Query 046055
Match_columns 549
No_of_seqs 304 out of 3661
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 08:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.8E-57 6E-62 498.9 38.9 500 9-512 88-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.2E-55 9E-60 481.7 35.6 505 3-511 57-587 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.5E-40 3.1E-45 312.1 4.7 387 137-524 79-468 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.8E-39 1E-43 301.9 5.5 368 90-460 81-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.9E-41 1.9E-45 300.1 -15.7 477 14-508 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 7.8E-40 1.7E-44 294.0 -19.1 460 10-491 64-546 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-35 3.1E-40 293.1 -5.6 465 16-508 23-489 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.1E-34 1.3E-38 281.6 -5.4 446 10-484 41-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.8E-33 8.2E-38 264.5 -5.5 368 11-412 4-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 9E-33 1.9E-37 262.0 -5.3 369 89-491 9-381 (1255)
11 PLN03210 Resistant to P. syrin 99.9 8.8E-23 1.9E-27 225.5 29.4 341 130-485 552-906 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2E-22 4.4E-27 222.7 29.8 346 80-458 551-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.4E-25 7.5E-30 199.7 -3.7 147 20-171 52-199 (498)
14 KOG4237 Extracellular matrix p 99.9 1.3E-24 2.9E-29 195.9 -4.2 421 43-482 50-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.6E-19 9.9E-24 182.1 17.8 260 186-489 203-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.6E-18 3.6E-23 178.0 17.9 263 162-468 203-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-19 3.2E-24 174.4 -0.7 136 372-507 161-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 3.3E-19 7.3E-24 171.9 -0.4 273 212-484 2-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 2.9E-17 6.2E-22 170.1 13.1 247 208-485 178-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 4.1E-17 8.9E-22 169.0 13.4 247 184-461 178-428 (754)
21 KOG0617 Ras suppressor protein 99.7 3.9E-19 8.5E-24 142.3 -5.9 180 324-508 29-212 (264)
22 KOG0617 Ras suppressor protein 99.6 4.2E-18 9.1E-23 136.5 -5.2 171 349-523 30-201 (264)
23 KOG1909 Ran GTPase-activating 99.3 1.1E-13 2.4E-18 124.2 -5.5 248 9-268 25-310 (382)
24 KOG1909 Ran GTPase-activating 99.2 1E-12 2.3E-17 118.1 -0.8 37 229-265 27-67 (382)
25 KOG1259 Nischarin, modulator o 99.2 3.9E-12 8.5E-17 111.9 1.4 128 352-485 284-412 (490)
26 KOG1259 Nischarin, modulator o 99.2 6.7E-12 1.4E-16 110.4 2.7 137 371-513 279-417 (490)
27 KOG4658 Apoptotic ATPase [Sign 99.2 1.4E-11 3E-16 130.3 4.9 108 12-120 543-651 (889)
28 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-11 5.6E-16 102.5 5.1 124 374-502 17-147 (175)
29 PLN03150 hypothetical protein; 99.1 1.6E-10 3.4E-15 119.9 10.5 118 401-518 419-539 (623)
30 KOG3207 Beta-tubulin folding c 99.1 6.3E-12 1.4E-16 116.3 -0.2 210 277-486 118-340 (505)
31 KOG3207 Beta-tubulin folding c 99.1 5.7E-12 1.2E-16 116.6 -0.5 214 12-245 119-339 (505)
32 COG4886 Leucine-rich repeat (L 99.1 9.1E-11 2E-15 116.4 6.8 152 329-487 141-292 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 99.6 5.1 102 375-479 41-147 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 2E-12 4.3E-17 123.4 -5.7 193 303-505 74-270 (722)
35 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.3E-15 114.8 6.6 195 308-510 97-292 (394)
36 KOG0532 Leucine-rich repeat (L 99.0 4.9E-12 1.1E-16 120.8 -5.4 193 281-483 76-271 (722)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3E-10 6.5E-15 120.3 4.0 108 10-119 567-676 (889)
38 PLN03150 hypothetical protein; 98.9 2.7E-09 5.8E-14 110.9 9.0 113 377-489 419-532 (623)
39 PF13855 LRR_8: Leucine rich r 98.9 9.4E-10 2E-14 76.3 2.6 59 425-483 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 2.1E-09 4.6E-14 74.5 3.4 60 401-460 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 3.3E-10 7.1E-15 112.5 -1.7 128 231-365 71-199 (414)
42 KOG0531 Protein phosphatase 1, 98.7 9.5E-10 2.1E-14 109.2 -2.0 263 232-509 49-319 (414)
43 KOG1859 Leucine-rich repeat pr 98.7 1.8E-10 3.9E-15 113.3 -8.5 184 321-513 102-297 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 1E-09 2.2E-14 96.8 -5.7 207 10-218 132-348 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-09 2.5E-14 96.5 -8.2 60 15-74 186-245 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 1.3E-09 2.7E-14 107.5 -10.2 125 354-485 166-292 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 2.3E-08 5E-13 87.3 -1.7 238 182-437 28-316 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.4 4.2E-08 9.1E-13 85.7 -1.7 185 324-509 88-317 (388)
49 KOG2982 Uncharacterized conser 98.3 1E-07 2.3E-12 84.4 0.5 207 16-245 47-262 (418)
50 KOG2982 Uncharacterized conser 98.3 2.8E-07 6E-12 81.8 1.1 184 135-318 70-263 (418)
51 KOG1644 U2-associated snRNP A' 98.1 6.1E-06 1.3E-10 69.3 5.4 105 377-483 43-151 (233)
52 KOG3665 ZYG-1-like serine/thre 98.1 9.8E-07 2.1E-11 91.6 0.7 152 14-167 122-282 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 5.9E-07 1.3E-11 70.3 -2.2 131 378-513 29-164 (177)
54 PF13306 LRR_5: Leucine rich r 98.0 2.5E-05 5.3E-10 63.8 7.0 121 348-474 8-128 (129)
55 KOG1644 U2-associated snRNP A' 97.9 2.8E-05 6.1E-10 65.5 6.1 100 17-120 22-122 (233)
56 PRK15386 type III secretion pr 97.9 7E-05 1.5E-09 71.8 9.6 136 300-458 48-187 (426)
57 KOG4341 F-box protein containi 97.9 1.9E-07 4.1E-12 86.7 -7.3 110 182-291 318-437 (483)
58 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.2E-10 49.8 3.5 36 425-461 2-37 (44)
59 PRK15386 type III secretion pr 97.8 7.2E-05 1.6E-09 71.7 8.6 136 277-434 49-187 (426)
60 PF13306 LRR_5: Leucine rich r 97.8 5.8E-05 1.3E-09 61.6 7.1 122 324-451 8-129 (129)
61 PF12799 LRR_4: Leucine Rich r 97.8 1.1E-05 2.5E-10 50.8 2.1 38 448-486 1-38 (44)
62 KOG4579 Leucine-rich repeat (L 97.7 4E-06 8.7E-11 65.7 -1.6 89 11-102 50-138 (177)
63 KOG4341 F-box protein containi 97.7 7E-07 1.5E-11 83.1 -7.1 322 14-337 110-461 (483)
64 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.4E-10 80.8 1.2 132 328-461 122-263 (699)
65 KOG2123 Uncharacterized conser 96.9 2.5E-05 5.5E-10 69.0 -5.5 100 375-478 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 58.9 2.4 116 368-485 35-156 (260)
67 KOG2123 Uncharacterized conser 96.5 0.00013 2.8E-09 64.6 -4.2 99 399-501 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.5 0.0019 4.2E-08 57.1 2.6 125 378-505 20-153 (260)
69 KOG1947 Leucine rich repeat pr 96.4 0.00018 3.9E-09 73.8 -4.7 35 38-72 187-223 (482)
70 KOG1947 Leucine rich repeat pr 96.3 0.00029 6.3E-09 72.2 -3.8 35 231-265 187-223 (482)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.018 3.9E-07 30.0 1.2 19 65-84 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 94.0 0.026 5.6E-07 29.4 0.8 12 426-437 2-13 (22)
73 KOG3864 Uncharacterized conser 93.1 0.012 2.6E-07 50.1 -1.9 82 87-168 101-184 (221)
74 KOG4308 LRR-containing protein 92.3 0.001 2.2E-08 66.4 -11.1 181 305-485 88-303 (478)
75 PF13504 LRR_7: Leucine rich r 91.9 0.12 2.5E-06 24.9 1.4 11 426-436 3-13 (17)
76 KOG3864 Uncharacterized conser 91.5 0.023 5.1E-07 48.4 -2.2 80 330-409 103-185 (221)
77 PF13516 LRR_6: Leucine Rich r 90.6 0.1 2.2E-06 27.8 0.5 16 424-439 2-17 (24)
78 KOG4308 LRR-containing protein 90.2 0.0037 8E-08 62.6 -9.6 182 16-198 89-304 (478)
79 KOG0473 Leucine-rich repeat pr 89.6 0.006 1.3E-07 52.9 -7.3 81 37-120 40-120 (326)
80 smart00370 LRR Leucine-rich re 89.1 0.4 8.8E-06 25.9 2.2 13 425-437 3-15 (26)
81 smart00369 LRR_TYP Leucine-ric 89.1 0.4 8.8E-06 25.9 2.2 13 425-437 3-15 (26)
82 smart00369 LRR_TYP Leucine-ric 88.8 0.37 8E-06 26.1 1.9 16 448-463 2-17 (26)
83 smart00370 LRR Leucine-rich re 88.8 0.37 8E-06 26.1 1.9 16 448-463 2-17 (26)
84 KOG0473 Leucine-rich repeat pr 86.1 0.016 3.5E-07 50.4 -6.8 86 349-437 39-124 (326)
85 TIGR00864 PCC polycystin catio 81.5 0.36 7.9E-06 57.3 -0.8 46 478-523 1-47 (2740)
86 smart00368 LRR_RI Leucine rich 76.1 1.3 2.7E-05 24.6 0.7 16 14-29 2-17 (28)
87 smart00365 LRR_SD22 Leucine-ri 72.7 3.5 7.5E-05 22.4 1.8 14 448-461 2-15 (26)
88 smart00364 LRR_BAC Leucine-ric 67.3 4.2 9E-05 22.1 1.4 18 472-490 2-19 (26)
89 KOG3763 mRNA export factor TAP 67.0 3.3 7E-05 41.5 1.7 36 399-434 217-254 (585)
90 KOG4242 Predicted myosin-I-bin 61.5 60 0.0013 32.4 8.8 60 425-484 414-480 (553)
91 smart00367 LRR_CC Leucine-rich 53.7 9.5 0.00021 20.5 1.4 13 423-435 1-13 (26)
92 KOG3763 mRNA export factor TAP 49.7 7.9 0.00017 38.9 1.1 79 422-501 216-307 (585)
93 KOG4242 Predicted myosin-I-bin 26.7 2.7E+02 0.0058 28.1 7.2 230 14-244 214-480 (553)
94 TIGR00864 PCC polycystin catio 22.9 48 0.001 40.8 1.8 32 430-461 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-57 Score=498.94 Aligned_cols=500 Identities=37% Similarity=0.611 Sum_probs=342.1
Q ss_pred cccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCC
Q 046055 9 LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS 88 (549)
Q Consensus 9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~ 88 (549)
.+..+++|++|+|++|.+.+.+|..++..+++|++|++++|.+++.+|. ..+++|++|++++|.+.+..|..+.++++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 3556788888888888887777877776777777777777777654442 34555555555555555555555555666
Q ss_pred CCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEecc
Q 046055 89 LEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQ 168 (549)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 168 (549)
|++|++++|.+.+..|..++++++|++|++++ +.+.+..|..++++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS-NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccC-CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 66666666555555555555555566665555 44444455555555555555555555555555555555555555555
Q ss_pred CccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCcc---------------------
Q 046055 169 MNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSF--------------------- 227 (549)
Q Consensus 169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------- 227 (549)
+|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 55554444444555555555555555544444444444455555555554444444444
Q ss_pred ---CCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCC
Q 046055 228 ---VGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304 (549)
Q Consensus 228 ---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 304 (549)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++++.|++++|.+.+..+..+..++
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 44444555555555544444444444455555555555555444444555555555555555555555555566666
Q ss_pred CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384 (549)
Q Consensus 305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 384 (549)
+|+.+++.+|++.+..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|+++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls 483 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS 483 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence 77777777777666666666677777777777777776666666667777777777777776666554 35788889999
Q ss_pred CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI 464 (549)
Q Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 464 (549)
+|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 99888888888889999999999999999889999999999999999999999999999999999999999999999889
Q ss_pred CccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCC
Q 046055 465 PTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPR 512 (549)
Q Consensus 465 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~ 512 (549)
|..+..+++|+.+++++|++.+.+|..+.+.++....+.||+.+|...
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-55 Score=481.71 Aligned_cols=505 Identities=33% Similarity=0.543 Sum_probs=422.4
Q ss_pred CCCcccccc-CCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccc-cCCCCcCEEEccCCcceeccC
Q 046055 3 FDNWSSLSK-PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGNYFSGEIP 80 (549)
Q Consensus 3 ~~~~~~~~~-~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~ls~~~~~~~~~ 80 (549)
++.|.++.. ...+++.|+|+++.+.+..+..+. .+++|++|++++|++.+.+|..+ ..+++|++|++++|.+.+..|
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p 135 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHh-CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC
Confidence 456766544 356899999999999887776655 99999999999999987777765 489999999999999987777
Q ss_pred ccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCC
Q 046055 81 ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLK 160 (549)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~ 160 (549)
. ..+++|++|++++|.+.+..|..++++++|++|++++ +.+.+..|..++++++|++|++++|.+.+..|..+..++
T Consensus 136 ~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 136 R--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred c--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc-CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 4 5688999999999999989999999999999999998 777778899999999999999999999988999999999
Q ss_pred CCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240 (549)
Q Consensus 161 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (549)
+|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 99999999999998888889999999999999999988889999999999999999999988888888899999999999
Q ss_pred CccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccC
Q 046055 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320 (549)
Q Consensus 241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 320 (549)
+|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|++.+.+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 99998888888889999999999999998888888888899999999999888777777888888888888888877666
Q ss_pred CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccccc--
Q 046055 321 PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-- 398 (549)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-- 398 (549)
|..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.++..+..
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 666666666666666666666555555555566666666666665555555555555555555555544444333322
Q ss_pred ---------------------CCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055 399 ---------------------LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457 (549)
Q Consensus 399 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 457 (549)
.++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 35667777777777777777888889999999999999888888999999999999999
Q ss_pred CcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCC
Q 046055 458 NQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLP 511 (549)
Q Consensus 458 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~ 511 (549)
|.+++.+|..+..+++|+.|++++|++.+.+|.. ..+++|+.+++++|+..+..
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 9999889999999999999999999999887764 67889999999999987533
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-40 Score=312.06 Aligned_cols=387 Identities=23% Similarity=0.193 Sum_probs=331.1
Q ss_pred CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055 137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216 (549)
Q Consensus 137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 216 (549)
.-+.|++++|.+....+..|.++++|+++++..|.+. .+|.......+++.|++.+|.|+.+..+.++.++.|+.++|+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4567888888888777788888999999999988887 455555556679999999999888878888888999999999
Q ss_pred cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296 (549)
Q Consensus 217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 296 (549)
.|.+.......+..-+++++|++++|.++......|..+.+|..|.++.|+++...+..|..++.|+.|++..|.+....
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99888655555555678999999999998777778888889999999999998655666666899999999999888666
Q ss_pred CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT 376 (549)
Q Consensus 297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 376 (549)
.-.|.++++|+.+.+..|.+...-...|+.+.++++|+++.|++......++.++.+|+.|++++|.|...-+..+..++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 67889999999999999999877778888999999999999999988777888899999999999999988888899999
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc---hhhhhCCCCCCEE
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI---PKAISQLRDLSIL 453 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~~~~L~~L 453 (549)
+|++|++++|+++...++.|..+..|++|+++.|++......+|..+++|+.|||++|.+...+ ...|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 9999999999999777888999999999999999998777788999999999999999987543 3457889999999
Q ss_pred ECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCccccC
Q 046055 454 NLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQ 524 (549)
Q Consensus 454 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~ 524 (549)
++.+|++..+.-.+|.++++|+.|||.+|.|...-|.+-.-..|+++.+..-.++|+|+..+..+|++.+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRK 468 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence 99999999677779999999999999999999777766433489999999999999999987777766543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-39 Score=301.90 Aligned_cols=368 Identities=20% Similarity=0.202 Sum_probs=234.9
Q ss_pred CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM 169 (549)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 169 (549)
+.|++++|.+....+..|.++++|+++++.+ |.++ .+|..-+...+++.|++.+|.|+....+.+..++.|+.|+++.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeecc-chhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 3455555555555555555555555555554 3332 3343333334466666666666555555555566666666666
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC
Q 046055 170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249 (549)
Q Consensus 170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 249 (549)
|.+..+....|..-.++++|++++|+|+......|.++.+|..|.|+.|+++...+..|..++.|+.|++..|.+...-.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 66665555555555566666666666665555556666666666666666665555555556666666666665553323
Q ss_pred ccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCC
Q 046055 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPL 329 (549)
Q Consensus 250 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 329 (549)
-.|.++++|+.|.+..|++...-++.|+.+..+++|++..|.+..+....+-+++.|+.|+++.|.|...-++....+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 44555666666666666665555555666666666666666666555555666666666666666666555566667777
Q ss_pred CCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCC---ccccccCCCCCEEE
Q 046055 330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL---PEEMFNLKVISLIN 406 (549)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ 406 (549)
|++|++++|.++...+..|..+..|++|.|+.|++...-...|..+++|++||+++|.+...+ ...|.++++|+.|+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 777777777777777777777777888888888877666667777788888888888765433 23466778888888
Q ss_pred ccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcc
Q 046055 407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460 (549)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 460 (549)
+.||++..+...+|.++++|++|+|.+|.|..+.+++|..+ .|++|.+..-.+
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 88888775556678888888888888888877777777777 777777665443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.9e-41 Score=300.06 Aligned_cols=477 Identities=26% Similarity=0.361 Sum_probs=357.5
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
..++.+++++|.+.. +-.++. .+..+.+|++++|++. ..|.+++.+..++.++.++|.+. .+|..+..+.+|..++
T Consensus 45 v~l~~lils~N~l~~-l~~dl~-nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLK-NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhh-ccHhhh-cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 467778888888765 344444 7788888888888888 67888888888888888888887 7888888888888888
Q ss_pred ccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcccc
Q 046055 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT 173 (549)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~ 173 (549)
+++|.+. ..++.++.+..+..++..+ +.+. ..|+.+..+.++..+++.+|.+....+..+. ++.|++++...|-+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~-N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATN-NQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccc-cccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence 8887766 4456777888888888876 4443 4677788888888888888888744444444 888888888888776
Q ss_pred ccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCcccc
Q 046055 174 GHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253 (549)
Q Consensus 174 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 253 (549)
..|..++.+.+|+.|++..|.+. ..| .|.+|..|++++.+.|.+.....+...+++++..|++.+|+++ ..|+.+.
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 56677888888888888888887 556 6788888888888888887444444557888888888888888 6777777
Q ss_pred CCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccC-----CCCCcEE----Ecc---CCcCc-ccC
Q 046055 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA-----CESLTKF----RAM---KNQLN-GTI 320 (549)
Q Consensus 254 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L----~l~---~~~l~-~~~ 320 (549)
-+.+|..||+++|.++ ..|..++++ .|+.|.+.+|.+..+-.+.+.. +++|+.- .++ +..-+ ...
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 7788888888888887 456677777 8888888888765321111100 1111110 000 00000 011
Q ss_pred Cc----cCCCCCCCCEEEeecCcCccccCccccC--CCCCCEEEccCceecccCCcccccCCCCC-EEEccCCcCCCCCc
Q 046055 321 PA----GIFNLPLLKMIELDHNLLSGEIPENLSI--SDSLNQLKVAYNNIAGKIPPSIGNLTNLN-VLSLQNNRFNGELP 393 (549)
Q Consensus 321 ~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~ 393 (549)
+. .....-+.++|++++-+++.++.+.|.. ..-....++++|++. .+|..+..+..+. .+.+++|.+. .+|
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~ 428 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVP 428 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cch
Confidence 11 1223456888999988888554444422 234778899999998 5666665555544 4666666665 788
Q ss_pred cccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCC
Q 046055 394 EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMS 473 (549)
Q Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 473 (549)
..+..+++|+.|++++|.+. .+|..+..+..|+.|+++.|++. ..|.++..+..+|.+-.++|++....++.+.++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 88889999999999999887 78888888889999999999998 78999888889999999999999777777999999
Q ss_pred CCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCC
Q 046055 474 LTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508 (549)
Q Consensus 474 L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~ 508 (549)
|..||+.+|.+...+|..|++.+++++.++|||+.
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999988888999999999999999976
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.8e-40 Score=294.01 Aligned_cols=460 Identities=26% Similarity=0.371 Sum_probs=373.0
Q ss_pred ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055 10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL 89 (549)
Q Consensus 10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L 89 (549)
..++..+.+|++.+|++.. .|..+. .+..++.++.++|++. .+|+.+..+..|+.+++++|.+. .+|+.+..+..|
T Consensus 64 l~nL~~l~vl~~~~n~l~~-lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQ-LPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhcccceeEEEeccchhhh-CCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 4567889999999999976 787787 8889999999999999 79999999999999999999998 888899999999
Q ss_pred CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM 169 (549)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 169 (549)
+.++..+|++. ..|.++.++.++..+++.+ +...... +..-.++.|+++++..|.++ ..|..++.+.+|+-|++..
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~-n~l~~l~-~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEG-NKLKALP-ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccc-cchhhCC-HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence 99999999988 5678888999999999988 6665444 44445999999999999887 7888999999999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCccccCc-cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccC
Q 046055 170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPE-SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248 (549)
Q Consensus 170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 248 (549)
|++... | .|.++..|+++.++.|++. ..|+ ...++.++..|++.+|++. ..|..+.-+.+|..|++++|.++ ..
T Consensus 216 Nki~~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 216 NKIRFL-P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL 290 (565)
T ss_pred cccccC-C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC
Confidence 999844 3 7999999999999999998 4454 4458999999999999998 67777778899999999999999 78
Q ss_pred CccccCCCCccEEECcCCcccccCCccccCCC---CccEEe-------cccccccc--------CCCccccCCCCCcEEE
Q 046055 249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKGE---RLKSLI-------LMQNLFSG--------PIPEELGACESLTKFR 310 (549)
Q Consensus 249 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~-------l~~~~~~~--------~~~~~~~~~~~L~~L~ 310 (549)
|..++++ +|+.|-+.+|.+.. +...+-+.. -|++|. ++...-+. ..........+.+.|+
T Consensus 291 p~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred Ccccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 8889998 99999999998752 112221111 111111 11111100 0011223344677888
Q ss_pred ccCCcCcccCCccCCCCCC---CCEEEeecCcCccccCccccCCCCCC-EEEccCceecccCCcccccCCCCCEEEccCC
Q 046055 311 AMKNQLNGTIPAGIFNLPL---LKMIELDHNLLSGEIPENLSISDSLN-QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN 386 (549)
Q Consensus 311 l~~~~l~~~~~~~~~~~~~---L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 386 (549)
+++-+++ .+|..++.... ...++++.|++. ..|..+..+..+. .+.+++|.+. ..|..++.+++|+.|++++|
T Consensus 369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred ccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccc
Confidence 8888887 67766654444 889999999998 4555555544444 4566666666 78888999999999999999
Q ss_pred cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055 387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT 466 (549)
Q Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 466 (549)
.+. .+|..++.+..|+.|+++.|++. ..|.++.....++.+-.++|++....++.+.++.+|..||+.+|.+. .+|.
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 887 88999999999999999999998 78888888888888888889999777888999999999999999999 7788
Q ss_pred cccCCCCCCeEeCCCCCCcccCCCC
Q 046055 467 DMQDMMSLTTLDLSYNNLNGEVPSG 491 (549)
Q Consensus 467 ~l~~l~~L~~L~l~~n~~~~~~p~~ 491 (549)
.++++++|++|++++|++. .++..
T Consensus 523 ~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred hhccccceeEEEecCCccC-CCHHH
Confidence 8999999999999999999 55554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=293.09 Aligned_cols=465 Identities=27% Similarity=0.357 Sum_probs=300.8
Q ss_pred ccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEcc
Q 046055 16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLN 95 (549)
Q Consensus 16 L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~ 95 (549)
++.|+++.|.+.. .|-.+..++-+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+++.+.
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhcccccccc-CchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 6777777777654 34444556666888888888887 57777888888888888888877 667777788888888888
Q ss_pred CCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcccccc
Q 046055 96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGH 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~ 175 (549)
+|... ..|..+..+++|+.|++++ +.+. ..|..+..++.+..+..++|..... ++... ++.+++..+.+.+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~-N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSF-NHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccch-hccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence 76655 5677788888888888886 4443 4556666667777777777621111 12111 55666666666555
Q ss_pred CCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCC
Q 046055 176 IHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255 (549)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 255 (549)
...++..+.+ .+++++|.+.. ..+..+.+|+.+....|++... ...-++++.|+.++|.++...+ -...
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~--~p~p 240 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV--HPVP 240 (1081)
T ss_pred hhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc--cccc
Confidence 4455555444 57777777651 2445667777777777766522 1134677777777777763222 2234
Q ss_pred CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL 335 (549)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 335 (549)
.+|++++++.|++. .+|.++..+.+|+.+....|.+. ..+..+....+|+.+.+..|.+. .+|......++|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 56777777777776 34577777777777777777774 44455566667777777777776 56665666777777777
Q ss_pred ecCcCccccCccccCCC-CCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccc
Q 046055 336 DHNLLSGEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG 414 (549)
Q Consensus 336 ~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (549)
..|++....+..+.... +++.|..+.|++.......=..++.|+.|.+.+|.+++...+.+.+.++|+.|++++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 77777633332222222 35566666666553222222345567777777777766655566677777777777777764
Q ss_pred cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCC
Q 046055 415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494 (549)
Q Consensus 415 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 494 (549)
.....+.++..|++|+||+|+++ .+|+....++.|+.|...+|++. ..| .+..++.|+.+|++.|.+....-.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 44445667777777777777776 55666777777777777777777 555 4666777777777777776432222222
Q ss_pred -CCCCccccCCCCCC
Q 046055 495 -PAFDEASFAGNPNL 508 (549)
Q Consensus 495 -~~l~~l~l~~n~~~ 508 (549)
|.|+.++++||+++
T Consensus 475 ~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRL 489 (1081)
T ss_pred CcccceeeccCCccc
Confidence 67777777777754
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-34 Score=281.61 Aligned_cols=446 Identities=26% Similarity=0.327 Sum_probs=346.3
Q ss_pred ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055 10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL 89 (549)
Q Consensus 10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L 89 (549)
+++.-+|++||+++|.+.. .|..+- .+.+|+.|.++.|.|. ..|.+..++++|+++.|..|... .+|..+..+++|
T Consensus 41 ~~~~v~L~~l~lsnn~~~~-fp~~it-~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISS-FPIQIT-LLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred hhheeeeEEeecccccccc-CCchhh-hHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence 3445569999999999865 777777 7899999999999998 68888999999999999999887 899999999999
Q ss_pred CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM 169 (549)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 169 (549)
++|++++|.+. ..|..+..+..+..+..++ |.... .++.. ..+.+++..+.+.+.++..+..++. .+++.+
T Consensus 117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~-N~~~~----~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASN-NEKIQ----RLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred cccccchhccC-CCchhHHhhhHHHHHhhhc-chhhh----hhccc-cchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 99999999877 5677888888888888887 42222 22232 2788888888887777777766666 689999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC
Q 046055 170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249 (549)
Q Consensus 170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 249 (549)
|.+. + ..+..+++|+.+....|+++... -.-++++.|...+|.+....+.. ...++++++++.+.+. .+|
T Consensus 188 N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp 257 (1081)
T KOG0618|consen 188 NEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLP 257 (1081)
T ss_pred chhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cch
Confidence 9887 2 45677888899888888876322 12378888888888887443322 2468899999999988 677
Q ss_pred ccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCC-CC
Q 046055 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFN-LP 328 (549)
Q Consensus 250 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~ 328 (549)
.++..+.+|+.+++.+|.+. ..|..+....+|+.+....|.+.. .+......+.|++|++..|.+. ..|..+.. ..
T Consensus 258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLN 334 (1081)
T ss_pred HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhh
Confidence 88888999999999999885 667777788889999888888874 4456677889999999999887 55543332 22
Q ss_pred -CCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEc
Q 046055 329 -LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINV 407 (549)
Q Consensus 329 -~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (549)
+++.+..+.+++.......-.....|+.|++.+|.+++...+.+.++++|+.|++++|++.......+.+++.|++|++
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 2666777777765332212223567888999999998887778888899999999999887344455678889999999
Q ss_pred cCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCC
Q 046055 408 SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484 (549)
Q Consensus 408 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 484 (549)
+||+++ .+|..+..++.|++|...+|.+. ..| .+..++.|+.+|++.|+++......-..-|.|++||+++|.-
T Consensus 415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999988 67788888999999999999987 667 678889999999999998755333233337899999999985
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.8e-33 Score=264.54 Aligned_cols=368 Identities=26% Similarity=0.346 Sum_probs=228.6
Q ss_pred cCCCcccEEEccCCCCC-CcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055 11 KPKMSLKVLNISGNGFQ-DYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL 89 (549)
Q Consensus 11 ~~~~~L~~L~Ls~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L 89 (549)
+-++-+|-+|+++|.+. +..|.++- .+++++.|.|.+.++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~-qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVE-QMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHH-HhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 44566666777777765 34455444 6666666666666666 56666666666666666666655 333345555556
Q ss_pred CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM 169 (549)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 169 (549)
+.+.++.|++. ...+|..+.++..|.+|+++.|.++ +.|..+..-+++-.|++++
T Consensus 81 Rsv~~R~N~LK------------------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 81 RSVIVRDNNLK------------------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY 135 (1255)
T ss_pred HHHhhhccccc------------------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc
Confidence 66555555443 2344555556666667777777666 5666666666677777777
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCcccc-ccC
Q 046055 170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT-GEL 248 (549)
Q Consensus 170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~ 248 (549)
|+|..+...-|.++..|-.||+++|++. .+|.....+.+|++|.+++|++.-.-...+..+.+|+.|++++++-+ ..+
T Consensus 136 N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 7776666666666666777777777766 45555666667777777777655322223344666677777766543 245
Q ss_pred CccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCC
Q 046055 249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLP 328 (549)
Q Consensus 249 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 328 (549)
|..+..+.+|+.+|++.|.+. ..|..++.+++|+.|++++|.++.. ......-.++++|+++.|+++ .+|..+..++
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 666777777777777777776 5677777777777777777776632 122333445666666666666 6666666666
Q ss_pred CCCEEEeecCcCccc-cCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEc
Q 046055 329 LLKMIELDHNLLSGE-IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINV 407 (549)
Q Consensus 329 ~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (549)
.|+.|...+|++.-. +|..++.+..|+.+...+|.+. ..|+.+++|..|+.|.++.|++. ..|+.+.-++.|+.||+
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 666666666665422 3445555566666666666655 56666666666666666666665 56666666666666666
Q ss_pred cCCcc
Q 046055 408 SSNNI 412 (549)
Q Consensus 408 ~~n~l 412 (549)
..|+-
T Consensus 370 reNpn 374 (1255)
T KOG0444|consen 370 RENPN 374 (1255)
T ss_pred cCCcC
Confidence 66653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9e-33 Score=261.98 Aligned_cols=369 Identities=25% Similarity=0.340 Sum_probs=226.6
Q ss_pred CCEEEccCCCCc-cccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEec
Q 046055 89 LEYLGLNGIGLN-GTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFL 167 (549)
Q Consensus 89 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 167 (549)
.+-.++++|.++ ...|.....+++++.|.+.. . .-..+|+.++.+.+|++|.++.|.+. .+...+..++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t-~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-T-KLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEech-h-hhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence 344556666555 34455555555666555543 1 12344555555555666655555554 33444555555555555
Q ss_pred cCcccccc-CCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccc
Q 046055 168 QMNKLTGH-IHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246 (549)
Q Consensus 168 ~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 246 (549)
.+|++... +|..+..+..|+.||+++|++. ..|..+...+++-.|++++|+|.++....+.++..|-.|++++|.+.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence 55555432 3344455555555555555555 34444555555555555555555444444444555555555555554
Q ss_pred cCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCc-ccCCccCC
Q 046055 247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLN-GTIPAGIF 325 (549)
Q Consensus 247 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~ 325 (549)
.+|+....+..|++|++++|.+. ......+..+++|+.|.+++.+-+ ..+|..+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~------------------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLN------------------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhh------------------------HHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 34444445555555555555443 222223333444444444444222 24666666
Q ss_pred CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEE
Q 046055 326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI 405 (549)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (549)
.+.+|..+|++.|.+. ..|+.+...++|+.|++++|.++ .+....+.+.+|++|+++.|+++ ..|.++..+++|+.|
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 7777777888777776 56667777777888888888877 34444556677888888888887 778888888888888
Q ss_pred EccCCcccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCC
Q 046055 406 NVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484 (549)
Q Consensus 406 ~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 484 (549)
...+|+++- -+|..+..+.+|+++..++|.+. ..|+++..+..|+.|.++.|++. .+|+.+.-++.|+.||++.|+-
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 888887652 25667777788888888888876 77888888888888888888877 6777788888888888888877
Q ss_pred cccCCCC
Q 046055 485 NGEVPSG 491 (549)
Q Consensus 485 ~~~~p~~ 491 (549)
...+|..
T Consensus 375 LVMPPKP 381 (1255)
T KOG0444|consen 375 LVMPPKP 381 (1255)
T ss_pred ccCCCCc
Confidence 6555543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=8.8e-23 Score=225.52 Aligned_cols=341 Identities=20% Similarity=0.222 Sum_probs=219.4
Q ss_pred ccccCCCCCCEEEccCccC------CccCCccccCC-CCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCc
Q 046055 130 PEFGTLSKLRVLDMASCNI------SGEIPASLSQL-KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPE 202 (549)
Q Consensus 130 ~~~~~~~~L~~L~l~~~~i------~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 202 (549)
.+|.++++|+.|.+..+.. ....|..+..+ ++|+.|.+.++.+.. .|..+ ...+|++|++.++.+. ..+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-cccc
Confidence 3455666666666644321 11234444444 346677766666653 33333 3456777777777665 3445
Q ss_pred cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCc
Q 046055 203 SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERL 282 (549)
Q Consensus 203 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 282 (549)
.+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 556667777777776554334443 5556777777777766555666667777777777777764443445433 56677
Q ss_pred cEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcc-------ccCccccCCCCCC
Q 046055 283 KSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG-------EIPENLSISDSLN 355 (549)
Q Consensus 283 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~-------~~~~~~~~~~~L~ 355 (549)
+.|++++|......+. ...+|+.|++.++.+. .+|..+ .+++|++|.+.++.... ..+.....+++|+
T Consensus 707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 7777777654433332 2356777777777765 455433 46777777776643211 1111223356788
Q ss_pred EEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCc
Q 046055 356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435 (549)
Q Consensus 356 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 435 (549)
.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|.. ..+|+.|++++|.
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG 857 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC
Confidence 88888887766778888888888888888886544666655 6788888888888654444432 3578888888888
Q ss_pred CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 485 (549)
++ .+|..+..+++|+.|++++|+--..++..+..+++|+.+++++|.-.
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 87 67778888888888888886544356667777888888888888644
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2e-22 Score=222.67 Aligned_cols=346 Identities=21% Similarity=0.241 Sum_probs=158.5
Q ss_pred CccccCCCCCCEEEccCCCC------ccccchhccCC-CCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccC
Q 046055 80 PESYSEIQSLEYLGLNGIGL------NGTAPVFLSLL-KNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152 (549)
Q Consensus 80 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 152 (549)
+.+|.++++|+.|.+..+.. ....|..+..+ .+|+.|.+.+ +.+ ..+|..| ...+|+.|++.++.+. ..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~-~~l-~~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK-YPL-RCMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC-CCC-CCCCCcC-CccCCcEEECcCcccc-cc
Confidence 34456666666666644321 12233334333 2455555554 222 2334444 3456666666666554 34
Q ss_pred CccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCC
Q 046055 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYP 232 (549)
Q Consensus 153 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 232 (549)
+..+..+++|+.++++++......+ .+..+++|++|++++|......|..+..+++|+.|++.+|.....+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 4445556666666665543222222 34555566666666554333455555556666666666554333444333 455
Q ss_pred CccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEcc
Q 046055 233 NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAM 312 (549)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (549)
+|+.|++++|......|.. .++|+.|+++++.+. .+|..+ .+++|++|.+.++.......
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~--------------- 764 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE--------------- 764 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc---------------
Confidence 6666666665433333321 244555666655554 233222 34455555554422110000
Q ss_pred CCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCC
Q 046055 313 KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL 392 (549)
Q Consensus 313 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 392 (549)
.+....+.....+++|+.|++++|......|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+
T Consensus 765 --~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 765 --RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred --cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 0000001111123445555555554444444444455555555555543333333332 3445555555554332233
Q ss_pred ccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055 393 PEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN 458 (549)
Q Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 458 (549)
|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|.-...+|.....+++|+.+++++|
T Consensus 842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 321 234555555555554 34444455555555555554333234444444555555555555
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.4e-25 Score=199.69 Aligned_cols=147 Identities=19% Similarity=0.255 Sum_probs=90.9
Q ss_pred EccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC-CC
Q 046055 20 NISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG-IG 98 (549)
Q Consensus 20 ~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~-~~ 98 (549)
+-++..+.. +|.++. +.-..++|..|+|+...+.+|+.+++||.||||+|.|+.+-|++|..+++|..|-+.+ |+
T Consensus 52 dCr~~GL~e-VP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLTE-VPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCccc-CcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 334444432 444333 3556677777777766666677777777777777777766677777777766666655 66
Q ss_pred CccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcc
Q 046055 99 LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK 171 (549)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~ 171 (549)
++......|+++..|+.|.+.- +.+.....+.|..++++..|.+-+|.+.......|..+..++.+.+..|.
T Consensus 128 I~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 6666556666676666666654 44444445566666666666666666653333356666666666665554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-24 Score=195.93 Aligned_cols=421 Identities=20% Similarity=0.211 Sum_probs=253.4
Q ss_pred EEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCcc
Q 046055 43 VLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFN 122 (549)
Q Consensus 43 ~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (549)
.++-++-.++ ++|..+- +.-..++|..|.|+.+.+.+|+.+++|+.|++++|.++.+.|++|..+.+|-.|.+.+++
T Consensus 50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4555666666 5665443 356788899999997777899999999999999999999999999999999999887767
Q ss_pred ccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCcc----
Q 046055 123 TYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG---- 198 (549)
Q Consensus 123 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~---- 198 (549)
.++......|+++..++.|.+.-|++.-...+.|..++++..|.+.+|.+..+....|.++.+++.+.+..|.+..
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 7877777789999999999999999887777889999999999999999887766788888888888888776321
Q ss_pred --------ccCccccCCCcCceeecccccCcccCCccCCC-CCCccEEEccCcccccc-CCccccCCCCccEEECcCCcc
Q 046055 199 --------EVPESFSALKNLSLVQLFKNNLRGPFPSFVGD-YPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLDVSSNQI 268 (549)
Q Consensus 199 --------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 268 (549)
..+..+++..-.....+...++....+..+.. ...+..--.+.+..... ....|..+++|+.+++++|++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 11222222222222222222222222111111 01111101111111111 112355666666666666666
Q ss_pred cccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc-cCcc
Q 046055 269 EGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE-IPEN 347 (549)
Q Consensus 269 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~ 347 (549)
+++.+.+|.....+++|.+..|.+..+....|.++..|+.|++.+|+++...|..|....+|.+|.+-.|.+.-. -..+
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence 666666666666666666666666655555666666666666666666655556666666666666655543200 0000
Q ss_pred ccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC---CCccc---------cccCCCCCE-EEccCCcccc
Q 046055 348 LSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG---ELPEE---------MFNLKVISL-INVSSNNISG 414 (549)
Q Consensus 348 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~---------~~~l~~L~~-L~l~~n~l~~ 414 (549)
+. .. +.+.+.. ..|. -.....++.+.+++..+.+ ..|+. -..++-+.+ ...++..+.
T Consensus 367 l~--~W-----lr~~~~~-~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk- 436 (498)
T KOG4237|consen 367 LG--EW-----LRKKSVV-GNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK- 436 (498)
T ss_pred HH--HH-----HhhCCCC-CCCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-
Confidence 00 00 0000000 0010 0111233444444432210 01111 112222332 233333333
Q ss_pred cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055 415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 415 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 482 (549)
.+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+++++|++.......|.+++.|.+|-|++|
T Consensus 437 ~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 437 LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4554433 35678899999998 45544 45677 8899999998666678888888988888775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.6e-19 Score=182.09 Aligned_cols=260 Identities=28% Similarity=0.350 Sum_probs=139.7
Q ss_pred CCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcC
Q 046055 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS 265 (549)
Q Consensus 186 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 265 (549)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|. ..++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC---cccccceeeccC
Confidence 344555555554 3343332 245555555555542 222 1355666666666555 2332 124555666666
Q ss_pred CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC
Q 046055 266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP 345 (549)
Q Consensus 266 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 345 (549)
|.+.. ++. .+..|+.|++.+|.++... . ..++|+.|++++|++. .+|.. .++|+.|++++|.+.+. |
T Consensus 272 N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~L-P 338 (788)
T PRK15387 272 NPLTH-LPA---LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSL-P 338 (788)
T ss_pred Cchhh-hhh---chhhcCEEECcCCcccccc-c---cccccceeECCCCccc-cCCCC---cccccccccccCccccc-c
Confidence 55542 221 1234555666666555321 1 2345666666666655 23321 23466666666666532 2
Q ss_pred ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCC
Q 046055 346 ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS 425 (549)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 425 (549)
. ...+|++|++++|++.+ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|++.. +|.. .++
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred c---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 2 12456677777776663 3332 245666677777665 34432 2456677777776663 3322 246
Q ss_pred CcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 426 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 489 (549)
|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 7777777777763 4432 235666777777776 556666677777777777777765443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.6e-18 Score=178.02 Aligned_cols=263 Identities=24% Similarity=0.323 Sum_probs=160.1
Q ss_pred CCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccC
Q 046055 162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWG 241 (549)
Q Consensus 162 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 241 (549)
-..|+++.+.+.. .|..+. ++|+.|++.+|.++. +|. .+++|++|++++|++.. +|.. .++|+.|++.+
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 3445555555442 222232 245555555555542 222 13455555555555552 2221 34566666666
Q ss_pred ccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCC
Q 046055 242 NNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIP 321 (549)
Q Consensus 242 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 321 (549)
|.+. .+|.. ..+|+.|++++|++.. +|. ..++|+.|++++|.+.... . ...+|+.|++.+|.+. .+|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCC-C---CcccccccccccCccc-ccc
Confidence 6555 23321 2445566666666552 232 2355666666666665431 1 1234666777777765 344
Q ss_pred ccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCC
Q 046055 322 AGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV 401 (549)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (549)
.. .++|+.|++++|.+.+. |. ...+|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccC
Confidence 31 24688888888888743 32 23577888888888873 5543 357888999999887 45543 357
Q ss_pred CCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055 402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM 468 (549)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 468 (549)
|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 8889999998873 5543 347888999999998 678888889999999999999986665555
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.5e-19 Score=174.40 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=63.6
Q ss_pred cccCCCCCEEEccCCcCCCC----CccccccCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCcccchhh
Q 046055 372 IGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGEIPKA 443 (549)
Q Consensus 372 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~~~~~ 443 (549)
+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+.. ...+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 33444555555555554421 1122233345555555555543221 223344555666666666655422222
Q ss_pred hh-C----CCCCCEEECCCCcccc----cCCccccCCCCCCeEeCCCCCCccc----CC-CCCCC-CCCCccccCCCCC
Q 046055 444 IS-Q----LRDLSILNLSRNQLTG----PIPTDMQDMMSLTTLDLSYNNLNGE----VP-SGGHF-PAFDEASFAGNPN 507 (549)
Q Consensus 444 ~~-~----~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p-~~~~~-~~l~~l~l~~n~~ 507 (549)
+. . .+.|++|++++|.++. .....+..+++|+++++++|.+... .. ....+ +.++++++.+||+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 11 1 2566666666666541 1222334445666666666666532 11 11223 4566666666653
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.3e-19 Score=171.90 Aligned_cols=273 Identities=24% Similarity=0.324 Sum_probs=196.5
Q ss_pred eeecccccCc-ccCCccCCCCCCccEEEccCccccc----cCCccccCCCCccEEECcCCcccc------cCCccccCCC
Q 046055 212 LVQLFKNNLR-GPFPSFVGDYPNLEVLQVWGNNFTG----ELPENLGRNRKLLLLDVSSNQIEG------KIPRDLCKGE 280 (549)
Q Consensus 212 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~l~~~~ 280 (549)
.|+|..+.+. ......+..+..|+.++++++.++. .++..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 3444445567789999999998853 244456677889999999987762 1233456678
Q ss_pred CccEEeccccccccCCCccccCCC---CCcEEEccCCcCccc----CCccCCCC-CCCCEEEeecCcCccc----cCccc
Q 046055 281 RLKSLILMQNLFSGPIPEELGACE---SLTKFRAMKNQLNGT----IPAGIFNL-PLLKMIELDHNLLSGE----IPENL 348 (549)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~l~~~----~~~~~~~~-~~L~~L~l~~~~l~~~----~~~~~ 348 (549)
+|+.|++++|.+....+..+..+. +|++|++.+|++.+. +...+..+ ++|++|++++|.+.+. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 999999999988754444444444 499999999988632 22344456 8999999999998843 22345
Q ss_pred cCCCCCCEEEccCceeccc----CCcccccCCCCCEEEccCCcCCCCC----ccccccCCCCCEEEccCCcccccCCccc
Q 046055 349 SISDSLNQLKVAYNNIAGK----IPPSIGNLTNLNVLSLQNNRFNGEL----PEEMFNLKVISLINVSSNNISGEIPTSI 420 (549)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (549)
..+..|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.+.+.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667899999999998742 2334556679999999999886443 3445678899999999999875333322
Q ss_pred c-----cCCCCcEEECCCCcCcc----cchhhhhCCCCCCEEECCCCccccc----CCccccCC-CCCCeEeCCCCCC
Q 046055 421 S-----GCISLTTVDFSRNSLSG----EIPKAISQLRDLSILNLSRNQLTGP----IPTDMQDM-MSLTTLDLSYNNL 484 (549)
Q Consensus 421 ~-----~~~~L~~L~L~~n~i~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l-~~L~~L~l~~n~~ 484 (549)
. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+... ....+... +.|+++++.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 23799999999999973 2345567778999999999999854 33444555 7899999999874
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.9e-17 Score=170.11 Aligned_cols=247 Identities=25% Similarity=0.438 Sum_probs=176.6
Q ss_pred CcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEec
Q 046055 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL 287 (549)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 287 (549)
.+...|.+.++.++. +|..+ .+.++.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 356788888887773 45433 357899999999888 5565443 58999999999887 345443 257889999
Q ss_pred cccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc
Q 046055 288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK 367 (549)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 367 (549)
++|.+... |..+ ..+|+.|++++|++. .+|..+. ++|+.|++++|.+... |..+ .++|+.|++++|.+..
T Consensus 249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-
Confidence 99888743 3333 247888999888887 5665443 5789999999888753 3333 2578888888888873
Q ss_pred CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCC
Q 046055 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQL 447 (549)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~ 447 (549)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence 44433 368888899988887 4665553 68888999988887 4555443 68888999999888 4455444
Q ss_pred CCCCEEECCCCcccccCCccc----cCCCCCCeEeCCCCCCc
Q 046055 448 RDLSILNLSRNQLTGPIPTDM----QDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 448 ~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~n~~~ 485 (549)
.+|+.|++++|++. .+|..+ ..++++..+++.+|++.
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 36888888998887 445433 34577888888888876
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=4.1e-17 Score=168.95 Aligned_cols=247 Identities=26% Similarity=0.430 Sum_probs=188.6
Q ss_pred CCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEEC
Q 046055 184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDV 263 (549)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 263 (549)
.+...|+++++.++ ..|..+. ++++.|++++|++.. +|..+ .++|++|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35788999998887 4555443 589999999999884 44443 358999999999988 5665443 57999999
Q ss_pred cCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc
Q 046055 264 SSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE 343 (549)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (549)
++|.+. .+|..+. .+|+.|++++|.+... +..+ +++|+.|++++|++. .+|..+ .++|+.|++++|.+...
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCccccC
Confidence 999988 4565553 5899999999988853 4433 358999999999987 455443 25799999999998854
Q ss_pred cCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccC
Q 046055 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC 423 (549)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (549)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.+. .+|..+.
T Consensus 320 -P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 320 -PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred -Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence 3333 3689999999999884 565443 69999999999997 6776553 68999999999998 4565544
Q ss_pred CCCcEEECCCCcCcccchhh----hhCCCCCCEEECCCCccc
Q 046055 424 ISLTTVDFSRNSLSGEIPKA----ISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 424 ~~L~~L~L~~n~i~~~~~~~----~~~~~~L~~L~l~~n~i~ 461 (549)
.+|+.|++++|++. .+|.. +..++.+..|++.+|.++
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47999999999998 44443 444588999999999987
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=3.9e-19 Score=142.33 Aligned_cols=180 Identities=25% Similarity=0.441 Sum_probs=146.1
Q ss_pred CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055 324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403 (549)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (549)
+..+.+++.|.++.|+++.+ |..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 44566778888888888844 445777888888888888888 67778888999999999988887 8888899999999
Q ss_pred EEEccCCcccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055 404 LINVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 404 ~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 482 (549)
.||+.+|++.+ ..|+.|-.+..|+.|++++|.+. .+|...+++++|+.|.+++|.+- ..|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999888753 47788888899999999999987 77777899999999999999988 77888888999999999999
Q ss_pred CCcccCCCCCCCC---CCCccccCCCCCC
Q 046055 483 NLNGEVPSGGHFP---AFDEASFAGNPNL 508 (549)
Q Consensus 483 ~~~~~~p~~~~~~---~l~~l~l~~n~~~ 508 (549)
++.-.+|+.+.+. .-+.+....|||.
T Consensus 184 rl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 184 RLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 9997777765543 3345566667765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.2e-18 Score=136.49 Aligned_cols=171 Identities=26% Similarity=0.428 Sum_probs=152.7
Q ss_pred cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055 349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT 428 (549)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 428 (549)
..+..++.|.++.|+++ ..|..+..+.+|+.|++.+|+++ ..|..++.+++|+.|+++-|++. ..|..|.+++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 35577889999999999 67777889999999999999998 88999999999999999999998 89999999999999
Q ss_pred EECCCCcCcc-cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055 429 VDFSRNSLSG-EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN 507 (549)
Q Consensus 429 L~L~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~ 507 (549)
||+.+|.+.+ .+|..|..++.|+.|++++|.+. .+|..++.+++|+.|.+++|.+...+-+.+.+..|+++++.||+.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 9999999975 47888999999999999999999 888889999999999999999997777889999999999999999
Q ss_pred CCCCCCCCCCCCcccc
Q 046055 508 LCLPRNVTCLPSIYSA 523 (549)
Q Consensus 508 ~~~~~~~~~~~~~~~~ 523 (549)
...|+....+.-+...
T Consensus 186 ~vlppel~~l~l~~~k 201 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNK 201 (264)
T ss_pred eecChhhhhhhhhhhH
Confidence 9888765544444333
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=1.1e-13 Score=124.20 Aligned_cols=248 Identities=24% Similarity=0.251 Sum_probs=155.3
Q ss_pred cccCCCcccEEEccCCCCCCcCChhhh---hCCCCCcEEEccCCC---CcCCCC-------ccccCCCCcCEEEccCCcc
Q 046055 9 LSKPKMSLKVLNISGNGFQDYFPGQIV---VGMTELEVLDAFNNN---FTGPLP-------VEIVSLKNLKHLSFGGNYF 75 (549)
Q Consensus 9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~---~~~~~L~~L~L~~~~---~~~~~~-------~~l~~l~~L~~L~ls~~~~ 75 (549)
+.....+++.++||||.+..+-.+.+. +.-++|+..++++-. ....+| .++..+++|++||||.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345678889999999988644333333 244677777777642 122233 3345667888888888876
Q ss_pred eeccCc----cccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCcc
Q 046055 76 SGEIPE----SYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE 151 (549)
Q Consensus 76 ~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 151 (549)
...-+. -+..++.|++|.+.+|.+....-..++. .|.+|. .......-+.|+++.+.+|.+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeeccccccc
Confidence 532222 2355677777777777765433222221 111111 111233456888888888877642
Q ss_pred ----CCccccCCCCCCeEeccCccccccCC----ccccCCCCCCEEeCCCCcCccc----cCccccCCCcCceeeccccc
Q 046055 152 ----IPASLSQLKLLDALFLQMNKLTGHIH----PELSGLISLTQLDLSLNCLTGE----VPESFSALKNLSLVQLFKNN 219 (549)
Q Consensus 152 ----~~~~l~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 219 (549)
....|...+.|+.+.+..|.|..... ..+..+++|+.|||..|.++.. +...+..+++|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 23456677888898888887764322 3467788999999999987642 34556677888888888888
Q ss_pred CcccCCccC-----CCCCCccEEEccCcccccc----CCccccCCCCccEEECcCCcc
Q 046055 220 LRGPFPSFV-----GDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQI 268 (549)
Q Consensus 220 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~ 268 (549)
+.+.....+ ...|+|+.+.+.+|.++.. +.......+.|+.|++++|++
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 775433322 2367888888888877632 122233456777777777776
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=1e-12 Score=118.05 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=19.5
Q ss_pred CCCCCccEEEccCcccccc----CCccccCCCCccEEECcC
Q 046055 229 GDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSS 265 (549)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~ 265 (549)
..+.++..+++++|.+... +...+.+.+.|+..++++
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 3455666666666665431 223344445555555554
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=3.9e-12 Score=111.85 Aligned_cols=128 Identities=24% Similarity=0.293 Sum_probs=68.8
Q ss_pred CCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEEC
Q 046055 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431 (549)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 431 (549)
..|+++++++|.|. .+.+...-.|.++.|++++|.+. .+. .+..+++|+.||+++|.+. ...+.-..+-+.+.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34555555555555 34444555556666666666554 222 2455566666666666554 22222233455666666
Q ss_pred CCCcCcccchhhhhCCCCCCEEECCCCcccccC-CccccCCCCCCeEeCCCCCCc
Q 046055 432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 432 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~ 485 (549)
++|.|.+. .++..+-+|+.||+++|+|...- -..++++|-|+.+.+.+|++.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66666422 34555666666666666665221 134555666666666666666
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=6.7e-12 Score=110.42 Aligned_cols=137 Identities=24% Similarity=0.316 Sum_probs=115.0
Q ss_pred ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055 371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450 (549)
Q Consensus 371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L 450 (549)
....+..|+++|+++|.|+ .+.+++.-.|.++.|++++|.+... +.++.+++|+.|||++|.++ ....+-..+-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3445678999999999998 8888888899999999999999743 34889999999999999998 444555678899
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc--cCCCCCCCCCCCccccCCCCCCCCCCC
Q 046055 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG--EVPSGGHFPAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~~l~~l~l~~n~~~~~~~~ 513 (549)
+.|.+++|.|... +.+..+-+|..||+++|+|.. .+...|.+|-|..+.+.+||..-.+..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9999999999844 467778899999999999974 344568999999999999998765543
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=1.4e-11 Score=130.29 Aligned_cols=108 Identities=25% Similarity=0.307 Sum_probs=68.2
Q ss_pred CCCcccEEEccCCCC-CCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCC
Q 046055 12 PKMSLKVLNISGNGF-QDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLE 90 (549)
Q Consensus 12 ~~~~L~~L~Ls~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~ 90 (549)
+++.|++|-+.++.. ...++..+|..++.|++|||++|.=...+|..++++-+||+|+++++.+. .+|..+.+++.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 345666666666651 22345555656777777777766444466777777777777777777766 6677777777777
Q ss_pred EEEccCCCCccccchhccCCCCCceeecCC
Q 046055 91 YLGLNGIGLNGTAPVFLSLLKNLREMYIGY 120 (549)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (549)
+|++..+......+.....+++||+|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 777766655444455555566777776654
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.6e-11 Score=102.46 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=39.8
Q ss_pred cCCCCCEEEccCCcCCCCCccccc-cCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCE
Q 046055 374 NLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI 452 (549)
Q Consensus 374 ~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 452 (549)
+..++++|++++|.|+ .+. .+. .+.+|+.|++++|.+... ..+..++.|++|++++|.|++..+.....+++|++
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3445666777777665 322 233 456677777777776632 23666777777777777777432222235677777
Q ss_pred EECCCCcccccCC-ccccCCCCCCeEeCCCCCCcccCCCC-----CCCCCCCcccc
Q 046055 453 LNLSRNQLTGPIP-TDMQDMMSLTTLDLSYNNLNGEVPSG-----GHFPAFDEASF 502 (549)
Q Consensus 453 L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~l~~l~l 502 (549)
|++++|+|.+... ..+..+++|+.|++.+|++... +.. ..+|+|+.++-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 7777777764321 3556677777777777777632 322 34566666653
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=1.6e-10 Score=119.89 Aligned_cols=118 Identities=31% Similarity=0.566 Sum_probs=101.0
Q ss_pred CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCC
Q 046055 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS 480 (549)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 480 (549)
.++.|++++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36788999999988889899999999999999999988888889999999999999999998889999999999999999
Q ss_pred CCCCcccCCCC--CCCCCCCccccCCCCCCCCCCC-CCCCC
Q 046055 481 YNNLNGEVPSG--GHFPAFDEASFAGNPNLCLPRN-VTCLP 518 (549)
Q Consensus 481 ~n~~~~~~p~~--~~~~~l~~l~l~~n~~~~~~~~-~~~~~ 518 (549)
+|.+.+.+|.. ..+..+..+++.+|+.+|..+. ..|.+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence 99999888864 2234667889999999997643 55643
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.3e-12 Score=116.29 Aligned_cols=210 Identities=18% Similarity=0.176 Sum_probs=132.8
Q ss_pred cCCCCccEEeccccccccCCC-ccccCCCCCcEEEccCCcCccc--CCccCCCCCCCCEEEeecCcCccccCc-cccCCC
Q 046055 277 CKGERLKSLILMQNLFSGPIP-EELGACESLTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDHNLLSGEIPE-NLSISD 352 (549)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~ 352 (549)
.++.+|+.+.+.++....... .....|++++.|+++.|-+... +......+|+|+.|+++.|.+..-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345778888888887764332 3566788888888888865432 223344678888888888877522111 112456
Q ss_pred CCCEEEccCceeccc-CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCC-cccccCCCCcEEE
Q 046055 353 SLNQLKVAYNNIAGK-IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIP-TSISGCISLTTVD 430 (549)
Q Consensus 353 ~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ 430 (549)
.+++|.++.|.++.. +...+..+|+|+.|++..|...........-+..|+.|+|++|++.+..- .....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 788888888877622 33345567788888888874222222333445677888888887763321 2455677888888
Q ss_pred CCCCcCccc-chhh-----hhCCCCCCEEECCCCcccccC-CccccCCCCCCeEeCCCCCCcc
Q 046055 431 FSRNSLSGE-IPKA-----ISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 431 L~~n~i~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
++.|++.+. .|++ ...+++|++|++..|+|.+.. -..+..+++|+.|.+..|.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888877643 2333 355678888888888875221 1234556777777777777763
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.7e-12 Score=116.59 Aligned_cols=214 Identities=19% Similarity=0.189 Sum_probs=99.9
Q ss_pred CCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCC--CCccccCCCCcCEEEccCCcceeccCcc-ccCCCC
Q 046055 12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGP--LPVEIVSLKNLKHLSFGGNYFSGEIPES-YSEIQS 88 (549)
Q Consensus 12 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~~~~-~~~l~~ 88 (549)
++..|+++.|.++.+.....+.....|++++.|||++|-+... +......+++|+.|+++.|.+....... -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4566677777766664322223444667777777777655431 1222345677777777776654211111 123456
Q ss_pred CCEEEccCCCCccccchh-ccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccC-CccccCCCCCCeEe
Q 046055 89 LEYLGLNGIGLNGTAPVF-LSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI-PASLSQLKLLDALF 166 (549)
Q Consensus 89 L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~ 166 (549)
|+.|.++.|.++...... ...+++|+.|++.. |...........-+..|+.|++++|.+.+.. ......++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~-N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA-NEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc-ccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 666666666665432221 23455555555555 2111111112222344555555555443111 11233344444444
Q ss_pred ccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCC--ccCCCCCCccEEEccCccc
Q 046055 167 LQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP--SFVGDYPNLEVLQVWGNNF 244 (549)
Q Consensus 167 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~ 244 (549)
++.+.+..+...... .-+....+++|++|++..|++.+ ++ ..+...++|+.|.+..+.+
T Consensus 278 ls~tgi~si~~~d~~------------------s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVE------------------SLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccCcchhcCCCcc------------------chhhhcccccceeeecccCcccc-ccccchhhccchhhhhhcccccc
Confidence 444444432111110 00012344566666666666542 11 1123456666666666655
Q ss_pred c
Q 046055 245 T 245 (549)
Q Consensus 245 ~ 245 (549)
.
T Consensus 339 n 339 (505)
T KOG3207|consen 339 N 339 (505)
T ss_pred c
Confidence 4
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=9.1e-11 Score=116.41 Aligned_cols=152 Identities=32% Similarity=0.533 Sum_probs=72.8
Q ss_pred CCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEcc
Q 046055 329 LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVS 408 (549)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (549)
+|+.|++++|.+... +..+..++.|+.|++++|++. .++......+.|+.|++++|++. .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 455555555554422 123344455555555555554 23322224455555555555554 444333333445555555
Q ss_pred CCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCccc
Q 046055 409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 409 ~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
+|++. ..+..+..+..+..+.+.+|++. ..+..+..+++++.|++++|.++...+ +....+++.|++++|.+...
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 55432 33344445555555555555554 223444555555555555555553322 55555555555555555433
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=7.7e-11 Score=99.59 Aligned_cols=102 Identities=28% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCccc-ccCCCCcEEECCCCcCcccc-hhhhhCCCCCCE
Q 046055 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEI-PKAISQLRDLSI 452 (549)
Q Consensus 375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~ 452 (549)
+.+|+.|++++|.++ .+ +.+..++.|+.|++++|++.. +...+ ..+++|++|++++|+|.+.. -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 344555555555544 22 134444555555555555542 22222 23455555555555554321 133445555555
Q ss_pred EECCCCcccccCC---ccccCCCCCCeEeC
Q 046055 453 LNLSRNQLTGPIP---TDMQDMMSLTTLDL 479 (549)
Q Consensus 453 L~l~~n~i~~~~~---~~l~~l~~L~~L~l 479 (549)
|++.+|.+..... ..+..+|+|+.||-
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 5555555542211 12344556666543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2e-12 Score=123.43 Aligned_cols=193 Identities=26% Similarity=0.427 Sum_probs=156.3
Q ss_pred CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEE
Q 046055 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS 382 (549)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 382 (549)
+..-...+++.|++. .+|..+..+-.|+.+.+..|.+. ..|..+.++..|..++++.|++. ..|..++.+ -|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 344456678888887 78888888888999999999887 66778888999999999999998 667666665 489999
Q ss_pred ccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055 383 LQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462 (549)
Q Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 462 (549)
+++|+++ .+|+.+...+.|..||.+.|.+. .+|..+.++.+|+.|++..|.+.+ +|..+.. -.|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-
Confidence 9999998 88888888899999999999997 778888999999999999999984 4555554 46889999999999
Q ss_pred cCCccccCCCCCCeEeCCCCCCcccCCCC----CCCCCCCccccCCC
Q 046055 463 PIPTDMQDMMSLTTLDLSYNNLNGEVPSG----GHFPAFDEASFAGN 505 (549)
Q Consensus 463 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~~~l~~l~l~~n 505 (549)
.+|-+|..+..|++|-|.+|++. .+|.. |..-=++.|+...|
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88889999999999999999998 66643 33223344444444
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.5e-10 Score=114.84 Aligned_cols=195 Identities=30% Similarity=0.486 Sum_probs=153.2
Q ss_pred EEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCC-CCCEEEccCceecccCCcccccCCCCCEEEccCC
Q 046055 308 KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN 386 (549)
Q Consensus 308 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 386 (549)
.+....+.+.... ......+.++.+++.++.+..+.+ ...... .|+.|++++|.+. .++..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3445555443122 223344778999999999885544 344443 8999999999998 55566789999999999999
Q ss_pred cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055 387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT 466 (549)
Q Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 466 (549)
++. .+|......+.|+.|++++|.+. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 998 66666657899999999999998 56665556677999999999755 55677888999999999999998 4467
Q ss_pred cccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCC
Q 046055 467 DMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCL 510 (549)
Q Consensus 467 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~ 510 (549)
.+..++++++|++++|.+. .++..+.+..++.+++++|...-.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhccccccceecccccccc-ccccccccCccCEEeccCcccccc
Confidence 7888899999999999999 555588889999999999876543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=4.9e-12 Score=120.78 Aligned_cols=193 Identities=30% Similarity=0.451 Sum_probs=160.2
Q ss_pred CccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEcc
Q 046055 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360 (549)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 360 (549)
--...+++.|.+. ..+..+..+..|+.+.+..|.+. .+|..+..+..|..++++.|.+. ..|..+..+ -|+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence 3345677888877 45667778888999999999887 88888999999999999999998 445545444 38999999
Q ss_pred CceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc
Q 046055 361 YNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI 440 (549)
Q Consensus 361 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 440 (549)
+|+++ .+|..++....|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+. .-.|..||+++|++. .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence 99999 78888888899999999999998 88888999999999999999998 5677666 457999999999998 78
Q ss_pred hhhhhCCCCCCEEECCCCcccccCCccccC--C-CCCCeEeCCCCC
Q 046055 441 PKAISQLRDLSILNLSRNQLTGPIPTDMQD--M-MSLTTLDLSYNN 483 (549)
Q Consensus 441 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--l-~~L~~L~l~~n~ 483 (549)
|-.|..++.|++|-|.+|.++ ..|..+.. . -=.++|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999999999999999998 66654422 2 226788888885
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=3e-10 Score=120.32 Aligned_cols=108 Identities=28% Similarity=0.286 Sum_probs=86.2
Q ss_pred ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055 10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL 89 (549)
Q Consensus 10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L 89 (549)
|..++.|++|||++|.-.+.+|..+. .+-+||+|+++++.+. .+|..+++++.|.+|++.++......|.....+++|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 77899999999999887788999998 9999999999999999 799999999999999999887655567777889999
Q ss_pred CEEEccCCCCc--cccchhccCCCCCceeecC
Q 046055 90 EYLGLNGIGLN--GTAPVFLSLLKNLREMYIG 119 (549)
Q Consensus 90 ~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~ 119 (549)
++|.+...... ......+.++.+|+.+.+.
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999875422 1122223444555555443
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=2.7e-09 Score=110.86 Aligned_cols=113 Identities=33% Similarity=0.569 Sum_probs=97.7
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
.++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999988899999999999999999999988888889999999999999999998899999999999999999
Q ss_pred CCcccccCCccccCC-CCCCeEeCCCCCCcccCC
Q 046055 457 RNQLTGPIPTDMQDM-MSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 457 ~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p 489 (549)
+|.+++.+|..+... .++..+++.+|+...-.|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999998888877653 467788899887664444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=9.4e-10 Score=76.31 Aligned_cols=59 Identities=39% Similarity=0.549 Sum_probs=32.8
Q ss_pred CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCC
Q 046055 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483 (549)
Q Consensus 425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 483 (549)
+|++|++++|+++...+.+|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555555555555555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.1e-09 Score=74.51 Aligned_cols=60 Identities=35% Similarity=0.491 Sum_probs=35.1
Q ss_pred CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcc
Q 046055 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460 (549)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 460 (549)
+|++|++++|++....+..|.++++|++|++++|.+....+.+|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544445555666666666666666555555566666666666666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=3.3e-10 Score=112.45 Aligned_cols=128 Identities=25% Similarity=0.220 Sum_probs=60.3
Q ss_pred CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310 (549)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 310 (549)
+..++.+.+..+.+.. ....+..+.+++.+++.+|.+..... .+..+++|+.|++++|.++... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhhe
Confidence 4455555565655552 22234555666666666666653321 1444556666666666555432 233344455555
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCceec
Q 046055 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIA 365 (549)
Q Consensus 311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~ 365 (549)
+.+|.+.. ...+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 55555431 1122234445555555554443322 1 233344444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=9.5e-10 Score=109.17 Aligned_cols=263 Identities=24% Similarity=0.248 Sum_probs=176.0
Q ss_pred CCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEc
Q 046055 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRA 311 (549)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 311 (549)
+..+.++...+........ ...+..++.++++.|.+.. ....+..+.+++.+++.+|.+..+.. .+..+++|+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDL 125 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheec
Confidence 4555555555433311111 1345667777788887764 23346777888999999988875432 1677888889999
Q ss_pred cCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cccccCCCCCEEEccCCcCCC
Q 046055 312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNG 390 (549)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~ 390 (549)
++|.|+...+ +..++.|+.|++++|.+... ..+..+..|+.+++++|++....+ . ...+.+++.+.+++|.+.
T Consensus 126 s~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~- 199 (414)
T KOG0531|consen 126 SFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR- 199 (414)
T ss_pred cccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-
Confidence 9988864332 44566688899998888744 245557888888888888875444 2 467788888888888775
Q ss_pred CCccccccCCCCCEEEccCCcccccCCcccccCC--CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055 391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCI--SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM 468 (549)
Q Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 468 (549)
..+.+..+..+..+++..|.+....+ +..+. +|+.+++++|++. ..+..+..++.++.|++.+|++... ..+
T Consensus 200 -~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~ 273 (414)
T KOG0531|consen 200 -EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGL 273 (414)
T ss_pred -cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccc
Confidence 22333444455556778887764332 22222 3889999999987 4435677788889999999988744 345
Q ss_pred cCCCCCCeEeCCCCCCcc---cCCC--CCCCCCCCccccCCCCCCC
Q 046055 469 QDMMSLTTLDLSYNNLNG---EVPS--GGHFPAFDEASFAGNPNLC 509 (549)
Q Consensus 469 ~~l~~L~~L~l~~n~~~~---~~p~--~~~~~~l~~l~l~~n~~~~ 509 (549)
...+.+..+...+|++.. .... ....+.++.+.+.+||..-
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 666777788888887662 2222 3566788888888887654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=1.8e-10 Score=113.34 Aligned_cols=184 Identities=26% Similarity=0.310 Sum_probs=117.7
Q ss_pred CccCCCCCCCCEEEeecCcCccccCccccCC-CCCCEEEccCceec---ccCCcc---c---ccCCCCCEEEccCCcCCC
Q 046055 321 PAGIFNLPLLKMIELDHNLLSGEIPENLSIS-DSLNQLKVAYNNIA---GKIPPS---I---GNLTNLNVLSLQNNRFNG 390 (549)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~---~~~~~~---~---~~~~~L~~L~l~~n~l~~ 390 (549)
|-.+..+.+|+.|.+.+|.+... ..+..+ ..|+.|...+ .+. ..+..+ + ..+..|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 44556677788888888776521 111111 2333332221 111 000000 1 01346777888888876
Q ss_pred CCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccC
Q 046055 391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD 470 (549)
Q Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 470 (549)
...+++.-++.++.|+++.|++++. +.+..|+.|++|||++|.++...--...++ .|..|.+++|.++.. ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence 6667777788888888888888643 367788888888888888874322223333 488888888888744 35777
Q ss_pred CCCCCeEeCCCCCCcccCC--CCCCCCCCCccccCCCCCCCCCCC
Q 046055 471 MMSLTTLDLSYNNLNGEVP--SGGHFPAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 471 l~~L~~L~l~~n~~~~~~p--~~~~~~~l~~l~l~~n~~~~~~~~ 513 (549)
+.+|+.||+++|-+.+.-. ..+.+..|+.+.+.|||.-|.|.-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence 8888889999888774322 335677888899999998887643
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1e-09 Score=96.79 Aligned_cols=207 Identities=17% Similarity=0.241 Sum_probs=123.1
Q ss_pred ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCC-CCccccCC-CCcCEEEccCCccee-ccCccccCC
Q 046055 10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGP-LPVEIVSL-KNLKHLSFGGNYFSG-EIPESYSEI 86 (549)
Q Consensus 10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l-~~L~~L~ls~~~~~~-~~~~~~~~l 86 (549)
-.+-+..+.+|+.+-.+.......+. -..+.++.+....+... +.+.+.-+ ..|++||+|+..++. .+-.-+..+
T Consensus 132 ~~de~lW~~lDl~~r~i~p~~l~~l~--~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C 209 (419)
T KOG2120|consen 132 ASDESLWQTLDLTGRNIHPDVLGRLL--SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQC 209 (419)
T ss_pred cccccceeeeccCCCccChhHHHHHH--hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHH
Confidence 34456778899999887643333332 24566777776555432 22223323 369999999998763 233446778
Q ss_pred CCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCC-ccccCCCCCCEEEccCccCCccCCccc-cC-CCCCC
Q 046055 87 QSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP-PEFGTLSKLRVLDMASCNISGEIPASL-SQ-LKLLD 163 (549)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~-l~~L~ 163 (549)
.+|+.|.+.++.+...+...++.-.+|+.|+++.++.++.... -.+..|+.|..|++++|.......... .. -++|.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 9999999999999888778888889999999998776654322 235678999999999997764322111 11 14566
Q ss_pred eEeccCcccc---ccCCccccCCCCCCEEeCCCCc-CccccCccccCCCcCceeecccc
Q 046055 164 ALFLQMNKLT---GHIHPELSGLISLTQLDLSLNC-LTGEVPESFSALKNLSLVQLFKN 218 (549)
Q Consensus 164 ~L~l~~~~l~---~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~ 218 (549)
.|+++++.-. .....-...+++|.+||+++|. ++......|..++.|+++.++.|
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 6666654211 0111112345566666665542 22211222233444444444444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.2e-09 Score=96.50 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=28.5
Q ss_pred cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCc
Q 046055 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74 (549)
Q Consensus 15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~ 74 (549)
.|+++|||...++...-..+...|.+|+-|++.++++.+.+...+++..+|+.|+++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 345555555444322222333345555555555555554444444555555555555443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=1.3e-09 Score=107.52 Aligned_cols=125 Identities=27% Similarity=0.387 Sum_probs=57.6
Q ss_pred CCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECC
Q 046055 354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFS 432 (549)
Q Consensus 354 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~ 432 (549)
|.+.++++|++. .....+.-++.|+.|++++|++++. . .+..+++|++|||++|.+. .+|. .-.+|. |+.|+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 344444444444 3333444445555555555555421 1 3444555555555555554 2222 122232 5555555
Q ss_pred CCcCcccchhhhhCCCCCCEEECCCCcccccC-CccccCCCCCCeEeCCCCCCc
Q 046055 433 RNSLSGEIPKAISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 433 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~ 485 (549)
+|.++.. ..+.++++|+.||+++|-+.+-. .+.+..+..|+.|+|.+|++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 5555432 23455555555555555554211 112333445555555555554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=2.3e-08 Score=87.26 Aligned_cols=238 Identities=18% Similarity=0.158 Sum_probs=130.1
Q ss_pred CCCCCCEEeCCCCcCccccC----ccccCCCcCceeecccccCc---ccCCccCCCCCCccEEEccCccccccCCccccC
Q 046055 182 GLISLTQLDLSLNCLTGEVP----ESFSALKNLSLVQLFKNNLR---GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254 (549)
Q Consensus 182 ~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 254 (549)
.+..++.+++++|.+...-. ..+.+-.+|+..++++--.. +.+++.+ . -+.+.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L----------------~-~Ll~aLlk 90 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNL----------------V-MLLKALLK 90 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHH----------------H-HHHHHHhc
Confidence 35677888888887764322 23334456666655542111 1111000 0 11122334
Q ss_pred CCCccEEECcCCcccccCCcc----ccCCCCccEEeccccccccCCC-------------ccccCCCCCcEEEccCCcCc
Q 046055 255 NRKLLLLDVSSNQIEGKIPRD----LCKGERLKSLILMQNLFSGPIP-------------EELGACESLTKFRAMKNQLN 317 (549)
Q Consensus 255 ~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~l~ 317 (549)
||+|+.+++++|.+....+.. +.+...|++|.+++|.+.-... +-.++-|.|+...+..|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 455555555555444333322 2233455555555554442221 12345677888888888776
Q ss_pred ccCCc-----cCCCCCCCCEEEeecCcCccccCc-----cccCCCCCCEEEccCceeccc----CCcccccCCCCCEEEc
Q 046055 318 GTIPA-----GIFNLPLLKMIELDHNLLSGEIPE-----NLSISDSLNQLKVAYNNIAGK----IPPSIGNLTNLNVLSL 383 (549)
Q Consensus 318 ~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~-----~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l 383 (549)
..+. .+.+..+|+++.+..|.+...... .+.++.+|+.|++.+|.++-. +...++.++.|++|.+
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 2222 233346899999999987644322 235678899999999988632 3345667788899999
Q ss_pred cCCcCCCCCccccc------cCCCCCEEEccCCcccccCCcc-----c--ccCCCCcEEECCCCcCc
Q 046055 384 QNNRFNGELPEEMF------NLKVISLINVSSNNISGEIPTS-----I--SGCISLTTVDFSRNSLS 437 (549)
Q Consensus 384 ~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~-----~--~~~~~L~~L~L~~n~i~ 437 (549)
.+|.+.......+. ..|+|+.|...+|...+..... + ..+|-|..|.+.+|++.
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 99987655443322 3567777777777554221111 0 13445555555555554
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=4.2e-08 Score=85.70 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=107.9
Q ss_pred CCCCCCCCEEEeecCcCccccCcc----ccCCCCCCEEEccCceecccCCcc-------------cccCCCCCEEEccCC
Q 046055 324 IFNLPLLKMIELDHNLLSGEIPEN----LSISDSLNQLKVAYNNIAGKIPPS-------------IGNLTNLNVLSLQNN 386 (549)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~n 386 (549)
+..||+|+.+++++|.+....|+. ++....|+.|.+++|.+...-... ..+-|.|+.++...|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445666666666666665444432 234456667777766654211111 124567888888888
Q ss_pred cCCCCCcc-----ccccCCCCCEEEccCCcccccCC-----cccccCCCCcEEECCCCcCccc----chhhhhCCCCCCE
Q 046055 387 RFNGELPE-----EMFNLKVISLINVSSNNISGEIP-----TSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSI 452 (549)
Q Consensus 387 ~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~ 452 (549)
++. ..+. .+..-..|+.+.+..|.|..... ..+..+.+|+.|+|.+|.++.. +...+...+.|+.
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 775 3221 12233577888888887652211 1234567888888888877743 2344555567788
Q ss_pred EECCCCcccccCCccc------cCCCCCCeEeCCCCCCcccC------CC--CCCCCCCCccccCCCCCCC
Q 046055 453 LNLSRNQLTGPIPTDM------QDMMSLTTLDLSYNNLNGEV------PS--GGHFPAFDEASFAGNPNLC 509 (549)
Q Consensus 453 L~l~~n~i~~~~~~~l------~~l~~L~~L~l~~n~~~~~~------p~--~~~~~~l~~l~l~~n~~~~ 509 (549)
|.+.+|-++......+ ...|+|..|...+|.+.+-+ |+ .+.+|-|..+.+.||+..-
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 8888887765544332 22577777777777664321 11 1456666667777776543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1e-07 Score=84.38 Aligned_cols=207 Identities=25% Similarity=0.275 Sum_probs=105.9
Q ss_pred ccEEEccCCCCCCcCC-hhhhhCCCCCcEEEccCCCCcC--CCCccccCCCCcCEEEccCCcceeccCccc-cCCCCCCE
Q 046055 16 LKVLNISGNGFQDYFP-GQIVVGMTELEVLDAFNNNFTG--PLPVEIVSLKNLKHLSFGGNYFSGEIPESY-SEIQSLEY 91 (549)
Q Consensus 16 L~~L~Ls~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~-~~l~~L~~ 91 (549)
+..+.+-++.+..... ..+...+++++.+||.+|.|++ .+...+.++|+|++|+++.|++...+ ..+ ..+.+|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEE
Confidence 3355556666654333 2344466788888888888875 33344577888888888888876322 222 34567888
Q ss_pred EEccCCCCccccc-hhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCc--cccCCCCCCeEecc
Q 046055 92 LGLNGIGLNGTAP-VFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPA--SLSQLKLLDALFLQ 168 (549)
Q Consensus 92 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~ 168 (549)
|.+.+..+..... ..+..++.+++|.++. | +++.+++..+.+....+. .+...+++..++..
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~-N--------------~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~ 190 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSD-N--------------SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN 190 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhcc-c--------------hhhhhccccccccccchhhhhhhcCCcHHHHHHH
Confidence 8888876654332 2344555555555554 1 223333333332211100 01111222222222
Q ss_pred CccccccCCccccCCCCCCEEeCCCCcCcccc-CccccCCCcCceeecccccCccc-CCccCCCCCCccEEEccCcccc
Q 046055 169 MNKLTGHIHPELSGLISLTQLDLSLNCLTGEV-PESFSALKNLSLVQLFKNNLRGP-FPSFVGDYPNLEVLQVWGNNFT 245 (549)
Q Consensus 169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 245 (549)
.|++. +-++++..+-+..|.+.+.. ...+..++.+..|+++.+++.+- -.+.+..++.|..|.+.++.+.
T Consensus 191 ~~~l~-------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 191 KNKLS-------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHhHH-------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 22222 12345555555555443221 12333445555666666665531 1123445666666666666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.8e-07 Score=81.79 Aligned_cols=184 Identities=20% Similarity=0.115 Sum_probs=102.1
Q ss_pred CCCCCEEEccCccCCc--cCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCcccc-CccccCCCcCc
Q 046055 135 LSKLRVLDMASCNISG--EIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEV-PESFSALKNLS 211 (549)
Q Consensus 135 ~~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~ 211 (549)
++.++.+++.+|.|++ ++...+..++.|++|+++.|++...+...-....+|+.|-+.+..+.... ...+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566677777776663 33344566777777777777766443322234557777777777665332 23345677777
Q ss_pred eeecccccCcccCCc---cCCCCCCccEEEccCccccc--cCCccccCCCCccEEECcCCcccccC-CccccCCCCccEE
Q 046055 212 LVQLFKNNLRGPFPS---FVGDYPNLEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSSNQIEGKI-PRDLCKGERLKSL 285 (549)
Q Consensus 212 ~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L 285 (549)
.+.++.|.......+ .-...+.+++++...|.... .....-..+|++..+.+..|.+.+.. ......++.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777777744421111 11123466666666664321 11111233567777777777654321 1233344556666
Q ss_pred eccccccccCCC-ccccCCCCCcEEEccCCcCcc
Q 046055 286 ILMQNLFSGPIP-EELGACESLTKFRAMKNQLNG 318 (549)
Q Consensus 286 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~ 318 (549)
+++.+++.+... +++.+++.+..+.+..+.+.+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 666666654322 455666667777666666543
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=6.1e-06 Score=69.31 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=63.7
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc-hhhhhCCCCCCEEEC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI-PKAISQLRDLSILNL 455 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l 455 (549)
....+|+++|.+. . .+.|.+++.|.+|.+++|+|+.+.|.--..+++|+.|.+.+|.|.... .+-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4456777777653 1 234556677777777777777655554455566777777777765321 123556677777777
Q ss_pred CCCcccccC---CccccCCCCCCeEeCCCCC
Q 046055 456 SRNQLTGPI---PTDMQDMMSLTTLDLSYNN 483 (549)
Q Consensus 456 ~~n~i~~~~---~~~l~~l~~L~~L~l~~n~ 483 (549)
-+|.++..- ...+..+|+|+.||..+=.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777765321 1234556777777765544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=9.8e-07 Score=91.62 Aligned_cols=152 Identities=24% Similarity=0.280 Sum_probs=104.5
Q ss_pred CcccEEEccCCCC-CCcCChhhhhCCCCCcEEEccCCCCcC-CCCccccCCCCcCEEEccCCcceeccCccccCCCCCCE
Q 046055 14 MSLKVLNISGNGF-QDYFPGQIVVGMTELEVLDAFNNNFTG-PLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEY 91 (549)
Q Consensus 14 ~~L~~L~Ls~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~ 91 (549)
.+|++||++|... ...-+..++..+|.|+.|.+++-.+.. ......+++++|+.||+|++.++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5789999998774 333456778889999999999876653 2233457889999999999998743 56788999999
Q ss_pred EEccCCCCcc-ccchhccCCCCCceeecCCccccCcc-C----CccccCCCCCCEEEccCccCCccCCcc-ccCCCCCCe
Q 046055 92 LGLNGIGLNG-TAPVFLSLLKNLREMYIGYFNTYTGG-I----PPEFGTLSKLRVLDMASCNISGEIPAS-LSQLKLLDA 164 (549)
Q Consensus 92 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~----~~~~~~~~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~ 164 (549)
|.+++-.+.. .....+-++++|++||++........ + .+.-..++.|+.||++++.+.+...+. +...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9998766654 33456778999999999873222211 1 111234788999999988877543332 233455555
Q ss_pred Eec
Q 046055 165 LFL 167 (549)
Q Consensus 165 L~l 167 (549)
+..
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=5.9e-07 Score=70.25 Aligned_cols=131 Identities=19% Similarity=0.312 Sum_probs=69.7
Q ss_pred CCEEEccCCcCCCCCccc---cccCCCCCEEEccCCcccccCCcccc-cCCCCcEEECCCCcCcccchhhhhCCCCCCEE
Q 046055 378 LNVLSLQNNRFNGELPEE---MFNLKVISLINVSSNNISGEIPTSIS-GCISLTTVDFSRNSLSGEIPKAISQLRDLSIL 453 (549)
Q Consensus 378 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 453 (549)
+..+++++|.+- .++.. +.....|+..++++|.+. ..|..|. ..+.++.|++++|.|. .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555543 23332 223344555566666665 3333332 3346666677777766 455556666777777
Q ss_pred ECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCc-cccCCCCCCCCCCC
Q 046055 454 NLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDE-ASFAGNPNLCLPRN 513 (549)
Q Consensus 454 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~-l~l~~n~~~~~~~~ 513 (549)
+++.|.+. ..|..+..+.++..|+..+|.+. .+|.....+++.. +.+..+||--.++.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 77777766 44555555666667777666665 3333223333332 33344455544433
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.96 E-value=2.5e-05 Score=63.85 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=43.0
Q ss_pred ccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCc
Q 046055 348 LSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427 (549)
Q Consensus 348 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 427 (549)
|..+..|+.+.+.. .+.......|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444444444442 233333444555555555555443 3322333444444555555543 22223334455555666
Q ss_pred EEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCC
Q 046055 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL 474 (549)
Q Consensus 428 ~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 474 (549)
.+++..+ +.......|... +|+.+.+.+ .+..+....|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666543 433444445554 666666554 3332444555555554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.8e-05 Score=65.45 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=66.2
Q ss_pred cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055 17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG 96 (549)
Q Consensus 17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (549)
+.++|.+.++.. .+.......+...+||++|.+... ..|..+++|.+|.+++|.|..+.|.--..+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccc--hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 567777777653 222444667788888988887632 4467778888889999888866666556677888888888
Q ss_pred CCCccccc-hhccCCCCCceeecCC
Q 046055 97 IGLNGTAP-VFLSLLKNLREMYIGY 120 (549)
Q Consensus 97 ~~~~~~~~-~~~~~l~~L~~L~l~~ 120 (549)
|++..... .-+..++.|++|.+-+
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cchhhhhhcchhccCCccceeeecC
Confidence 87765321 2234444555554443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=7e-05 Score=71.78 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=69.7
Q ss_pred ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379 (549)
Q Consensus 300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 379 (549)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.-....|..+ +++|++|++++|.....+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 344577777777777665 4452 23457777777765444444433 3567777777763221333 2456
Q ss_pred EEEccCCcCC--CCCccccccCCCCCEEEccCCc-ccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEEC
Q 046055 380 VLSLQNNRFN--GELPEEMFNLKVISLINVSSNN-ISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNL 455 (549)
Q Consensus 380 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 455 (549)
.|++.++... +.+| ++|+.|.+.+++ ... ..+.. -.++|++|++++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 6666554432 1222 245555554322 110 01111 1246777777776654 3333333 46677776
Q ss_pred CCC
Q 046055 456 SRN 458 (549)
Q Consensus 456 ~~n 458 (549)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 655
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.89 E-value=1.9e-07 Score=86.73 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCCCCCEEeCCCCc-CccccCccc-cCCCcCceeecccccCcc--cCCccCCCCCCccEEEccCccccccC-----Cccc
Q 046055 182 GLISLTQLDLSLNC-LTGEVPESF-SALKNLSLVQLFKNNLRG--PFPSFVGDYPNLEVLQVWGNNFTGEL-----PENL 252 (549)
Q Consensus 182 ~l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l 252 (549)
..++|+.+.++.++ +++.....+ .++++|+.+++..+.... .+...-.+++.|+.+.+++|...... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34566666666654 222111112 245667777776664432 12222335677777777776543111 1111
Q ss_pred cCCCCccEEECcCCcc-cccCCccccCCCCccEEeccccc
Q 046055 253 GRNRKLLLLDVSSNQI-EGKIPRDLCKGERLKSLILMQNL 291 (549)
Q Consensus 253 ~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~ 291 (549)
.....++.+.++++.. .+.....+..+++|+.+++..++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 2345677777777754 33444556667788887776664
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2e-05 Score=49.77 Aligned_cols=36 Identities=36% Similarity=0.679 Sum_probs=15.1
Q ss_pred CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
+|++|++++|+|+ .++..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22333444444444444444444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=7.2e-05 Score=71.69 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=63.9
Q ss_pred cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ 356 (549)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 356 (549)
..+.+++.|++++|.+... | .-.++|++|.+.++.-...+|..+ .++|+.|++++|...... +.+|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccce
Confidence 3346666677766655533 2 123356666666643333444333 246667777666321122 234666
Q ss_pred EEccCceecccCCcccccC-CCCCEEEccCCcCC--CCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055 357 LKVAYNNIAGKIPPSIGNL-TNLNVLSLQNNRFN--GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433 (549)
Q Consensus 357 L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 433 (549)
|++..+.... +..+ ++|+.|.+.+++-. ...+.. -.++|+.|++++|... ..|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 6665444321 1111 24555655432211 011111 1146667777666644 3333333 4666666665
Q ss_pred C
Q 046055 434 N 434 (549)
Q Consensus 434 n 434 (549)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.83 E-value=5.8e-05 Score=61.61 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055 324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403 (549)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (549)
|..+++|+.+.+.. .+..+....|..++.++.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444455555443 233344444555555555555443 3333444455555555555544 22212233444455666
Q ss_pred EEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCC
Q 046055 404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLS 451 (549)
Q Consensus 404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 451 (549)
.+++..+ +.......|.++ .|+.+.+.. .+......+|.++++||
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 6666543 333344455555 666666655 33334445555555543
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.1e-05 Score=50.85 Aligned_cols=38 Identities=37% Similarity=0.656 Sum_probs=31.3
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 448 RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 448 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
++|++|++++|+|++ ++..+..+++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 579999999999995 45568999999999999999984
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=4e-06 Score=65.71 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=53.8
Q ss_pred cCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCC
Q 046055 11 KPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLE 90 (549)
Q Consensus 11 ~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~ 90 (549)
.+...|+.++|++|.+.. .|..+..+++-++.+++++|.+. .+|..++.++.|+.|+++.|.+. ..|..+..+.++.
T Consensus 50 ~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 344555666666666654 55555556666666666666666 45666666666666666666665 4555555566666
Q ss_pred EEEccCCCCccc
Q 046055 91 YLGLNGIGLNGT 102 (549)
Q Consensus 91 ~L~l~~~~~~~~ 102 (549)
.|+..++.....
T Consensus 127 ~Lds~~na~~ei 138 (177)
T KOG4579|consen 127 MLDSPENARAEI 138 (177)
T ss_pred HhcCCCCccccC
Confidence 666666555433
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.69 E-value=7e-07 Score=83.08 Aligned_cols=322 Identities=16% Similarity=0.100 Sum_probs=187.1
Q ss_pred CcccEEEccCCCCC--CcCChhhhhCC-CCCcEEEccCCCCcCC--CCccccCCCCcCEEEccCCcce-eccCccc-cCC
Q 046055 14 MSLKVLNISGNGFQ--DYFPGQIVVGM-TELEVLDAFNNNFTGP--LPVEIVSLKNLKHLSFGGNYFS-GEIPESY-SEI 86 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~--~~~~~~~~~~~-~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~-~~~~~~~-~~l 86 (549)
.+.+.+|+..-+.. +-..+.+.+.+ ..|+.|++.+++-.+. +...-.++++++.|.+.+|... +..-..+ ..+
T Consensus 110 ~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C 189 (483)
T KOG4341|consen 110 SCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYC 189 (483)
T ss_pred ccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhc
Confidence 45566666544432 11222222233 4688899988855432 2222357899999998888622 1111111 457
Q ss_pred CCCCEEEccCCC-Cccccchh-ccCCCCCceeecCCccccCccC-CccccCCCCCCEEEccCccCCccCCccc----cCC
Q 046055 87 QSLEYLGLNGIG-LNGTAPVF-LSLLKNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCNISGEIPASL----SQL 159 (549)
Q Consensus 87 ~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~l----~~l 159 (549)
++|++|++..|. ++...... ...+++|++++++++..+.+.- -..+.+++.++.+...+|.-. ..+.+ +.+
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~ 267 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYC 267 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccC
Confidence 889999998864 33333332 3478999999999987776522 223445666777766665321 11111 223
Q ss_pred CCCCeEeccCccccccCC--ccccCCCCCCEEeCCCCcC-ccccCccc-cCCCcCceeecccccC-cccCCccC-CCCCC
Q 046055 160 KLLDALFLQMNKLTGHIH--PELSGLISLTQLDLSLNCL-TGEVPESF-SALKNLSLVQLFKNNL-RGPFPSFV-GDYPN 233 (549)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~-~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~-~~~~~ 233 (549)
.-+..+++..|..-.... ..-..+..|+.++.+++.- .+..-..+ .+.++|+.+-+..|+- ++.....+ .+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 345556655653221111 1123457889999887643 22222222 4679999999999863 22222222 35789
Q ss_pred ccEEEccCccccc--cCCccccCCCCccEEECcCCccc-cc----CCccccCCCCccEEecccccccc-CCCccccCCCC
Q 046055 234 LEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSSNQIE-GK----IPRDLCKGERLKSLILMQNLFSG-PIPEELGACES 305 (549)
Q Consensus 234 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~-~~----~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 305 (549)
|+.+++.++.... .+...-.+++.|+.+.++++... +. ....-.....++.+.++++.... ...+.+..+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 9999999886542 12333356799999999988543 22 12223456788999999987653 33356778899
Q ss_pred CcEEEccCCcCccc--CCccCCCCCCCCEEEeec
Q 046055 306 LTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDH 337 (549)
Q Consensus 306 L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~ 337 (549)
|+.+++-+++-... +.....++|+++...+..
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 99998877754311 222333667776655543
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=3e-05 Score=80.83 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCCCEEEeecCcCccccC--ccccCCCCCCEEEccCceecc-cCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCE
Q 046055 328 PLLKMIELDHNLLSGEIP--ENLSISDSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISL 404 (549)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (549)
.+|+.|++++........ ..-..+|+|++|.+.+-.+.. .......++|+|..||+++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 467777777754331111 111345777777777655532 1233445667777777777766522 55666667766
Q ss_pred EEccCCcccc-cCCcccccCCCCcEEECCCCcCcccc------hhhhhCCCCCCEEECCCCccc
Q 046055 405 INVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEI------PKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 405 L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~------~~~~~~~~~L~~L~l~~n~i~ 461 (549)
|.+.+=.+.. .....+-.+++|+.||+|..+..... .++-..+|+|+.||.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6666555432 11223445666666666665443211 112233455666666655554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=2.5e-05 Score=68.99 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=62.6
Q ss_pred CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc-hhhhhCCCCCCEE
Q 046055 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI-PKAISQLRDLSIL 453 (549)
Q Consensus 375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L 453 (549)
+.+.+.|++.||.+++. .....++.|+.|.|+=|+|... ..+..|+.|++|+|..|.|.+.. ...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44667788888877522 2334677777788877777633 33667777777777777776432 2345677777777
Q ss_pred ECCCCcccccCC-----ccccCCCCCCeEe
Q 046055 454 NLSRNQLTGPIP-----TDMQDMMSLTTLD 478 (549)
Q Consensus 454 ~l~~n~i~~~~~-----~~l~~l~~L~~L~ 478 (549)
.|..|.=.+..+ ..+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777775433222 1344566666664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.001 Score=58.87 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCC--cccccCCcccccCCCCcEEECCCCcCccc-chhhh
Q 046055 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSN--NISGEIPTSISGCISLTTVDFSRNSLSGE-IPKAI 444 (549)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~ 444 (549)
+.........|+.+.+.+..++ . ...+..+++|++|.++.| ++..-+......+++|+++++++|+|... ....+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 4444555667777777777664 1 134556788888888888 55544444445568888888888888732 11234
Q ss_pred hCCCCCCEEECCCCcccccC---CccccCCCCCCeEeCCCCCCc
Q 046055 445 SQLRDLSILNLSRNQLTGPI---PTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 445 ~~~~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~L~l~~n~~~ 485 (549)
..+.+|..|++.+|..+..- ...|.-+++|++||-.+..=.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 56677888888888776421 123555777777765554433
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00013 Score=64.65 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=75.7
Q ss_pred CCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC-CccccCCCCCCeE
Q 046055 399 LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTL 477 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L 477 (549)
+.+.++|+.-||.+.++ .....|+.|++|.|+-|+|+.. ..+..+++|++|+|+.|.|...- ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55678889999988643 3356789999999999999855 44788899999999999997442 2467889999999
Q ss_pred eCCCCCCcccCCCC------CCCCCCCccc
Q 046055 478 DLSYNNLNGEVPSG------GHFPAFDEAS 501 (549)
Q Consensus 478 ~l~~n~~~~~~p~~------~~~~~l~~l~ 501 (549)
.|..|+=.+.-+.. ..+|+|+.++
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999876554432 3467777765
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0019 Score=57.09 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=84.4
Q ss_pred CCEEEccCCcC-CCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC--cCcccchhhhhCCCCCCEEE
Q 046055 378 LNVLSLQNNRF-NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN--SLSGEIPKAISQLRDLSILN 454 (549)
Q Consensus 378 L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--~i~~~~~~~~~~~~~L~~L~ 454 (549)
.+.+.+++|.- .+.+......+..|+.+++.+..++. ...+..+++|+.|.++.| .+....+-....+++|++++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 34445554422 22344555566778888888887752 234677899999999999 55544444556779999999
Q ss_pred CCCCccccc-CCccccCCCCCCeEeCCCCCCcccCCCC-----CCCCCCCccccCCC
Q 046055 455 LSRNQLTGP-IPTDMQDMMSLTTLDLSYNNLNGEVPSG-----GHFPAFDEASFAGN 505 (549)
Q Consensus 455 l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~l~~l~l~~n 505 (549)
+++|+|... ....+..+.+|..|++.+|.... .... ..+++|+.++-.+.
T Consensus 98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 999999842 12345667889999999999885 3322 34667777765544
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00018 Score=73.75 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCCCcEEEccCC-CCcCC-CCccccCCCCcCEEEccC
Q 046055 38 MTELEVLDAFNN-NFTGP-LPVEIVSLKNLKHLSFGG 72 (549)
Q Consensus 38 ~~~L~~L~L~~~-~~~~~-~~~~l~~l~~L~~L~ls~ 72 (549)
++.|+.+.+.++ .++.. .......+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455555555544 22211 112234455555555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.00029 Score=72.20 Aligned_cols=35 Identities=26% Similarity=0.196 Sum_probs=19.8
Q ss_pred CCCccEEEccCcccccc--CCccccCCCCccEEECcC
Q 046055 231 YPNLEVLQVWGNNFTGE--LPENLGRNRKLLLLDVSS 265 (549)
Q Consensus 231 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~ 265 (549)
++.|+.+.+.++.-... .......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 56777777766633212 223344566777777765
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.018 Score=29.96 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=9.7
Q ss_pred cCEEEccCCcceeccCcccc
Q 046055 65 LKHLSFGGNYFSGEIPESYS 84 (549)
Q Consensus 65 L~~L~ls~~~~~~~~~~~~~ 84 (549)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555555555555 4444343
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.95 E-value=0.026 Score=29.36 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=5.0
Q ss_pred CcEEECCCCcCc
Q 046055 426 LTTVDFSRNSLS 437 (549)
Q Consensus 426 L~~L~L~~n~i~ 437 (549)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=0.012 Score=50.06 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=48.8
Q ss_pred CCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCcccc-CCCCCCEEEccCc-cCCccCCccccCCCCCCe
Q 046055 87 QSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG-TLSKLRVLDMASC-NISGEIPASLSQLKLLDA 164 (549)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~ 164 (549)
..++.++-+++.+.....+.+.+++.++.|.+.+|..+.+.-.+.++ -.++|+.|++++| .|+......+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34666666666666666666666777777777665554433222222 2457777777777 455444455556666666
Q ss_pred Eecc
Q 046055 165 LFLQ 168 (549)
Q Consensus 165 L~l~ 168 (549)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 6554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.28 E-value=0.001 Score=66.45 Aligned_cols=181 Identities=23% Similarity=0.285 Sum_probs=105.2
Q ss_pred CCcEEEccCCcCcccCC----ccCCCCCCCCEEEeecCcCccccCc----cccCC-CCCCEEEccCceeccc----CCcc
Q 046055 305 SLTKFRAMKNQLNGTIP----AGIFNLPLLKMIELDHNLLSGEIPE----NLSIS-DSLNQLKVAYNNIAGK----IPPS 371 (549)
Q Consensus 305 ~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~-~~L~~L~l~~n~~~~~----~~~~ 371 (549)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+...... .+... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36777777887764422 3445677888888888887733222 22232 4566677777777633 2334
Q ss_pred cccCCCCCEEEccCCcCCCC----Ccccc----ccCCCCCEEEccCCcccccC----CcccccCCC-CcEEECCCCcCcc
Q 046055 372 IGNLTNLNVLSLQNNRFNGE----LPEEM----FNLKVISLINVSSNNISGEI----PTSISGCIS-LTTVDFSRNSLSG 438 (549)
Q Consensus 372 ~~~~~~L~~L~l~~n~l~~~----~~~~~----~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~L~L~~n~i~~ 438 (549)
+.....++.+++..|.+... ++..+ ....++++|++.+|.++... ...+...++ +..|++.+|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 55567777888887766311 11222 23556777777777665211 113334444 6667777777764
Q ss_pred c----chhhhhCC-CCCCEEECCCCcccccCC----ccccCCCCCCeEeCCCCCCc
Q 046055 439 E----IPKAISQL-RDLSILNLSRNQLTGPIP----TDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 439 ~----~~~~~~~~-~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~ 485 (549)
. ....+..+ ..++.++++.|.|+.... +.+..++.++.+.++.|++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 22334444 566777777777764332 34455667777777777765
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.89 E-value=0.12 Score=24.87 Aligned_cols=11 Identities=55% Similarity=0.754 Sum_probs=3.5
Q ss_pred CcEEECCCCcC
Q 046055 426 LTTVDFSRNSL 436 (549)
Q Consensus 426 L~~L~L~~n~i 436 (549)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=0.023 Score=48.39 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=35.8
Q ss_pred CCEEEeecCcCccccCccccCCCCCCEEEccCceeccc--CCcccccCCCCCEEEccCC-cCCCCCccccccCCCCCEEE
Q 046055 330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK--IPPSIGNLTNLNVLSLQNN-RFNGELPEEMFNLKVISLIN 406 (549)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 406 (549)
++.+|-+++.+..++-+.+..+++++.|.+.+|.-.+. +...-+-.++|+.|++++| +|++..-.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44555555555544444455555555555555432210 0000012345555555555 34433334444555555554
Q ss_pred ccC
Q 046055 407 VSS 409 (549)
Q Consensus 407 l~~ 409 (549)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.57 E-value=0.1 Score=27.76 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=7.4
Q ss_pred CCCcEEECCCCcCccc
Q 046055 424 ISLTTVDFSRNSLSGE 439 (549)
Q Consensus 424 ~~L~~L~L~~n~i~~~ 439 (549)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555543
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.19 E-value=0.0037 Score=62.57 Aligned_cols=182 Identities=24% Similarity=0.189 Sum_probs=102.3
Q ss_pred ccEEEccCCCCCCcCChhhhh---CCCCCcEEEccCCCCcCCCCc----cccCC-CCcCEEEccCCcceec----cCccc
Q 046055 16 LKVLNISGNGFQDYFPGQIVV---GMTELEVLDAFNNNFTGPLPV----EIVSL-KNLKHLSFGGNYFSGE----IPESY 83 (549)
Q Consensus 16 L~~L~Ls~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~----~l~~l-~~L~~L~ls~~~~~~~----~~~~~ 83 (549)
+.++.|.+|.+.+.....+.. ....|+.|++++|.+.+.... .+... ..|++|++..|.+.+. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777765433332222 345667777777776642211 12222 4566666666655432 33445
Q ss_pred cCCCCCCEEEccCCCCccc----cchh----ccCCCCCceeecCCccccCc----cCCccccCCCC-CCEEEccCccCCc
Q 046055 84 SEIQSLEYLGLNGIGLNGT----APVF----LSLLKNLREMYIGYFNTYTG----GIPPEFGTLSK-LRVLDMASCNISG 150 (549)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~----~~~~----~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~-L~~L~l~~~~i~~ 150 (549)
.....++.++++.|.+... .+.. +....++++|+++++. ++. .+...+...+. +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5566777777777665321 1111 2245667777777632 221 11223444444 6668888887764
Q ss_pred c----CCccccCC-CCCCeEeccCccccccCCcc----ccCCCCCCEEeCCCCcCcc
Q 046055 151 E----IPASLSQL-KLLDALFLQMNKLTGHIHPE----LSGLISLTQLDLSLNCLTG 198 (549)
Q Consensus 151 ~----~~~~l~~l-~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~~~~ 198 (549)
. ....+..+ ..+++++++.|.+....... +..++.++++.++.|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 12234444 56788888888877554332 4556788888888887764
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.62 E-value=0.006 Score=52.93 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=44.9
Q ss_pred CCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCcee
Q 046055 37 GMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREM 116 (549)
Q Consensus 37 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 116 (549)
.++..++||++.|++. -+-..|+-++.|..|+++.|.+. ..|..+.+...++++++..|..+ ..|..++..++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4555666666666554 23344555555666666666555 55555555555555555554433 445555566666665
Q ss_pred ecCC
Q 046055 117 YIGY 120 (549)
Q Consensus 117 ~l~~ 120 (549)
+...
T Consensus 117 e~k~ 120 (326)
T KOG0473|consen 117 EQKK 120 (326)
T ss_pred hhcc
Confidence 5544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.14 E-value=0.4 Score=25.94 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=6.1
Q ss_pred CCcEEECCCCcCc
Q 046055 425 SLTTVDFSRNSLS 437 (549)
Q Consensus 425 ~L~~L~L~~n~i~ 437 (549)
+|+.|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.14 E-value=0.4 Score=25.94 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=6.1
Q ss_pred CCcEEECCCCcCc
Q 046055 425 SLTTVDFSRNSLS 437 (549)
Q Consensus 425 ~L~~L~L~~n~i~ 437 (549)
+|+.|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.77 E-value=0.37 Score=26.10 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=8.9
Q ss_pred CCCCEEECCCCccccc
Q 046055 448 RDLSILNLSRNQLTGP 463 (549)
Q Consensus 448 ~~L~~L~l~~n~i~~~ 463 (549)
++|+.|++++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.77 E-value=0.37 Score=26.10 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=8.9
Q ss_pred CCCCEEECCCCccccc
Q 046055 448 RDLSILNLSRNQLTGP 463 (549)
Q Consensus 448 ~~L~~L~l~~n~i~~~ 463 (549)
++|+.|++++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.10 E-value=0.016 Score=50.35 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=47.9
Q ss_pred cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055 349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT 428 (549)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 428 (549)
......+.||++.|++. .....|..++.+.+++++.|.+. ..|..+.....++.++...|... ..|.++...++++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33445555555555554 22233444555566666666654 55556665556666666665554 55556666666666
Q ss_pred EECCCCcCc
Q 046055 429 VDFSRNSLS 437 (549)
Q Consensus 429 L~L~~n~i~ 437 (549)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666543
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=81.53 E-value=0.36 Score=57.29 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=30.8
Q ss_pred eCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCcccc
Q 046055 478 DLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSIYSA 523 (549)
Q Consensus 478 ~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~ 523 (549)
||++|+|..+.+.. ..+++|+.|+|.+|||.|+|++.....|+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 46677777333322 34667788888889999999887655555444
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.12 E-value=1.3 Score=24.58 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=10.7
Q ss_pred CcccEEEccCCCCCCc
Q 046055 14 MSLKVLNISGNGFQDY 29 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~ 29 (549)
++|++|+|++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4677777777776543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.72 E-value=3.5 Score=22.41 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=7.0
Q ss_pred CCCCEEECCCCccc
Q 046055 448 RDLSILNLSRNQLT 461 (549)
Q Consensus 448 ~~L~~L~l~~n~i~ 461 (549)
++|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.35 E-value=4.2 Score=22.07 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=11.2
Q ss_pred CCCCeEeCCCCCCcccCCC
Q 046055 472 MSLTTLDLSYNNLNGEVPS 490 (549)
Q Consensus 472 ~~L~~L~l~~n~~~~~~p~ 490 (549)
++|+.|++++|++. .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35667777777766 4443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.96 E-value=3.3 Score=41.51 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=16.8
Q ss_pred CCCCCEEEccCCcccccCC--cccccCCCCcEEECCCC
Q 046055 399 LKVISLINVSSNNISGEIP--TSISGCISLTTVDFSRN 434 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~L~~n 434 (549)
.+.+..+.+++|++..... ..-...|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455556666665542111 11122355555555555
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.54 E-value=60 Score=32.36 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCcEEECCCCcCcccch---hhhhCCCCCCEEECCCCccccc----CCccccCCCCCCeEeCCCCCC
Q 046055 425 SLTTVDFSRNSLSGEIP---KAISQLRDLSILNLSRNQLTGP----IPTDMQDMMSLTTLDLSYNNL 484 (549)
Q Consensus 425 ~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~ 484 (549)
-+..+.++.|......- ....+-+.+..|++++|..... +|..++...+++.+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 45667777776653221 2234456777888888877532 344445455566666655543
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.67 E-value=9.5 Score=20.48 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=8.8
Q ss_pred CCCCcEEECCCCc
Q 046055 423 CISLTTVDFSRNS 435 (549)
Q Consensus 423 ~~~L~~L~L~~n~ 435 (549)
|++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777774
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.68 E-value=7.9 Score=38.91 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=52.4
Q ss_pred cCCCCcEEECCCCcCcccc--hhhhhCCCCCCEEECCCC--cccccCC-ccccCCCCCCeEeCCCCCCcccCCCC-----
Q 046055 422 GCISLTTVDFSRNSLSGEI--PKAISQLRDLSILNLSRN--QLTGPIP-TDMQDMMSLTTLDLSYNNLNGEVPSG----- 491 (549)
Q Consensus 422 ~~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~l~~n--~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~----- 491 (549)
..+.+..+.|++|++.... ...-...|.|+.|+|++| .+..... ..++ ...|++|-+.+|++.......
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccchhhhHHHHH
Confidence 4567888999999987532 233456799999999999 4432211 1222 345899999999997544432
Q ss_pred ---CCCCCCCccc
Q 046055 492 ---GHFPAFDEAS 501 (549)
Q Consensus 492 ---~~~~~l~~l~ 501 (549)
..||.|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 3577776654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.66 E-value=2.7e+02 Score=28.08 Aligned_cols=230 Identities=17% Similarity=0.016 Sum_probs=104.1
Q ss_pred CcccEEEccCCCCCCcCChhhhhCC--CCCcEEEccCCCCcC---CCCccccCCCCcCEEEccCCccee----ccC----
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGM--TELEVLDAFNNNFTG---PLPVEIVSLKNLKHLSFGGNYFSG----EIP---- 80 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~---~~~~~l~~l~~L~~L~ls~~~~~~----~~~---- 80 (549)
..+.+++|+.|...+.++..+.... ..++.++.+...+.- ..+.....-++++..+++.|.... ..+
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccc
Confidence 3567888888888777776444222 346677777665541 122223455678888887775421 122
Q ss_pred ccccCCCCCCEEEccCCCCccccchhc----cC--CCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCc
Q 046055 81 ESYSEIQSLEYLGLNGIGLNGTAPVFL----SL--LKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPA 154 (549)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 154 (549)
+.|..-.++ +|++..+.....-+..+ .. -+.=-++++..|..-.....+.-..-..++++...+|...+....
T Consensus 294 ~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 294 DTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred cccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 223333556 77776665432211111 00 000112222222211111111212223577777777776654433
Q ss_pred cc--cCCCCCCeEeccCccccccC-Cccc--------cCCCCCCEEeCCCCcCcccc---CccccCCCcCceeecccccC
Q 046055 155 SL--SQLKLLDALFLQMNKLTGHI-HPEL--------SGLISLTQLDLSLNCLTGEV---PESFSALKNLSLVQLFKNNL 220 (549)
Q Consensus 155 ~l--~~l~~L~~L~l~~~~l~~~~-~~~l--------~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~ 220 (549)
.. ..-+..+.+.+....-..+. .... ....-+..+.++.+...... ...+..-+.+..+++++|..
T Consensus 373 vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 373 VGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 32 22344555554433221010 0000 01112455555555544211 11223345677778877766
Q ss_pred cc----cCCccCCCCCCccEEEccCccc
Q 046055 221 RG----PFPSFVGDYPNLEVLQVWGNNF 244 (549)
Q Consensus 221 ~~----~~~~~~~~~~~L~~L~l~~~~~ 244 (549)
.. .++.....-..++.+..+.|..
T Consensus 453 gd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 453 GDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 53 2333333334555555555433
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.86 E-value=48 Score=40.84 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=28.4
Q ss_pred ECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 430 ~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
||++|+|..+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999777888999999999999999886
Done!