + ++
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGW-------------TVDITGNFSNAISKSQAFSLILA 239
Query: 63 KNLKHLSFGGNYFSGEIPESYSEI--QSLEYLGL-NGIGLNGTAPVFLSLLKNLREMYIG 119
++ FG + +++ + S+ +L L +G + + VF LK+L+ + +
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLA 298
Query: 120 YFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPAS----LSQLKLLDALFLQMNKLTGH 175
Y N F L L+VL++ S N+ GE+ +S L ++ +D LQ N +
Sbjct: 299 Y-NKINKIADEAFYGLDNLQVLNL-SYNLLGELYSSNFYGLPKVAYID---LQKNHIAII 353
Query: 176 IHPELSGLISLTQLDLSLNCLTG-----EVPESFSALKNL----------SLVQLFKNNL 220
L L LDL N LT +P+ F + L +L+ L +N L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 221 RG-PFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG 279
F+ P+L++L + N F+ S +Q + P
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSS----------------CSGDQTPSENP------ 451
Query: 280 ERLKSLILMQNLFSGPIPEEL--GACESLTKFRAM---KNQLNGTIPAGIF-NLPLLKMI 333
L+ L L +N+ EL E L+ + + N LN ++P G+F +L L+ +
Sbjct: 452 -SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGL 509
Query: 334 ELDHNLLS----GEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
L+ N L+ ++P NL I D S NQL + P+ +L+VL + +N+F
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQL----------LAPNPDVFVSLSVLDITHNKF 559
Query: 389 NGELPEEMF 397
E F
Sbjct: 560 ICECELSTF 568
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 138/363 (38%), Gaps = 91/363 (25%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F TL L+VL++A I+ + L L L L N L GL + +DL
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN 251
N + ++F L+ L + L N L + + P++ + + GN N
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 252 LGRNRKLLLLDVSSNQIEG-KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310
L N L+ +S N++E I L + L+ LIL QN FS ++ +
Sbjct: 401 LTAN----LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS-------- 448
Query: 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLL--SGEIPENLSISDSLNQLKVAY--NNIAG 366
+N P L+ + L N+L + E + + L+ L+V Y +N
Sbjct: 449 --EN-------------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 367 KIPPSI-GNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCIS 425
+PP + +LT L LSL +NR
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNR-------------------------------------- 515
Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
LT + S N L +L IL++SRNQL P P +SL+ LD+++N
Sbjct: 516 LTVL--SHNDLPA----------NLEILDISRNQLLAPNP---DVFVSLSVLDITHNKFI 560
Query: 486 GEV 488
E
Sbjct: 561 CEC 563
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 112/298 (37%), Gaps = 40/298 (13%)
Query: 110 LKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI--PASLSQLKLLDALFL 167
L NLR + +G Y P F L L L + C +S + LK L L L
Sbjct: 72 LPNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 168 QMNKLTG-HIHPELSGLISLTQLDLSLNCLTGEVPESFSAL--KNLSLVQLFKNNLRGPF 224
N++ ++HP L SL +D S N + L K LS L N+L
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL---- 186
Query: 225 PSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSN----QIEGKIPRDLCKGE 280
Y + V WG N RN L +LDVS N I G + K +
Sbjct: 187 ------YSRVSV--DWGKCM------NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 281 RLKSLILMQNLFSGPI-------PEE---LGACESLTKFRAMKNQLNGTIPAGIF-NLPL 329
SLIL ++ P++ G S + + + ++ + +F L
Sbjct: 233 AF-SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291
Query: 330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR 387
LK++ L +N ++ E D+L L ++YN + + L + + LQ N
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 27/188 (14%)
Query: 38 MTELEVLDAFNNNFTGPLPVEIVSLK---NLKHLSFGGNYFSGEIPES-YSEIQSLEYLG 93
+ L L N ++ PL +E + K L+ L + + P S + + L L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIP 153
L+ L+ + L+ L++LR + + G + G++SK +L M
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQ-------GNSFQDGSISKTNLLQMV--------- 474
Query: 154 ASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLV 213
SL L L L +++ H GL ++ LDLS N LTG+ ++ S LK L L
Sbjct: 475 GSLEILILSSCNLLSIDQQAFH------GLRNVNHLDLSHNSLTGDSMDALSHLKGLYL- 527
Query: 214 QLFKNNLR 221
+ NN+R
Sbjct: 528 NMASNNIR 535
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 49/285 (17%)
Query: 123 TYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS-QLKLLDALFLQMNKLTGHIHPELS 181
TY+ P FG LRV+ + + +P +S LLD LQ N ++ +
Sbjct: 22 TYSAMCP--FGCHCHLRVVQCSDLGLKA-VPKEISPDTTLLD---LQNNDISELRKDDFK 75
Query: 182 GLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWG 241
GL L L L N ++ ++FS L+ L + + KN+L
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-------------------- 115
Query: 242 NNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE--- 298
E+P NL + L+ L + N+I K+P+ + G R + I M P+
Sbjct: 116 -----EIPPNLPSS--LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMG---GNPLENSGF 164
Query: 299 ELGACE--SLTKFRAMKNQLNGTIPAGIFNLP-LLKMIELDHNLLSGEIPENLSISDSLN 355
E GA + L R + +L G IP +LP L + LDHN + E+L L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTG-IPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLY 220
Query: 356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLK 400
+L + +N I S+ L L L L NN+ + +P + +LK
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 30/185 (16%)
Query: 12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVS-LKNLKHLSF 70
P L+ L IS N + P + + EL + D N +P + S L+N+ +
Sbjct: 100 PLRKLQKLYISKNHLVE-IPPNLPSSLVELRIHD----NRIRKVPKGVFSGLRNMNCIEM 154
Query: 71 GGNYF--SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLR-----------EMY 117
GGN SG P ++ ++ L YL ++ L G L L E
Sbjct: 155 GGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213
Query: 118 IGYFNTYTGGIPP------EFGTLS---KLRVLDMASCNISGEIPASLSQLKLLDALFLQ 168
+ Y Y G+ E G+LS LR L + + +S +PA L LKLL ++L
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272
Query: 169 MNKLT 173
N +T
Sbjct: 273 TNNIT 277
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 61 SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG-----IGLNGTAPVFLSLLKNLRE 115
SL +L+HL N+ S + + SL+YL L G +G+ P L NL+
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN----LTNLQT 153
Query: 116 MYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK 171
+ IG T++ +F L+ L L++ + ++ SL ++ + L L +++
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 209
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 61 SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG-----IGLNGTAPVFLSLLKNLRE 115
SL +L+HL N+ S + + SL+YL L G +G+ P L NL+
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN----LTNLQT 127
Query: 116 MYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK 171
+ IG T++ +F L+ L L++ + ++ SL ++ + L L +++
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 176 IHPELSGLISLTQLDLSLNCLTGEVPESFSALK-NLSLVQLFKNNLRGPFP-SFVGDYPN 233
++P++ G I L+ LD++ EVP++ LK S+V+ + + P P SF+
Sbjct: 347 VYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSPCSFLA---- 402
Query: 234 LEVLQVWGNNFTGELPENLGRNRKLLLLDVSSN 266
F GE+ +GRN ++ +++ + N
Sbjct: 403 ----------FEGEM---MGRNVRVYVVNENEN 422
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 330 LKMIELDHNLLSGEIPENL-SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
L+++ L NL+ ENL +++D+L +L ++YN IA I L NL VL + NN+
Sbjct: 72 LRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKI 127
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 330 LKMIELDHNLLSGEIPENL-SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
L+++ L NL+ ENL +++D+L +L ++YN IA I L NL VL + NN+
Sbjct: 73 LRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKI 128
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 35 VVGMTELEVLDAFNNNFTGPLPVE-IVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93
V EL +D N + V+ I L N+++L+ GGN + E+ +L YL
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLI 91
Query: 94 LNGIGLNGTAPVFLSLLKNLREMYI--GYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE 151
L G L L NL+E+ + + G+ F L+ L L++A
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV---FDKLTNLTYLNLAH------ 142
Query: 152 IPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPES-FSALKNL 210
N+L L +LT+LDLS N L +PE F L L
Sbjct: 143 ------------------NQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQL 183
Query: 211 SLVQLFKNNLR 221
++L++N L+
Sbjct: 184 KDLRLYQNQLK 194
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 443 AISQLRDLSILNLSRNQLTGPIPTDMQDMMS-LTTLDLSYNNLNGEVPSG 491
+L +L+ LNL+ NQL +P + D ++ LT LDLSYN L +P G
Sbjct: 128 VFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEG 175
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 7/166 (4%)
Query: 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGY--FNTYTGGIPPEFGTLSKLRVLDMASCN 147
E L L GL + L L + + Y T + G+ F L++L L +A+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV---FDDLTELGTLGLANNQ 94
Query: 148 ISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSAL 207
++ L LD L+L N+L L L +L L+ N L +F L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 208 KNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTGELPENL 252
NL + L N L+ P +F L+ + ++GN F E L
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITLFGNQFDCSRCETL 199
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F L +LR ++ ++ I+ + ++ + L N+L H GL SL L L
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
N +T +SF L ++ L+ L+ N + P +L L + N F
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 48/272 (17%)
Query: 58 EIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMY 117
E ++L N K ++F + + +E L LN + + + ++++Y
Sbjct: 40 EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 99
Query: 118 IGYFNTYTGGIPPE-------------------------FGTLSKLRVLDMASCNISGEI 152
+G FN +PP F KL L M++ N+
Sbjct: 100 MG-FNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157
Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCL-TGEVPESFSALKNLS 211
+ L L L N+LT H +LS + SL ++S N L T +P A++ L
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLSTLAIP---IAVEELD 211
Query: 212 LVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGK 271
N +RGP L +L++ NN T L L+ +D+S N++E
Sbjct: 212 ASHNSINVVRGPVNV------ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 263
Query: 272 IPRDLCKGERLKSL------ILMQNLFSGPIP 297
+ K +RL+ L ++ NL+ PIP
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIP 295
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
+PK +S + L++++LS N+++ +M L TL LSYN L P
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 320 IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379
+P + N L +I+L +N +S ++ S L L ++YN + P + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 380 VLSLQNNRFNGELPEEMFN 398
+LSL N + +PE FN
Sbjct: 106 LLSLHGNDIS-VVPEGAFN 123
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
GN FT +P+ L + L L+D+S+N+I + +L +LIL N P
Sbjct: 40 GNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 301 GACESLTKFRAMKNQLNGTIPAGIFN 326
+SL N ++ +P G FN
Sbjct: 99 DGLKSLRLLSLHGNDIS-VVPEGAFN 123
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 152 IPASL-SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNL 210
+P SL S LLD +++L P + L +L L LS N L E+F + NL
Sbjct: 33 VPQSLPSYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT---GELPENLGRNRKLLLLDVSSNQ 267
+ L N+L D LEVL ++ N+ E++ + +KL L S NQ
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL---SQNQ 147
Query: 268 IEGKIPRDLCK-GERLKSLILM 288
I + P +L K G +L L+L+
Sbjct: 148 I-SRFPVELIKDGNKLPKLMLL 168
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 7/158 (4%)
Query: 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGY--FNTYTGGIPPEFGTLSKLRVLDMASCN 147
E L L GL + L L + + Y T + G+ F L++L L +A+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV---FDDLTELGTLGLANNQ 94
Query: 148 ISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSAL 207
++ L LD L+L N+L L L +L L+ N L +F L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 208 KNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNF 244
NL + L N L+ P +F L+ + ++GN F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITLFGNQF 191
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 417 PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTT 476
P + G + + N + K L L LNL NQ++ +P + + SLT+
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130
Query: 477 LDLSYNNLN 485
L+L+ N N
Sbjct: 131 LNLASNPFN 139
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 416 IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM-QDMMSL 474
+ + S L + ++N ++ A L L LNLS+N L G I + M +++ L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKL 349
Query: 475 TTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
LDLSYN H A + SF G PNL
Sbjct: 350 EVLDLSYN----------HIRALGDQSFLGLPNL 373
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSIS--DSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ L+ NL S E N I +L +L VA+N I K+P NLTNL L L +
Sbjct: 104 LQKLVALETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 386 NRFNG 390
N+
Sbjct: 161 NKIQS 165
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
L+KL+ L++ S IS + L+ L L++LFL N+L + GL +LT L LS N
Sbjct: 264 LTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 195 CLTGEVP 201
+T P
Sbjct: 322 HITDIRP 328
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 176 IHPELSGLISLTQLDLSLNCLTGEVPESFSALK-NLSLVQLFKNNLRGPFP 225
++P++ G I L+ LD++ EVP++ LK S+V+ + + P P
Sbjct: 347 VYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSP 397
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F S+L LD+ IS P +L +L L LQ N+L+ + +LT+L L
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN 251
N + F KNL + L N L NL+ L + N E
Sbjct: 115 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 174
Query: 252 LG--RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP-IPEELG---ACES 305
L N L L++SSNQI+ P RL L L N+ GP + E+L A S
Sbjct: 175 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTS 233
Query: 306 LTKFRAMKNQLNGTIPAGIFNLPL--LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
+ +QL+ T L L M++L +N L+ ++ + L + YNN
Sbjct: 234 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 293
Query: 364 IAGKIPPSIGNLTNLNVLSLQ 384
I S+ L N+ L+L+
Sbjct: 294 IQHLFSHSLHGLFNVRYLNLK 314
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 122/308 (39%), Gaps = 54/308 (17%)
Query: 34 IVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKH-----LSFGGNYFSGEIPESYSEIQS 88
+ G+ L+ L + +N+FT + + +L H L+ N S +++S +
Sbjct: 358 MFTGLINLKYL-SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 416
Query: 89 LEYL--GLNGIGLNGTAPVFLSLLKNLREMYIGYFNTY---------------------- 124
LE L GLN IG T + L +N+ E+Y+ Y N Y
Sbjct: 417 LEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSY-NKYLQLTRNSFALVPSLQRLMLRRV 474
Query: 125 ----TGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMN---KLTGHIH 177
P F L L +LD+++ NI+ L L+ L+ L LQ N +L H +
Sbjct: 475 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 534
Query: 178 PE-----LSGLISLTQLDLSLNCLTGEVP-ESFSALKNLSLVQLFKNNLRGPFPSFVGDY 231
P L GL L L+L N E+P E F L L ++ L NNL S +
Sbjct: 535 PGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 593
Query: 232 PNLEVLQVWGNNFTGELPENLG-RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290
+L+ L + N T + G R L LD+ N P D C E + + N
Sbjct: 594 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN------PFD-CTCESIAWFVNWIN 646
Query: 291 LFSGPIPE 298
IPE
Sbjct: 647 ETHTNIPE 654
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F S+L LD+ IS P +L +L L LQ N+L+ + +LT+L L
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN 251
N + F KNL + L N L NL+ L + N E
Sbjct: 110 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 169
Query: 252 LG--RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP-IPEELG---ACES 305
L N L L++SSNQI+ P RL L L N+ GP + E+L A S
Sbjct: 170 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTS 228
Query: 306 LTKFRAMKNQLNGTIPAGIFNLPL--LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
+ +QL+ T L L M++L +N L+ ++ + L + YNN
Sbjct: 229 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 288
Query: 364 IAGKIPPSIGNLTNLNVLSLQ 384
I S+ L N+ L+L+
Sbjct: 289 IQHLFSHSLHGLFNVRYLNLK 309
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 122/308 (39%), Gaps = 54/308 (17%)
Query: 34 IVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKH-----LSFGGNYFSGEIPESYSEIQS 88
+ G+ L+ L + +N+FT + + +L H L+ N S +++S +
Sbjct: 353 MFTGLINLKYL-SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 411
Query: 89 LEYL--GLNGIGLNGTAPVFLSLLKNLREMYIGYFNTY---------------------- 124
LE L GLN IG T + L +N+ E+Y+ Y N Y
Sbjct: 412 LEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSY-NKYLQLTRNSFALVPSLQRLMLRRV 469
Query: 125 ----TGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMN---KLTGHIH 177
P F L L +LD+++ NI+ L L+ L+ L LQ N +L H +
Sbjct: 470 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 529
Query: 178 PE-----LSGLISLTQLDLSLNCLTGEVP-ESFSALKNLSLVQLFKNNLRGPFPSFVGDY 231
P L GL L L+L N E+P E F L L ++ L NNL S +
Sbjct: 530 PGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 588
Query: 232 PNLEVLQVWGNNFTGELPENLG-RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290
+L+ L + N T + G R L LD+ N P D C E + + N
Sbjct: 589 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN------PFD-CTCESIAWFVNWIN 641
Query: 291 LFSGPIPE 298
IPE
Sbjct: 642 ETHTNIPE 649
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 200 VPESFSALKNLSLV--QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN----LG 253
V + +LK LSL +L R + + LE L V +FT + L
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338
Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKG 279
+NR LL L +S+N++E R+LC+G
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQG 364
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 200 VPESFSALKNLSLV--QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN----LG 253
V + +LK LSL +L R + + LE L V +FT + L
Sbjct: 278 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 337
Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKG 279
+NR LL L +S+N++E R+LC+G
Sbjct: 338 QNRFLLELQISNNRLEDAGVRELCQG 363
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F S+L LD+ IS P +L +L L LQ N+L+ + +LT+L L
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN 251
N + F KNL + L N L NL+ L + N E
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 252 LG--RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP-IPEELG---ACES 305
L N L L++SSNQI+ P RL L L N+ GP + E+L A S
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTS 223
Query: 306 LTKFRAMKNQLNGTIPAGIFNLPL--LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
+ +QL+ T L L M++L +N L+ ++ + L + YNN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 364 IAGKIPPSIGNLTNLNVLSLQ 384
I S+ L N+ L+L+
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLK 304
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 122/308 (39%), Gaps = 54/308 (17%)
Query: 34 IVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKH-----LSFGGNYFSGEIPESYSEIQS 88
+ G+ L+ L + +N+FT + + +L H L+ N S +++S +
Sbjct: 348 MFTGLINLKYL-SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406
Query: 89 LEYL--GLNGIGLNGTAPVFLSLLKNLREMYIGYFNTY---------------------- 124
LE L GLN IG T + L +N+ E+Y+ Y N Y
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSY-NKYLQLTRNSFALVPSLQRLMLRRV 464
Query: 125 ----TGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMN---KLTGHIH 177
P F L L +LD+++ NI+ L L+ L+ L LQ N +L H +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524
Query: 178 PE-----LSGLISLTQLDLSLNCLTGEVP-ESFSALKNLSLVQLFKNNLRGPFPSFVGDY 231
P L GL L L+L N E+P E F L L ++ L NNL S +
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583
Query: 232 PNLEVLQVWGNNFTGELPENLG-RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290
+L+ L + N T + G R L LD+ N P D C E + + N
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN------PFD-CTCESIAWFVNWIN 636
Query: 291 LFSGPIPE 298
IPE
Sbjct: 637 ETHTNIPE 644
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 136 SKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLT--GHIHPELSGLISLTQLDLS 192
++L L++ C ++ ++ +L L LD Q+ L G P +LT LD+S
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVS 109
Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENL 252
N LT + L L + L N L+ P + P LE L + NN T ELP L
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 168
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 136 SKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLT--GHIHPELSGLISLTQLDLS 192
++L L++ C ++ ++ +L L LD Q+ L G P +LT LD+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVS 108
Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENL 252
N LT + L L + L N L+ P + P LE L + NN T ELP L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSIS--DSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ ++ NL S E N I +L +L VA+N I K+P NLTNL L L +
Sbjct: 102 LQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 386 NRFNG 390
N+
Sbjct: 159 NKIQS 163
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 25/146 (17%)
Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
F + +L+VLD++ C I + L L L L N + SGL SL +L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-- 105
Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPE 250
V + ++L+N FP +G L+ L V N +LPE
Sbjct: 106 ------VAVETNLASLEN--------------FP--IGHLKTLKELNVAHNLIQSFKLPE 143
Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDL 276
L LD+SSN+I+ DL
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSIS--DSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ ++ NL S E N I +L +L VA+N I K+P NLTNL L L +
Sbjct: 103 LQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 386 NRFNG 390
N+
Sbjct: 160 NKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSIS--DSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ ++ NL S E N I +L +L VA+N I K+P NLTNL L L +
Sbjct: 104 LQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 386 NRFNG 390
N+
Sbjct: 161 NKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 329 LLKMIELDHNLLSGEIPENLSIS--DSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQN 385
L K++ ++ NL S E N I +L +L VA+N I K+P NLTNL L L +
Sbjct: 103 LQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 386 NRFNG 390
N+
Sbjct: 160 NKIQS 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,063,091
Number of Sequences: 62578
Number of extensions: 682057
Number of successful extensions: 2083
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 376
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)