Query 046055
Match_columns 549
No_of_seqs 304 out of 3661
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 14:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.9E-61 1E-65 516.3 43.3 504 11-517 148-749 (768)
2 3rgz_A Protein brassinosteroid 100.0 1E-57 3.5E-62 488.9 41.4 494 9-508 121-717 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-55 3.3E-59 462.3 44.7 505 14-520 25-635 (680)
4 3t6q_A CD180 antigen; protein- 100.0 7.4E-55 2.5E-59 457.1 42.5 502 14-520 33-572 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-54 3.9E-59 455.7 34.9 496 14-521 32-571 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.1E-52 3.6E-57 440.7 41.6 477 8-489 51-564 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-51 4.7E-56 438.0 48.6 491 16-511 6-600 (680)
8 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-52 1.8E-56 449.1 36.9 496 4-514 14-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-50 7.6E-55 423.1 35.8 486 15-515 12-541 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 2.1E-49 7E-54 413.0 34.7 496 14-520 28-543 (570)
11 2z63_A TOLL-like receptor 4, v 100.0 3.5E-48 1.2E-52 403.7 36.6 473 9-492 47-538 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-47 8.3E-52 412.8 36.4 480 17-512 7-543 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-47 7.1E-52 395.8 31.7 487 13-515 4-517 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-46 1.8E-50 385.4 26.7 465 14-489 26-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-45 4E-50 379.8 27.7 457 17-516 3-489 (520)
16 4eco_A Uncharacterized protein 100.0 4.5E-46 1.5E-50 389.7 24.8 367 112-488 182-603 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 6.3E-45 2.2E-49 374.4 27.8 439 14-489 21-485 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 7E-44 2.4E-48 376.6 35.8 497 14-521 52-593 (635)
19 4eco_A Uncharacterized protein 100.0 4.4E-45 1.5E-49 382.2 20.8 441 7-463 73-602 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 1.8E-43 6.1E-48 375.5 28.0 457 7-485 315-864 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-42 4.3E-47 360.0 28.1 461 15-518 32-520 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 1.2E-42 4.2E-47 369.1 28.6 459 39-509 323-865 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-41 5.7E-46 351.6 27.1 438 14-489 52-514 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 2E-39 6.7E-44 327.9 27.4 371 136-520 30-420 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 8.3E-38 2.8E-42 330.1 39.7 483 17-513 34-560 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 2.2E-38 7.4E-43 320.3 32.4 364 39-465 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.2E-37 1.8E-41 307.1 25.1 404 38-509 10-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-36 4.4E-41 304.3 24.5 409 12-490 9-434 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 8.6E-36 2.9E-40 302.8 26.1 320 139-461 14-333 (477)
30 1o6v_A Internalin A; bacterial 100.0 8.8E-35 3E-39 293.9 30.6 347 109-487 44-390 (466)
31 1o6v_A Internalin A; bacterial 100.0 3.5E-34 1.2E-38 289.5 32.2 346 85-462 44-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 1.4E-34 4.8E-39 293.8 29.4 350 114-469 14-364 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 5.8E-34 2E-38 281.4 26.9 334 135-511 44-377 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-34 2E-38 285.2 26.8 353 37-490 40-392 (457)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-33 6.3E-38 281.6 28.1 315 10-389 38-352 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 4.2E-38 279.1 24.8 313 160-513 45-357 (390)
37 3oja_B Anopheles plasmodium-re 100.0 8.6E-33 2.9E-37 287.7 27.2 334 135-511 50-383 (597)
38 4fmz_A Internalin; leucine ric 100.0 2.9E-32 9.8E-37 265.0 29.0 306 133-485 41-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-33 6.4E-38 268.2 19.2 258 257-516 51-312 (313)
40 3oja_B Anopheles plasmodium-re 100.0 1E-32 3.5E-37 287.1 25.1 311 184-511 51-361 (597)
41 4fmz_A Internalin; leucine ric 100.0 6.4E-32 2.2E-36 262.6 28.0 308 106-461 39-346 (347)
42 1xku_A Decorin; proteoglycan, 100.0 4.6E-30 1.6E-34 247.4 27.3 288 161-482 32-329 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-30 2E-34 246.8 27.1 267 208-482 54-330 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.8E-34 244.0 29.4 290 136-459 31-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.7E-34 244.2 27.2 290 137-459 34-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-30 4.6E-35 248.4 19.0 251 232-485 50-304 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-33 6.2E-38 284.8 -2.4 350 111-461 3-411 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.3E-33 8E-38 283.9 -3.2 374 87-461 3-440 (461)
49 3ogk_B Coronatine-insensitive 100.0 1.8E-31 6.1E-36 279.0 -3.0 396 85-482 110-548 (592)
50 3zyi_A Leucine-rich repeat-con 100.0 2E-27 6.8E-32 239.0 25.4 232 281-514 76-309 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 2.2E-27 7.4E-32 237.9 24.9 232 281-514 65-298 (440)
52 2z66_A Variable lymphocyte rec 100.0 2.2E-28 7.6E-33 233.0 16.5 240 280-520 28-273 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 2.3E-28 7.9E-33 237.7 13.9 279 207-489 30-318 (353)
54 3ogk_B Coronatine-insensitive 100.0 1.4E-30 4.9E-35 272.1 -3.6 395 61-458 110-548 (592)
55 2z80_A TOLL-like receptor 2, v 100.0 2.1E-27 7.3E-32 230.9 19.0 279 231-512 30-318 (353)
56 2z66_A Variable lymphocyte rec 99.9 7.3E-27 2.5E-31 222.5 20.5 228 209-461 29-261 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-27 2E-31 220.7 19.1 248 257-505 33-284 (285)
58 3zyj_A Leucine-rich repeat-con 99.9 3E-26 1E-30 229.6 25.1 246 210-460 45-291 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-27 1.4E-31 221.6 17.3 248 259-509 14-262 (285)
60 3zyi_A Leucine-rich repeat-con 99.9 4.1E-26 1.4E-30 229.5 25.5 246 211-484 57-302 (452)
61 4fcg_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 219.2 21.0 225 256-485 81-314 (328)
62 4fcg_A Uncharacterized protein 99.9 7.8E-26 2.7E-30 216.7 20.8 234 208-461 81-314 (328)
63 2p1m_B Transport inhibitor res 99.9 7.9E-30 2.7E-34 266.7 -8.3 444 17-485 46-544 (594)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4.1E-32 228.7 5.6 248 256-517 34-284 (317)
65 2p1m_B Transport inhibitor res 99.9 1.4E-29 4.7E-34 264.8 -10.3 433 10-461 62-544 (594)
66 2o6q_A Variable lymphocyte rec 99.9 7.4E-25 2.5E-29 204.3 20.0 207 305-514 17-224 (270)
67 1p9a_G Platelet glycoprotein I 99.9 1.1E-24 3.6E-29 204.8 20.8 208 300-513 6-213 (290)
68 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-27 1.4E-31 224.9 3.8 259 186-482 12-272 (317)
69 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.4E-29 204.3 18.8 216 304-520 28-249 (276)
70 1wwl_A Monocyte differentiatio 99.9 1.1E-26 3.9E-31 221.4 4.9 246 231-507 42-308 (312)
71 1wwl_A Monocyte differentiatio 99.9 1E-26 3.6E-31 221.6 4.0 255 203-486 38-310 (312)
72 3oja_A Leucine-rich immune mol 99.9 9.7E-26 3.3E-30 227.8 11.0 245 231-513 33-287 (487)
73 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-23 9.9E-28 213.7 29.2 261 161-489 41-301 (622)
74 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-23 2.3E-27 211.0 29.3 265 137-469 41-305 (622)
75 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.1E-28 195.8 21.4 211 280-491 28-243 (276)
76 3oja_A Leucine-rich immune mol 99.9 1.2E-24 4E-29 219.8 13.8 220 278-510 32-252 (487)
77 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.2E-27 188.6 23.4 185 304-488 37-221 (270)
78 1p9a_G Platelet glycoprotein I 99.9 6E-22 2.1E-26 186.0 21.4 203 252-485 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.3E-22 7.7E-27 187.6 15.7 204 277-491 38-241 (272)
80 2xwt_C Thyrotropin receptor; s 99.9 3.1E-22 1.1E-26 183.0 15.7 198 305-507 32-238 (239)
81 3m19_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 179.3 18.8 181 304-487 14-194 (251)
82 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.4E-28 204.7 4.5 254 214-487 4-299 (362)
83 3m19_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 181.0 15.8 157 305-461 36-192 (251)
84 3rfs_A Internalin B, repeat mo 99.9 2.6E-21 9E-26 180.3 18.9 228 15-257 20-247 (272)
85 2ca6_A RAN GTPase-activating p 99.9 1.3E-23 4.3E-28 206.9 2.1 189 301-489 91-320 (386)
86 2ast_B S-phase kinase-associat 99.9 8.8E-23 3E-27 197.2 6.7 250 234-491 49-312 (336)
87 4glp_A Monocyte differentiatio 99.9 1E-21 3.5E-26 187.0 13.7 154 326-485 143-307 (310)
88 2ast_B S-phase kinase-associat 99.9 9.4E-23 3.2E-27 197.0 5.5 234 4-242 37-282 (336)
89 3goz_A Leucine-rich repeat-con 99.9 8.9E-23 3E-27 198.7 4.8 247 263-509 5-298 (362)
90 2xwt_C Thyrotropin receptor; s 99.9 3.7E-21 1.3E-25 175.8 15.1 197 281-483 32-237 (239)
91 4glp_A Monocyte differentiatio 99.9 2E-21 6.9E-26 184.9 13.5 201 303-508 90-307 (310)
92 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 181.5 15.3 207 262-486 25-231 (308)
93 2ca6_A RAN GTPase-activating p 99.9 6.4E-23 2.2E-27 201.9 1.6 245 247-511 23-319 (386)
94 1h6u_A Internalin H; cell adhe 99.8 2E-20 6.8E-25 177.5 17.0 195 252-462 37-231 (308)
95 2v9t_B SLIT homolog 2 protein 99.8 1.6E-19 5.4E-24 162.2 14.2 137 377-513 33-170 (220)
96 4ay9_X Follicle-stimulating ho 99.8 4.4E-19 1.5E-23 171.6 17.7 240 235-482 12-256 (350)
97 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4.2E-24 176.2 12.1 181 331-514 21-208 (361)
98 4ay9_X Follicle-stimulating ho 99.8 9.5E-19 3.3E-23 169.3 18.0 241 211-459 12-257 (350)
99 2o6s_A Variable lymphocyte rec 99.8 6.9E-19 2.4E-23 157.0 14.2 175 307-491 10-184 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 8.5E-19 2.9E-23 157.4 14.8 153 331-486 14-167 (220)
101 3e6j_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 156.2 16.1 153 330-486 21-173 (229)
102 2v9t_B SLIT homolog 2 protein 99.8 2.9E-18 9.7E-23 154.0 15.9 134 352-485 32-165 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-18 1.4E-22 152.9 15.8 152 307-461 14-166 (220)
104 2o6s_A Variable lymphocyte rec 99.8 7.2E-18 2.5E-22 150.3 17.0 150 17-195 10-159 (208)
105 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.7E-23 161.8 13.7 173 300-486 42-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 2.8E-18 9.5E-23 166.7 14.7 155 330-484 41-201 (361)
107 1h6t_A Internalin B; cell adhe 99.8 5.6E-18 1.9E-22 159.1 14.9 190 259-464 27-216 (291)
108 3e6j_A Variable lymphocyte rec 99.8 1.9E-17 6.6E-22 149.6 16.9 154 355-512 22-176 (229)
109 3cvr_A Invasion plasmid antige 99.7 2.5E-17 8.7E-22 167.4 18.3 134 257-413 60-193 (571)
110 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.2E-22 147.2 12.7 151 327-485 43-194 (197)
111 3cvr_A Invasion plasmid antige 99.7 3.3E-17 1.1E-21 166.6 17.5 184 233-444 60-250 (571)
112 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.3E-22 146.6 12.5 152 349-507 41-193 (197)
113 4fs7_A Uncharacterized protein 99.7 8.8E-16 3E-20 151.0 24.8 332 54-429 62-393 (394)
114 1m9s_A Internalin B; cell inva 99.7 3.7E-17 1.3E-21 168.2 14.5 150 300-461 61-210 (605)
115 1m9s_A Internalin B; cell inva 99.7 3.7E-17 1.3E-21 168.2 14.2 174 300-487 39-212 (605)
116 4fs7_A Uncharacterized protein 99.7 8.4E-16 2.9E-20 151.2 23.3 312 130-482 65-376 (394)
117 3sb4_A Hypothetical leucine ri 99.7 3.7E-17 1.3E-21 156.7 11.3 264 13-286 48-327 (329)
118 1xeu_A Internalin C; cellular 99.7 4.1E-17 1.4E-21 150.7 10.1 171 302-487 17-187 (263)
119 3sb4_A Hypothetical leucine ri 99.7 8E-17 2.7E-21 154.4 11.8 102 375-478 225-327 (329)
120 1xeu_A Internalin C; cellular 99.7 3.5E-17 1.2E-21 151.1 8.6 170 279-463 18-187 (263)
121 1w8a_A SLIT protein; signaling 99.7 3.3E-16 1.1E-20 137.3 13.4 152 355-509 11-163 (192)
122 2wfh_A SLIT homolog 2 protein 99.7 3E-16 1E-20 137.4 13.0 132 379-514 13-145 (193)
123 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.8E-21 139.7 10.0 174 331-511 11-186 (192)
124 4fdw_A Leucine rich hypothetic 99.7 1.9E-14 6.6E-19 140.6 25.5 266 86-365 112-383 (401)
125 4fdw_A Leucine rich hypothetic 99.7 1.3E-14 4.6E-19 141.8 24.3 265 136-413 113-383 (401)
126 2ell_A Acidic leucine-rich nuc 99.7 4.5E-16 1.5E-20 133.5 12.1 134 351-486 23-161 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 7.6E-16 2.6E-20 129.1 10.4 127 352-480 17-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 130.6 14.4 128 355-486 13-140 (193)
129 1dce_A Protein (RAB geranylger 99.6 1.6E-18 5.4E-23 177.3 -8.1 107 378-489 443-550 (567)
130 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 130.3 11.5 133 327-461 23-160 (168)
131 1dce_A Protein (RAB geranylger 99.6 2.9E-18 9.9E-23 175.4 -7.1 197 277-479 346-567 (567)
132 2o6r_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 127.5 13.6 131 355-488 10-140 (177)
133 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 126.3 10.2 128 328-457 17-149 (149)
134 4gt6_A Cell surface protein; l 99.6 3.2E-13 1.1E-17 132.7 25.8 306 162-482 66-388 (394)
135 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 126.0 13.5 132 378-512 9-141 (177)
136 4gt6_A Cell surface protein; l 99.6 9.5E-13 3.2E-17 129.3 28.0 133 322-461 259-391 (394)
137 4b8c_D Glucose-repressible alc 99.5 1.6E-15 5.3E-20 160.2 4.4 116 299-418 219-334 (727)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.2E-19 125.4 8.7 134 348-486 15-154 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 8E-19 123.6 10.3 133 324-461 15-153 (176)
140 4b8c_D Glucose-repressible alc 99.5 5.3E-15 1.8E-19 156.2 6.5 152 80-242 217-369 (727)
141 1ds9_A Outer arm dynein; leuci 99.5 1.4E-15 4.7E-20 134.2 -3.6 132 347-485 43-185 (198)
142 3g39_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 115.2 11.2 110 377-489 10-119 (170)
143 2r9u_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 118.7 7.8 106 379-487 15-120 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 5E-16 1.7E-20 137.0 -7.4 152 350-508 16-185 (198)
145 3g39_A Variable lymphocyte rec 99.4 6.3E-13 2.2E-17 113.6 11.8 105 354-461 11-115 (170)
146 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 111.9 11.8 104 355-461 15-118 (174)
147 4h09_A Hypothetical leucine ri 99.4 1.1E-10 3.7E-15 114.1 26.5 142 326-472 215-356 (379)
148 4h09_A Hypothetical leucine ri 99.4 1E-10 3.5E-15 114.3 25.3 154 324-482 190-343 (379)
149 3un9_A NLR family member X1; l 99.3 1.1E-13 3.9E-18 133.8 -0.5 86 400-485 155-252 (372)
150 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 133.7 -3.5 158 328-485 101-283 (372)
151 2ifg_A High affinity nerve gro 99.2 2.9E-11 9.8E-16 116.7 10.6 105 379-486 11-117 (347)
152 2ifg_A High affinity nerve gro 99.1 1.7E-10 5.7E-15 111.3 11.4 104 355-461 11-116 (347)
153 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.7E-14 104.9 6.8 156 323-483 167-341 (362)
154 2ra8_A Uncharacterized protein 98.9 2E-09 6.8E-14 103.1 5.9 176 326-506 137-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1E-08 3.4E-13 88.6 3.4 86 399-484 64-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2E-08 6.7E-13 86.7 3.5 112 350-461 34-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 4.5E-08 1.5E-12 82.0 2.3 82 377-458 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.4E-12 78.7 3.0 84 352-435 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 3.7E-07 1.3E-11 82.7 1.7 79 399-478 169-257 (267)
160 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.7E-11 77.9 5.7 79 421-501 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 1.9E-05 6.6E-10 67.4 4.0 111 374-484 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 6.1E-05 2.1E-09 64.3 4.9 111 351-461 40-170 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00022 7.5E-09 56.8 5.1 45 473-517 32-77 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0021 7.2E-08 51.1 6.2 36 425-460 32-67 (130)
165 2lz0_A Uncharacterized protein 73.8 3.5 0.00012 30.4 4.0 45 436-481 8-52 (100)
166 2lz0_A Uncharacterized protein 69.8 12 0.0004 27.5 6.0 36 34-70 15-50 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-61 Score=516.33 Aligned_cols=504 Identities=34% Similarity=0.513 Sum_probs=399.7
Q ss_pred cCCCcccEEEccCCCCCCcCChhh--hhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCC
Q 046055 11 KPKMSLKVLNISGNGFQDYFPGQI--VVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS 88 (549)
Q Consensus 11 ~~~~~L~~L~Ls~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~ 88 (549)
.++++|++|++++|.+.+..+... +.++++|++|++++|.+++..+ +..+++|++|++++|.+.+..|. +.++++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~ 224 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCC
Confidence 566777777777777766544431 2355566666666555554322 24555555555555555544443 555555
Q ss_pred CCEEEccCCCCccccchhccCCCCCceeecCCc---------------------cccCccCCccccCC-CCCCEEEccCc
Q 046055 89 LEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYF---------------------NTYTGGIPPEFGTL-SKLRVLDMASC 146 (549)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------~~~~~~~~~~~~~~-~~L~~L~l~~~ 146 (549)
|++|++++|.+.+..+..++.+++|++|+++++ +.+.+.+|..+... ++|++|++++|
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 555555555555555555555555555555441 33444455555443 67777777777
Q ss_pred cCCccCCccccCCCCCCeEeccCccccccCCcc-ccCCCCCCEEeCCCCcCccccCccccCCC-cCceeecccccCcccC
Q 046055 147 NISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPESFSALK-NLSLVQLFKNNLRGPF 224 (549)
Q Consensus 147 ~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~ 224 (549)
.+++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+..
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 766666666777777777777777766444433 66777777777777777666666666665 7777777777777666
Q ss_pred CccCCC--CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccC
Q 046055 225 PSFVGD--YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA 302 (549)
Q Consensus 225 ~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 302 (549)
+..+.. +++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 666655 778999999999998888999999999999999999999888999999999999999999999888999999
Q ss_pred CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEE
Q 046055 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS 382 (549)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 382 (549)
+++|++|++.+|++.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCccccc-----------------------------------------------------------------
Q 046055 383 LQNNRFNGELPEEMF----------------------------------------------------------------- 397 (549)
Q Consensus 383 l~~n~l~~~~~~~~~----------------------------------------------------------------- 397 (549)
+++|.+.+.+|..+.
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 999998877765432
Q ss_pred -----cCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCC
Q 046055 398 -----NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM 472 (549)
Q Consensus 398 -----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 472 (549)
.+++|+.|++++|++.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 046055 473 SLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCL 517 (549)
Q Consensus 473 ~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~~~ 517 (549)
+|++|++++|++++.+|..+.|.++...++.|||.+|+++...|.
T Consensus 705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp CCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred CCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence 999999999999999999999999999999999999998766664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-57 Score=488.89 Aligned_cols=494 Identities=35% Similarity=0.490 Sum_probs=405.4
Q ss_pred cccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCcc---ccCCCCcCEEEccCCcceeccCccccC
Q 046055 9 LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVE---IVSLKNLKHLSFGGNYFSGEIPESYSE 85 (549)
Q Consensus 9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~---l~~l~~L~~L~ls~~~~~~~~~~~~~~ 85 (549)
.++++++|++|++++|.+.+..+..++..+++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ +..
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 198 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--ccc
Confidence 57889999999999999988788776568999999999999999877766 8899999999999999986554 488
Q ss_pred CCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeE
Q 046055 86 IQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDAL 165 (549)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 165 (549)
+++|++|++++|.+.+..|. ++++++|++|++++ +.+.+..|..++.+++|++|++++|.+++..+.. .+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG-NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS-SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC-CcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 99999999999999987777 99999999999999 7787778888999999999999999887655543 66777777
Q ss_pred eccCccccccCCccccCC-CCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCcc-CCCCCCccEEEccCcc
Q 046055 166 FLQMNKLTGHIHPELSGL-ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSF-VGDYPNLEVLQVWGNN 243 (549)
Q Consensus 166 ~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 243 (549)
++++|.+.+..+..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 777777765555555543 67777777777776666666666777777777777666444433 5556666666666666
Q ss_pred ccccCCccccC---------------------------CCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055 244 FTGELPENLGR---------------------------NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296 (549)
Q Consensus 244 ~~~~~~~~l~~---------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 296 (549)
+++..|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 55444443333 455666777777666667777778888888888888888778
Q ss_pred CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT 376 (549)
Q Consensus 297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 376 (549)
+..+..+++|+.|++.+|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|..++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 88888888888888888888888888888888899999999988888888888889999999999999888888888899
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcc-------------------------------------
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS------------------------------------- 419 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------------------- 419 (549)
+|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 9999999999988888888889999999999999887655543
Q ss_pred ---------------------------------cccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055 420 ---------------------------------ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT 466 (549)
Q Consensus 420 ---------------------------------~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 466 (549)
+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 33357889999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCC
Q 046055 467 DMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNL 508 (549)
Q Consensus 467 ~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~ 508 (549)
.+..+++|+.||+++|++++.+|.. +.+++|+.+++++|+..
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999999999999999999988865 78899999999999765
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-55 Score=462.27 Aligned_cols=505 Identities=21% Similarity=0.190 Sum_probs=305.0
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
+++++|++++|.+.+. +...+..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..+.+|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4566666666665542 322233556666666666666555555555666666666666655533333455666666666
Q ss_pred ccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCcccc--CCCCCCeEeccCcc
Q 046055 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS--QLKLLDALFLQMNK 171 (549)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~--~l~~L~~L~l~~~~ 171 (549)
+++|.+....+..++++++|++|++++ +.+....+..++++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCS-SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCC-CcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 666655555555555666666666655 444444455555555555555555555433333221 23445555554444
Q ss_pred ccccCCc---------------------------------------------------cccCCC--CCCEEeCCCCcCcc
Q 046055 172 LTGHIHP---------------------------------------------------ELSGLI--SLTQLDLSLNCLTG 198 (549)
Q Consensus 172 l~~~~~~---------------------------------------------------~l~~l~--~L~~L~l~~~~~~~ 198 (549)
+.+..+. .+..++ +|++|++++|.+.+
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 4433332 222221 24444444444443
Q ss_pred ccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccc-----cCC----ccccCCCCccEEECcCCccc
Q 046055 199 EVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-----ELP----ENLGRNRKLLLLDVSSNQIE 269 (549)
Q Consensus 199 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~l~~~~~L~~L~l~~~~~~ 269 (549)
..+..+..+++|++|++++|.+.+..+..+..+++|++|+++++...+ .+| ..+..+++|+.|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 333444444444444444444443333333333333333333321110 001 12333444444444444444
Q ss_pred ccCCccccCCCCcc----------------------------EEeccccccccCCCccccCCCCCcEEEccCCcCcccCC
Q 046055 270 GKIPRDLCKGERLK----------------------------SLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIP 321 (549)
Q Consensus 270 ~~~~~~l~~~~~L~----------------------------~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 321 (549)
+..+..+..+++|+ .|++++|.+....+.++..+++|+.|++++|.+.+.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 43333344444444 44444444444445556666666666666666655444
Q ss_pred -ccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceec--ccCCcccccCCCCCEEEccCCcCCCCCcccccc
Q 046055 322 -AGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA--GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN 398 (549)
Q Consensus 322 -~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 398 (549)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+++..+..+..
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 45556666777777777666666666666777777777777665 356777888889999999999888666777888
Q ss_pred CCCCCEEEccCCcccccCC--------cccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccC
Q 046055 399 LKVISLINVSSNNISGEIP--------TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD 470 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 470 (549)
+++|+.|++++|++.+..+ ..+.++++|++|++++|+++...+..|..+++|+.|++++|+++...+..|..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 8999999999998875422 23678899999999999998655667899999999999999999777777889
Q ss_pred CCCCCeEeCCCCCCcccCCCC-C-CCCCCCccccCCCCCCCCCCC-CCCCCCc
Q 046055 471 MMSLTTLDLSYNNLNGEVPSG-G-HFPAFDEASFAGNPNLCLPRN-VTCLPSI 520 (549)
Q Consensus 471 l~~L~~L~l~~n~~~~~~p~~-~-~~~~l~~l~l~~n~~~~~~~~-~~~~~~~ 520 (549)
+++|+.|++++|++.+..|.. + .+++|+.+++++||+.|+|+. .....|+
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 999999999999999766643 2 578999999999999999987 4444443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-55 Score=457.08 Aligned_cols=502 Identities=20% Similarity=0.162 Sum_probs=428.4
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
+++++|++++|.+.+..+..+. ++++|++|++++|++.+..|..|+++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 5789999999998875555544 889999999999998877788899999999999999998877888899999999999
Q ss_pred ccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCC--eEeccCcc
Q 046055 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD--ALFLQMNK 171 (549)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~ 171 (549)
+++|.+....+..++++++|++|++++ +.+.......+..+++|++|++++|.+++..+..+..+++|+ .+++++|.
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 999998887778888999999999988 666654334455588999999999988877777888888888 88888998
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCc--------------------------cccCccccCCC--cCceeecccccCccc
Q 046055 172 LTGHIHPELSGLISLTQLDLSLNCLT--------------------------GEVPESFSALK--NLSLVQLFKNNLRGP 223 (549)
Q Consensus 172 l~~~~~~~l~~l~~L~~L~l~~~~~~--------------------------~~~~~~l~~l~--~L~~L~l~~~~~~~~ 223 (549)
+.+..+..+.. .+|+++++++|... ...+..+.++. +++.+++++|.+.+.
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred cCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 88776666554 57888888876411 01112222222 789999999999988
Q ss_pred CCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC-CccccC
Q 046055 224 FPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI-PEELGA 302 (549)
Q Consensus 224 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~ 302 (549)
.+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.... +..+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 8888999999999999999998 78888999999999999999999877888999999999999999887444 456899
Q ss_pred CCCCcEEEccCCcCcccC--CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc-ccccCCCCC
Q 046055 303 CESLTKFRAMKNQLNGTI--PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP-SIGNLTNLN 379 (549)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~ 379 (549)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 999999999999998655 67788999999999999999988888999999999999999999876554 488999999
Q ss_pred EEEccCCcCCCCCccccccCCCCCEEEccCCccccc---CCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055 380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE---IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
+|++++|.+.+..|..+..+++|+.|++++|++.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 999999999988888999999999999999999752 33568899999999999999998888999999999999999
Q ss_pred CCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 046055 457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSI 520 (549)
Q Consensus 457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 520 (549)
+|++++..+..+..+++| +|++++|++.+.+|.. +.+++|+.+++++||+.|.|+......|+
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 999998999999999999 9999999999877764 66889999999999999998765444333
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-54 Score=455.66 Aligned_cols=496 Identities=20% Similarity=0.215 Sum_probs=414.8
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
+++++|++++|.+.+..+.. +.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 68899999999987754444 44889999999999988877788889999999999999988877788899999999999
Q ss_pred ccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCCC----eEecc
Q 046055 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD----ALFLQ 168 (549)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~ 168 (549)
+++|.+....+..++++++|++|++++ +.+.. .+|..++++++|++|++++|.+++..+..+..+++|+ +++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCS-SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCC-CcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 999988887777888999999999988 55554 5688899999999999999988877777776665554 78999
Q ss_pred CccccccCCccccCCCCCCEEeCCCCcCc-cccCccccCCCcCceeec--------------------------------
Q 046055 169 MNKLTGHIHPELSGLISLTQLDLSLNCLT-GEVPESFSALKNLSLVQL-------------------------------- 215 (549)
Q Consensus 169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l-------------------------------- 215 (549)
+|.+....+..+... +|++|++++|.+. ...+..+..+++++.+.+
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 998887766666555 8999999888765 234445555555555444
Q ss_pred -ccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055 216 -FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG 294 (549)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 294 (549)
..+.+.+..+. +..+++|+.++++++.+. .++ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|....
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCE
T ss_pred cccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCcc
Confidence 33444444444 667899999999999997 455 7888999999999999994 666 45 89999999999995543
Q ss_pred CCCccccCCCCCcEEEccCCcCccc--CCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cc
Q 046055 295 PIPEELGACESLTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PS 371 (549)
Q Consensus 295 ~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 371 (549)
.. .+..+++|+.+++++|.+.+. .+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 33 577899999999999998855 37778899999999999999885 44778899999999999999997776 68
Q ss_pred cccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055 372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450 (549)
Q Consensus 372 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L 450 (549)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 8999999999999999998889999999999999999999987 478889999999999999999998888999999999
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCC-CCCccccCCCCCCCCCCCCCCCCCcc
Q 046055 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP-AFDEASFAGNPNLCLPRNVTCLPSIY 521 (549)
Q Consensus 451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~~~~ 521 (549)
+.|++++|++++..|..+..+++|++|++++|++...++....++ +|+.+++++||+.|.|+......|..
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 999999999998889999999999999999999996666666776 59999999999999998855444443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-52 Score=440.69 Aligned_cols=477 Identities=17% Similarity=0.157 Sum_probs=416.8
Q ss_pred ccccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCC
Q 046055 8 SLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQ 87 (549)
Q Consensus 8 ~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~ 87 (549)
..++++++|++|++++|.+.+..|..+. ++++|++|++++|++++..|..|+++++|++|++++|.+.+..+..+.+++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCccceEEECCCCccceeChhhcc-CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 3578999999999999999886666555 999999999999999988889999999999999999999976678899999
Q ss_pred CCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCC--EEEccCccCCccCCccccCCCCCCeE
Q 046055 88 SLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLR--VLDMASCNISGEIPASLSQLKLLDAL 165 (549)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~i~~~~~~~l~~l~~L~~L 165 (549)
+|++|++++|.+.......+..+++|++|++++ +.+....+..++.+++|+ +|++++|.+++..+..+.. ..|+.+
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L 207 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSL 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-cccccc
Confidence 999999999999885544555599999999998 777777778899999999 9999999999776666544 578888
Q ss_pred eccCcccc--------------------------ccCCccccCCC--CCCEEeCCCCcCccccCccccCCCcCceeeccc
Q 046055 166 FLQMNKLT--------------------------GHIHPELSGLI--SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFK 217 (549)
Q Consensus 166 ~l~~~~l~--------------------------~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 217 (549)
++.++... .+.+..+..+. +|+.+++++|.+.+..+..|..+++|++|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 88776410 11112222222 789999999999988888899999999999999
Q ss_pred ccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCC
Q 046055 218 NNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPI 296 (549)
Q Consensus 218 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 296 (549)
|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....
T Consensus 288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 9998 677788899999999999999997778889999999999999998875544 34888999999999999998765
Q ss_pred --CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCc-cccCCCCCCEEEccCceecccCCcccc
Q 046055 297 --PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPE-NLSISDSLNQLKVAYNNIAGKIPPSIG 373 (549)
Q Consensus 297 --~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~ 373 (549)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 66789999999999999999988888899999999999999999876554 478899999999999999988888999
Q ss_pred cCCCCCEEEccCCcCCCC---CccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055 374 NLTNLNVLSLQNNRFNGE---LPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450 (549)
Q Consensus 374 ~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L 450 (549)
.+++|++|++++|.+.+. .+..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..|..+..+++|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 999999999999998752 23568899999999999999998888999999999999999999999999999999999
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 489 (549)
.|++++|+++...+..+..+++|+.|++++|++....+
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999998888889999999999999999986554
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-51 Score=438.02 Aligned_cols=491 Identities=21% Similarity=0.219 Sum_probs=344.0
Q ss_pred ccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEcc
Q 046055 16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLN 95 (549)
Q Consensus 16 L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~ 95 (549)
-+.++.+++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 6 ~~~~~cs~~~L~~-ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLTQ-VPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCSS-CCSCSC---TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CCeeECCCCCccc-cccccC---CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 3679999999876 676543 799999999999997777789999999999999999998889999999999999999
Q ss_pred CCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcccccc
Q 046055 96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGH 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~ 175 (549)
+|.+....+..++++++|++|++++ +.+....+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCccCccChhhhccCCCCCEEECCC-CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 9999987777899999999999998 677777778899999999999999999988888899999999999999998876
Q ss_pred CCcccc--CCCCCCEEeCCCCcCccccCccccCC---------------------------Cc-----------------
Q 046055 176 IHPELS--GLISLTQLDLSLNCLTGEVPESFSAL---------------------------KN----------------- 209 (549)
Q Consensus 176 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~----------------- 209 (549)
.+..+. .+++|++|++++|.+.+..+..+..+ ++
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 655443 45788888888887765544433322 23
Q ss_pred ---------CceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccc-----cCC--
Q 046055 210 ---------LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG-----KIP-- 273 (549)
Q Consensus 210 ---------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~-- 273 (549)
|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.++++++...+ .+|
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 4444444444444444444445555555555555544444444455555555554432221 011
Q ss_pred --ccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCc----------------------------CcccCCcc
Q 046055 274 --RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ----------------------------LNGTIPAG 323 (549)
Q Consensus 274 --~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------l~~~~~~~ 323 (549)
..+..+++|++|++++|.+.+..+..+..+++|+++++++|. +.+..+..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 134456677777777777776666666666666666665543 22222334
Q ss_pred CCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCC--CCCccccccCC
Q 046055 324 IFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN--GELPEEMFNLK 400 (549)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~ 400 (549)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 4445555555555555543322 34445555555555555555445555555666666666666553 34566777778
Q ss_pred CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccch--------hhhhCCCCCCEEECCCCcccccCCccccCCC
Q 046055 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIP--------KAISQLRDLSILNLSRNQLTGPIPTDMQDMM 472 (549)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 472 (549)
+|+.|++++|++.+..+..|.++++|++|++++|.+++..+ ..+..+++|+.|++++|+++.+.+..|..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 88888888888876666677888888888888888775322 2267778888888888888855556788888
Q ss_pred CCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCC
Q 046055 473 SLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLP 511 (549)
Q Consensus 473 ~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~ 511 (549)
+|+.|++++|++.+.++.. ..+++|+.+++++|.....+
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 8888888888888655543 56788888888888655443
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-52 Score=449.13 Aligned_cols=496 Identities=20% Similarity=0.184 Sum_probs=401.1
Q ss_pred CCccccccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCC-CccccCCCCcCEEEccCCcceeccCcc
Q 046055 4 DNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPL-PVEIVSLKNLKHLSFGGNYFSGEIPES 82 (549)
Q Consensus 4 ~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~ls~~~~~~~~~~~ 82 (549)
.+|.++-...+++++|+|++|.+.+..+..+. .+++|++|++++|.....+ |.+|+++++|++|++++|.+.+..|.+
T Consensus 14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCSSCTTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCCCCCCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 45555555668999999999999886666555 9999999999999555444 788999999999999999999888999
Q ss_pred ccCCCCCCEEEccCCCCccccchh--ccCCCCCceeecCCccccCccC-CccccCCCCCCEEEccCccCCccCCccccCC
Q 046055 83 YSEIQSLEYLGLNGIGLNGTAPVF--LSLLKNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCNISGEIPASLSQL 159 (549)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 159 (549)
|.++++|++|++++|.+.+..+.. ++++++|++|++++ +.+.... +..|+++++|++|++++|.+++..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES-CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC-CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 999999999999999998766554 89999999999998 6665544 4679999999999999999988888888777
Q ss_pred --CCCCeEeccCccccccCCccccCCCC------CCEEeCCCCcCccccCcccc--------------------------
Q 046055 160 --KLLDALFLQMNKLTGHIHPELSGLIS------LTQLDLSLNCLTGEVPESFS-------------------------- 205 (549)
Q Consensus 160 --~~L~~L~l~~~~l~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~l~-------------------------- 205 (549)
++|+.|+++.|.+....+..+..+++ |++|++++|.+....+..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999999999998777666665554 99999999976543332222
Q ss_pred ----------C--CCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC
Q 046055 206 ----------A--LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP 273 (549)
Q Consensus 206 ----------~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 273 (549)
+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1 2567888888887777777777778888888888888877667777778888888888888876667
Q ss_pred ccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCC
Q 046055 274 RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS 353 (549)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 353 (549)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ + ..+++|+.+++++|.+... |. ....
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~~l-~~---~~~~ 402 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLVTL-PK---INLT 402 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCCCC-CC---CCTT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcccc-cc---cccc
Confidence 777778888888888888777766777778888888888887762 2 2367788888888887733 32 2467
Q ss_pred CCEEEccCceecccCC-cccccCCCCCEEEccCCcCCCCCcc-ccccCCCCCEEEccCCccc-----ccCCcccccCCCC
Q 046055 354 LNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNGELPE-EMFNLKVISLINVSSNNIS-----GEIPTSISGCISL 426 (549)
Q Consensus 354 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L 426 (549)
++.|++++|++.+... ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+. +..+..|.++++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 8888888888875322 2355789999999999999754333 4556899999999999986 3344668899999
Q ss_pred cEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCC
Q 046055 427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNP 506 (549)
Q Consensus 427 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~ 506 (549)
++|+|++|.+++..+..+..+++|+.|++++|+++...+..+. ++|+.|++++|++.+.+|.. +++|+.+++++||
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np 558 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK 558 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence 9999999999988888899999999999999999977766665 89999999999999888854 7799999999999
Q ss_pred CCCCCCCC
Q 046055 507 NLCLPRNV 514 (549)
Q Consensus 507 ~~~~~~~~ 514 (549)
+.|.|+..
T Consensus 559 ~~C~c~~~ 566 (844)
T 3j0a_A 559 FICECELS 566 (844)
T ss_dssp CCCSSSCC
T ss_pred cccccccH
Confidence 99998764
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-50 Score=423.06 Aligned_cols=486 Identities=18% Similarity=0.184 Sum_probs=418.3
Q ss_pred cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEc
Q 046055 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL 94 (549)
Q Consensus 15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l 94 (549)
.-++++.+++.++. +|..+. +++++|++++|++++..+..|+++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 12 ~~~~~~c~~~~l~~-ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 12 PNITYQCMDQKLSK-VPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTTEEECTTSCCSS-CCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEccCCCccc-CCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 34689999999976 776554 79999999999999877889999999999999999999888899999999999999
Q ss_pred cCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCc-cCCccccCCCCCCeEeccCcccc
Q 046055 95 NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLT 173 (549)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~l~ 173 (549)
++|.+....|..++++++|++|++++ +.+....+..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhcCCcccCCEEEccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 99999998899999999999999998 77776666789999999999999999986 56889999999999999999999
Q ss_pred ccCCccccCCCCCC----EEeCCCCcCccccCccccCCCcCceeecccccCc-ccCCccCCCCCCccEEEc---------
Q 046055 174 GHIHPELSGLISLT----QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR-GPFPSFVGDYPNLEVLQV--------- 239 (549)
Q Consensus 174 ~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l--------- 239 (549)
+..+..+..+.+|+ ++++++|.+....+..+... +|+.+++++|.+. ...+..+..++.++.+++
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 88777777666554 89999999987666666555 8999999999875 233444455555555544
Q ss_pred ------------------------cCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccC
Q 046055 240 ------------------------WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP 295 (549)
Q Consensus 240 ------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 295 (549)
..+.+.+..+. +..+++|+.++++++.+.. ++ .+..+++|++|++++|.+. .
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~ 321 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-Q 321 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-S
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-c
Confidence 44555555555 7888999999999999974 44 7888899999999999995 4
Q ss_pred CCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcccc--CccccCCCCCCEEEccCceecccCCcccc
Q 046055 296 IPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEI--PENLSISDSLNQLKVAYNNIAGKIPPSIG 373 (549)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 373 (549)
.+ .+ .+++|+++++.+|+..+.. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ .+..+.
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence 45 45 9999999999999665444 5668999999999999998663 6778899999999999999984 568899
Q ss_pred cCCCCCEEEccCCcCCCCCc-cccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcc-cchhhhhCCCCCC
Q 046055 374 NLTNLNVLSLQNNRFNGELP-EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG-EIPKAISQLRDLS 451 (549)
Q Consensus 374 ~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~L~ 451 (549)
.+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 99999999999999987766 678899999999999999998889999999999999999999987 4788899999999
Q ss_pred EEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCC
Q 046055 452 ILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVT 515 (549)
Q Consensus 452 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~ 515 (549)
.|++++|++++..+..+..+++|++|++++|++.+.+|. ...+++|+.+++++|+....|....
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~ 541 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGG
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHh
Confidence 999999999988899999999999999999999988665 4778999999999999887666533
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-49 Score=413.05 Aligned_cols=496 Identities=20% Similarity=0.221 Sum_probs=382.3
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
+++++|++++|.+.+..+..+ ..+++|++|++++|++++..+..|+++++|++|++++|.+.+..|.+|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT-TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHh-hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 467788888887776444433 3778888888888877766666777788888888888877766667777888888888
Q ss_pred ccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCC----CeEecc
Q 046055 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLL----DALFLQ 168 (549)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~ 168 (549)
+++|.+....+..++++++|++|++++ +.+.. .+|..++++++|++|++++|.+++..+..+..+++| +.++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCC-CccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 888777766555677788888888877 44544 457777778888888888887776666666666666 677787
Q ss_pred CccccccCCccccCCCCCCEEeCCCCcCcc-ccCccccCCCcCceeecccccC------cccCCccCCCCC--CccEEEc
Q 046055 169 MNKLTGHIHPELSGLISLTQLDLSLNCLTG-EVPESFSALKNLSLVQLFKNNL------RGPFPSFVGDYP--NLEVLQV 239 (549)
Q Consensus 169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~~--~L~~L~l 239 (549)
+|.+....+..+... +|++|++++|.... ..+..+..+++++...+....+ .......+..++ .++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 777776666666555 67777777764321 2233444555555444332111 111111122222 3567777
Q ss_pred cCc-cccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc
Q 046055 240 WGN-NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG 318 (549)
Q Consensus 240 ~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 318 (549)
.++ .+.+..+..+..+++|+.+++++|.+. .++..+..+ +|++|++++|.+... +. ..+++|+.+++.+|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccc
Confidence 777 666677788888999999999999988 567777777 999999999998843 32 578899999999998876
Q ss_pred cCCccCCCCCCCCEEEeecCcCcccc--CccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCc-cc
Q 046055 319 TIPAGIFNLPLLKMIELDHNLLSGEI--PENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELP-EE 395 (549)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 395 (549)
..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 5554 67899999999999988654 56678899999999999999865544 8899999999999999986655 56
Q ss_pred cccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCc-ccchhhhhCCCCCCEEECCCCcccccCCccccCCCCC
Q 046055 396 MFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS-GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL 474 (549)
Q Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 474 (549)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 889999999999999999888889999999999999999997 4678889999999999999999998889999999999
Q ss_pred CeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 046055 475 TTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSI 520 (549)
Q Consensus 475 ~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 520 (549)
++|++++|++.+.+|.. ..+++|+.+++++||+.|.|+...+.+.|
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~w 543 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHH
Confidence 99999999999877753 68899999999999999999887766333
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-48 Score=403.73 Aligned_cols=473 Identities=18% Similarity=0.147 Sum_probs=395.4
Q ss_pred cccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCC
Q 046055 9 LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS 88 (549)
Q Consensus 9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~ 88 (549)
.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 47889999999999999987444 44559999999999999999777789999999999999999998655557999999
Q ss_pred CCEEEccCCCCcc-ccchhccCCCCCceeecCCccccCccCCccccCCCCC----CEEEccCccCCccCCccccCCCCCC
Q 046055 89 LEYLGLNGIGLNG-TAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL----RVLDMASCNISGEIPASLSQLKLLD 163 (549)
Q Consensus 89 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~i~~~~~~~l~~l~~L~ 163 (549)
|++|++++|.+.. ..|..++++++|++|++++ +.+....+..++.+++| +.+++++|.+++..+..+... +|+
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~ 203 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence 9999999999887 4689999999999999998 77777777778888888 899999999998777777665 799
Q ss_pred eEeccCccccc-cCCccccCCCCCCEEeCCCCc------CccccCccccCCCc--Cceeecccc-cCcccCCccCCCCCC
Q 046055 164 ALFLQMNKLTG-HIHPELSGLISLTQLDLSLNC------LTGEVPESFSALKN--LSLVQLFKN-NLRGPFPSFVGDYPN 233 (549)
Q Consensus 164 ~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~l~~l~~--L~~L~l~~~-~~~~~~~~~~~~~~~ 233 (549)
.+++++|.... ..+..+..+++++..++.... +.......+.++.+ ++.+.+..+ .+.+..+..+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 99998874331 122345566677666554322 12222333444433 456666666 556677778888999
Q ss_pred ccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccC
Q 046055 234 LEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313 (549)
Q Consensus 234 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 313 (549)
|++|++++|.+. .+|..+..+ +|+.|++++|.+. .++. ..+++|+.|++.+|.+....+. ..+++|++|++++
T Consensus 284 L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 284 VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred ccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 999999999998 678778888 9999999999988 4443 5778999999999988765443 7889999999999
Q ss_pred CcCcccC--CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cccccCCCCCEEEccCCcCCC
Q 046055 314 NQLNGTI--PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNG 390 (549)
Q Consensus 314 ~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~ 390 (549)
|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 9987543 56777899999999999999876655 8899999999999999987655 578899999999999999988
Q ss_pred CCccccccCCCCCEEEccCCccc-ccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055 391 ELPEEMFNLKVISLINVSSNNIS-GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ 469 (549)
Q Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 469 (549)
..|..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+.
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 88889999999999999999997 46888999999999999999999988899999999999999999999988888899
Q ss_pred CCCCCCeEeCCCCCCcccCCCCC
Q 046055 470 DMMSLTTLDLSYNNLNGEVPSGG 492 (549)
Q Consensus 470 ~l~~L~~L~l~~n~~~~~~p~~~ 492 (549)
.+++|+.|++++|++.+..|...
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTTTTH
T ss_pred cccCCcEEEecCCcccCCCcchH
Confidence 99999999999999998877653
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-47 Score=412.77 Aligned_cols=480 Identities=17% Similarity=0.158 Sum_probs=399.7
Q ss_pred cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceec-cCccccCCCCCCEEEcc
Q 046055 17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE-IPESYSEIQSLEYLGLN 95 (549)
Q Consensus 17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~~~~l~~L~~L~l~ 95 (549)
++.+.++++++. +|. ..+++++|+|++|.+++..+.+|.++++|++|++++|...+. .|.+|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 578889999876 665 347999999999999988889999999999999999955434 48899999999999999
Q ss_pred CCCCccccchhccCCCCCceeecCCccccCccCCcc--ccCCCCCCEEEccCccCCccCC-ccccCCCCCCeEeccCccc
Q 046055 96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE--FGTLSKLRVLDMASCNISGEIP-ASLSQLKLLDALFLQMNKL 172 (549)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~l 172 (549)
+|.+....|..++++++|++|++++ +.+.+..+.. ++++++|++|++++|.+++..+ ..+.++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYF-CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTT-CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcC-CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 9999999999999999999999999 6776655554 8999999999999999986554 5789999999999999999
Q ss_pred cccCCccccCC--CCCCEEeCCCCcCccccCccccCCCc------CceeecccccCcccCCccCC---------------
Q 046055 173 TGHIHPELSGL--ISLTQLDLSLNCLTGEVPESFSALKN------LSLVQLFKNNLRGPFPSFVG--------------- 229 (549)
Q Consensus 173 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~--------------- 229 (549)
....+..+..+ ++|+.|++++|.+....+..+..+.+ |+.|++++|.+....+..+.
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 98888888777 89999999999998777766666555 99999999976543332221
Q ss_pred ---------------------C--CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055 230 ---------------------D--YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI 286 (549)
Q Consensus 230 ---------------------~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 286 (549)
. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 1 26788999999988877778888889999999999988877777888888999999
Q ss_pred ccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecc
Q 046055 287 LMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG 366 (549)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 366 (549)
+++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. ..+++|+.|++++|++.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~- 394 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV- 394 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-
Confidence 999988887788888899999999999988766666788889999999999988743 23678899999999888
Q ss_pred cCCcccccCCCCCEEEccCCcCCCCC-ccccccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECCCCcCc-----cc
Q 046055 367 KIPPSIGNLTNLNVLSLQNNRFNGEL-PEEMFNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFSRNSLS-----GE 439 (549)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~-----~~ 439 (549)
.+|.. ..+++.|++++|.+.+.. +..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+. +.
T Consensus 395 ~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 395 TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence 44433 467899999999987432 23355899999999999999854433 4566899999999999997 33
Q ss_pred chhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCC
Q 046055 440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPR 512 (549)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~ 512 (549)
.+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++.+.+|.. ..++|+.+++++|.....++
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNP 543 (844)
T ss_dssp CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC-CCSCCCEEEEEEECCCCCCS
T ss_pred chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh-hhccccEEECCCCcCCCCCh
Confidence 4566888999999999999999888889999999999999999999655544 34899999999998776543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-47 Score=395.84 Aligned_cols=487 Identities=18% Similarity=0.201 Sum_probs=400.0
Q ss_pred CCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEE
Q 046055 13 KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYL 92 (549)
Q Consensus 13 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L 92 (549)
|+...+.+.+++.++. +|..++ ++|++|++++|++++..+..|.++++|++|++++|.+.+..|.+|.++++|++|
T Consensus 4 C~~~~~c~~~~~~l~~-ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS-IPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCSS-CCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCcccc-ccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 3445567888888875 676554 799999999999998778899999999999999999998888899999999999
Q ss_pred EccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCcc-CCccCCccccCCCCCCeEeccCc
Q 046055 93 GLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCN-ISGEIPASLSQLKLLDALFLQMN 170 (549)
Q Consensus 93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~ 170 (549)
++++|.+....+..++++++|++|++++ +.+.. ..+..++.+++|++|++++|. ++...+..+.++++|++|++++|
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCC-CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 9999999988888899999999999998 66654 456789999999999999998 44444568999999999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccC---CccCCCCCCccEEEccCcccccc
Q 046055 171 KLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPF---PSFVGDYPNLEVLQVWGNNFTGE 247 (549)
Q Consensus 171 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~ 247 (549)
.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|++.+.. ......+++|+.|++++|.+++.
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 999888889999999999999999876443334456899999999999988632 22234578999999999988753
Q ss_pred CC----ccccCCCCccEEECcCCcccccC------CccccCCCCccEEeccccccccCC-----CccccCCCCCcEEEcc
Q 046055 248 LP----ENLGRNRKLLLLDVSSNQIEGKI------PRDLCKGERLKSLILMQNLFSGPI-----PEELGACESLTKFRAM 312 (549)
Q Consensus 248 ~~----~~l~~~~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~ 312 (549)
.+ ..+..+++++.+++++|.+.+.. ...+..+++++.+.+.++.+.... ...+...++++.+++.
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 33 34466789999999999876431 123456788999999888765321 1122345789999999
Q ss_pred CCcCcccCCccC-CCCCCCCEEEeecCcCccccC---ccccCCCCCCEEEccCceecccCC--cccccCCCCCEEEccCC
Q 046055 313 KNQLNGTIPAGI-FNLPLLKMIELDHNLLSGEIP---ENLSISDSLNQLKVAYNNIAGKIP--PSIGNLTNLNVLSLQNN 386 (549)
Q Consensus 313 ~~~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n 386 (549)
+|.+. .+|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 319 ~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 99987 677666 479999999999999987653 336778999999999999985432 45788999999999999
Q ss_pred cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055 387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT 466 (549)
Q Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 466 (549)
.++ .+|..+..+++|+.|++++|++. .++..+ .++|++|++++|++++. ...+++|++|++++|+++ .+|.
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC
T ss_pred CCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC
Confidence 998 78888889999999999999987 344433 26999999999999864 257899999999999999 5554
Q ss_pred cccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCC
Q 046055 467 DMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVT 515 (549)
Q Consensus 467 ~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~ 515 (549)
...+++|++|++++|++.+.+|. .+.+++|+.+++++||+.|.|+...
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence 46789999999999999988876 4789999999999999999987433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-46 Score=385.36 Aligned_cols=465 Identities=19% Similarity=0.165 Sum_probs=383.0
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
++|++|++++|.+.+..+..+. .+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 6899999999999876666554 999999999999999987788999999999999999999976667799999999999
Q ss_pred ccCCCCccc-cchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccc
Q 046055 94 LNGIGLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKL 172 (549)
Q Consensus 94 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l 172 (549)
+++|.+... .+..++++++|++|+++++.......+..+.++++|++|++++|.+++..+..+..+++|++|++..|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999998863 5678999999999999983334444456899999999999999999988999999999999999999988
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccc--C-ccccCCCcCceeecccccCcccC----CccCCCCCCccEEEccCcccc
Q 046055 173 TGHIHPELSGLISLTQLDLSLNCLTGEV--P-ESFSALKNLSLVQLFKNNLRGPF----PSFVGDYPNLEVLQVWGNNFT 245 (549)
Q Consensus 173 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 245 (549)
.......+..+++|++|++++|.+.+.. + .....+++|+.+++.++.+.+.. +..+..+++++.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 7554444567899999999999987542 1 22345789999999999876532 233456789999999999876
Q ss_pred ccC------CccccCCCCccEEECcCCcccccC-----CccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCC
Q 046055 246 GEL------PENLGRNRKLLLLDVSSNQIEGKI-----PRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314 (549)
Q Consensus 246 ~~~------~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (549)
+.. ...+..+++++.+++.++.+.... +......++|+.|++++|.+.......+..+++|++|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 421 123466789999999988765321 111233578999999999987543333467999999999999
Q ss_pred cCcccCC---ccCCCCCCCCEEEeecCcCccccC--ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCC
Q 046055 315 QLNGTIP---AGIFNLPLLKMIELDHNLLSGEIP--ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN 389 (549)
Q Consensus 315 ~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 389 (549)
++.+..+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 9987653 346788999999999999986543 45788999999999999999 67888889999999999999997
Q ss_pred CCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055 390 GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ 469 (549)
Q Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 469 (549)
.+|..+ .++|+.|++++|++.+.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..+..+.
T Consensus 424 -~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 424 -VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp -CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred -cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 555444 268999999999998542 57899999999999998 5555 46789999999999999988888899
Q ss_pred CCCCCCeEeCCCCCCcccCC
Q 046055 470 DMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 470 ~l~~L~~L~l~~n~~~~~~p 489 (549)
.+++|+.|++++|++.+..|
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHH
T ss_pred cCcccCEEEecCCCccCCCc
Confidence 99999999999999987665
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=379.80 Aligned_cols=457 Identities=19% Similarity=0.238 Sum_probs=324.1
Q ss_pred cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055 17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG 96 (549)
Q Consensus 17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (549)
++|+++++.+++ +|..++ ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccc-cccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578999999875 676554 7899999999999876667888999999999999998877788889999999999999
Q ss_pred CCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCC--CeEeccCccc-
Q 046055 97 IGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLL--DALFLQMNKL- 172 (549)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~l- 172 (549)
|.+.. .|.. .+++|++|++++ +.+.. ..|..++.+++|++|++++|.+++ ..+..+++| +.|++++|.+
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCS-SCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred Cceee-cCcc--ccCCccEEeccC-CccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 88874 3433 677788888877 55554 456777777777777777777764 334555555 6777766666
Q ss_pred -cccCCccccCCC-CCCEEeCCCCcCcccc-CccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCcc------
Q 046055 173 -TGHIHPELSGLI-SLTQLDLSLNCLTGEV-PESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN------ 243 (549)
Q Consensus 173 -~~~~~~~l~~l~-~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------ 243 (549)
....+..+..+. ....+++++|.+.+.. +..+..+ ++|+.+++++|.
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l------------------------~~L~~L~l~~n~~~~~~~ 207 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV------------------------ANLELSNIKCVLEDNKCS 207 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTC------------------------SEEEECCEEECCSTTTTH
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcc------------------------cceeeccccccccccccc
Confidence 434444444332 1223344444433221 1233344 444444444443
Q ss_pred -ccccCCccccCCCCccEEECcCCcccccCCccc---cCCCCccEEeccccccccCCCccc-----cCCCCCcEEEccCC
Q 046055 244 -FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL---CKGERLKSLILMQNLFSGPIPEEL-----GACESLTKFRAMKN 314 (549)
Q Consensus 244 -~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~ 314 (549)
+.+..+ .+..+++|+.++++++.+.+.....+ ...++|++|++++|.+.+..+..+ ..+++|+.+++.+|
T Consensus 208 ~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 286 (520)
T 2z7x_B 208 YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286 (520)
T ss_dssp HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence 332222 34555555555555555442211111 112466666666666665555555 67777777787777
Q ss_pred cCcccCC-ccCCCC---CCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC
Q 046055 315 QLNGTIP-AGIFNL---PLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390 (549)
Q Consensus 315 ~l~~~~~-~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 390 (549)
.+ .+| ..+..+ ++|+.|++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 287 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 287 VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred ce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence 76 344 233322 57899999999876442 12577899999999999998788888999999999999999985
Q ss_pred --CCccccccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055 391 --ELPEEMFNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467 (549)
Q Consensus 391 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 467 (549)
.+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..
T Consensus 363 l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~ 439 (520)
T 2z7x_B 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ 439 (520)
T ss_dssp HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGG
T ss_pred cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchh
Confidence 4557788999999999999999874554 578889999999999999877666554 79999999999999 67777
Q ss_pred ccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCCC
Q 046055 468 MQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVTC 516 (549)
Q Consensus 468 l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~~ 516 (549)
+..+++|++|++++|++....+. ...+++|+.+++++||+.|.|+..+.
T Consensus 440 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 77999999999999999955444 56789999999999999999876544
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-46 Score=389.71 Aligned_cols=367 Identities=22% Similarity=0.283 Sum_probs=296.5
Q ss_pred CCceeecCC-ccccCccCCccccCCCCCCEEEccCccCCcc-----------------CCcccc--CCCCCCeEeccCcc
Q 046055 112 NLREMYIGY-FNTYTGGIPPEFGTLSKLRVLDMASCNISGE-----------------IPASLS--QLKLLDALFLQMNK 171 (549)
Q Consensus 112 ~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-----------------~~~~l~--~l~~L~~L~l~~~~ 171 (549)
.++.+.+.. ++.+++ +|..++++++|++|++++|.+++. .|..+. ++++|++|++++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 344444433 356666 888899999999999999999875 888888 99999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCc-Ccc-ccCccccCC------CcCceeecccccCcccCCc--cCCCCCCccEEEccC
Q 046055 172 LTGHIHPELSGLISLTQLDLSLNC-LTG-EVPESFSAL------KNLSLVQLFKNNLRGPFPS--FVGDYPNLEVLQVWG 241 (549)
Q Consensus 172 l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~ 241 (549)
+.+..+..+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 888888889999999999999998 876 677766665 89999999999998 7777 788899999999999
Q ss_pred ccccccCCccccCCCCccEEECcCCcccccCCccccCCCC-ccEEeccccccccCCCccccCCC--CCcEEEccCCcCcc
Q 046055 242 NNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER-LKSLILMQNLFSGPIPEELGACE--SLTKFRAMKNQLNG 318 (549)
Q Consensus 242 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~ 318 (549)
|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+.+
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 99987788 7888899999999999988 67777888888 999999999888 4555665544 88999999999888
Q ss_pred cCCccCC-------CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccC-------CCCCEEEcc
Q 046055 319 TIPAGIF-------NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNL-------TNLNVLSLQ 384 (549)
Q Consensus 319 ~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~L~~L~l~ 384 (549)
..|..+. .+++|++|++++|.+....+..+..+++|++|++++|.+....+..+... ++|++|+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 7777777 77789999999998886655556668889999999998883333333333 288999999
Q ss_pred CCcCCCCCccccc--cCCCCCEEEccCCcccccCCcccccCCCCcEEEC------CCCcCcccchhhhhCCCCCCEEECC
Q 046055 385 NNRFNGELPEEMF--NLKVISLINVSSNNISGEIPTSISGCISLTTVDF------SRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 385 ~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L------~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
+|.++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|++|++ ++|.+.+.+|..+..+++|+.|+++
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 99888 7777776 88899999999998886 7788888889999988 4566777788888888888888888
Q ss_pred CCcccccCCccccCCCCCCeEeCCCCCCcccC
Q 046055 457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEV 488 (549)
Q Consensus 457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 488 (549)
+|+++ .+|..+. ++|+.|++++|++....
T Consensus 575 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 575 SNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 88885 5565554 68888888888877433
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-45 Score=374.36 Aligned_cols=439 Identities=16% Similarity=0.145 Sum_probs=317.5
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
++|++|++++|.+.+..+.. +..+++|++|++++|++++..|..|+++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 79999999999998755454 449999999999999999877889999999999999999998 56655 899999999
Q ss_pred ccCCCCcc-ccchhccCCCCCceeecCCccccCccCCccccCCCCC--CEEEccCccC--CccCCccccCCC-CCCeEec
Q 046055 94 LNGIGLNG-TAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL--RVLDMASCNI--SGEIPASLSQLK-LLDALFL 167 (549)
Q Consensus 94 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~~l~~l~-~L~~L~l 167 (549)
+++|.+.. ..|..++++++|++|++++ +.+.. ..+..+++| ++|++++|.+ .+..+..+..++ +...+++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 99999987 4678999999999999998 66654 356777888 9999999998 667777776665 2335667
Q ss_pred cCcccccc-CCccccCCCCCCEEeCCCCc-------CccccCccccCCCcCceeecccccCcccCCccCC---CCCCccE
Q 046055 168 QMNKLTGH-IHPELSGLISLTQLDLSLNC-------LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVG---DYPNLEV 236 (549)
Q Consensus 168 ~~~~l~~~-~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~ 236 (549)
.+|.+.+. ....+..+++|+.+++++|. +.+..+ .+..+++|+.+++.++.+.+.....+. ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 77766543 33457788999999999886 443333 566777778887777765532111100 1346777
Q ss_pred EEccCccccccCCccc-----cCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055 237 LQVWGNNFTGELPENL-----GRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310 (549)
Q Consensus 237 L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 310 (549)
|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+... ....+++.|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------------~~~~~L~~L~ 308 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------------FSNMNIKNFT 308 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------HHTCCCSEEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc---------------------cccCceeEEE
Confidence 7777777665566655 5566666666666655 222 222221 0002344444
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecc--cCCcccccCCCCCEEEccCCcC
Q 046055 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG--KIPPSIGNLTNLNVLSLQNNRF 388 (549)
Q Consensus 311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l 388 (549)
+++|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 4444443211 01356677777777777776666667777777777777777764 3445677788888888888888
Q ss_pred CCCCccc-cccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055 389 NGELPEE-MFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467 (549)
Q Consensus 389 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 467 (549)
.+.+|.. +..+++|+.|++++|++.+..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~ 463 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGI 463 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHH
Confidence 7645543 67788888888888888766665543 68999999999988 66766678899999999999998544445
Q ss_pred ccCCCCCCeEeCCCCCCcccCC
Q 046055 468 MQDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 468 l~~l~~L~~L~l~~n~~~~~~p 489 (549)
+..+++|++|++++|++.+..+
T Consensus 464 ~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred hccCCcccEEECcCCCCcccCC
Confidence 8888999999999999875433
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-44 Score=376.55 Aligned_cols=497 Identities=20% Similarity=0.188 Sum_probs=359.9
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
+++++|||++|.+++ ++...|.++++|++|+|++|++++..+.+|+++++|++|++++|.+.+..+.+|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 367888888888776 4433444778888888888888765566778888888888888887755556778888888888
Q ss_pred ccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCC----CeEecc
Q 046055 94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLL----DALFLQ 168 (549)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~ 168 (549)
+++|.+....+..++++++|++|++++ +.+.. ..|..++.+++|++|++++|.+++..+..+..++++ ..++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 888877776666777888888888877 44433 456677777888888888887776666655544333 356666
Q ss_pred CccccccCCccccCCCCCCEEeCCCCcCcc-ccCccccCCCcCceeec------------------------------cc
Q 046055 169 MNKLTGHIHPELSGLISLTQLDLSLNCLTG-EVPESFSALKNLSLVQL------------------------------FK 217 (549)
Q Consensus 169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l------------------------------~~ 217 (549)
.|.+..+.+..+.. ..++.+++.+|.... ..+..+.++..++...+ ..
T Consensus 210 ~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 66666544433332 244555555543221 11112222333332222 11
Q ss_pred ccCc---ccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055 218 NNLR---GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG 294 (549)
Q Consensus 218 ~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 294 (549)
+... ......+....+++.+.+.++.+... ..+.....++.+++.++.+..... ..+..++.+.+..+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC
Confidence 1111 01122233456677777777766532 235566788888888887764432 345778888888877654
Q ss_pred CCCccccCCCCCcEEEccCCcCcc--cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccC-Ccc
Q 046055 295 PIPEELGACESLTKFRAMKNQLNG--TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKI-PPS 371 (549)
Q Consensus 295 ~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~ 371 (549)
.. ....+++++.++++.|.+.. ..+.......+|+.+++..+..... +..+..+++++.+++.++...... ...
T Consensus 364 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 364 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp BC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred Cc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccc
Confidence 32 34578899999999998753 3445556788999999999887744 445778899999999998876554 356
Q ss_pred cccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccc-ccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055 372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS-GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450 (549)
Q Consensus 372 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L 450 (549)
+..+++++.+++++|.+....+..+..+++++.|++++|.+. ...|..|..+++|++|+|++|++++..|..|.++++|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 788999999999999998888888999999999999999854 3567889999999999999999998889999999999
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCC-CCCCccccCCCCCCCCCCCCCCCCCcc
Q 046055 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHF-PAFDEASFAGNPNLCLPRNVTCLPSIY 521 (549)
Q Consensus 451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~~ 521 (549)
++|++++|+++...+..+..+++|++|++++|++.+.+|.. ..+ ++|+.+++++||+.|+|+..++..|+.
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 99999999999888889999999999999999999888865 444 689999999999999999766555443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-45 Score=382.21 Aligned_cols=441 Identities=20% Similarity=0.310 Sum_probs=293.5
Q ss_pred cccccCC-CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCc------C------CCCccccCCCCcCEEEccCC
Q 046055 7 SSLSKPK-MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFT------G------PLPVEIVSLKNLKHLSFGGN 73 (549)
Q Consensus 7 ~~~~~~~-~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~------~------~~~~~l~~l~~L~~L~ls~~ 73 (549)
.++.... .+++.|+|+++.+.|.+|..+. .+++|++|++++|.+. + .+|... +..|+ ++++++
T Consensus 73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~ 148 (636)
T 4eco_A 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKT 148 (636)
T ss_dssp TTEEECTTCCEEEEECTTSCCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHH
T ss_pred CCeEEcCCCCEEEEEecCcccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHh
Confidence 5554432 4788888888888888887766 8888888888888652 1 111111 12233 333333
Q ss_pred cceeccCccccC-------------------CCCCCEEEcc--CCCCccccchhccCCCCCceeecCCccccCcc-----
Q 046055 74 YFSGEIPESYSE-------------------IQSLEYLGLN--GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGG----- 127 (549)
Q Consensus 74 ~~~~~~~~~~~~-------------------l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----- 127 (549)
.+.+..|..+.. ...++.+.+. .|.+++ +|..++++++|++|++++ +.+.+.
T Consensus 149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~-n~l~~~~~~~~ 226 (636)
T 4eco_A 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN-SPFVAENICEA 226 (636)
T ss_dssp HTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES-CCCCGGGBSSS
T ss_pred hhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC-Ccccccccccc
Confidence 322222222110 0111111111 234444 555566666666666665 444443
Q ss_pred ------------CCcccc--CCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcc-ccc-cCCccccCC------CC
Q 046055 128 ------------IPPEFG--TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK-LTG-HIHPELSGL------IS 185 (549)
Q Consensus 128 ------------~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~l~~l------~~ 185 (549)
+|..++ ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ ..+..+..+ ++
T Consensus 227 ~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306 (636)
T ss_dssp CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT
T ss_pred ccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC
Confidence 566666 66667777776666666666666666667777776666 554 344444443 66
Q ss_pred CCEEeCCCCcCccccCc--cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCC-ccEEE
Q 046055 186 LTQLDLSLNCLTGEVPE--SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRK-LLLLD 262 (549)
Q Consensus 186 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~ 262 (549)
|++|++++|.++ ..|. .+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|+
T Consensus 307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS 383 (636)
T ss_dssp CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE
T ss_pred CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE
Confidence 777777777766 5555 66667777777777777665555 5566677777777777766 56666666776 77777
Q ss_pred CcCCcccccCCccccCCC--CccEEeccccccccCCCcccc-------CCCCCcEEEccCCcCcccCCcc-CCCCCCCCE
Q 046055 263 VSSNQIEGKIPRDLCKGE--RLKSLILMQNLFSGPIPEELG-------ACESLTKFRAMKNQLNGTIPAG-IFNLPLLKM 332 (549)
Q Consensus 263 l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~ 332 (549)
+++|.+. .+|..+.... +|+.|++++|.+.+..+..+. .+++|+.|++++|.+. .+|.. +..+++|++
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence 7777766 4555554433 677777777777766666565 6678888888888887 44443 445788888
Q ss_pred EEeecCcCccccCccccCCC-------CCCEEEccCceecccCCcccc--cCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055 333 IELDHNLLSGEIPENLSISD-------SLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403 (549)
Q Consensus 333 L~l~~~~l~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (549)
|++++|.+....+..+.... +|++|++++|.+. .+|..+. .+++|++|++++|.+++ +|..+..+++|+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 88888888854444443332 8999999999988 6777665 88999999999999985 888888899999
Q ss_pred EEEc------cCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055 404 LINV------SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463 (549)
Q Consensus 404 ~L~l------~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 463 (549)
.|++ ++|++.+..|..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++...
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence 9999 457777788889999999999999999995 6666554 7999999999988744
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-43 Score=375.50 Aligned_cols=457 Identities=18% Similarity=0.243 Sum_probs=264.9
Q ss_pred cccccC-CCcccEEEccCCCCCCcCChhhhhCCCCCcEEEc-cCCCCcCCCCccc-------------------------
Q 046055 7 SSLSKP-KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDA-FNNNFTGPLPVEI------------------------- 59 (549)
Q Consensus 7 ~~~~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~l------------------------- 59 (549)
.++... -.+++.|+|+++.+.|.+|..+. .+++|++|+| ++|.+.+..+..-
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 555433 25788888888888888887766 8888888888 7776554322110
Q ss_pred --------------------------cCCCCcCEEEcc--CCcceeccCccccCCCCCCEEEccCCCCccc-cchhccCC
Q 046055 60 --------------------------VSLKNLKHLSFG--GNYFSGEIPESYSEIQSLEYLGLNGIGLNGT-APVFLSLL 110 (549)
Q Consensus 60 --------------------------~~l~~L~~L~ls--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l 110 (549)
.....++.+.+. .|.+.+ +|..+.++++|++|++++|.+.+. .+..+.
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~-- 470 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE-- 470 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc--
Confidence 011112222222 244443 555566666666666666655541 000000
Q ss_pred CCCceeecCCccccCccCCcccc--CCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcc-ccc-cCCcc-------
Q 046055 111 KNLREMYIGYFNTYTGGIPPEFG--TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK-LTG-HIHPE------- 179 (549)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~------- 179 (549)
..+. +...+.+|..++ ++++|++|++++|.+.+..|..+..+++|+.|++++|+ +.+ ..|..
T Consensus 471 ------~~s~-n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~ 543 (876)
T 4ecn_A 471 ------DANS-DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543 (876)
T ss_dssp ------CTTS-HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC
T ss_pred ------cccc-ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhc
Confidence 0000 000002444444 45555555555554444445445555555555555554 433 22221
Q ss_pred ccCCCCCCEEeCCCCcCccccCc--cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCC
Q 046055 180 LSGLISLTQLDLSLNCLTGEVPE--SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRK 257 (549)
Q Consensus 180 l~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 257 (549)
+..+++|++|++++|.+. ..|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++
T Consensus 544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence 223335555555555555 4444 4555555555555555555 344 4455555555555555555 44545555555
Q ss_pred -ccEEECcCCcccccCCccccCCC--CccEEeccccccccCCCc---ccc--CCCCCcEEEccCCcCcccCCccCC-CCC
Q 046055 258 -LLLLDVSSNQIEGKIPRDLCKGE--RLKSLILMQNLFSGPIPE---ELG--ACESLTKFRAMKNQLNGTIPAGIF-NLP 328 (549)
Q Consensus 258 -L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~l~~~~~~~~~-~~~ 328 (549)
|+.|++++|.+. .+|..+...+ +|+.|++++|.+.+..+. .+. .+++|+.|++++|.+. .+|..+. .++
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~ 697 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS 697 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC
T ss_pred cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCC
Confidence 555555555555 3444443332 255555555555443221 111 2346777777777776 4554443 677
Q ss_pred CCCEEEeecCcCccccCccccC-------CCCCCEEEccCceecccCCcccc--cCCCCCEEEccCCcCCCCCccccccC
Q 046055 329 LLKMIELDHNLLSGEIPENLSI-------SDSLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNL 399 (549)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l 399 (549)
+|+.|++++|.+..+.+..+.. +++|++|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 7777777777777443333322 227888888888887 5666665 78888888888888874 67778888
Q ss_pred CCCCEEEccC------CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCC
Q 046055 400 KVISLINVSS------NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMS 473 (549)
Q Consensus 400 ~~L~~L~l~~------n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 473 (549)
++|+.|++++ |++.+..|..+..+++|+.|+|++|.++ .+|..+. ++|+.|++++|++....+..+.....
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~ 852 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIE 852 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHH
T ss_pred CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHcccccc
Confidence 8888888866 6777788888889999999999999994 6666554 68999999999987665555554444
Q ss_pred CCeEeCCCCCCc
Q 046055 474 LTTLDLSYNNLN 485 (549)
Q Consensus 474 L~~L~l~~n~~~ 485 (549)
+..+.+.+|+..
T Consensus 853 ~~~~~L~~n~~~ 864 (876)
T 4ecn_A 853 AGMYVLLYDKTQ 864 (876)
T ss_dssp TTCCEEECCTTS
T ss_pred chheeecCCCcc
Confidence 555555655544
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-42 Score=360.04 Aligned_cols=461 Identities=17% Similarity=0.193 Sum_probs=282.3
Q ss_pred cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEc
Q 046055 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL 94 (549)
Q Consensus 15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l 94 (549)
..++++++++.+++ +|..++ +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 33555565555554 444332 45555666655555444455555555666666555555555555555555555555
Q ss_pred cCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCcc-CCccccCCCCCCeEeccCcccc
Q 046055 95 NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE-IPASLSQLKLLDALFLQMNKLT 173 (549)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~l~ 173 (549)
++|.+.. .|.. .+++|++|+++ +|.+++. .+..+.++++|++|++++|.+.
T Consensus 108 s~N~l~~-lp~~--~l~~L~~L~Ls-------------------------~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 108 SHNRLQN-ISCC--PMASLRHLDLS-------------------------FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTSCCCE-ECSC--CCTTCSEEECC-------------------------SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCcCCc-cCcc--ccccCCEEECC-------------------------CCCccccCchHhhcccCcccEEecCCCccc
Confidence 5555542 2222 44455555554 4444431 1234444444444444444443
Q ss_pred ccCCccccCCCCC--CEEeCCCCcC--ccccCccccCCC-cCceeecccccCcccCCc-cCCCCCCccEEEccCcc----
Q 046055 174 GHIHPELSGLISL--TQLDLSLNCL--TGEVPESFSALK-NLSLVQLFKNNLRGPFPS-FVGDYPNLEVLQVWGNN---- 243 (549)
Q Consensus 174 ~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~---- 243 (549)
.. .+..+++| ++|++++|.+ .+..+..+..+. ..-.+++.+|.+....+. .+..+++|+.+++++|.
T Consensus 160 ~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 160 QL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp TT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred cC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 21 22222333 5555555544 333343333322 011234444444332221 22345566666666653
Q ss_pred -ccccCCccccCCCCccEEECcCCcccccCCc---cccCCCCccEEeccccccccCCCccc-----cCCCCCcEEEccCC
Q 046055 244 -FTGELPENLGRNRKLLLLDVSSNQIEGKIPR---DLCKGERLKSLILMQNLFSGPIPEEL-----GACESLTKFRAMKN 314 (549)
Q Consensus 244 -~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~ 314 (549)
+. .....+..+++++.+++.++.+.+.... .....++|++|++++|.+.+..+..+ ..++.|+.+++..+
T Consensus 237 ~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 237 RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315 (562)
T ss_dssp HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence 11 1122345556666666665554321100 01122467777777777665555444 45555555555555
Q ss_pred cCcccCC-ccCC---CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC
Q 046055 315 QLNGTIP-AGIF---NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390 (549)
Q Consensus 315 ~l~~~~~-~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 390 (549)
.+ .+| ..+. ..++|++|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 54 233 1111 2367999999999876432 12577899999999999998888889999999999999999885
Q ss_pred C--CccccccCCCCCEEEccCCcccccCC-cccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055 391 E--LPEEMFNLKVISLINVSSNNISGEIP-TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467 (549)
Q Consensus 391 ~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 467 (549)
. .|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 3 34668889999999999999987344 4588899999999999999866555443 69999999999999 56666
Q ss_pred ccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCCCCC
Q 046055 468 MQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVTCLP 518 (549)
Q Consensus 468 l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~ 518 (549)
+..+++|++|++++|++...++. ...+++|+.+++++||+.|.|+......
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 66999999999999999965554 5788999999999999999987654433
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-42 Score=369.11 Aligned_cols=459 Identities=20% Similarity=0.208 Sum_probs=349.3
Q ss_pred CCCcEEEccCCCCcCCCCccccCCCCcCEEEc-cCCcceeccCccccCC-CCCCEEEc---------------cCCCCcc
Q 046055 39 TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSF-GGNYFSGEIPESYSEI-QSLEYLGL---------------NGIGLNG 101 (549)
Q Consensus 39 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l-s~~~~~~~~~~~~~~l-~~L~~L~l---------------~~~~~~~ 101 (549)
.+++.|+|+++.+.+.+|.+|+++++|++|++ ++|.+.+..+...... ..+....+ ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47888999999998888889999999999999 8887765533221111 00000000 0000000
Q ss_pred c-----------cchhccCCCCCceeecCC-ccccCccCCccccCCCCCCEEEccCccCCc-----------------cC
Q 046055 102 T-----------APVFLSLLKNLREMYIGY-FNTYTGGIPPEFGTLSKLRVLDMASCNISG-----------------EI 152 (549)
Q Consensus 102 ~-----------~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-----------------~~ 152 (549)
. .+........++.+.+.. .+.+.+ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 000111223344444433 245555 78899999999999999999997 37
Q ss_pred Ccccc--CCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCc-Ccc-ccCccccCC-------CcCceeecccccCc
Q 046055 153 PASLS--QLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC-LTG-EVPESFSAL-------KNLSLVQLFKNNLR 221 (549)
Q Consensus 153 ~~~l~--~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~ 221 (549)
|..+. .+++|+.|++++|.+.+..|..+.++++|++|++++|. +++ ..|..+..+ ++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999888888999999999999999998 876 566655544 49999999999998
Q ss_pred ccCCc--cCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCC-ccEEeccccccccCCCc
Q 046055 222 GPFPS--FVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER-LKSLILMQNLFSGPIPE 298 (549)
Q Consensus 222 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 298 (549)
.+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 7777 7889999999999999998 777 7889999999999999998 77878888888 999999999988 5566
Q ss_pred cccCCCC--CcEEEccCCcCcccCCccC---C--CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcc
Q 046055 299 ELGACES--LTKFRAMKNQLNGTIPAGI---F--NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS 371 (549)
Q Consensus 299 ~~~~~~~--L~~L~l~~~~l~~~~~~~~---~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (549)
.+...+. |+.|++++|++.+.+|... . .+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 6666554 9999999999987655322 2 4458999999999998554444557899999999999998 44443
Q ss_pred -cc-------cCCCCCEEEccCCcCCCCCccccc--cCCCCCEEEccCCcccccCCcccccCCCCcEEECCC------Cc
Q 046055 372 -IG-------NLTNLNVLSLQNNRFNGELPEEMF--NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR------NS 435 (549)
Q Consensus 372 -~~-------~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~------n~ 435 (549)
+. ++++|+.|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|+|++ |.
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 32 2348999999999998 7888887 89999999999999986 688888999999999976 77
Q ss_pred CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCC-CCCCCCccccCCCCCCC
Q 046055 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGG-HFPAFDEASFAGNPNLC 509 (549)
Q Consensus 436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~~~l~~l~l~~n~~~~ 509 (549)
+.+.+|..+..+++|+.|++++|++. .+|..+. ++|+.|+|++|++....+..- ....+....+.+|+..+
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 77788889999999999999999995 6666654 689999999999875544221 11134455566665554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-41 Score=351.61 Aligned_cols=438 Identities=17% Similarity=0.164 Sum_probs=296.8
Q ss_pred CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG 93 (549)
Q Consensus 14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 93 (549)
++|++|++++|.+.+..+..+ ..+++|++|++++|++++..|..|..+++|++|++++|.+. .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT-TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhh-ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 799999999999987554544 49999999999999999877899999999999999999998 56665 899999999
Q ss_pred ccCCCCccc-cchhccCCCCCceeecCCccccCccCCccccCCCCC--CEEEccCccC--CccCCccccCCC--CCCeEe
Q 046055 94 LNGIGLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL--RVLDMASCNI--SGEIPASLSQLK--LLDALF 166 (549)
Q Consensus 94 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~~l~~l~--~L~~L~ 166 (549)
+++|.+... .|..++++++|++|++++ +.+... .+..+++| ++|++++|.+ ++..+..+..++ .+ .++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~ 202 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLV 202 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCC-CccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEE
Confidence 999999874 457899999999999988 655543 34445555 8899988888 666666666544 22 345
Q ss_pred ccCccccccCC-ccccCCCCCCEEeCCCCcCcc----ccCccccCCCcCceeecccccCccc----CCccCCCCCCccEE
Q 046055 167 LQMNKLTGHIH-PELSGLISLTQLDLSLNCLTG----EVPESFSALKNLSLVQLFKNNLRGP----FPSFVGDYPNLEVL 237 (549)
Q Consensus 167 l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L 237 (549)
++.|.+....+ ..+..+++|+.+++++|.... .....+..+++++.+++.++.+.+. .+... ..++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence 55555543222 234456667777776663110 1112344455555555554443321 00111 12355555
Q ss_pred EccCccccccCCccc-----cCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCCCccccCCCCCcEEEc
Q 046055 238 QVWGNNFTGELPENL-----GRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRA 311 (549)
Q Consensus 238 ~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 311 (549)
++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.. +....+++++++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~---------------------~~~~~~L~~L~l 338 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS---------------------VFAEMNIKMLSI 338 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH---------------------HHHTCCCSEEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh---------------------hhccCcceEEEc
Confidence 555555544444433 2223333333332222 111 00000 001134666666
Q ss_pred cCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc--CCcccccCCCCCEEEccCCcCC
Q 046055 312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK--IPPSIGNLTNLNVLSLQNNRFN 389 (549)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~ 389 (549)
.+|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 666554211 114667788888888888877777777888888888888888752 3456788889999999999888
Q ss_pred CCCcc-ccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055 390 GELPE-EMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM 468 (549)
Q Consensus 390 ~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 468 (549)
+.+|. .+..+++|+.|++++|++.+..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..+
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 493 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF 493 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTST
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHH
Confidence 64554 477888999999999988765555443 68999999999998 566666689999999999999995444448
Q ss_pred cCCCCCCeEeCCCCCCcccCC
Q 046055 469 QDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 469 ~~l~~L~~L~l~~n~~~~~~p 489 (549)
..+++|+.|++++|++.+..+
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCHH
T ss_pred hcCCCCCEEEecCCCcCCCcc
Confidence 889999999999999886444
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-39 Score=327.91 Aligned_cols=371 Identities=19% Similarity=0.198 Sum_probs=257.8
Q ss_pred CCCCEEEccCccCCccCCccccCCCCCCeEeccCcccc-ccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT-GHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ 214 (549)
Q Consensus 136 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 214 (549)
++|++|++++|.+++..+..+.++++|++|++++|.+. .+.+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67888888888888777778888888888888888775 34456678888888888888888777777888888888888
Q ss_pred cccccCcccCCc--cCCCCCCccEEEccCccccccCCcc-ccCCCCccEEECcCCcccccCCccccCC--CCccEEeccc
Q 046055 215 LFKNNLRGPFPS--FVGDYPNLEVLQVWGNNFTGELPEN-LGRNRKLLLLDVSSNQIEGKIPRDLCKG--ERLKSLILMQ 289 (549)
Q Consensus 215 l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~ 289 (549)
+++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ ..++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 888887753333 3677788888888888887655554 6777888888888888776666655554 5677777777
Q ss_pred cccccCCCcc--------ccCCCCCcEEEccCCcCcccCCccCCC---CCCCCEEEeecCcCccccCccccCCCCCCEEE
Q 046055 290 NLFSGPIPEE--------LGACESLTKFRAMKNQLNGTIPAGIFN---LPLLKMIELDHNLLSGEIPENLSISDSLNQLK 358 (549)
Q Consensus 290 ~~~~~~~~~~--------~~~~~~L~~L~l~~~~l~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 358 (549)
|.+....+.. +..+++|++|++++|.+.+..+..+.. .++|+.+++++|...+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 7766543322 123455666666666555444433321 24555555555543321100
Q ss_pred ccCceecccCCcccc--cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055 359 VAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL 436 (549)
Q Consensus 359 l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i 436 (549)
.+.+....+..+. ..++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 0011111111122 235788888888888767777777888888888888888777777778888888888888888
Q ss_pred cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCC
Q 046055 437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVT 515 (549)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~ 515 (549)
++..+..+..+++|+.|++++|+++...+..+..+++|++|++++|++.+.++.. ..+++|+.+++++||+.|.|+...
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 7766777788888888888888888777777888888888888888888655543 567788888888888888876544
Q ss_pred CCCCc
Q 046055 516 CLPSI 520 (549)
Q Consensus 516 ~~~~~ 520 (549)
....|
T Consensus 416 ~l~~~ 420 (455)
T 3v47_A 416 YLSRW 420 (455)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.3e-38 Score=330.09 Aligned_cols=483 Identities=20% Similarity=0.201 Sum_probs=374.0
Q ss_pred cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055 17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG 96 (549)
Q Consensus 17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (549)
++.+-++.+++. +|..+. +++++|+|++|+|++..+.+|.++++|++|++++|.+.+..+.+|.++++|++|++++
T Consensus 34 ~~~~c~~~~l~~-vP~~lp---~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYK-IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCSS-CCSSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCc-cCCCCC---cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 456777777765 676553 5899999999999977778899999999999999999977788999999999999999
Q ss_pred CCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCc-cCCccccCCCCCCeEeccCcccccc
Q 046055 97 IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLTGH 175 (549)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~l~~~ 175 (549)
|++....+..|+++++|++|++++ +.+....+..|+++++|++|++++|.++. ..+..+..+++|++|++++|.+...
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999988888899999999999998 77777667779999999999999999875 3567788999999999999999988
Q ss_pred CCccccCCCC----CCEEeCCCCcCccccCccccCCCcCceeecccccCcc-cCCccCCCCCCccEEEccC---------
Q 046055 176 IHPELSGLIS----LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWG--------- 241 (549)
Q Consensus 176 ~~~~l~~l~~----L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~--------- 241 (549)
.+..+..+.+ ...++++.|.+....+..+. ...++.+.+.++.... ..+..+..++.++...+..
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 7777665544 44788999988865554443 3455667776664321 1111222233333332221
Q ss_pred ---------------------ccc---cccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCC
Q 046055 242 ---------------------NNF---TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP 297 (549)
Q Consensus 242 ---------------------~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 297 (549)
+.. .......+....+++.+.+.++.+... ..+.....++.|++.++.+.....
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc
Confidence 110 011222334456677777777766533 234556788889988888775543
Q ss_pred ccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc--cCccccCCCCCCEEEccCceecccCCcccccC
Q 046055 298 EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE--IPENLSISDSLNQLKVAYNNIAGKIPPSIGNL 375 (549)
Q Consensus 298 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 375 (549)
..++.++.+.+..+...... ....+++|+.+++++|.+... .+..+....+++.+++..+.... .+..+..+
T Consensus 346 ---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 346 ---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp ---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred ---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence 34567888888888765322 344688999999999988633 44455677899999999998874 45567889
Q ss_pred CCCCEEEccCCcCCCCCc-cccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCc-ccchhhhhCCCCCCEE
Q 046055 376 TNLNVLSLQNNRFNGELP-EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS-GEIPKAISQLRDLSIL 453 (549)
Q Consensus 376 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L 453 (549)
++|+.+++.++......+ ..+..+++++.+++++|.+....+..+..+++|+.|++++|.+. ...|..+..+++|+.|
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 999999999987654443 56778999999999999999888889999999999999999854 4567889999999999
Q ss_pred ECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCC
Q 046055 454 NLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 454 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~ 513 (549)
++++|++++..|..|..+++|++|+|++|++.+..|.. ..+++|+.+++++|.....++.
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 99999999899999999999999999999999777753 6789999999999998776543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-38 Score=320.25 Aligned_cols=364 Identities=19% Similarity=0.197 Sum_probs=218.5
Q ss_pred CCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCccee-ccCccccCCCCCCEEEccCCCCccccchhccCCCCCceee
Q 046055 39 TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSG-EIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMY 117 (549)
Q Consensus 39 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 117 (549)
++|++|++++|.+++..+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.+....|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~------------- 96 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET------------- 96 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-------------
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-------------
Confidence 455555555555554444555555555555555554432 223345555555555555554444444
Q ss_pred cCCccccCccCCccccCCCCCCEEEccCccCCccCCc--cccCCCCCCeEeccCccccccCCcc-ccCCCCCCEEeCCCC
Q 046055 118 IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPA--SLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLN 194 (549)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~~ 194 (549)
..|+++++|++|++++|.+++..+. .+..+++|++|++++|.+....+.. +..+++|++|++++|
T Consensus 97 ------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 97 ------------GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ------------TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred ------------hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 4444445555555555544432222 2445555555555555555443333 455556666666665
Q ss_pred cCccccCccccCC--CcCceeecccccCcccCCccC--------CCCCCccEEEccCccccccCCccccCC---CCccEE
Q 046055 195 CLTGEVPESFSAL--KNLSLVQLFKNNLRGPFPSFV--------GDYPNLEVLQVWGNNFTGELPENLGRN---RKLLLL 261 (549)
Q Consensus 195 ~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L 261 (549)
.+.+..+..+..+ .+++.+++++|.+.+..+..+ ..+++|++|++++|.+++..+..+... ++++.+
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 5554444444433 455555555555543332221 133455555555555554444333222 445555
Q ss_pred ECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCC--CCCCCCEEEeecCc
Q 046055 262 DVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF--NLPLLKMIELDHNL 339 (549)
Q Consensus 262 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~ 339 (549)
++++|...+. .. ..+.+.+..+..+. ..++|++|++++|.
T Consensus 245 ~l~~~~~~~~------------------------~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 245 ILSNSYNMGS------------------------SF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp ECTTCTTTSC------------------------CT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred eecccccccc------------------------cc--------------chhhhccCcccccccccccCceEEEecCcc
Confidence 5554443211 00 00011101111111 24678888888888
Q ss_pred CccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcc
Q 046055 340 LSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS 419 (549)
Q Consensus 340 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (549)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 88777777888888888888888888777778888888888888888887667778888889999999999888777888
Q ss_pred cccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCC
Q 046055 420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP 465 (549)
Q Consensus 420 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 465 (549)
+..+++|++|++++|++++..+..+..+++|+.|++++|.++...|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888999999999999887666777888999999999998885544
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-37 Score=307.10 Aligned_cols=404 Identities=22% Similarity=0.279 Sum_probs=152.9
Q ss_pred CCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC-------------CEEEccCCCCccccc
Q 046055 38 MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL-------------EYLGLNGIGLNGTAP 104 (549)
Q Consensus 38 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~ 104 (549)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..+.++.+| ++|++++|.+++. |
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 45666666666666 3566666666666666666666666666666665554 5666666655432 1
Q ss_pred hhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCC
Q 046055 105 VFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLI 184 (549)
Q Consensus 105 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 184 (549)
. ..++|++|++++ +.+.+ +|.. .++|++|++++|.+++ .+.. .++|++|++++|.+.++ + .+..++
T Consensus 88 ~---~~~~L~~L~l~~-n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p-~~~~l~ 153 (454)
T 1jl5_A 88 E---LPPHLESLVASC-NSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P-ELQNSS 153 (454)
T ss_dssp S---CCTTCSEEECCS-SCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C-CCTTCT
T ss_pred C---CcCCCCEEEccC-CcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c-ccCCCC
Confidence 1 124555555555 33333 3321 2456666666665542 1111 14556666666655542 2 355555
Q ss_pred CCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECc
Q 046055 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVS 264 (549)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 264 (549)
+|++|++++|.+.+ .|.. ..+|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|.. .++|+.|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 66666666555553 2221 2355555555555553 23 24455555555555555542 2221 1345555555
Q ss_pred CCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcccc
Q 046055 265 SNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEI 344 (549)
Q Consensus 265 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 344 (549)
+|.+. .+| .+..+++|+.|++++|.+.+.. . ..++|+.|++++|++.+ +|.. .++|++|++++|.+.+..
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 55554 233 2444555555555555444321 1 12445555555554442 2221 244455555554444321
Q ss_pred CccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCC
Q 046055 345 PENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI 424 (549)
Q Consensus 345 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 424 (549)
. ..++|++|++++|.+.+. +. ..++|++|++++|.+++ +|.. +++|+.|++++|.+. .+|. .++
T Consensus 294 ~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 294 E----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp C----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred C----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh
Confidence 0 113444444444444421 10 01244444444444442 2222 244444444444444 2222 234
Q ss_pred CCcEEECCCCcCcc--cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc--cCCCCCCCCCCCcc
Q 046055 425 SLTTVDFSRNSLSG--EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG--EVPSGGHFPAFDEA 500 (549)
Q Consensus 425 ~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~~l~~l 500 (549)
+|++|++++|.+++ .+|..+ ..|. .|...+.+|. .+++|+.|++++|++.+ .+| ++++.+
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l------~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L 421 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESV------EDLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIP-----ESVEDL 421 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTC------CEEE--CCC-------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHH------Hhhh--hccccccccc---ccCcCCEEECCCCcCCccccch-----hhHhhe
Confidence 44444444444443 222211 1111 1222222222 12788999999999886 333 467777
Q ss_pred ccCCCCCCC
Q 046055 501 SFAGNPNLC 509 (549)
Q Consensus 501 ~l~~n~~~~ 509 (549)
.+.+|...|
T Consensus 422 ~~~~~~~~~ 430 (454)
T 1jl5_A 422 RMNSERVVD 430 (454)
T ss_dssp ---------
T ss_pred eCcCcccCC
Confidence 887776554
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-36 Score=304.27 Aligned_cols=409 Identities=21% Similarity=0.257 Sum_probs=270.8
Q ss_pred CCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCc-------------CEEEccCCcceec
Q 046055 12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNL-------------KHLSFGGNYFSGE 78 (549)
Q Consensus 12 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~ls~~~~~~~ 78 (549)
+.++|++|+++++.+ +.+|..+. .+++|++|++++|.+.+.+|..++++++| ++|++++|.+. .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 357999999999999 67998876 99999999999999998899999998875 99999999987 4
Q ss_pred cCccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccC
Q 046055 79 IPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQ 158 (549)
Q Consensus 79 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 158 (549)
+|.. .++|++|++++|.+.+ .|. .+++|++|++++ +.+.+ ++.. .++|++|++++|.+++ .| .+..
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~-n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPE---LPQSLKSLLVDN-NNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCC---CCTTCCEEECCS-SCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCCC---cCCCCEEEccCCcCCc-ccc---ccCCCcEEECCC-CccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 5542 3689999999999987 443 348999999998 55553 2211 2699999999999985 56 5999
Q ss_pred CCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEE
Q 046055 159 LKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ 238 (549)
Q Consensus 159 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 238 (549)
+++|++|++++|.+.++ +.. .++|++|++++|.+.+ .| .+..+++|+.|++++|.+.+ +|.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 99999999999999853 322 3599999999999986 45 58899999999999999885 4432 36999999
Q ss_pred ccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc
Q 046055 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG 318 (549)
Q Consensus 239 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 318 (549)
+++|.+. .+|. +..+++|+.|++++|++.+ ++. .+++|+.|++++|.+.+. +. ..++|+.+++++|++.+
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSE
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCc
Confidence 9999998 6664 8899999999999999985 343 248999999999998863 22 24899999999999875
Q ss_pred cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccccc
Q 046055 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN 398 (549)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 398 (549)
++. ..++|+.|++++|.+.+.. . ..++|++|++++|.+.+ +|.. +++|++|++++|.++ .+|. .
T Consensus 292 -l~~---~~~~L~~L~l~~N~l~~i~-~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~ 355 (454)
T 1jl5_A 292 -LSE---LPPNLYYLNASSNEIRSLC-D---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L 355 (454)
T ss_dssp -ESC---CCTTCCEEECCSSCCSEEC-C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C
T ss_pred -ccC---cCCcCCEEECcCCcCCccc-C---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h
Confidence 222 1378999999999998532 1 23689999999999985 5543 589999999999998 5666 4
Q ss_pred CCCCCEEEccCCcccc--cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc--cCCccccCCCCC
Q 046055 399 LKVISLINVSSNNISG--EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG--PIPTDMQDMMSL 474 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L 474 (549)
+++|+.|++++|++.+ ..|..+. .| +.|...+.+|.. +++|+.|++++|.+++ .+| +++
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl 418 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESV 418 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC-----------------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhH
Confidence 7899999999999986 4554443 33 345555555543 5789999999999985 333 357
Q ss_pred CeEeCCCCCCcccCCC
Q 046055 475 TTLDLSYNNLNGEVPS 490 (549)
Q Consensus 475 ~~L~l~~n~~~~~~p~ 490 (549)
+.|.+.+|.+.+.++.
T Consensus 419 ~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 419 EDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------
T ss_pred hheeCcCcccCCcccc
Confidence 7788888888766553
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-36 Score=302.78 Aligned_cols=320 Identities=20% Similarity=0.177 Sum_probs=209.2
Q ss_pred CEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccc
Q 046055 139 RVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKN 218 (549)
Q Consensus 139 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 218 (549)
+.++++++.++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777776 4454442 57888888888888777777888888888888888887777777888888888888888
Q ss_pred cCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCc
Q 046055 219 NLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE 298 (549)
Q Consensus 219 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 298 (549)
.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 87766666677778888888888877766667777777788888877777766666666677777777777766655555
Q ss_pred cccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCC
Q 046055 299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL 378 (549)
Q Consensus 299 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 378 (549)
.+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|...+..+.......+|++|++++|.+.+..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 56666666666666666665555555666666666666665554444443334456666666665553333445555556
Q ss_pred CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055 379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN 458 (549)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 458 (549)
++|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 66666665555444445555555555555555555555555555555555555555555444445555555555555555
Q ss_pred ccc
Q 046055 459 QLT 461 (549)
Q Consensus 459 ~i~ 461 (549)
.+.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.8e-35 Score=293.86 Aligned_cols=347 Identities=26% Similarity=0.342 Sum_probs=275.9
Q ss_pred CCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCE
Q 046055 109 LLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188 (549)
Q Consensus 109 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 188 (549)
.+++++.|++.+ +.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+....+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~-~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADR-LGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCS-SCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCC-CCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 467899999987 44433 33 47788999999999999885443 8889999999999999886543 889999999
Q ss_pred EeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcc
Q 046055 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQI 268 (549)
Q Consensus 189 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 268 (549)
|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++|++.+ .+.. .+ .+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcC
Confidence 9999998875433 78899999999999988753 2 477889999999964 4442 22 378889999999999988
Q ss_pred cccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccc
Q 046055 269 EGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENL 348 (549)
Q Consensus 269 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 348 (549)
.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++.+|.+.+. ..+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 743 357788899999999998876543 67788999999999888742 356778899999999998886654 7
Q ss_pred cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055 349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT 428 (549)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 428 (549)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 778889999999998885433 7788899999999998874433 6788899999999998876554 678889999
Q ss_pred EECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCccc
Q 046055 429 VDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 429 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++.+.
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999988854 467888899999999999886655 78888899999999988863
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-34 Score=289.48 Aligned_cols=346 Identities=24% Similarity=0.313 Sum_probs=282.5
Q ss_pred CCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCe
Q 046055 85 EIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDA 164 (549)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 164 (549)
.+.+++.|++.++.+... + .+..+++|++|++++ +.+....+ +..+++|++|++++|.+++..+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSN-NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCC-CccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 356899999999887753 3 478899999999998 55554433 8899999999999999885443 889999999
Q ss_pred EeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccc
Q 046055 165 LFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244 (549)
Q Consensus 165 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (549)
|++++|.+.... .+..+++|++|++++|.+... ..+..+++|+.+++.+ .+.... .+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcC
Confidence 999999888653 388899999999999988743 2478889999999864 444322 377889999999999988
Q ss_pred cccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccC
Q 046055 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGI 324 (549)
Q Consensus 245 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 324 (549)
.. . ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 74 3 347888999999999999876543 67789999999999988754 467888999999999999875443 7
Q ss_pred CCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCE
Q 046055 325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISL 404 (549)
Q Consensus 325 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (549)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 788999999999999886654 7788999999999999885443 7789999999999999986554 678899999
Q ss_pred EEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055 405 INVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462 (549)
Q Consensus 405 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 462 (549)
|++++|++.+. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999998754 468889999999999999987766 7888999999999999985
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=293.83 Aligned_cols=350 Identities=18% Similarity=0.147 Sum_probs=293.0
Q ss_pred ceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCC
Q 046055 114 REMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193 (549)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 193 (549)
+.++.++ ..+. .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 14 ~~v~c~~-~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHR-KRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCS-CCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 4555554 3333 3455443 5899999999999988788899999999999999999988888999999999999999
Q ss_pred CcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC
Q 046055 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP 273 (549)
Q Consensus 194 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 273 (549)
|.+....+..|.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99987766778899999999999999998888888899999999999999987778889999999999999999987666
Q ss_pred ccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCC
Q 046055 274 RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS 353 (549)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 353 (549)
..+..+++|+.|++++|.+....+..+..+++|+.|++.+|...+.++.......+|++|++++|.+.+..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 67888999999999999998888888999999999999999887778777777789999999999998766567888999
Q ss_pred CCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055 354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433 (549)
Q Consensus 354 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 433 (549)
|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999999988888899999999999999999877888999999999999999999877777888999999999999
Q ss_pred CcCcccch-hhhhCCCCCCEEECCCCcccccCCcccc
Q 046055 434 NSLSGEIP-KAISQLRDLSILNLSRNQLTGPIPTDMQ 469 (549)
Q Consensus 434 n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 469 (549)
|.+...-. .++. .....+.+.++......|..+.
T Consensus 330 N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 330 NPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp SCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGGGT
T ss_pred CCccCccchHhHH--hhhhccccCccCceeCCchHHc
Confidence 99874322 1221 2233345556655544444433
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-34 Score=281.39 Aligned_cols=334 Identities=17% Similarity=0.199 Sum_probs=228.6
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ 214 (549)
Q Consensus 135 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 214 (549)
++++++++++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46777777777777654444566677777777777777666666677777777777777776665566666666677777
Q ss_pred cccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055 215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG 294 (549)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 294 (549)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~------------- 187 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS------------- 187 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT-------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc-------------
Confidence 776666644444455666666666666666655555556666666666666665532 2233344
Q ss_pred CCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccccc
Q 046055 295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374 (549)
Q Consensus 295 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 374 (549)
|+.+++.+|.+.+ +...++|++|++++|.+...... ..++|++|++++|.+.+. ..+..
T Consensus 188 -----------L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 188 -----------LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp -----------CSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred -----------cceeecccccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcC
Confidence 4444444444431 12234677777777776644322 246788888888887743 45778
Q ss_pred CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEE
Q 046055 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN 454 (549)
Q Consensus 375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 454 (549)
+++|++|++++|.+.+..|..+..+++|+.|++++|++.+ .+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 8888888888888886777888888888888888888874 4555667889999999999888 5566677889999999
Q ss_pred CCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCC
Q 046055 455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLP 511 (549)
Q Consensus 455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~ 511 (549)
+++|.++.. + +..+++|+.|++++|++... .....+..+....+.+++..|.+
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~-~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH-HHHHHTTTCCTTTBCCCCSCCCT
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccch-hHHHHHHHHHhhcccccCceecc
Confidence 999998854 2 67788899999999998753 22234566777778888888865
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-34 Score=285.23 Aligned_cols=353 Identities=19% Similarity=0.202 Sum_probs=192.1
Q ss_pred CCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCcee
Q 046055 37 GMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREM 116 (549)
Q Consensus 37 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 116 (549)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+.+ +| +..+++|++|++++|.+.+. + ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 66777777777777774 34 57777777777777777764 33 66777777777777776653 2 5666666666
Q ss_pred ecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcC
Q 046055 117 YIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCL 196 (549)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 196 (549)
++++ +.+... + ++.+++|++|++++|.+++. .+..+++|++|++++|...+.. .+..+++|++|++++|.+
T Consensus 112 ~L~~-N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDT-NKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCS-SCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred ECCC-CcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 6666 444432 2 55666666666666666542 2555566666666665322221 345555566666665555
Q ss_pred ccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccc
Q 046055 197 TGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL 276 (549)
Q Consensus 197 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 276 (549)
++. + +..+++|+.|++++|.+.+. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+.
T Consensus 183 ~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~------- 246 (457)
T 3bz5_A 183 TEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT------- 246 (457)
T ss_dssp CCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-------
T ss_pred cee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-------
Confidence 532 2 44455555555555554432 13344455555555554443 22 344444444444444444
Q ss_pred cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ 356 (549)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 356 (549)
+.. +..+++|+.+++.++ +|+.+++++|...+..| +..+++|+.
T Consensus 247 -----------------~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~ 290 (457)
T 3bz5_A 247 -----------------ELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE 290 (457)
T ss_dssp -----------------CCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred -----------------CcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence 321 223344444443332 23344444444333332 234455555
Q ss_pred EEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055 357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL 436 (549)
Q Consensus 357 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i 436 (549)
|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++.+. .+..+++|+.|++++|++
T Consensus 291 L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 291 LDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred EECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCC
Confidence 55555554433332 2234444443333 4566666666666643 256666677777777766
Q ss_pred cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC
Q 046055 437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490 (549)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 490 (549)
++ ++.|+.|++++|.+.+. ..+..|..+++++|++++.+|.
T Consensus 352 ~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 352 QD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 63 13455556666666533 2334566677777777777664
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-33 Score=281.62 Aligned_cols=315 Identities=19% Similarity=0.162 Sum_probs=233.0
Q ss_pred ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055 10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL 89 (549)
Q Consensus 10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L 89 (549)
++++++|++|++++|.+.+ +| .+. .+++|++|++++|.+++ ++ ++.+++|++|++++|.+.+. + +.++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITD-MT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCC-CT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCccc-Ch-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 5568999999999999987 45 444 89999999999999996 44 89999999999999999853 4 8899999
Q ss_pred CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055 90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM 169 (549)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 169 (549)
++|++++|.+... + ++.+++|++|++++ +.+.+. .++.+++|++|++++|...+.. .+..+++|+.|++++
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~-N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCAR-NTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTT-SCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCC-Ccccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999999874 3 88999999999998 666653 3889999999999999544344 478899999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC
Q 046055 170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249 (549)
Q Consensus 170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 249 (549)
|.+.+.. +..+++|++|++++|.+++. .+..+++|+.|++++|++.+ +| +..+++|++|++++|.+++..
T Consensus 180 n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 180 NKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred Cccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 9998652 88899999999999999864 47889999999999999986 44 778999999999999998543
Q ss_pred ccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCC
Q 046055 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPL 329 (549)
Q Consensus 250 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 329 (549)
...+++|+.++++.+. |+.+++++|.+.+..+ +..+++|+.|++++|...+.+|. ..++
T Consensus 250 --~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp --CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred --HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 4567888888877653 3445555555432222 34455555555555554433332 2233
Q ss_pred CCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCC
Q 046055 330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN 389 (549)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 389 (549)
|+.+++++ +++|++|++++|++++. + ++.+++|+.|++++|+++
T Consensus 309 L~~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 309 ITELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CSCCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred ceEechhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 33333222 23455555555555532 1 444555555555555544
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=279.07 Aligned_cols=313 Identities=17% Similarity=0.144 Sum_probs=222.8
Q ss_pred CCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEc
Q 046055 160 KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQV 239 (549)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 239 (549)
++++.+++.++.+..+.+..+..+++|++|++++|.+....+..+..++ +|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------------------------~L~~L~L 100 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------------------------TIQKLYM 100 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------------------------TCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC------------------------CcCEEEC
Confidence 4455555555555544444444555555555555555444444444444 4555555
Q ss_pred cCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCccc
Q 046055 240 WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT 319 (549)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 319 (549)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 54444443344444555555555555555433222234555555555555555555555566677777777777776633
Q ss_pred CCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccC
Q 046055 320 IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL 399 (549)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 399 (549)
.+..+++|+.+++++|.+.+. ...+.+++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCC
Confidence 245678999999999988743 3457899999999999854 332 357999999999999743 578899
Q ss_pred CCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeC
Q 046055 400 KVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL 479 (549)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 479 (549)
++|+.|++++|.+.+..+..+..+++|++|++++|++++ ++..+..+++|+.|++++|+++ .++..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 999999999999998889999999999999999999985 5666678899999999999999 56677888999999999
Q ss_pred CCCCCcccCCCCCCCCCCCccccCCCCCCCCCCC
Q 046055 480 SYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 480 ~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~ 513 (549)
++|++... | ...+++|+.+++++||+.|.+..
T Consensus 326 ~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 326 DHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCcccee-C-chhhccCCEEEcCCCCccchhHH
Confidence 99999855 3 56789999999999999986543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.6e-33 Score=287.69 Aligned_cols=334 Identities=18% Similarity=0.203 Sum_probs=224.9
Q ss_pred CCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ 214 (549)
Q Consensus 135 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 214 (549)
+.+++.++++++.++...+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666666666666644444555666666666666666655555666666666666666666655555555666666666
Q ss_pred cccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055 215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG 294 (549)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 294 (549)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. .
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C-------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C-------------------
Confidence 666665544444445555666666666655544444555555555555555555432 1
Q ss_pred CCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccccc
Q 046055 295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374 (549)
Q Consensus 295 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 374 (549)
+..+++|+.+++.+|.+.+ +...++|+.|++++|.+....+. ..++|+.|++++|.+++ +..+..
T Consensus 188 -----~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 188 -----LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp -----GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGG
T ss_pred -----hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--Chhhcc
Confidence 2334455555555554432 22345677777777777654332 23578888888888874 356778
Q ss_pred CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEE
Q 046055 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN 454 (549)
Q Consensus 375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 454 (549)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ ++..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 8899999999998887778888888999999999998874 4556677899999999999998 5677778889999999
Q ss_pred CCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCC
Q 046055 455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLP 511 (549)
Q Consensus 455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~ 511 (549)
+++|.++... +..+++|+.|++++|++.+... ...+..+....+.+++..|..
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCc
Confidence 9999998542 6678899999999999875422 234556666777888888864
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-32 Score=265.05 Aligned_cols=306 Identities=23% Similarity=0.323 Sum_probs=172.5
Q ss_pred cCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCce
Q 046055 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212 (549)
Q Consensus 133 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 212 (549)
..+++|++|+++++.+.. .+ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 345666666666666652 22 25556666666666665554322 55556666666666555432 23444555555
Q ss_pred eecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccc
Q 046055 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLF 292 (549)
Q Consensus 213 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 292 (549)
|++++|.+.+..+ +..+++|++|++++|...... . .+..+++|+.|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~------------------------~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-S------------------------PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-G------------------------GGTTCTTCCEEECCSSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCcccc-c------------------------chhhCCCCcEEEecCCCc
Confidence 5555554442211 334444444444444332111 1 233444444444444443
Q ss_pred ccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccc
Q 046055 293 SGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI 372 (549)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 372 (549)
....+ +..+++|+++++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 32211 44445555555555554422 21 4456666666666666654433 5556667777777776663332 6
Q ss_pred ccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCE
Q 046055 373 GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI 452 (549)
Q Consensus 373 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 452 (549)
..+++|++|++++|.+++ + ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 667777777777777653 2 3466677777777777777643 34667777777777777777666777777777777
Q ss_pred EECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055 453 LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 453 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 485 (549)
|++++|.+++..+ +..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7777777775444 666777777777777764
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-33 Score=268.15 Aligned_cols=258 Identities=27% Similarity=0.492 Sum_probs=207.3
Q ss_pred CccEEECcCCcccc--cCCccccCCCCccEEeccc-cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEE
Q 046055 257 KLLLLDVSSNQIEG--KIPRDLCKGERLKSLILMQ-NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI 333 (549)
Q Consensus 257 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 333 (549)
+++.|+++++.+.+ .++..+..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4555555555666666653 55555555566666666666676776666677777777788888
Q ss_pred EeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC-CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcc
Q 046055 334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT-NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNI 412 (549)
Q Consensus 334 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (549)
++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 8888887777777777888888888888888877888888887 888899998888878888888776 99999999999
Q ss_pred cccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCC
Q 046055 413 SGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGG 492 (549)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 492 (549)
.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++.+.+|..+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888889999999999999999866555 7888999999999999998899999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCCCCCCCCC
Q 046055 493 HFPAFDEASFAGNPNLCLPRNVTC 516 (549)
Q Consensus 493 ~~~~l~~l~l~~n~~~~~~~~~~~ 516 (549)
.+++|+.+++.+||++|+.+...|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cccccChHHhcCCCCccCCCCCCC
Confidence 999999999999999999766655
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=287.11 Aligned_cols=311 Identities=16% Similarity=0.149 Sum_probs=230.0
Q ss_pred CCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEEC
Q 046055 184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDV 263 (549)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 263 (549)
.+++.++++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34445555555444333334444555555555555555444444555555555555555555444444555566666666
Q ss_pred cCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc
Q 046055 264 SSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE 343 (549)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (549)
++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccc
Confidence 66665543333345566666666666666666666677788888888888887743 2 45688999999999988743
Q ss_pred cCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccC
Q 046055 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC 423 (549)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (549)
.....|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|..+
T Consensus 208 -----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp -----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred -----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 45578999999999998544332 3689999999999974 4678899999999999999998889999999
Q ss_pred CCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccC
Q 046055 424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA 503 (549)
Q Consensus 424 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~ 503 (549)
++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+. | ...+++|+.++++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~ 353 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLS 353 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEee
Confidence 999999999999985 5666778899999999999999 6777788999999999999999855 3 5678999999999
Q ss_pred CCCCCCCC
Q 046055 504 GNPNLCLP 511 (549)
Q Consensus 504 ~n~~~~~~ 511 (549)
+||+.|.|
T Consensus 354 ~N~~~~~~ 361 (597)
T 3oja_B 354 HNDWDCNS 361 (597)
T ss_dssp SSCEEHHH
T ss_pred CCCCCChh
Confidence 99999865
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.4e-32 Score=262.57 Aligned_cols=308 Identities=21% Similarity=0.305 Sum_probs=222.3
Q ss_pred hccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCC
Q 046055 106 FLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLIS 185 (549)
Q Consensus 106 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 185 (549)
.+..+++|++|++++ +.+.. + +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+... ..+..+++
T Consensus 39 ~~~~l~~L~~L~l~~-~~i~~-~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAG-EKVAS-I-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCS-SCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeC-Ccccc-c-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 355789999999998 55543 3 358889999999999999985433 89999999999999999864 46899999
Q ss_pred CCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcC
Q 046055 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS 265 (549)
Q Consensus 186 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 265 (549)
|++|++++|.+....+ +..+++|+.+++++|......+ .+..+++|++|++++|.+.+. +. +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccC
Confidence 9999999999985433 7889999999999997664443 377899999999999988743 32 77888899999988
Q ss_pred CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC
Q 046055 266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP 345 (549)
Q Consensus 266 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 345 (549)
|.+.+..+ +..+++|+.+++++|.+....+ +. .+++|++|++++|.+.+..+
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~------------------------~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VA------------------------NMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG------------------------GCTTCCEEECCSSCCCCCGG
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hh------------------------cCCcCCEEEccCCccCCCcc
Confidence 88764322 5566666666666665543321 33 44555555555555553332
Q ss_pred ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCC
Q 046055 346 ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS 425 (549)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 425 (549)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+..+..+++
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 45556666666666666532 3456677777777777777632 34667777777777777777666677777788
Q ss_pred CcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 426 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
|++|++++|.+++..| +..+++|+.|++++|.++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888776554 677788888888888765
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.6e-30 Score=247.37 Aligned_cols=288 Identities=20% Similarity=0.212 Sum_probs=133.3
Q ss_pred CCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240 (549)
Q Consensus 161 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (549)
+++.++++++.+..+ +..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 345555555544422 22121 345555555555544444444445555555555554444444444444444444444
Q ss_pred CccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc--
Q 046055 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG-- 318 (549)
Q Consensus 241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-- 318 (549)
+|.++ .+|..+. ++|+.|++++|.+. ...+..+..+++|+.+++.+|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT------------------------KVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC------------------------BBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc------------------------ccCHhHhcCCccccEEECCCCcCCccC
Confidence 44444 2222221 34444444444443 3333334444444444444444421
Q ss_pred cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccccc
Q 046055 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN 398 (549)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 398 (549)
..+..+..+++|++|++++|.+... |..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 2333444455555555555554432 2111 145555555555555444445555555555555555554444444555
Q ss_pred CCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhC------CCCCCEEECCCCcccc--cCCccccC
Q 046055 399 LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQ------LRDLSILNLSRNQLTG--PIPTDMQD 470 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~l~~n~i~~--~~~~~l~~ 470 (549)
+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..|.. .+.++.|++++|.+.. ..|..+..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 555555555555554 34444555555555555555555443333321 2455555555555532 33445555
Q ss_pred CCCCCeEeCCCC
Q 046055 471 MMSLTTLDLSYN 482 (549)
Q Consensus 471 l~~L~~L~l~~n 482 (549)
+++++.+++++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 555555555555
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.8e-30 Score=246.78 Aligned_cols=267 Identities=17% Similarity=0.201 Sum_probs=137.7
Q ss_pred CcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEec
Q 046055 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL 287 (549)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 287 (549)
++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 34444555544444444444444555555555555555444444555555555555555554 2222222 45555555
Q ss_pred cccccccCCCccccCCCCCcEEEccCCcCcc--cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceec
Q 046055 288 MQNLFSGPIPEELGACESLTKFRAMKNQLNG--TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA 365 (549)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 365 (549)
++|.+....+..+..+++|+.|++.+|.+.. ..+..+..+ +|++|++++|.+.+. |..+ .++|++|++++|.+.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDL--PETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSS--CSSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Cccc--cCCCCEEECCCCcCC
Confidence 5555554444445555555555555555532 233334344 566666666665542 2222 145666666666665
Q ss_pred ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhh
Q 046055 366 GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS 445 (549)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 445 (549)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..|.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 554455556666666666666665444445555666666666666655 4455555566666666666666544444443
Q ss_pred C------CCCCCEEECCCCccc--ccCCccccCCCCCCeEeCCCC
Q 046055 446 Q------LRDLSILNLSRNQLT--GPIPTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 446 ~------~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~n 482 (549)
. .++|+.|++++|.+. ...+..+..+++|+.+++++|
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 2 244556666666554 344455555666666666555
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=244.02 Aligned_cols=290 Identities=22% Similarity=0.285 Sum_probs=222.5
Q ss_pred CCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeec
Q 046055 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL 215 (549)
Q Consensus 136 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 215 (549)
.+++.++++++.++ ..|..+. +.++.|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 37899999999887 4555443 68999999999999888888999999999999999999888899999999999999
Q ss_pred ccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccc--cCCccccCCCCccEEeccccccc
Q 046055 216 FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG--KIPRDLCKGERLKSLILMQNLFS 293 (549)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 293 (549)
++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 9999984 444433 799999999999997767778889999999999998853 33444555555555555555444
Q ss_pred cCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc
Q 046055 294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG 373 (549)
Q Consensus 294 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 373 (549)
. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 185 ~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 T-------------------------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp S-------------------------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred c-------------------------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 2 232222 5677777777777766666777777777888877777766666777
Q ss_pred cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCccccc------CCCCcEEECCCCcCcc--cchhhhh
Q 046055 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISG------CISLTTVDFSRNSLSG--EIPKAIS 445 (549)
Q Consensus 374 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~L~~n~i~~--~~~~~~~ 445 (549)
.+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..+..|.. .+.++.|++++|.+.. ..|..|.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 7888888888888877 67777777888888888888887665555543 3778889999998864 5567888
Q ss_pred CCCCCCEEECCCCc
Q 046055 446 QLRDLSILNLSRNQ 459 (549)
Q Consensus 446 ~~~~L~~L~l~~n~ 459 (549)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 88999999998884
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=244.16 Aligned_cols=290 Identities=22% Similarity=0.286 Sum_probs=190.3
Q ss_pred CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055 137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216 (549)
Q Consensus 137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 216 (549)
+++.++++++.++ .+|..+. ++++.|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5666777666665 3443332 456666666666665555556666666666666666665555555666666666666
Q ss_pred cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296 (549)
Q Consensus 217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 296 (549)
+|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ....
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 165 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGFE 165 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGSC
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCCC
Confidence 665552 222222 455555555555553333344555555555555555431 0123
Q ss_pred CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT 376 (549)
Q Consensus 297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 376 (549)
+..+..+ +|+.+++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 3344444 5666666666665 3444332 6788888888888877777788888888888888888877677788888
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCccccc------CCCCcEEECCCCcCc--ccchhhhhCCC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISG------CISLTTVDFSRNSLS--GEIPKAISQLR 448 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~L~~n~i~--~~~~~~~~~~~ 448 (549)
+|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.. .++|+.|++++|.+. ...+..|..++
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 8999999988887 77777888888999999999888666666654 367899999999887 56778889999
Q ss_pred CCCEEECCCCc
Q 046055 449 DLSILNLSRNQ 459 (549)
Q Consensus 449 ~L~~L~l~~n~ 459 (549)
+|+.+++++|+
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 99999998875
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.3e-30 Score=248.38 Aligned_cols=251 Identities=27% Similarity=0.424 Sum_probs=212.4
Q ss_pred CCccEEEccCccccc--cCCccccCCCCccEEECcC-CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcE
Q 046055 232 PNLEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSS-NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTK 308 (549)
Q Consensus 232 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 308 (549)
..+++|+++++.+.+ .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 6677777777777777774 7777677777777778888888888777677777888888888
Q ss_pred EEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCC-CCCEEEccCceecccCCcccccCCCCCEEEccCCc
Q 046055 309 FRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR 387 (549)
Q Consensus 309 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 387 (549)
|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+.+..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888877888888889999999999998878888888877 899999999999988888888887 9999999999
Q ss_pred CCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055 388 FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467 (549)
Q Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 467 (549)
+++..|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9888888899999999999999999855554 788899999999999999889999999999999999999999888875
Q ss_pred ccCCCCCCeEeCCCCCCc
Q 046055 468 MQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 468 l~~l~~L~~L~l~~n~~~ 485 (549)
..+++|+.+++++|+..
T Consensus 288 -~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -TTGGGSCGGGTCSSSEE
T ss_pred -ccccccChHHhcCCCCc
Confidence 78899999999999844
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.8e-33 Score=284.76 Aligned_cols=350 Identities=19% Similarity=0.197 Sum_probs=183.0
Q ss_pred CCCceeecCCccccCccC-CccccCCCCCCEEEccCccCCcc----CCccccCCCCCCeEeccCccccccCCccc-cCCC
Q 046055 111 KNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCNISGE----IPASLSQLKLLDALFLQMNKLTGHIHPEL-SGLI 184 (549)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~l-~~l~ 184 (549)
++|++|++++ +.+.... ...+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.......+ ..++
T Consensus 3 ~~l~~L~Ls~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhh-cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4677788876 4443322 22356677888888888877642 34556667778888888777664322222 2233
Q ss_pred ----CCCEEeCCCCcCcc----ccCccccCCCcCceeecccccCcccCCcc-----CCCCCCccEEEccCccccccC---
Q 046055 185 ----SLTQLDLSLNCLTG----EVPESFSALKNLSLVQLFKNNLRGPFPSF-----VGDYPNLEVLQVWGNNFTGEL--- 248 (549)
Q Consensus 185 ----~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~--- 248 (549)
+|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+.. ....++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57777777777763 33556667777777777777765432221 122456777777777666422
Q ss_pred -CccccCCCCccEEECcCCcccccCCcccc-----CCCCccEEeccccccccC----CCccccCCCCCcEEEccCCcCcc
Q 046055 249 -PENLGRNRKLLLLDVSSNQIEGKIPRDLC-----KGERLKSLILMQNLFSGP----IPEELGACESLTKFRAMKNQLNG 318 (549)
Q Consensus 249 -~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~ 318 (549)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.. .+..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 34445566777777777766543222222 134666666666655542 12334445555555555555543
Q ss_pred cC-----CccCCCCCCCCEEEeecCcCccc----cCccccCCCCCCEEEccCceecccCCcccc-----cCCCCCEEEcc
Q 046055 319 TI-----PAGIFNLPLLKMIELDHNLLSGE----IPENLSISDSLNQLKVAYNNIAGKIPPSIG-----NLTNLNVLSLQ 384 (549)
Q Consensus 319 ~~-----~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~ 384 (549)
.. +..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 11112345555555555555432 223333445555555555555432221111 11355555555
Q ss_pred CCcCCCC----CccccccCCCCCEEEccCCcccccCCccccc-----CCCCcEEECCCCcCcc----cchhhhhCCCCCC
Q 046055 385 NNRFNGE----LPEEMFNLKVISLINVSSNNISGEIPTSISG-----CISLTTVDFSRNSLSG----EIPKAISQLRDLS 451 (549)
Q Consensus 385 ~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~i~~----~~~~~~~~~~~L~ 451 (549)
+|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 5554432 2233334455555555555544332222221 3455555555555543 3344444455555
Q ss_pred EEECCCCccc
Q 046055 452 ILNLSRNQLT 461 (549)
Q Consensus 452 ~L~l~~n~i~ 461 (549)
+|++++|+++
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 5555555554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.3e-33 Score=283.94 Aligned_cols=374 Identities=19% Similarity=0.136 Sum_probs=195.6
Q ss_pred CCCCEEEccCCCCccccchh-ccCCCCCceeecCCccccCc----cCCccccCCCCCCEEEccCccCCccCCccc-cCCC
Q 046055 87 QSLEYLGLNGIGLNGTAPVF-LSLLKNLREMYIGYFNTYTG----GIPPEFGTLSKLRVLDMASCNISGEIPASL-SQLK 160 (549)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~l~ 160 (549)
++|++|+++++.+....... +..+++|++|++++ +.+.. .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES-SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccC-CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34566666666655433222 55566666666665 33332 234445556666666666666654322222 2233
Q ss_pred ----CCCeEeccCcccccc----CCccccCCCCCCEEeCCCCcCccccCccc-----cCCCcCceeecccccCcccC---
Q 046055 161 ----LLDALFLQMNKLTGH----IHPELSGLISLTQLDLSLNCLTGEVPESF-----SALKNLSLVQLFKNNLRGPF--- 224 (549)
Q Consensus 161 ----~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~--- 224 (549)
+|++|++++|.+... .+..+..+++|++|++++|.+....+..+ ...++|++|++++|.+.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 466666666665532 23445566666666666666553322221 12345666666666655422
Q ss_pred -CccCCCCCCccEEEccCccccccCCcccc-----CCCCccEEECcCCccccc----CCccccCCCCccEEecccccccc
Q 046055 225 -PSFVGDYPNLEVLQVWGNNFTGELPENLG-----RNRKLLLLDVSSNQIEGK----IPRDLCKGERLKSLILMQNLFSG 294 (549)
Q Consensus 225 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~ 294 (549)
+..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+.+. ++..+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 23333456666666666665533222222 244666666666666542 23344455666666666665543
Q ss_pred CCC-----ccccCCCCCcEEEccCCcCccc----CCccCCCCCCCCEEEeecCcCccccCcccc-----CCCCCCEEEcc
Q 046055 295 PIP-----EELGACESLTKFRAMKNQLNGT----IPAGIFNLPLLKMIELDHNLLSGEIPENLS-----ISDSLNQLKVA 360 (549)
Q Consensus 295 ~~~-----~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~ 360 (549)
... ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 211 1122356666666666666532 344444566666666666665543322221 12466666666
Q ss_pred Cceeccc----CCcccccCCCCCEEEccCCcCCCCCcccccc-----CCCCCEEEccCCcccc----cCCcccccCCCCc
Q 046055 361 YNNIAGK----IPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-----LKVISLINVSSNNISG----EIPTSISGCISLT 427 (549)
Q Consensus 361 ~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~ 427 (549)
+|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+.+ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 6666543 2334455566666666666655433333321 4566666666666654 3445555666666
Q ss_pred EEECCCCcCcccchhhhh-----CCCCCCEEECCCCccc
Q 046055 428 TVDFSRNSLSGEIPKAIS-----QLRDLSILNLSRNQLT 461 (549)
Q Consensus 428 ~L~L~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~i~ 461 (549)
+|++++|.+++.....+. ...+|+.|++.++.+.
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 666666666543222211 1234666666555554
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.8e-31 Score=278.97 Aligned_cols=396 Identities=13% Similarity=0.032 Sum_probs=200.5
Q ss_pred CCCCCCEEEccCCCCccccchhccC-CC-CCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccC----Ccccc
Q 046055 85 EIQSLEYLGLNGIGLNGTAPVFLSL-LK-NLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEI----PASLS 157 (549)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~----~~~l~ 157 (549)
.+++|++|++++|.+....+..++. ++ +|++|+++++..... .++.....+++|++|++++|.+++.. +....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 3455555555555444433333333 22 255555554332111 11112234556666666666554331 12234
Q ss_pred CCCCCCeEeccCccccccC----CccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCc---ccCCccCCC
Q 046055 158 QLKLLDALFLQMNKLTGHI----HPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR---GPFPSFVGD 230 (549)
Q Consensus 158 ~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~ 230 (549)
.+++|++|+++.+.+.... +..+..+++|++|++++|.+.+ .+..+..+++|+.++++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4566666666666554221 1223455666666666666553 3445556666666666543221 122233455
Q ss_pred CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCCCccccCCCCCcEE
Q 046055 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309 (549)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 309 (549)
+++|+.++++++... .++..+..+++|++|++++|.+.+... ..+..+++|+.|++.++......+.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 667777777665332 455555666777777777776543222 223556677777666321111111222445666666
Q ss_pred EccC-----------CcCccc-CCccCCCCCCCCEEEeecCcCccccCccccC-CCCCCEEEcc----Cceeccc-----
Q 046055 310 RAMK-----------NQLNGT-IPAGIFNLPLLKMIELDHNLLSGEIPENLSI-SDSLNQLKVA----YNNIAGK----- 367 (549)
Q Consensus 310 ~l~~-----------~~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~----~n~~~~~----- 367 (549)
++.+ +.+++. .......+++|++|++..+.+++..+..+.. +++|++|+++ .+.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 6662 333322 1111234666777777666665544444433 5666666665 3344421
Q ss_pred CCcccccCCCCCEEEccCCc--CCCCCccccc-cCCCCCEEEccCCcccccC-CcccccCCCCcEEECCCCcCccc-chh
Q 046055 368 IPPSIGNLTNLNVLSLQNNR--FNGELPEEMF-NLKVISLINVSSNNISGEI-PTSISGCISLTTVDFSRNSLSGE-IPK 442 (549)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~-~~~ 442 (549)
++..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.+++.. +..+.++++|++|++++|.+++. .+.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 22224456677777775443 3333333332 3566777777777665422 22335566777777777766533 233
Q ss_pred hhhCCCCCCEEECCCCcccccCCccc-cCCCCCCeEeCCCC
Q 046055 443 AISQLRDLSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYN 482 (549)
Q Consensus 443 ~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~n 482 (549)
....+++|+.|++++|+++......+ ..+|.+....+..+
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 34556677777777777664433333 23455555444443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2e-27 Score=239.05 Aligned_cols=232 Identities=19% Similarity=0.161 Sum_probs=154.9
Q ss_pred CccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEcc
Q 046055 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360 (549)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 360 (549)
+++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 44455555555544444455555556666666665554555556666666666666666665555556666777777777
Q ss_pred CceecccCCcccccCCCCCEEEccCCc-CCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCccc
Q 046055 361 YNNIAGKIPPSIGNLTNLNVLSLQNNR-FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGE 439 (549)
Q Consensus 361 ~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~ 439 (549)
+|.+.+..+..|..+++|++|++++|. +....+..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence 777765555566777777777777643 3322333566777777777777777633 2 466777777888888877776
Q ss_pred chhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCC
Q 046055 440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNV 514 (549)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~ 514 (549)
.+..|..+++|+.|++++|+++...+..+..+++|+.|++++|++.+..+.. ..+++|+.+++++||+.|+|+..
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 6777777778888888888877777777777778888888888777555543 45777788888888888877654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=237.89 Aligned_cols=232 Identities=19% Similarity=0.177 Sum_probs=150.4
Q ss_pred CccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEcc
Q 046055 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360 (549)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 360 (549)
+++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44445555554444444455555555555555555554444555566666666666666665555556666666666666
Q ss_pred CceecccCCcccccCCCCCEEEccCCc-CCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCccc
Q 046055 361 YNNIAGKIPPSIGNLTNLNVLSLQNNR-FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGE 439 (549)
Q Consensus 361 ~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~ 439 (549)
+|.+.+..+..|..+++|++|++++|. +....+..|..+++|+.|++++|.+.. +| .+..+++|++|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 666665555566667777777777643 332233356667777777777777662 33 366677777777777777766
Q ss_pred chhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCC
Q 046055 440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNV 514 (549)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~ 514 (549)
.+..|..+++|+.|++++|+++...+..|..+++|++|++++|++....+.. ..+++|+.+++++||+.|+|+..
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 6777777777777777777777777777777777777777777777555543 45677777888888888877654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.2e-28 Score=233.00 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=176.7
Q ss_pred CCccEEeccccccccCCCccccCCCCCcEEEccCCcCccc--CCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEE
Q 046055 280 ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL 357 (549)
Q Consensus 280 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 357 (549)
+++++|++++|.+.......+..+++|++|++++|.+... .+..+..+++|++|++++|.+.. .+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 3555555555555544444455666666666666665422 23445567778888888887764 34456777888888
Q ss_pred EccCceecccCC-cccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccc-cCCcccccCCCCcEEECCCCc
Q 046055 358 KVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG-EIPTSISGCISLTTVDFSRNS 435 (549)
Q Consensus 358 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~ 435 (549)
++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 888888875544 567788888888888888876777778888888888888888875 467778888888888888888
Q ss_pred CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCC-CCCCccccCCCCCCCCCCC
Q 046055 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHF-PAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~l~~l~l~~n~~~~~~~~ 513 (549)
+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|++.+..|.. ..+ ++|+.+++++|++.|.|..
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 88777788888888888888888888776667888888888888888888777654 455 4888888888888888776
Q ss_pred CCCCCCc
Q 046055 514 VTCLPSI 520 (549)
Q Consensus 514 ~~~~~~~ 520 (549)
.....|+
T Consensus 267 ~~~~~~l 273 (306)
T 2z66_A 267 QSFLQWI 273 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=237.71 Aligned_cols=279 Identities=17% Similarity=0.154 Sum_probs=218.9
Q ss_pred CCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055 207 LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI 286 (549)
Q Consensus 207 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 286 (549)
++.....+.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-cccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 455556777788777 444433 35899999999999876666888999999999999999877777788899999999
Q ss_pred ccccccccCCCccccCCCCCcEEEccCCcCcccCC-ccCCCCCCCCEEEeecC-cCccccCccccCCCCCCEEEccCcee
Q 046055 287 LMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIP-AGIFNLPLLKMIELDHN-LLSGEIPENLSISDSLNQLKVAYNNI 364 (549)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n~~ 364 (549)
+++|.++...+..+..+++|++|++++|++.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999987666668889999999999998884333 36778999999999998 46666677788889999999999999
Q ss_pred cccCCcccccCCCCCEEEccCCcCCCCCccc-cccCCCCCEEEccCCcccccCCccc---ccCCCCcEEECCCCcCcc--
Q 046055 365 AGKIPPSIGNLTNLNVLSLQNNRFNGELPEE-MFNLKVISLINVSSNNISGEIPTSI---SGCISLTTVDFSRNSLSG-- 438 (549)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~i~~-- 438 (549)
.+..+..+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+.+..+..+ ...+.++.++++++.+.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred CccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 8888888889999999999999886 44443 4468899999999998876544433 245678888888888775
Q ss_pred --cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055 439 --EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 439 --~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 489 (549)
.+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++.+..|
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 356677888888888888888884444445788888888888888876554
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-30 Score=272.13 Aligned_cols=395 Identities=12% Similarity=0.025 Sum_probs=227.9
Q ss_pred CCCCcCEEEccCCcceeccCccccCC--CCCCEEEccCCCC-ccc-cchhccCCCCCceeecCCccccCcc----CCccc
Q 046055 61 SLKNLKHLSFGGNYFSGEIPESYSEI--QSLEYLGLNGIGL-NGT-APVFLSLLKNLREMYIGYFNTYTGG----IPPEF 132 (549)
Q Consensus 61 ~l~~L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~l~~~~~-~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~ 132 (549)
.+++|++|++++|.+.+..+..+... .+|++|++.+|.. ... .+.....+++|++|++++ +.+.+. ++...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE-SSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT-CEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc-ccccCcchhHHHHHH
Confidence 45666666666665554433333332 2366666666541 111 111223566666666666 333222 22233
Q ss_pred cCCCCCCEEEccCccCC----ccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCc---cccCcccc
Q 046055 133 GTLSKLRVLDMASCNIS----GEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLT---GEVPESFS 205 (549)
Q Consensus 133 ~~~~~L~~L~l~~~~i~----~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~ 205 (549)
..+++|++|+++++.++ +..+..+..+++|+.|++.+|.+.+ .+..+..+++|++|+++..... ......+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 45666667776666664 1223334456667777776666653 2344566667777766642211 12233445
Q ss_pred CCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC-ccccCCCCccEEECcCCcccccCCccccCCCCccE
Q 046055 206 ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP-ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKS 284 (549)
Q Consensus 206 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 284 (549)
.+++|+.+++.++... .++..+..+++|++|++++|.++.... ..+..+++|+.|+++++......+.....+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 5666777666654322 344455556677777777776543222 22456677777777632222122222345667777
Q ss_pred Eeccc-----------cccccCCC-ccccCCCCCcEEEccCCcCcccCCccCCC-CCCCCEEEee----cCcCccc----
Q 046055 285 LILMQ-----------NLFSGPIP-EELGACESLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELD----HNLLSGE---- 343 (549)
Q Consensus 285 L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~----~~~l~~~---- 343 (549)
|++++ +.++.... .....+++|++|++..+.+++..+..+.. +++|+.|+++ .+.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 77773 33332111 11345778888888777776555544443 7888888886 4455532
Q ss_pred -cCccccCCCCCCEEEccCce--ecccCCccc-ccCCCCCEEEccCCcCCCC-CccccccCCCCCEEEccCCcccccCC-
Q 046055 344 -IPENLSISDSLNQLKVAYNN--IAGKIPPSI-GNLTNLNVLSLQNNRFNGE-LPEEMFNLKVISLINVSSNNISGEIP- 417 (549)
Q Consensus 344 -~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~- 417 (549)
.+..+..+++|++|++++|. +++.....+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|++++...
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 11224567889999987544 443333223 3478899999999988653 34455678999999999999764433
Q ss_pred cccccCCCCcEEECCCCcCcccchhhh-hCCCCCCEEECCCC
Q 046055 418 TSISGCISLTTVDFSRNSLSGEIPKAI-SQLRDLSILNLSRN 458 (549)
Q Consensus 418 ~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~l~~n 458 (549)
.....+++|++|++++|+++......+ ..++.++...+..+
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 334578999999999999886543333 45677766666655
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=230.91 Aligned_cols=279 Identities=15% Similarity=0.129 Sum_probs=153.5
Q ss_pred CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310 (549)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 310 (549)
++.....+.+++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344444555555555 3444332 3566666666666554444555666666666666666655555566666666666
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCc-eecccCCcccccCCCCCEEEccCCcC
Q 046055 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYN-NIAGKIPPSIGNLTNLNVLSLQNNRF 388 (549)
Q Consensus 311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l 388 (549)
+++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666653333335556666666666666654433 34555666666666665 34444445556666666666666666
Q ss_pred CCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhh---hCCCCCCEEECCCCcccc---
Q 046055 389 NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI---SQLRDLSILNLSRNQLTG--- 462 (549)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~i~~--- 462 (549)
.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ .....++.++++++.+.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 55555566666666666666666543222233345666666666666654332222 234455566666655543
Q ss_pred -cCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCC
Q 046055 463 -PIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPR 512 (549)
Q Consensus 463 -~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~ 512 (549)
.+|..+..+++|++|++++|++....+.. +.+++|+.+++++||+.|.|+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23444555666666666666666333332 455666666666666666554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.3e-27 Score=222.50 Aligned_cols=228 Identities=20% Similarity=0.209 Sum_probs=109.0
Q ss_pred cCceeecccccCcccCCccCCCCCCccEEEccCcccccc--CCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055 209 NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE--LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI 286 (549)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 286 (549)
++++|++++|.+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 444445544444433333344455555555555544421 12333445555555555555542 333344445555555
Q ss_pred ccccccccCCC-ccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceec
Q 046055 287 LMQNLFSGPIP-EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA 365 (549)
Q Consensus 287 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 365 (549)
+++|.+....+ ..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 108 l~~n~l~~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLS------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CTTSEEESSTTTTTTTT------------------------CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccccccchhhhh------------------------ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 55544443322 23333 444444444444444444444444445555555555444
Q ss_pred c-cCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhh
Q 046055 366 G-KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444 (549)
Q Consensus 366 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 444 (549)
+ ..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 3 244444555555555555555544444445555555555555555544444445555555555555555554444444
Q ss_pred hCCC-CCCEEECCCCccc
Q 046055 445 SQLR-DLSILNLSRNQLT 461 (549)
Q Consensus 445 ~~~~-~L~~L~l~~n~i~ 461 (549)
..++ +|+.|++++|.++
T Consensus 244 ~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCTTCCEEECTTCCEE
T ss_pred HhhhccCCEEEccCCCee
Confidence 4442 5555555555554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.7e-27 Score=220.72 Aligned_cols=248 Identities=19% Similarity=0.157 Sum_probs=125.8
Q ss_pred CccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCc-CcccCCccCCCCCCCCEEEe
Q 046055 257 KLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ-LNGTIPAGIFNLPLLKMIEL 335 (549)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l 335 (549)
+++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 34444444444433333333334444444444444433333344444444455554443 33333444555555555555
Q ss_pred ecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccccc
Q 046055 336 DHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE 415 (549)
Q Consensus 336 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (549)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 55555555555555555566666666655544444455566666666666666533444455566666666666666655
Q ss_pred CCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC---C
Q 046055 416 IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG---G 492 (549)
Q Consensus 416 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~---~ 492 (549)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...-+ ...-...++.+..+.+.+....|.. .
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHhcccccCccccCCchHhCCc
Confidence 55566666666666666666665555556666666666666666652111 0011122334444555555555432 2
Q ss_pred CCCCCCccccCCC
Q 046055 493 HFPAFDEASFAGN 505 (549)
Q Consensus 493 ~~~~l~~l~l~~n 505 (549)
.+..++..++.||
T Consensus 272 ~l~~l~~~~l~~C 284 (285)
T 1ozn_A 272 DLKRLAANDLQGC 284 (285)
T ss_dssp BGGGSCGGGSCCC
T ss_pred ChhhcCHHHhccC
Confidence 2334444444444
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=229.58 Aligned_cols=246 Identities=20% Similarity=0.205 Sum_probs=131.0
Q ss_pred CceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccc
Q 046055 210 LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQ 289 (549)
Q Consensus 210 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 289 (549)
...++..+..+. .+|..+ .++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 333333 25667777777776655556666667777777777766655555566666666666666
Q ss_pred cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecC-cCccccCccccCCCCCCEEEccCceecccC
Q 046055 290 NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN-LLSGEIPENLSISDSLNQLKVAYNNIAGKI 368 (549)
Q Consensus 290 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (549)
|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|++|++++|.+. .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 6666555455555556666666655555444444555555555555553 222233334444555555555555554 22
Q ss_pred CcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCC
Q 046055 369 PPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLR 448 (549)
Q Consensus 369 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 448 (549)
| .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 2 244445555555555555444444444555555555555555444444444555555555555555444444444445
Q ss_pred CCCEEECCCCcc
Q 046055 449 DLSILNLSRNQL 460 (549)
Q Consensus 449 ~L~~L~l~~n~i 460 (549)
+|+.|++++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 555555555544
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.2e-27 Score=221.65 Aligned_cols=248 Identities=19% Similarity=0.217 Sum_probs=148.2
Q ss_pred cEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecC
Q 046055 259 LLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN 338 (549)
Q Consensus 259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (549)
+.++.+++.+.. +|..+ .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666552 33222 356777777777776665556666666777777666666555666666666666666666
Q ss_pred c-CccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCC
Q 046055 339 L-LSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIP 417 (549)
Q Consensus 339 ~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (549)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 555555556666666666666666665555556666666666666666664444455566666666666666664444
Q ss_pred cccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCC
Q 046055 418 TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAF 497 (549)
Q Consensus 418 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l 497 (549)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|++....+..+....+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 45666666666666666666555666666666666666666666544455666666666666666665433322222334
Q ss_pred CccccCCCCCCC
Q 046055 498 DEASFAGNPNLC 509 (549)
Q Consensus 498 ~~l~l~~n~~~~ 509 (549)
+.+....+...|
T Consensus 251 ~~~~~~~~~~~c 262 (285)
T 1ozn_A 251 QKFRGSSSEVPC 262 (285)
T ss_dssp HHCCSEECCCBE
T ss_pred HhcccccCcccc
Confidence 444444444444
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.1e-26 Score=229.49 Aligned_cols=246 Identities=20% Similarity=0.171 Sum_probs=125.4
Q ss_pred ceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccc
Q 046055 211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290 (549)
Q Consensus 211 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 290 (549)
..++..+..+. .+|..+ .+++++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34444444444 233322 245666666666666555555666666666666666665554455555555555555555
Q ss_pred ccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc
Q 046055 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP 370 (549)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (549)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. .+....+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~~ 190 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISEG 190 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECTT
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccChh
Confidence 5554444445555555555555555443333344444555555554422 22222223
Q ss_pred ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055 371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450 (549)
Q Consensus 371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L 450 (549)
.|..+++|++|++++|.++ .+| .+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|
T Consensus 191 ~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 3444555555555555554 222 24445555555555555554445555555555555555555554445555555555
Q ss_pred CEEECCCCcccccCCccccCCCCCCeEeCCCCCC
Q 046055 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484 (549)
Q Consensus 451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 484 (549)
+.|++++|+++...+..+..+++|+.|++++|++
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5555555555544444455555555555555554
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.3e-26 Score=219.24 Aligned_cols=225 Identities=19% Similarity=0.275 Sum_probs=155.8
Q ss_pred CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL 335 (549)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 335 (549)
++++.|++++|.+. .+|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44455555555544 33444444555555555555554 33444555566666666666655 55666666666777777
Q ss_pred ecCcCccccCcccc---------CCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055 336 DHNLLSGEIPENLS---------ISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN 406 (549)
Q Consensus 336 ~~~~l~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (549)
++|.+.+..|..+. .+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 76666555555443 3777888888888777 66667777888888888888877 4566677788888888
Q ss_pred ccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055 407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 485 (549)
+++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888877777777888888888888888777777777888888888888888877778888888888888888766655
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.8e-26 Score=216.68 Aligned_cols=234 Identities=18% Similarity=0.230 Sum_probs=169.4
Q ss_pred CcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEec
Q 046055 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL 287 (549)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 287 (549)
.+++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666666666655 34444445566666666666665 55555555666666666666555 44555555555555555
Q ss_pred cccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc
Q 046055 288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK 367 (549)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 367 (549)
++|.+.+..+..+.. . .....+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 555444333322211 0 01112334888999999999888 666778888899999999999884
Q ss_pred CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCC
Q 046055 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQL 447 (549)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~ 447 (549)
++..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 56678889999999999998888888889999999999999999888888889999999999999999988999999999
Q ss_pred CCCCEEECCCCccc
Q 046055 448 RDLSILNLSRNQLT 461 (549)
Q Consensus 448 ~~L~~L~l~~n~i~ 461 (549)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 99999999887765
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7.9e-30 Score=266.69 Aligned_cols=444 Identities=14% Similarity=0.136 Sum_probs=213.8
Q ss_pred cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcC---CCCcc------------ccCCCCcCEEEccCCcceeccCc
Q 046055 17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTG---PLPVE------------IVSLKNLKHLSFGGNYFSGEIPE 81 (549)
Q Consensus 17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~------------l~~l~~L~~L~ls~~~~~~~~~~ 81 (549)
+.++++++.. ..+..++..+++|++|+++++.... ..|.. ...+++|++|++++|.+.+..+.
T Consensus 46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 4666665543 2455666688888888888874321 11111 23456677777776665544443
Q ss_pred ccc-CCCCCCEEEccCC-CCccc-cchhccCCCCCceeecCCccccCccCCc----cccCCCCCCEEEccCcc--CCcc-
Q 046055 82 SYS-EIQSLEYLGLNGI-GLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPP----EFGTLSKLRVLDMASCN--ISGE- 151 (549)
Q Consensus 82 ~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~--i~~~- 151 (549)
.+. .+++|++|++.+| .+... .+.....+++|++|++++ +.+.+..+. ....+++|++|++++|. ++..
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE-SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT-CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC-CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 443 4566666666666 23221 222233556666666655 223222111 12244455555555553 1110
Q ss_pred CCccccCCCCCCeEeccCc-cccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCC
Q 046055 152 IPASLSQLKLLDALFLQMN-KLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGD 230 (549)
Q Consensus 152 ~~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 230 (549)
.......+++|+.|++.+| .+.+ .+..+..+++|++|+++.+... +..+.+.+ ++..+..
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~ 263 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSG 263 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhc
Confidence 1111123445555555544 1211 2223334445555544332110 00000110 1112233
Q ss_pred CCCccEE-EccCccccccCCccccCCCCccEEECcCCcccccCCc-cccCCCCccEEeccccccccCCC-ccccCCCCCc
Q 046055 231 YPNLEVL-QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPR-DLCKGERLKSLILMQNLFSGPIP-EELGACESLT 307 (549)
Q Consensus 231 ~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 307 (549)
+++|+.+ .+.+... ..++..+..+++|++|++++|.+.+.... .+..+++|++|++.+| +..... .....+++|+
T Consensus 264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 4444444 2222111 12222223345555555555554321111 1234455555555554 221100 1112345555
Q ss_pred EEEccC---------CcCcccCCccCC-CCCCCCEEEeecCcCccccCcccc-CCCCCCEEEcc--C----ceecc----
Q 046055 308 KFRAMK---------NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLS-ISDSLNQLKVA--Y----NNIAG---- 366 (549)
Q Consensus 308 ~L~l~~---------~~l~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~---- 366 (549)
+|++.+ +.+++.....+. .+++|+.|.+..+.+++.....+. .+++|++|+++ + +.+++
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 555522 222221111111 366777776666666544433332 35677777776 2 23331
Q ss_pred -cCCcccccCCCCCEEEccCCcCCCCCcccccc-CCCCCEEEccCCcccccCCccc-ccCCCCcEEECCCCcCcccchh-
Q 046055 367 -KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-LKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPK- 442 (549)
Q Consensus 367 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~- 442 (549)
.++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+ .++++|++|++++|.+++....
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 1112245677788888866 444344444443 6778888888887765444444 5577888888888887544333
Q ss_pred hhhCCCCCCEEECCCCcccccCCccc-cCCCCCCeEeCCCCCCc
Q 046055 443 AISQLRDLSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 443 ~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~n~~~ 485 (549)
....+++|+.|++++|.++......+ ..+|.++...+..+.-.
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 34456788888888887754433333 44666766666655444
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=228.69 Aligned_cols=248 Identities=18% Similarity=0.148 Sum_probs=160.7
Q ss_pred CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL 335 (549)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 335 (549)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. + ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence 344444444444443333344444444444444444433221 44555555555555555421 1 2367777777
Q ss_pred ecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccc-cCCCCCEEEccCCcccc
Q 046055 336 DHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISG 414 (549)
Q Consensus 336 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ 414 (549)
++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 77777755443 246788888888888766666777788888888888888765555553 67888888888888875
Q ss_pred cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc-ccCCCC-C
Q 046055 415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN-GEVPSG-G 492 (549)
Q Consensus 415 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~-~ 492 (549)
.. ....+++|++|++++|.+++. +..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|.. +
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 42 233478888888888888854 444778888888888888888 45667888888888888888887 444432 5
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCC
Q 046055 493 HFPAFDEASFAGNPNLCLPRNVTCL 517 (549)
Q Consensus 493 ~~~~l~~l~l~~n~~~~~~~~~~~~ 517 (549)
.++.++.+++.+|+.+.......|.
T Consensus 260 ~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 260 KNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp TCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred ccccceEEECCCchhccCCchhccC
Confidence 6677888888765544443333333
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-29 Score=264.83 Aligned_cols=433 Identities=15% Similarity=0.121 Sum_probs=271.1
Q ss_pred ccCCCcccEEEccCCCCCCcC---C-----------hhhhhCCCCCcEEEccCCCCcCCCCcccc-CCCCcCEEEccCC-
Q 046055 10 SKPKMSLKVLNISGNGFQDYF---P-----------GQIVVGMTELEVLDAFNNNFTGPLPVEIV-SLKNLKHLSFGGN- 73 (549)
Q Consensus 10 ~~~~~~L~~L~Ls~~~~~~~~---~-----------~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~ls~~- 73 (549)
+..+++|++|+++++...... + ..++..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456789999999998632111 1 23445789999999999988865555564 6899999999999
Q ss_pred cceec-cCccccCCCCCCEEEccCCCCccccchhcc----CCCCCceeecCCcc-ccCc-cCCccccCCCCCCEEEccCc
Q 046055 74 YFSGE-IPESYSEIQSLEYLGLNGIGLNGTAPVFLS----LLKNLREMYIGYFN-TYTG-GIPPEFGTLSKLRVLDMASC 146 (549)
Q Consensus 74 ~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~ 146 (549)
.+.+. ++....++++|++|++++|.+....+..+. .+++|++|+++++. .+.. .+...+..+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 44422 444455789999999999987765554443 67799999999843 1211 12222345799999999998
Q ss_pred cCCccCCccccCCCCCCeEeccCcc-------ccccCCccccCCCCCCEE-eCCCCcCccccCccccCCCcCceeecccc
Q 046055 147 NISGEIPASLSQLKLLDALFLQMNK-------LTGHIHPELSGLISLTQL-DLSLNCLTGEVPESFSALKNLSLVQLFKN 218 (549)
Q Consensus 147 ~i~~~~~~~l~~l~~L~~L~l~~~~-------l~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 218 (549)
.-.+..+..+..+++|+.|.+..+. +.+. +..+.++++|+.+ .+.+... ...+..+..+++|++|++++|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence 3222366677888999999966543 2221 2356777888888 3433222 133344445677888888777
Q ss_pred cCccc-CCccCCCCCCccEEEccCcccccc-CCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055 219 NLRGP-FPSFVGDYPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296 (549)
Q Consensus 219 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 296 (549)
.+.+. +...+..+++|++|++++| +... .+.....+++|+.|++.++.-.+ ....+.+++..
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~ 363 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQG 363 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHH
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHH
Confidence 75532 1222445677777777776 3221 22222346667777664321000 00011111110
Q ss_pred Cccc-cCCCCCcEEEccCCcCcccCCccCC-CCCCCCEEEee--c----CcCcccc-----CccccCCCCCCEEEccCce
Q 046055 297 PEEL-GACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELD--H----NLLSGEI-----PENLSISDSLNQLKVAYNN 363 (549)
Q Consensus 297 ~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~--~----~~l~~~~-----~~~~~~~~~L~~L~l~~n~ 363 (549)
...+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++... +..+..+++|++|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 0111 2355666665555555443333332 46778888887 2 3333111 11245678899999977 5
Q ss_pred ecccCCccccc-CCCCCEEEccCCcCCCCCcccc-ccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECCCCcCcccc
Q 046055 364 IAGKIPPSIGN-LTNLNVLSLQNNRFNGELPEEM-FNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFSRNSLSGEI 440 (549)
Q Consensus 364 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~~~~ 440 (549)
+++.....+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.... ....+++|+.|++++|.++...
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 55443334443 7899999999998865555444 5689999999999998644333 3455899999999999996554
Q ss_pred hhhh-hCCCCCCEEECCCCccc
Q 046055 441 PKAI-SQLRDLSILNLSRNQLT 461 (549)
Q Consensus 441 ~~~~-~~~~~L~~L~l~~n~i~ 461 (549)
...+ ..+++|+...+..+.-.
T Consensus 523 ~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHhCCCCEEEEecCCCcc
Confidence 4445 56788877777766544
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.4e-25 Score=204.28 Aligned_cols=207 Identities=19% Similarity=0.199 Sum_probs=161.0
Q ss_pred CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384 (549)
Q Consensus 305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 384 (549)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3556666666666 4554332 567888888888877766677778888888888888876556667788888888888
Q ss_pred CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI 464 (549)
Q Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 464 (549)
+|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|+++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88887555666778888888888888888777777888888888888888888666666888888888888888888777
Q ss_pred CccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCC
Q 046055 465 PTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNV 514 (549)
Q Consensus 465 ~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~ 514 (549)
+..+..+++|++|++++|++.+..+. ...+++|+.+++++||+.|.|...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 77788888899999998888865554 356788888999999998888643
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.1e-24 Score=204.81 Aligned_cols=208 Identities=23% Similarity=0.208 Sum_probs=169.9
Q ss_pred ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379 (549)
Q Consensus 300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 379 (549)
+..+++++++++.++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 455667777777777776 4554442 6788888888888877777788888888888888888754332 6788899
Q ss_pred EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055 380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459 (549)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 459 (549)
+|++++|.+. .+|..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999887 777788888999999999999987777788899999999999999987777778888999999999999
Q ss_pred ccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCC
Q 046055 460 LTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 460 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~ 513 (549)
++...+..+..+++|+.|++++|++...++.....++|+.+++++||+.|.|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 986666677889999999999999996666666778899999999999998864
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.2e-27 Score=224.88 Aligned_cols=259 Identities=17% Similarity=0.145 Sum_probs=168.6
Q ss_pred CCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcC
Q 046055 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS 265 (549)
Q Consensus 186 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 265 (549)
++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444555555554444444556677777777777766555566667777777777777664332 56666677777776
Q ss_pred CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC
Q 046055 266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP 345 (549)
Q Consensus 266 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 345 (549)
|.+.+. ...++|+.|++++| .+.+..+. .+++|++|++++|.+.+..+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n------------------------~l~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANN------------------------NISRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSS------------------------CCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Cccccc-----cCCCCcCEEECCCC------------------------ccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 666522 12245555555554 44322221 24567777777777766666
Q ss_pred ccccCCCCCCEEEccCceecccCCccc-ccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCC
Q 046055 346 ENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI 424 (549)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 424 (549)
..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|++.+ .+..+..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccC
Confidence 566666777777777777775555444 3567788888888777633 32 2247778888888888774 344477788
Q ss_pred CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc-ccCCccccCCCCCCeEeCCCC
Q 046055 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT-GPIPTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n 482 (549)
+|++|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..+++|+.+++++|
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 8888888888887 45666777788888888888887 556667777788888888744
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1e-24 Score=204.33 Aligned_cols=216 Identities=19% Similarity=0.191 Sum_probs=160.9
Q ss_pred CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055 304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383 (549)
Q Consensus 304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 383 (549)
+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666677777666555556667777777777777777666667777778888888888887666677778888888888
Q ss_pred cCCcCCCCCccccccCCCCCEEEccCCccccc-CCcccccCCCCcEEECCCCcCcccchhhhhCCCCCC----EEECCCC
Q 046055 384 QNNRFNGELPEEMFNLKVISLINVSSNNISGE-IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLS----ILNLSRN 458 (549)
Q Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~----~L~l~~n 458 (549)
++|.+.+..+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888755555677888888888888888753 477788888888888888888876666666666666 8888888
Q ss_pred cccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 046055 459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSI 520 (549)
Q Consensus 459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 520 (549)
.++...+..+. ..+|++|++++|.+.+.++.. ..+++|+.+++++||+.|.|+....+..|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 88866555444 347888888888888665554 66888888999999998888655444333
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-26 Score=221.36 Aligned_cols=246 Identities=22% Similarity=0.260 Sum_probs=117.3
Q ss_pred CCCccEEEccCccccccCCccccCCCCccEEECcCCcccc-cCCcccc-------CCCCccEEeccccccccCCCccccC
Q 046055 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG-KIPRDLC-------KGERLKSLILMQNLFSGPIPEELGA 302 (549)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~ 302 (549)
.++|+++++++|.+ .+|..+... ++.|++++|.+.. ..+..+. .+++|++|++++|.+.+..+..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-- 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL-- 115 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS--
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH--
Confidence 44566666666666 344433322 6666666666532 2222222 34555555555555544433332
Q ss_pred CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCC-----CCCCEEEccCceecccCCcccccCCC
Q 046055 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS-----DSLNQLKVAYNNIAGKIPPSIGNLTN 377 (549)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~ 377 (549)
.+..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++
T Consensus 116 --------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 116 --------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp --------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred --------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 003444455555555544443 3333322 45555555555554444444555555
Q ss_pred CCEEEccCCcCCCC--Ccccc--ccCCCCCEEEccCCccccc---CCcccccCCCCcEEECCCCcCcccch-hhhhCCCC
Q 046055 378 LNVLSLQNNRFNGE--LPEEM--FNLKVISLINVSSNNISGE---IPTSISGCISLTTVDFSRNSLSGEIP-KAISQLRD 449 (549)
Q Consensus 378 L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~ 449 (549)
|++|++++|++.+. .+..+ ..+++|++|++++|.+.+. ....+..+++|++|++++|.+++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 55555555554322 11222 4455555555555555411 11122344555555555555554332 23334455
Q ss_pred CCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055 450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN 507 (549)
Q Consensus 450 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~ 507 (549)
|+.|++++|+++ .+|..+. ++|++|++++|++.+. |....+++|+.+++++|++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 555555555555 3343333 4555555555555543 4455555555555555554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1e-26 Score=221.63 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=178.9
Q ss_pred cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccc-cCCcccc-------CCCCccEEECcCCcccccCCc
Q 046055 203 SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPENLG-------RNRKLLLLDVSSNQIEGKIPR 274 (549)
Q Consensus 203 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~ 274 (549)
.+...++|+.+++.+|.+ .+|..+.. .++.|++++|.+.. ..+..+. .+++|++|++++|.+.+..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345668899999999998 45554433 38999999998853 4454444 689999999999999987777
Q ss_pred cc--cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCC
Q 046055 275 DL--CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD 352 (549)
Q Consensus 275 ~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 352 (549)
.+ ..+++|++|++++|.+.+. +..+..+. ...+++|++|++++|.+.+..+..+..++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 66 7788888888888887755 44333320 00125566666666666655556666666
Q ss_pred CCCEEEccCceeccc--CCcc--cccCCCCCEEEccCCcCCCC--Cc-cccccCCCCCEEEccCCcccccCC-cccccCC
Q 046055 353 SLNQLKVAYNNIAGK--IPPS--IGNLTNLNVLSLQNNRFNGE--LP-EEMFNLKVISLINVSSNNISGEIP-TSISGCI 424 (549)
Q Consensus 353 ~L~~L~l~~n~~~~~--~~~~--~~~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 424 (549)
+|++|++++|++.+. .+.. +..+++|++|++++|.+++. ++ ..+..+++|+.|++++|.+.+..+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 666666666665432 1222 36777888888888877621 11 233467888888888888876553 4456678
Q ss_pred CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
+|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++.+
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888888888887 5565554 7888889998888855 54 7888888999999888873
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.7e-26 Score=227.77 Aligned_cols=245 Identities=19% Similarity=0.163 Sum_probs=175.2
Q ss_pred CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310 (549)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 310 (549)
+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. + +..+++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~--l~~l~~L~~L~ 86 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------------------------D--LESLSTLRTLD 86 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------------------------E--CTTCTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------------------------c--cccCCCCCEEE
Confidence 345555555555555444445555555555555555554322 1 44555555555
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC
Q 046055 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390 (549)
Q Consensus 311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 390 (549)
+++|.+.+. + ..++|+.|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 87 Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 87 LNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCSSEEEEE-E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred ecCCcCCCC-C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 555555421 1 226788888888888766544 34778889999998887777788888999999999999887
Q ss_pred CCccccc-cCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055 391 ELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ 469 (549)
Q Consensus 391 ~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 469 (549)
..|..+. .+++|+.|++++|.+.+..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.++. +|..+.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred cChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhc
Confidence 7777775 78999999999999875532 3458899999999999986444 48888999999999999994 566788
Q ss_pred CCCCCCeEeCCCCCCc-ccCCC-CCCCCCCCccccC-------CCCCCCCCCC
Q 046055 470 DMMSLTTLDLSYNNLN-GEVPS-GGHFPAFDEASFA-------GNPNLCLPRN 513 (549)
Q Consensus 470 ~l~~L~~L~l~~n~~~-~~~p~-~~~~~~l~~l~l~-------~n~~~~~~~~ 513 (549)
.+++|+.|++++|++. +.+|. .+.++.++.+.+. +++..|.+..
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 8999999999999998 33332 3567778878876 7888887643
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.9e-23 Score=213.73 Aligned_cols=261 Identities=27% Similarity=0.289 Sum_probs=139.4
Q ss_pred CCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240 (549)
Q Consensus 161 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (549)
+++.|+++++.+..+ +..+. ++|++|++++|.++. .|. .+++|++|++++|++.. +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 466666666666633 33332 466666666666652 222 34556666666665552 222 34556666666
Q ss_pred CccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccC
Q 046055 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320 (549)
Q Consensus 241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 320 (549)
+|.+++ +|. .+++|+.|++++|.+.. +|.. +++ |++|++++|.+. .+
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~------------------------L~~L~Ls~N~l~-~l 156 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG------------------------LQELSVSDNQLA-SL 156 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTT------------------------CCEEECCSSCCS-CC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCC------------------------CCEEECcCCcCC-Cc
Confidence 655552 222 34455555555555542 2221 244 444555544444 22
Q ss_pred CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCC
Q 046055 321 PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLK 400 (549)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (549)
|. .+++|+.|++++|.+.+.. ..+++|+.|++++|.+.+ +|. ..++|+.|++++|.++ .+|.. ++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CT
T ss_pred CC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CC
Confidence 22 2345555555555555322 234556666666666553 222 1355666666666665 33332 35
Q ss_pred CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCC
Q 046055 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS 480 (549)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 480 (549)
+|+.|++++|.+.+ +| ..+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 66666666666653 33 334566666666666663 333 4466667777777666 455566666677777777
Q ss_pred CCCCcccCC
Q 046055 481 YNNLNGEVP 489 (549)
Q Consensus 481 ~n~~~~~~p 489 (549)
+|++.+.+|
T Consensus 293 ~N~l~~~~~ 301 (622)
T 3g06_A 293 GNPLSERTL 301 (622)
T ss_dssp SCCCCHHHH
T ss_pred CCCCCCcCH
Confidence 776665444
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.6e-23 Score=211.05 Aligned_cols=265 Identities=25% Similarity=0.306 Sum_probs=143.8
Q ss_pred CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055 137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216 (549)
Q Consensus 137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 216 (549)
+++.|+++++.++ .+|..+. ++|+.|++++|.+..+.. .+++|++|++++|.++. .|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4666666666666 4444443 567777777776664322 35677777777777663 333 45777777777
Q ss_pred cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296 (549)
Q Consensus 217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 296 (549)
+|.+... +. .+++|+.|++++|.++. +|.. +++|++|++++|.+.+ ++. .+++|+.|++++|.++...
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc
Confidence 7777643 32 45678888888887773 4442 4778888888887763 222 2355666666666555321
Q ss_pred CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT 376 (549)
Q Consensus 297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 376 (549)
..+++|+.|++++|.+.+ +|. ..++|+.|++++|.+.. ++. .++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-------------------------l~~---~~~ 221 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-------------------------LPA---LPS 221 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-------------------------CCC---CCT
T ss_pred ----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-------------------------cCC---CCC
Confidence 233445555555554442 222 12344555555544442 221 124
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
+|+.|++++|.++ .+| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 4555555555544 233 22345555555555554 2222 3445555555555555 344455555555555555
Q ss_pred CCcccccCCcccc
Q 046055 457 RNQLTGPIPTDMQ 469 (549)
Q Consensus 457 ~n~i~~~~~~~l~ 469 (549)
+|.+++..+..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 5555544444333
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.8e-23 Score=195.80 Aligned_cols=211 Identities=22% Similarity=0.164 Sum_probs=163.8
Q ss_pred CCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEc
Q 046055 280 ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359 (549)
Q Consensus 280 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 359 (549)
+++++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666665555556666677777777777776555556777788888888888887777777788888888888
Q ss_pred cCceecccCCcccccCCCCCEEEccCCcCCCC-CccccccCCCCCEEEccCCcccccCCcccccCCCCc----EEECCCC
Q 046055 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGE-LPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT----TVDFSRN 434 (549)
Q Consensus 360 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~L~~n 434 (549)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|++.+..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888866666788888999999999988753 578888899999999999998877677777777777 8999999
Q ss_pred cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC
Q 046055 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491 (549)
Q Consensus 435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 491 (549)
.+++..+..+. ..+|+.|++++|+++...+..+..+++|+.|++++|++....|..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 99865555444 458999999999999777777888999999999999998765543
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=219.81 Aligned_cols=220 Identities=19% Similarity=0.163 Sum_probs=188.4
Q ss_pred CCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEE
Q 046055 278 KGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL 357 (549)
Q Consensus 278 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 357 (549)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34477888888887777766778888889999999998875554 788999999999999988553 23899999
Q ss_pred EccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccc-cCCCCcEEECCCCcC
Q 046055 358 KVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS-GCISLTTVDFSRNSL 436 (549)
Q Consensus 358 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~i 436 (549)
++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999866554 468899999999999988888899999999999999999987888776 799999999999999
Q ss_pred cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCC
Q 046055 437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCL 510 (549)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~ 510 (549)
++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+.++..+.+++|+.+++++|++.|.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 86532 3468999999999999996555 58899999999999999998777778899999999999999964
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.5e-22 Score=188.61 Aligned_cols=185 Identities=20% Similarity=0.215 Sum_probs=129.8
Q ss_pred CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055 304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383 (549)
Q Consensus 304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 383 (549)
+++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 34555666666555444445566666677777666666555555566677777777777776555556677777777777
Q ss_pred cCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055 384 QNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463 (549)
Q Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 463 (549)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 77777756666677777777888877777755555677778888888888888766666677778888888888888766
Q ss_pred CCccccCCCCCCeEeCCCCCCcccC
Q 046055 464 IPTDMQDMMSLTTLDLSYNNLNGEV 488 (549)
Q Consensus 464 ~~~~l~~l~~L~~L~l~~n~~~~~~ 488 (549)
.+..+..+++|+.|++++|++....
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCC
Confidence 6666777888888888888776433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6e-22 Score=186.01 Aligned_cols=203 Identities=20% Similarity=0.205 Sum_probs=112.3
Q ss_pred ccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCC
Q 046055 252 LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLK 331 (549)
Q Consensus 252 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 331 (549)
+..+++++.++++++.+. .+|..+. +.++.|++++|.+....+ ..+..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~------------------------~~~~~l~~L~ 58 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL------------------------ATLMPYTRLT 58 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG------------------------GGGTTCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH------------------------HHhhcCCCCC
Confidence 344556666666666655 2333221 345555555555544433 4444455555
Q ss_pred EEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCc
Q 046055 332 MIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN 411 (549)
Q Consensus 332 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (549)
+|++++|.+.+..+. ..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus 59 ~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 59 QLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 555555555433221 34455555555555555 344455556666666666666654444555666666666666666
Q ss_pred ccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055 412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 412 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 485 (549)
+....+..|..+++|+.|++++|+++...+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 65554555556666666666666666444445556666666666666666 44455555556666666666654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.3e-22 Score=187.55 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=146.3
Q ss_pred cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ 356 (549)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 356 (549)
..+++|+.|++.++.+... ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555555555432 235556666666666666653 2 35667777777888777777666666777778888
Q ss_pred EEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055 357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL 436 (549)
Q Consensus 357 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i 436 (549)
|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 88888887766666677788888888888888755566667788888888888888766666677788888888888888
Q ss_pred cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC
Q 046055 437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491 (549)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 491 (549)
++..+..+..+++|+.|++++|.+.. .+++|+.++++.|.+.+.+|..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 87767777788888888888887762 3556888888888888777754
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.1e-22 Score=182.99 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=156.2
Q ss_pred CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCc-CccccCccccCCCCCCEEEccC-ceecccCCcccccCCCCCEEE
Q 046055 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNL-LSGEIPENLSISDSLNQLKVAY-NNIAGKIPPSIGNLTNLNVLS 382 (549)
Q Consensus 305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 382 (549)
+++.|++.+|++++..+..+..+++|++|++++|. +..+.+..+..+++|++|++++ |.+.+..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777775555567778888888888886 7767666778888888888887 888866667788888899999
Q ss_pred ccCCcCCCCCccccccCCCCC---EEEccCC-cccccCCcccccCCCCc-EEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055 383 LQNNRFNGELPEEMFNLKVIS---LINVSSN-NISGEIPTSISGCISLT-TVDFSRNSLSGEIPKAISQLRDLSILNLSR 457 (549)
Q Consensus 383 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 457 (549)
+++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|+++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 99888874 565 77788887 9999999 88766667788899999 9999999998544445555 8899999999
Q ss_pred Cc-ccccCCccccCC-CCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055 458 NQ-LTGPIPTDMQDM-MSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN 507 (549)
Q Consensus 458 n~-i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~ 507 (549)
|+ ++...+..+..+ ++|+.|++++|++.+. |.. .++.++.+.+.++..
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT-TCTTCSEEECTTC--
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh-HhccCceeeccCccC
Confidence 95 887777788888 8999999999999854 433 788999998887753
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-21 Score=179.31 Aligned_cols=181 Identities=20% Similarity=0.233 Sum_probs=139.7
Q ss_pred CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055 304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383 (549)
Q Consensus 304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 383 (549)
...+++++.++.+. .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34667888888776 5665443 57888888888888777777778888888888888888777777788888888888
Q ss_pred cCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055 384 QNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463 (549)
Q Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 463 (549)
++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|+++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888766666677788888888888888766666677788888888888888766666777788888888888888866
Q ss_pred CCccccCCCCCCeEeCCCCCCccc
Q 046055 464 IPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 464 ~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
.+..+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777788888888888887754
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.3e-23 Score=204.70 Aligned_cols=254 Identities=16% Similarity=0.189 Sum_probs=138.8
Q ss_pred ecccccCcccCCccCCCCCCccEEEccCccccccCC----ccccCCC-CccEEECcCCcccccCCccccCCCCccEEecc
Q 046055 214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP----ENLGRNR-KLLLLDVSSNQIEGKIPRDLCKGERLKSLILM 288 (549)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 288 (549)
.++.+.+.+.++..+...++|++|++++|.++...+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~--------- 74 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI--------- 74 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH---------
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH---------
Confidence 344455544444444444445555555555553333 3344444 45555555555544333333332
Q ss_pred ccccccCCCccccC-CCCCcEEEccCCcCcccCCcc----CCCC-CCCCEEEeecCcCccccCccc----cC-CCCCCEE
Q 046055 289 QNLFSGPIPEELGA-CESLTKFRAMKNQLNGTIPAG----IFNL-PLLKMIELDHNLLSGEIPENL----SI-SDSLNQL 357 (549)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~~~----~~-~~~L~~L 357 (549)
+.. +++|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+ .. +.+|++|
T Consensus 75 -----------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 75 -----------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp -----------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred -----------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 001 145555555555554333321 2233 566666666666655444332 22 3467777
Q ss_pred EccCceecccC----CcccccCC-CCCEEEccCCcCCCCCccccc----cC-CCCCEEEccCCccccc----CCccccc-
Q 046055 358 KVAYNNIAGKI----PPSIGNLT-NLNVLSLQNNRFNGELPEEMF----NL-KVISLINVSSNNISGE----IPTSISG- 422 (549)
Q Consensus 358 ~l~~n~~~~~~----~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~----~~~~~~~- 422 (549)
++++|.+++.. +..+..++ +|++|++++|.+++..+..+. .. ++|+.|++++|.+.+. ++..+..
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 77777766432 22333444 777777777777655554333 33 4777777777777642 2333444
Q ss_pred CCCCcEEECCCCcCcccch----hhhhCCCCCCEEECCCCccccc-------CCccccCCCCCCeEeCCCCCCccc
Q 046055 423 CISLTTVDFSRNSLSGEIP----KAISQLRDLSILNLSRNQLTGP-------IPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 423 ~~~L~~L~L~~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
.++|++|++++|.+++..+ ..+..+++|+.|++++|.+... ++..+..+++|+.||+++|++...
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3577888888887775433 3345667788888888874322 223556677788888888887654
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=9.6e-22 Score=181.01 Aligned_cols=157 Identities=21% Similarity=0.192 Sum_probs=77.2
Q ss_pred CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384 (549)
Q Consensus 305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 384 (549)
+++.|++.+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 45555555555544444444445555555555555554444444445555555555555544444444455555555555
Q ss_pred CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
+|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55554333333444555555555555554433334445555555555555555444444444555555555555544
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.6e-21 Score=180.31 Aligned_cols=228 Identities=23% Similarity=0.290 Sum_probs=173.8
Q ss_pred cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEc
Q 046055 15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL 94 (549)
Q Consensus 15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l 94 (549)
.+..+++..+.+.+... ...+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+ . ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccccc---cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 34445555665554322 2256788888888887763 2 347778888888888888764 2 36777888888888
Q ss_pred cCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccc
Q 046055 95 NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG 174 (549)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~ 174 (549)
++|.+....+..++.+++|++|++++ +.+....+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888877777778888888888887 66666666667888888888888888886666667888889999998888887
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccC
Q 046055 175 HIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254 (549)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 254 (549)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++. +.+++++.+++..|.+++.+|..++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 77777788889999999999888777777888899999999888765 34678888999999988888877765
Q ss_pred CCC
Q 046055 255 NRK 257 (549)
Q Consensus 255 ~~~ 257 (549)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.3e-23 Score=206.92 Aligned_cols=189 Identities=17% Similarity=0.217 Sum_probs=130.3
Q ss_pred cCCCCCcEEEccCCcCcc----cCCccCCCCCCCCEEEeecCcCccccCccccC----C---------CCCCEEEccCce
Q 046055 301 GACESLTKFRAMKNQLNG----TIPAGIFNLPLLKMIELDHNLLSGEIPENLSI----S---------DSLNQLKVAYNN 363 (549)
Q Consensus 301 ~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~----~---------~~L~~L~l~~n~ 363 (549)
..+++|++|++++|.+.+ .++..+..+++|++|++++|.+....+..+.. + ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456666666666666654 24445566777777777777775443333322 2 778888888888
Q ss_pred ec-ccCC---cccccCCCCCEEEccCCcCCC-----CCccccccCCCCCEEEccCCccc----ccCCcccccCCCCcEEE
Q 046055 364 IA-GKIP---PSIGNLTNLNVLSLQNNRFNG-----ELPEEMFNLKVISLINVSSNNIS----GEIPTSISGCISLTTVD 430 (549)
Q Consensus 364 ~~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~ 430 (549)
++ ...+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 76 2233 356677788888888887752 12336677888888888888875 34566777888888888
Q ss_pred CCCCcCccc----chhhhhC--CCCCCEEECCCCcccc----cCCccc-cCCCCCCeEeCCCCCCcccCC
Q 046055 431 FSRNSLSGE----IPKAISQ--LRDLSILNLSRNQLTG----PIPTDM-QDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 431 L~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~i~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~p 489 (549)
|++|.+++. ++..+.. +++|+.|++++|.++. .++..+ ..+++|++|++++|++.+..+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888765 4555533 7888888888888886 355555 557888888888888875543
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=8.8e-23 Score=197.17 Aligned_cols=250 Identities=14% Similarity=0.207 Sum_probs=134.5
Q ss_pred ccEEEccCccccccCCccccCC--CCccEEECcCCcccccCCccccCCCCccEEeccccccccC-CCccccCCCCCcEEE
Q 046055 234 LEVLQVWGNNFTGELPENLGRN--RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP-IPEELGACESLTKFR 310 (549)
Q Consensus 234 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 310 (549)
++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555555443 1223333 5566666666665544332 34455666666666554432 333455556666666
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEeecC-cCccc-cCccccCCCCCCEEEccCc-eeccc-CCcccccCC-CCCEEEccC
Q 046055 311 AMKNQLNGTIPAGIFNLPLLKMIELDHN-LLSGE-IPENLSISDSLNQLKVAYN-NIAGK-IPPSIGNLT-NLNVLSLQN 385 (549)
Q Consensus 311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~ 385 (549)
+.+|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666555445555555666666666666 44432 3333455566666666666 55532 344455666 666666666
Q ss_pred Cc--CC-CCCccccccCCCCCEEEccCCc-ccccCCcccccCCCCcEEECCCCc-CcccchhhhhCCCCCCEEECCCCcc
Q 046055 386 NR--FN-GELPEEMFNLKVISLINVSSNN-ISGEIPTSISGCISLTTVDFSRNS-LSGEIPKAISQLRDLSILNLSRNQL 460 (549)
Q Consensus 386 n~--l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i 460 (549)
|. ++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 63 32 2334455566666666666666 444455556666666666666663 33222234556666666666666 3
Q ss_pred cccCCccccCC-CCCCeEeCCCCCCcccCCCC
Q 046055 461 TGPIPTDMQDM-MSLTTLDLSYNNLNGEVPSG 491 (549)
Q Consensus 461 ~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~ 491 (549)
... .+..+ .+++.|++++|.+.+..|..
T Consensus 284 ~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 PDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 321 22222 22555556666666555543
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=186.95 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc----CCcccccCCCCCEEEccCCcCCCCCcc----ccc
Q 046055 326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK----IPPSIGNLTNLNVLSLQNNRFNGELPE----EMF 397 (549)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~ 397 (549)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 455556666666655555555555555555555555554321 1122345555666666666554 2222 123
Q ss_pred cCCCCCEEEccCCcccccCCcccccC---CCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCC
Q 046055 398 NLKVISLINVSSNNISGEIPTSISGC---ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL 474 (549)
Q Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 474 (549)
.+++|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 44555555555555554444444333 35555555555555 3333332 4555555555555522 21 3444555
Q ss_pred CeEeCCCCCCc
Q 046055 475 TTLDLSYNNLN 485 (549)
Q Consensus 475 ~~L~l~~n~~~ 485 (549)
+.|++++|++.
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 55555555543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9.4e-23 Score=196.96 Aligned_cols=234 Identities=18% Similarity=0.278 Sum_probs=154.1
Q ss_pred CCccccccCCCcccEEEccCCCCCCcCChhhhhCC--CCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceec-cC
Q 046055 4 DNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGM--TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE-IP 80 (549)
Q Consensus 4 ~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~ 80 (549)
..|..+......++.++++++.+.+ .. +..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+. .+
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~~---~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLHP---DV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCCH---HH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCCH---HH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 3466665555568999999987752 22 3355 7899999999988865444 66789999999999988754 67
Q ss_pred ccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCc-cCCcc-CCcccc
Q 046055 81 ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASC-NISGE-IPASLS 157 (549)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~-~i~~~-~~~~l~ 157 (549)
..+..+++|++|++++|.+....+..++.+++|++|+++++..+.+ .++..+..+++|++|++++| .+++. .+..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 7788889999999999988877777788888888888887434544 24555677788888888888 77643 345566
Q ss_pred CCC-CCCeEeccCcc--cc-ccCCccccCCCCCCEEeCCCCc-CccccCccccCCCcCceeeccccc-CcccCCccCCCC
Q 046055 158 QLK-LLDALFLQMNK--LT-GHIHPELSGLISLTQLDLSLNC-LTGEVPESFSALKNLSLVQLFKNN-LRGPFPSFVGDY 231 (549)
Q Consensus 158 ~l~-~L~~L~l~~~~--l~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~ 231 (549)
.++ +|++|++++|. +. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 666 77777777763 32 1122334456666666666666 444444455555666666665553 211111123345
Q ss_pred CCccEEEccCc
Q 046055 232 PNLEVLQVWGN 242 (549)
Q Consensus 232 ~~L~~L~l~~~ 242 (549)
++|++|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 55555555554
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.9e-23 Score=198.74 Aligned_cols=247 Identities=17% Similarity=0.174 Sum_probs=171.8
Q ss_pred CcCCcccccCCccccCCCCccEEeccccccccCCC----ccccCCC-CCcEEEccCCcCcccCCccCCC-----CCCCCE
Q 046055 263 VSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP----EELGACE-SLTKFRAMKNQLNGTIPAGIFN-----LPLLKM 332 (549)
Q Consensus 263 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~ 332 (549)
++.|.+.+.++..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.. +++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 33444443333333333334444444444443333 3445555 6677777777666554444443 289999
Q ss_pred EEeecCcCccccCcc----ccCC-CCCCEEEccCceecccCCccc----cc-CCCCCEEEccCCcCCCCCcc----cccc
Q 046055 333 IELDHNLLSGEIPEN----LSIS-DSLNQLKVAYNNIAGKIPPSI----GN-LTNLNVLSLQNNRFNGELPE----EMFN 398 (549)
Q Consensus 333 L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~n~l~~~~~~----~~~~ 398 (549)
|++++|.+.+..+.. +... ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+. .+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 999999998766653 3344 899999999999986655443 33 36999999999999855443 3445
Q ss_pred CC-CCCEEEccCCcccccCCccc----ccC-CCCcEEECCCCcCccc----chhhhhC-CCCCCEEECCCCcccccCC--
Q 046055 399 LK-VISLINVSSNNISGEIPTSI----SGC-ISLTTVDFSRNSLSGE----IPKAISQ-LRDLSILNLSRNQLTGPIP-- 465 (549)
Q Consensus 399 l~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~L~~n~i~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~~-- 465 (549)
.+ +|+.|++++|.+.+..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+++..+
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 55 99999999999986665443 445 5999999999999863 4555655 4699999999999986554
Q ss_pred --ccccCCCCCCeEeCCCCCCcccC--------CCCCCCCCCCccccCCCCCCC
Q 046055 466 --TDMQDMMSLTTLDLSYNNLNGEV--------PSGGHFPAFDEASFAGNPNLC 509 (549)
Q Consensus 466 --~~l~~l~~L~~L~l~~n~~~~~~--------p~~~~~~~l~~l~l~~n~~~~ 509 (549)
..+..+++|+.|++++|.+.... .....+++|+.+++++|+...
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 34577899999999999944222 234567889999999998654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.7e-21 Score=175.83 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=140.8
Q ss_pred CccEEeccccccccCCCccccCCCCCcEEEccCCc-CcccCCccCCCCCCCCEEEeec-CcCccccCccccCCCCCCEEE
Q 046055 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ-LNGTIPAGIFNLPLLKMIELDH-NLLSGEIPENLSISDSLNQLK 358 (549)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ 358 (549)
+++.|++++|.++...+..+..+++|++|++.+|+ +....+..+..+++|++|++++ |.+.+..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55556666555555555556666667777777665 5544444566777778888877 777766666777777888888
Q ss_pred ccCceecccCCcccccCCCCC---EEEccCC-cCCCCCccccccCCCCC-EEEccCCcccccCCcccccCCCCcEEECCC
Q 046055 359 VAYNNIAGKIPPSIGNLTNLN---VLSLQNN-RFNGELPEEMFNLKVIS-LINVSSNNISGEIPTSISGCISLTTVDFSR 433 (549)
Q Consensus 359 l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 433 (549)
+++|.+.+ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.+....+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88887774 444 67777777 8888888 77755556677888888 8888888887444445555 7888899988
Q ss_pred Cc-CcccchhhhhCC-CCCCEEECCCCcccccCCccccCCCCCCeEeCCCCC
Q 046055 434 NS-LSGEIPKAISQL-RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483 (549)
Q Consensus 434 n~-i~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 483 (549)
|+ +++..+..|..+ ++|+.|++++|+++...+. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 85 876666778888 8899999999988844333 56788888888764
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=184.92 Aligned_cols=201 Identities=22% Similarity=0.264 Sum_probs=164.7
Q ss_pred CCCCcEEEccCCcCcccCCccC--CCCCCCCEEEeecCcCccccC----ccccCCCCCCEEEccCceecccCCcccccCC
Q 046055 303 CESLTKFRAMKNQLNGTIPAGI--FNLPLLKMIELDHNLLSGEIP----ENLSISDSLNQLKVAYNNIAGKIPPSIGNLT 376 (549)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 376 (549)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777777777777766 778899999999999886544 2334688999999999999988888999999
Q ss_pred CCCEEEccCCcCCCC--C--ccccccCCCCCEEEccCCcccccCCc----ccccCCCCcEEECCCCcCcccchhhhhCC-
Q 046055 377 NLNVLSLQNNRFNGE--L--PEEMFNLKVISLINVSSNNISGEIPT----SISGCISLTTVDFSRNSLSGEIPKAISQL- 447 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~i~~~~~~~~~~~- 447 (549)
+|++|++++|++.+. . +..+..+++|++|++++|.++. .+. .+..+++|++|++++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999997532 2 2334688999999999999963 232 35688999999999999998777777666
Q ss_pred --CCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCC
Q 046055 448 --RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508 (549)
Q Consensus 448 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~ 508 (549)
++|++|++++|+++ .+|..+. ++|++|++++|++.+. |....+++|+.+++++|++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 79999999999999 5666664 7999999999999954 66788999999999999864
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.2e-21 Score=181.49 Aligned_cols=207 Identities=17% Similarity=0.251 Sum_probs=169.5
Q ss_pred ECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCc
Q 046055 262 DVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLS 341 (549)
Q Consensus 262 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 341 (549)
.+..+.+.+. .....+++|+.|+++++.+.... .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCce--ecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence 3444444432 23456789999999999888642 588899999999999999844 33 888999999999999988
Q ss_pred cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccc
Q 046055 342 GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS 421 (549)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (549)
+. ..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +.
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~ 170 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LA 170 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hc
Confidence 64 3578889999999999999853 3 388999999999999999744 33 7889999999999999985433 88
Q ss_pred cCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 422 GCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 422 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
.+++|+.|++++|.+++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++.+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 99999999999999986543 788999999999999998554 38889999999999999975
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6.4e-23 Score=201.87 Aligned_cols=245 Identities=18% Similarity=0.257 Sum_probs=178.3
Q ss_pred cCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCC---cCcccCCcc
Q 046055 247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN---QLNGTIPAG 323 (549)
Q Consensus 247 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~~~ 323 (549)
.++..+..+++|+.|++++|.+.+..+..+ ...+..+++|++|++++| ++.+.+|..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~ 82 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWL--------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEA 82 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHH--------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHH--------------------HHHHHhCCCccEEeCcccccCccccchhHH
Confidence 344445556666666666666554322211 112334445555555543 222233333
Q ss_pred -------CCCCCCCCEEEeecCcCcc----ccCccccCCCCCCEEEccCceecccCCc----ccccC---------CCCC
Q 046055 324 -------IFNLPLLKMIELDHNLLSG----EIPENLSISDSLNQLKVAYNNIAGKIPP----SIGNL---------TNLN 379 (549)
Q Consensus 324 -------~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~---------~~L~ 379 (549)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++...+. .+..+ ++|+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 3688999999999999987 3555678899999999999999744333 33344 8999
Q ss_pred EEEccCCcCCC-CCc---cccccCCCCCEEEccCCcccc-----cCCcccccCCCCcEEECCCCcCc----ccchhhhhC
Q 046055 380 VLSLQNNRFNG-ELP---EEMFNLKVISLINVSSNNISG-----EIPTSISGCISLTTVDFSRNSLS----GEIPKAISQ 446 (549)
Q Consensus 380 ~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~i~----~~~~~~~~~ 446 (549)
+|++++|.+.. ..+ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++ ..++..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 99999999873 344 456688999999999999873 23337889999999999999996 467788899
Q ss_pred CCCCCEEECCCCccccc----CCccccC--CCCCCeEeCCCCCCcc----cCCCC--CCCCCCCccccCCCCCCCCC
Q 046055 447 LRDLSILNLSRNQLTGP----IPTDMQD--MMSLTTLDLSYNNLNG----EVPSG--GHFPAFDEASFAGNPNLCLP 511 (549)
Q Consensus 447 ~~~L~~L~l~~n~i~~~----~~~~l~~--l~~L~~L~l~~n~~~~----~~p~~--~~~~~l~~l~l~~n~~~~~~ 511 (549)
+++|+.|++++|.++.. ++..+.. +++|++|++++|.+.. .+|.. ..+++|+.+++++|+.....
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999999999865 4555533 8999999999999997 35543 45799999999999876543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2e-20 Score=177.48 Aligned_cols=195 Identities=22% Similarity=0.301 Sum_probs=166.7
Q ss_pred ccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCC
Q 046055 252 LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLK 331 (549)
Q Consensus 252 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 331 (549)
...+++|+.|+++++.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 4467899999999999875 33 67889999999999999986544 8999999999999999874 3 3688899999
Q ss_pred EEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCc
Q 046055 332 MIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN 411 (549)
Q Consensus 332 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (549)
+|++++|.+.+.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 9999999998653 37889999999999999985443 8899999999999999984 444 8899999999999999
Q ss_pred ccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055 412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462 (549)
Q Consensus 412 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 462 (549)
+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.++.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 985443 889999999999999998654 38889999999999999984
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.6e-19 Score=162.18 Aligned_cols=137 Identities=23% Similarity=0.253 Sum_probs=72.9
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
++++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|.++...+..|..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44555555555443333344445555555555555554445555555555555555555554444445555555555555
Q ss_pred CCcccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCC
Q 046055 457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRN 513 (549)
Q Consensus 457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~ 513 (549)
+|+++...+..|..+++|+.|++++|.+.+..+. ...+++|+.+++++||+.|+|..
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 5555555555555555555555555555544443 24455566666666666665543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.4e-19 Score=171.64 Aligned_cols=240 Identities=19% Similarity=0.170 Sum_probs=136.8
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc-CCCccccCCCCCcE-EEcc
Q 046055 235 EVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG-PIPEELGACESLTK-FRAM 312 (549)
Q Consensus 235 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~ 312 (549)
+.++.++++++ .+|..+ .+++++|++++|++....+..|..+++|++|++++|.+.+ ....+|.+++++.+ +...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45667777776 455544 3567777777777775544556677777777777776644 33345666666554 3444
Q ss_pred CCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccC-ceecccCCcccccCC-CCCEEEccCCcCCC
Q 046055 313 KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAY-NNIAGKIPPSIGNLT-NLNVLSLQNNRFNG 390 (549)
Q Consensus 313 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~ 390 (549)
.|++....+..+..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 5666655555666667777777777766655544444445556666644 344444444444443 4566666666665
Q ss_pred CCccccccCCCCCEEEccC-CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055 391 ELPEEMFNLKVISLINVSS-NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ 469 (549)
Q Consensus 391 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 469 (549)
.++.......+|+.+++.+ |.+....+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 3444444445566666653 4444333345666666666666666666332222 3445555554443332444 355
Q ss_pred CCCCCCeEeCCCC
Q 046055 470 DMMSLTTLDLSYN 482 (549)
Q Consensus 470 ~l~~L~~L~l~~n 482 (549)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 6666666666543
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=176.24 Aligned_cols=181 Identities=22% Similarity=0.204 Sum_probs=111.2
Q ss_pred CEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc-cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG-NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS 409 (549)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (549)
+.++++++.+..+ |..+ ...++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3455555555532 2222 23456666666666655555555 666666666666666655555666666777777777
Q ss_pred CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc---cCCCCCCeEeCCCCCCcc
Q 046055 410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM---QDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~l~~n~~~~ 486 (549)
|++....+..|..+++|+.|+|++|.+....+..|..+++|+.|++++|+++...+..+ ..+++|+.|++++|++..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 76665555566667777777777777766666667777777777777777774444444 456777777777777764
Q ss_pred cCCC-CCCCCC--CCccccCCCCCCCCCCCC
Q 046055 487 EVPS-GGHFPA--FDEASFAGNPNLCLPRNV 514 (549)
Q Consensus 487 ~~p~-~~~~~~--l~~l~l~~n~~~~~~~~~ 514 (549)
..+. ...++. ++.+++.+||+.|+|+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCcH
Confidence 3321 123443 367788888888877643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=9.5e-19 Score=169.30 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=183.3
Q ss_pred ceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC-ccccCCCCccE-Eecc
Q 046055 211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKS-LILM 288 (549)
Q Consensus 211 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~l~ 288 (549)
++++.++++++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|++.+.++ ..+..++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677777777 455544 3689999999999996666678999999999999999865444 45667777765 5666
Q ss_pred ccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeec-CcCccccCccccCC-CCCCEEEccCceecc
Q 046055 289 QNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDH-NLLSGEIPENLSIS-DSLNQLKVAYNNIAG 366 (549)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~ 366 (549)
.|.+....+..+..+++|+.+++.+|++....+..+....++..+++.+ +.+....+..+... ..++.|++++|.+.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7888888888999999999999999999866666666777888999976 45665655566555 468899999999985
Q ss_pred cCCcccccCCCCCEEEccC-CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhh
Q 046055 367 KIPPSIGNLTNLNVLSLQN-NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS 445 (549)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 445 (549)
..+..| ...+|+++++.+ |.++...+..|..+++|+.|++++|+++...+.. +.+|+.|.+.++.-.+.+| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 555444 457899999985 5666333456889999999999999998544434 4567777776665444666 478
Q ss_pred CCCCCCEEECCCCc
Q 046055 446 QLRDLSILNLSRNQ 459 (549)
Q Consensus 446 ~~~~L~~L~l~~n~ 459 (549)
.+++|+.+++.++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 89999999998764
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.9e-19 Score=156.96 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=127.5
Q ss_pred cEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCC
Q 046055 307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN 386 (549)
Q Consensus 307 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 386 (549)
+.++..++.++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34455555544 334332 357788888888877666666777788888888888877655566777888888888888
Q ss_pred cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055 387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT 466 (549)
Q Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 466 (549)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 887555556777888888888888887666666778888888888888888666666777888888888888765
Q ss_pred cccCCCCCCeEeCCCCCCcccCCCC
Q 046055 467 DMQDMMSLTTLDLSYNNLNGEVPSG 491 (549)
Q Consensus 467 ~l~~l~~L~~L~l~~n~~~~~~p~~ 491 (549)
..+++|++|+++.|.+.+.+|..
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeecc
Confidence 23567888888888888777753
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=8.5e-19 Score=157.39 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=91.5
Q ss_pred CEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS 409 (549)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (549)
+.++++++.+..+ |..+ ...+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677777766643 3322 2445666666666665433 3456666666666666666644444566666666666666
Q ss_pred CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++...|..+..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66665555556666666666666666665555556666666666666666665555556666666666666666553
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.9e-18 Score=156.21 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=87.0
Q ss_pred CCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055 330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS 409 (549)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (549)
.+.++.+++.+..+ |..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45566666666533 2222 25666666666666655555566666666666666666533334455566666666666
Q ss_pred CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6665444444555666666666666665 445555555666666666666654444455555555555555555553
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.9e-18 Score=153.95 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=72.7
Q ss_pred CCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEEC
Q 046055 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431 (549)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 431 (549)
+.+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+....+..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555554444444555555555555555555444555555555555555555555443444555555555555
Q ss_pred CCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055 432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 432 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 485 (549)
++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555555555555556666666666655444445555556666666666554
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=4.2e-18 Score=152.87 Aligned_cols=152 Identities=21% Similarity=0.243 Sum_probs=86.9
Q ss_pred cEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccC
Q 046055 307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQN 385 (549)
Q Consensus 307 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 385 (549)
+.++++++.++ .+|..+ .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555555554 344333 2345566666666655433 3345556666666666666555555556666666666666
Q ss_pred CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 386 NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
|.+++..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6665444555555666666666666665555555666666666666666665555555666666666666666554
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=7.2e-18 Score=150.35 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=73.0
Q ss_pred cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055 17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG 96 (549)
Q Consensus 17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (549)
+.++.+++.+.. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 445555555543 33322 24566666666666544444455666666666666655544344455555555555555
Q ss_pred CCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccC
Q 046055 97 IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHI 176 (549)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 176 (549)
|.+....+..+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 86 n~l~~~~~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 86 NQLQSLPNGVF-------------------------DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp SCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCccCHhHh-------------------------cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 55543333333 33444444444444444333333444444444444444444333
Q ss_pred CccccCCCCCCEEeCCCCc
Q 046055 177 HPELSGLISLTQLDLSLNC 195 (549)
Q Consensus 177 ~~~l~~l~~L~~L~l~~~~ 195 (549)
+..+..+++|++|++++|.
T Consensus 141 ~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTTCTTCCEEECCSCC
T ss_pred HHHhccCCCccEEEecCCC
Confidence 3334444445555554443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.2e-18 Score=161.82 Aligned_cols=173 Identities=23% Similarity=0.349 Sum_probs=146.1
Q ss_pred ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379 (549)
Q Consensus 300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 379 (549)
...+++|+.+++.+|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 4567889999999998873 33 47788999999999999987654 7888999999999999885 33 488899999
Q ss_pred EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055 380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459 (549)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 459 (549)
+|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 99999999874 3 4678899999999999999854 678889999999999999986654 8889999999999999
Q ss_pred ccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 460 LTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 460 i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
+++. + .+..+++|+.|++++|++..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 9854 3 48889999999999999874
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=166.70 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=74.4
Q ss_pred CCEEEeecCcCccccCcccc-CCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEcc
Q 046055 330 LKMIELDHNLLSGEIPENLS-ISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVS 408 (549)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (549)
++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555444444443 44555555555555554444445555555555555555543333344455555555555
Q ss_pred CCcccccCCcccccCCCCcEEECCCCcCcccchhhh---hCCCCCCEEECCCCcccccCCccccCCCC--CCeEeCCCCC
Q 046055 409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI---SQLRDLSILNLSRNQLTGPIPTDMQDMMS--LTTLDLSYNN 483 (549)
Q Consensus 409 ~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~--L~~L~l~~n~ 483 (549)
+|.+....+..|..+++|+.|+|++|.+++..+..+ ..+++|+.|++++|+++...+..+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555544444455555555555555555553333333 33455555555555555333334444444 2455555554
Q ss_pred C
Q 046055 484 L 484 (549)
Q Consensus 484 ~ 484 (549)
+
T Consensus 201 ~ 201 (361)
T 2xot_A 201 L 201 (361)
T ss_dssp E
T ss_pred c
Confidence 4
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.6e-18 Score=159.09 Aligned_cols=190 Identities=20% Similarity=0.261 Sum_probs=155.1
Q ss_pred cEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecC
Q 046055 259 LLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN 338 (549)
Q Consensus 259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (549)
..+.+..+.+.+. .....+++|+.|++++|.+... ..+..+++|+.|++++|++.+..+ +..+++|++|++++|
T Consensus 27 ~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 3344555555432 2345678999999999988865 347889999999999999985443 888999999999999
Q ss_pred cCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCc
Q 046055 339 LLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT 418 (549)
Q Consensus 339 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (549)
.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+
T Consensus 101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 98864 3478899999999999999853 4678899999999999999844 578889999999999999986544
Q ss_pred ccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055 419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI 464 (549)
Q Consensus 419 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 464 (549)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|.++...
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 88999999999999999854 3 4888999999999999998543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.9e-17 Score=149.58 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=81.8
Q ss_pred CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434 (549)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 434 (549)
+.++.+++.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34555555554 3333222 45555555555555444555555555555555555555444444555555555555555
Q ss_pred cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCC
Q 046055 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPR 512 (549)
Q Consensus 435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~ 512 (549)
.++...+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++....+. ...+++|+.+++.+||+.|.|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555444444555555555555555555 4444555555555555555555543332 2345555555555555555553
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=2.5e-17 Score=167.41 Aligned_cols=134 Identities=27% Similarity=0.410 Sum_probs=64.1
Q ss_pred CccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEee
Q 046055 257 KLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD 336 (549)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 336 (549)
+++.|++++|.+.+ +|..+ +++|+.|++++|.++.+ + ..+++|+.|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66677777776664 44333 25566666666655532 2 234555555555555543 333 222 45555555
Q ss_pred cCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccc
Q 046055 337 HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS 413 (549)
Q Consensus 337 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (549)
+|.+.++ |. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.+.
T Consensus 129 ~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 129 NNQLTML-PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCcCCCC-CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 5555432 22 33445555555554442 222 23444445554444442 333 22 44444444444444
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=147.24 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=82.0
Q ss_pred CCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055 327 LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN 406 (549)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (549)
+++|+.|++++|.+... + .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44555555555555422 2 3444555555555555443 122445556666666666665544555555566666666
Q ss_pred ccCCcccccCCcccccCCCCcEEECCCCc-CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055 407 VSSNNISGEIPTSISGCISLTTVDFSRNS-LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 485 (549)
+++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++. + .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66666655455555566666666666665 44 233 455566666666666666532 2 4555666666666666654
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=3.3e-17 Score=166.61 Aligned_cols=184 Identities=29% Similarity=0.391 Sum_probs=91.7
Q ss_pred CccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEcc
Q 046055 233 NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAM 312 (549)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (549)
+++.|++++|.+++ +|..+ .++|+.|++++|.+. .+| ..+++|+.|++++|.++.. +. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 55666666665553 44333 245666666666555 233 2345566666666655542 22 332 56666666
Q ss_pred CCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCC
Q 046055 313 KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL 392 (549)
Q Consensus 313 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 392 (549)
+|.+.+ +|. .+++|+.|++++|.+.++ |. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666553 443 355566666666665542 22 34556666666666553 333 33 55666666666655 44
Q ss_pred ccccccCCCC-------CEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhh
Q 046055 393 PEEMFNLKVI-------SLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444 (549)
Q Consensus 393 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 444 (549)
|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+++..|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 43 322 33 44444444444 233333334444444444444444444433
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=146.63 Aligned_cols=152 Identities=18% Similarity=0.305 Sum_probs=134.0
Q ss_pred cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055 349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT 428 (549)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 428 (549)
..++.|++|++++|.+. .++ .+..+++|++|++++|.+. . +..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678999999999998 555 6889999999999999775 3 347888999999999999999778888999999999
Q ss_pred EECCCCcCcccchhhhhCCCCCCEEECCCCc-ccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055 429 VDFSRNSLSGEIPKAISQLRDLSILNLSRNQ-LTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN 507 (549)
Q Consensus 429 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~ 507 (549)
|++++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|++|++++|++.. ++....+++|+.+++++|+.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCccc
Confidence 9999999998888999999999999999998 774 44 68999999999999999995 55778899999999999984
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=8.8e-16 Score=151.03 Aligned_cols=332 Identities=9% Similarity=0.005 Sum_probs=174.3
Q ss_pred CCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCcccc
Q 046055 54 PLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133 (549)
Q Consensus 54 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 133 (549)
+...+|.+|.+|+.+++..+ +...-..+|.++.+|+.+++.++ +......+|.++.+|+.+.+.. .+......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecceeee
Confidence 34456667777777777543 44345556777777777777543 4444455566666666655542 22222333444
Q ss_pred CCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCcee
Q 046055 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLV 213 (549)
Q Consensus 134 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 213 (549)
.+..++...... +.......|..+++|+.+.+.++ +..+...+|.++.+|+.+++..+ +.......|.++..|+.+
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 443222221111 11123344555555555555433 22244445555555555555433 222333444444455444
Q ss_pred ecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccc
Q 046055 214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFS 293 (549)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 293 (549)
.+..+.. . ..........|+.+.+.... .......+..+..++.+.+..+...
T Consensus 214 ~~~~~~~------------------------~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 214 EFPNSLY------------------------Y--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR 266 (394)
T ss_dssp CCCTTCC------------------------E--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE
T ss_pred ecCCCce------------------------E--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce
Confidence 4433221 1 11112223344444443221 1122233444455555555443222
Q ss_pred cCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc
Q 046055 294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG 373 (549)
Q Consensus 294 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 373 (549)
.....+..+..++.+......+ ....+..+.+|+.+.+..+ +..+...+|..+.+|+.+++..+ +......+|.
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 340 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR 340 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred -eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence 3334555666666665544332 1234556777777777654 45566667777778888877644 5545566778
Q ss_pred cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEE
Q 046055 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429 (549)
Q Consensus 374 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 429 (549)
+|++|+.+++..+ ++.....+|.++++|+.+++..+ +. ....+|.+|++|+.+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8888888888765 44345567778888888888654 22 234567777777765
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.7e-17 Score=168.19 Aligned_cols=150 Identities=25% Similarity=0.342 Sum_probs=67.8
Q ss_pred ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379 (549)
Q Consensus 300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 379 (549)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence 3334444444444444432221 33444445555554444422 1344444455555555444421 2244445555
Q ss_pred EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055 380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459 (549)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 459 (549)
.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence 555555554422 334445555555555555543322 44455555555555555432 234445555555555555
Q ss_pred cc
Q 046055 460 LT 461 (549)
Q Consensus 460 i~ 461 (549)
+.
T Consensus 209 l~ 210 (605)
T 1m9s_A 209 CL 210 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.7e-17 Score=168.22 Aligned_cols=174 Identities=24% Similarity=0.355 Sum_probs=152.0
Q ss_pred ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379 (549)
Q Consensus 300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 379 (549)
...++.|+.|++.+|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 466788999999999987 344 57889999999999999987655 8889999999999999984 33 688999999
Q ss_pred EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055 380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459 (549)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 459 (549)
.|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 99999999974 3 4588999999999999999854 678999999999999999997666 8899999999999999
Q ss_pred ccccCCccccCCCCCCeEeCCCCCCccc
Q 046055 460 LTGPIPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 460 i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
++.. ..+..+++|+.|++++|++...
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 9964 4688999999999999999854
No 116
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=8.4e-16 Score=151.18 Aligned_cols=312 Identities=12% Similarity=0.063 Sum_probs=157.7
Q ss_pred ccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCc
Q 046055 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKN 209 (549)
Q Consensus 130 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 209 (549)
.+|.+|++|+.+.+..+ ++.....+|.++++|+.+++.++ +..+...+|.++.+|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45556666666666432 44344455556666666655433 44444555555555555544432 22233333433322
Q ss_pred CceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccc
Q 046055 210 LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQ 289 (549)
Q Consensus 210 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 289 (549)
.+...... ....... +|..+.+|+.+.+.++.. ......+..+.+|+.+.+..
T Consensus 142 ~~~~~~~~--~~~i~~~------------------------aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 142 KEITIPEG--VTVIGDE------------------------AFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp SEEECCTT--CCEECTT------------------------TTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCT
T ss_pred cccccCcc--ccccchh------------------------hhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCC
Confidence 22111111 1112223 344444444444433221 12233344444555555443
Q ss_pred cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC
Q 046055 290 NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369 (549)
Q Consensus 290 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 369 (549)
+ +......++.++..|+.+.+..+.. .+........+|+.+.+.... ..+....+..+..++.+.+..+... ...
T Consensus 195 ~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 195 N-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp T-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred C-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eec
Confidence 3 2223334455555555554443322 122233344566666665432 2244445556666666666554333 444
Q ss_pred cccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCC
Q 046055 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRD 449 (549)
Q Consensus 370 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~ 449 (549)
..|..+..++.+......+. ...|..+.+|+.+.+..+ +......+|.+|.+|+.+++..+ ++.+...+|.++++
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 55666666666666554322 234556666777666544 44344556777777777777543 55455566777777
Q ss_pred CCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055 450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 450 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 482 (549)
|+.+++..+ ++.+...+|.+|++|+.+++..+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 777777655 55566667777777777766543
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=3.7e-17 Score=156.72 Aligned_cols=264 Identities=14% Similarity=0.027 Sum_probs=149.6
Q ss_pred CCcccEEEccCCCCCCc-CChhhhhCCCCCcEEEccCCCCcCCCCccccC--------CCCcCEEEccCCcceeccCccc
Q 046055 13 KMSLKVLNISGNGFQDY-FPGQIVVGMTELEVLDAFNNNFTGPLPVEIVS--------LKNLKHLSFGGNYFSGEIPESY 83 (549)
Q Consensus 13 ~~~L~~L~Ls~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~--------l~~L~~L~ls~~~~~~~~~~~~ 83 (549)
+++|++|||++|++... .... .++.++.+.+..+.+. ..+|.+ |++|+.|++.+ .+....+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 78899999999998610 1111 1222455555555443 355677 88888888888 6665666778
Q ss_pred cCCCCCCEEEccCCCCccccchhccCCCCCceeecCCcc---ccCccCCccccCCCCCC-EEEccCccC-CccCCccccC
Q 046055 84 SEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFN---TYTGGIPPEFGTLSKLR-VLDMASCNI-SGEIPASLSQ 158 (549)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~-~L~l~~~~i-~~~~~~~l~~ 158 (549)
.++++|+.+++.++.+....+.+|.++.++..+...... .........|..+..|+ .+.+..... ..........
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 888888888888888777777778877777776665411 11112233455566666 344432210 0000001111
Q ss_pred CCCCCeEeccCccccccCCccc-cCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCcc-E
Q 046055 159 LKLLDALFLQMNKLTGHIHPEL-SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLE-V 236 (549)
Q Consensus 159 l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~ 236 (549)
..++..+.+.+.-.. .....+ ..+++|+.+++++|.+.......|.++.+|+.+.+.++ +....+..|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 233444443322110 000011 12456666666666666555556666666666666655 5545555566666666 6
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055 237 LQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI 286 (549)
Q Consensus 237 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 286 (549)
+++.+ .++...+.+|.++++|+.+++.++.+....+..|..+++|+.++
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666 45545556666666666666666666655555666666666664
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.1e-17 Score=150.69 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=138.8
Q ss_pred CCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEE
Q 046055 302 ACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVL 381 (549)
Q Consensus 302 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 381 (549)
.+.++..+++.++.+.+.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3445667778888776333 456788999999999998854 3 67788999999999999985444 8899999999
Q ss_pred EccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 382 SLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
++++|.+++ ++... . ++|+.|++++|.+.+. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999974 44332 2 8999999999999853 3588899999999999999865 3 6888999999999999998
Q ss_pred ccCCccccCCCCCCeEeCCCCCCccc
Q 046055 462 GPIPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 462 ~~~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
+. ..+..+++|+.|++++|++...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 66 6788899999999999998854
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=8e-17 Score=154.39 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=62.4
Q ss_pred CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCc-EEECCCCcCcccchhhhhCCCCCCEE
Q 046055 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT-TVDFSRNSLSGEIPKAISQLRDLSIL 453 (549)
Q Consensus 375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L 453 (549)
+++|+.+++.+|.++...+.+|.++++|+.+++.+| +......+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455666666655555344445555666666666555 4444555666666666 666666 5555555666666666666
Q ss_pred ECCCCcccccCCccccCCCCCCeEe
Q 046055 454 NLSRNQLTGPIPTDMQDMMSLTTLD 478 (549)
Q Consensus 454 ~l~~n~i~~~~~~~l~~l~~L~~L~ 478 (549)
++.+|.++.+.+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666656666666666666665
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.5e-17 Score=151.09 Aligned_cols=170 Identities=16% Similarity=0.265 Sum_probs=139.6
Q ss_pred CCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEE
Q 046055 279 GERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLK 358 (549)
Q Consensus 279 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 358 (549)
+..+..+++.++.+.+.. .+..+++|+.|++.+|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455667778888776543 5778899999999999887 455 67788999999999999987655 88899999999
Q ss_pred ccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcc
Q 046055 359 VAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG 438 (549)
Q Consensus 359 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~ 438 (549)
+++|++.+ ++.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 99999985 3332 23 899999999999974 33 588899999999999999854 368889999999999999986
Q ss_pred cchhhhhCCCCCCEEECCCCccccc
Q 046055 439 EIPKAISQLRDLSILNLSRNQLTGP 463 (549)
Q Consensus 439 ~~~~~~~~~~~L~~L~l~~n~i~~~ 463 (549)
. ..+..+++|+.|++++|.+...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6688899999999999999855
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3.3e-16 Score=137.30 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=102.8
Q ss_pred CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcc-ccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPE-EMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433 (549)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 433 (549)
++++++++.+. .+|..+. .++++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57777777776 4554433 2777888888877644443 367777788888888877766677777777788888888
Q ss_pred CcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCC
Q 046055 434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC 509 (549)
Q Consensus 434 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~ 509 (549)
|.+++..+..|..+++|+.|++++|+++...+..+..+++|++|++++|++.+..+..+....++...+.++...|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C 163 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC 163 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCC
Confidence 8777666666777777777777777777777777777777777777777777544422212223333444444444
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=137.41 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=72.8
Q ss_pred CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055 379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN 458 (549)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 458 (549)
+.++++++.++ .+|..+. ++++.|++++|.+. .+|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 3343322 35555555555554 34455555555566666666555555555555566666666666
Q ss_pred cccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCC
Q 046055 459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNV 514 (549)
Q Consensus 459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~ 514 (549)
+++...+..|..+++|+.|++++|.+....+. ...+++|+.+++++||+.|+|+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 66555555555666666666666666644432 244566666666666666666543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.4e-16 Score=139.66 Aligned_cols=174 Identities=19% Similarity=0.225 Sum_probs=127.8
Q ss_pred CEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc-ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP-SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS 409 (549)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (549)
+.++++++.+.. .|..+. ..+++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 788999998874 444333 4899999999999866554 488999999999999999877788899999999999999
Q ss_pred CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc-cccCCCCCCeEeCCCCCCcccC
Q 046055 410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT-DMQDMMSLTTLDLSYNNLNGEV 488 (549)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~ 488 (549)
|++.+..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+....+. .+. ..++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCC
Confidence 999988888889999999999999999988888899999999999999998743221 111 11222233333333222
Q ss_pred CCCCCCCCCCccccCCCCCCCCC
Q 046055 489 PSGGHFPAFDEASFAGNPNLCLP 511 (549)
Q Consensus 489 p~~~~~~~l~~l~l~~n~~~~~~ 511 (549)
|. .+...+..++..+...|..
T Consensus 166 P~--~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 166 PS--KVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp ST--TTTTSBGGGSCTTTCCCCC
T ss_pred Ch--HHcCCChhhCcHhhcCcCC
Confidence 32 2344455566666666654
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.9e-14 Score=140.60 Aligned_cols=266 Identities=9% Similarity=0.020 Sum_probs=175.5
Q ss_pred CCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeE
Q 046055 86 IQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDAL 165 (549)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 165 (549)
+..++.+.+.+ .+......+|.++ +|+.+.+.. .+......+|.++ +|+.+.+.. .++......|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 35566666654 3444555556554 566666653 2444444455553 577777765 4554555667777777777
Q ss_pred eccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCcccc
Q 046055 166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245 (549)
Q Consensus 166 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 245 (549)
++..+.+..+...+|. ..+|+.+.+..+ +.......|.++++|+.+.+..+ +.......|.+ .+|+.+.+.+ .++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 7777777666666666 367777777643 55456666777777777777653 44455555555 6777777743 344
Q ss_pred ccCCccccCCCCccEEECcCCccc-----ccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccC
Q 046055 246 GELPENLGRNRKLLLLDVSSNQIE-----GKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320 (549)
Q Consensus 246 ~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 320 (549)
.....+|..+++|+.+++.++.+. ......|..+++|+.+.+.+ .+..+...+|.+|++|+.+.+..+ +....
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 455667777777888777766543 34556677788888888874 466666778888888888888554 55445
Q ss_pred CccCCCCCCCCEEEeecCcCccccCccccCC-CCCCEEEccCceec
Q 046055 321 PAGIFNLPLLKMIELDHNLLSGEIPENLSIS-DSLNQLKVAYNNIA 365 (549)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~ 365 (549)
..+|..+ +|+.+++.+|.........|..+ ..++.+++..+.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5677788 89999999888877666677666 47888888877654
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.3e-14 Score=141.76 Aligned_cols=265 Identities=11% Similarity=0.100 Sum_probs=165.3
Q ss_pred CCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeec
Q 046055 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL 215 (549)
Q Consensus 136 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 215 (549)
..++.+.+.+. ++......|.++ +|+.+.+..+ +..+...+|.+. +|+.+.+.. .+.......|.++++|+.+.+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44444444432 232334444443 4555555443 444555555553 466666553 344444555566666666666
Q ss_pred ccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccC
Q 046055 216 FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP 295 (549)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 295 (549)
.++.+.......+. +.+|+.+.+..+ +......+|..+++|+.+++..+ +.......|.. .+|+.+.+. +.+..+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 65555544444444 456666666543 44445556666666666666653 33233334444 567777774 334445
Q ss_pred CCccccCCCCCcEEEccCCcCc-----ccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc
Q 046055 296 IPEELGACESLTKFRAMKNQLN-----GTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP 370 (549)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (549)
...+|.+|++|+.+.+.++.+. ......|..|++|+.+++.+ .+..+....|..+.+|+.+.+..+ +......
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 5667777888888877766543 23455677888999999884 577677788888899999999665 5556677
Q ss_pred ccccCCCCCEEEccCCcCCCCCccccccCC-CCCEEEccCCccc
Q 046055 371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLK-VISLINVSSNNIS 413 (549)
Q Consensus 371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 413 (549)
+|.++ +|+.+++.+|.........|..++ +++.|++..+.+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 88888 999999999987755566777774 7888988877653
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.5e-16 Score=133.46 Aligned_cols=134 Identities=22% Similarity=0.199 Sum_probs=94.4
Q ss_pred CCCCCEEEccCceec-ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEE
Q 046055 351 SDSLNQLKVAYNNIA-GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429 (549)
Q Consensus 351 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 429 (549)
++.+++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777765 45566667777777777777777643 566677777777777777775566666667778888
Q ss_pred ECCCCcCcccc-hhhhhCCCCCCEEECCCCcccccCC---ccccCCCCCCeEeCCCCCCcc
Q 046055 430 DFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIP---TDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 430 ~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~n~~~~ 486 (549)
++++|.+++.. +..+..+++|+.|++++|.++...+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888777532 2567777788888888888775444 367777888888888887763
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=7.6e-16 Score=129.13 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCCCEEEccCceec-ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEE
Q 046055 352 DSLNQLKVAYNNIA-GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVD 430 (549)
Q Consensus 352 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 430 (549)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 44555556666666666666666533 4555666666666666666644555555566666666
Q ss_pred CCCCcCccc-chhhhhCCCCCCEEECCCCcccccCC---ccccCCCCCCeEeCC
Q 046055 431 FSRNSLSGE-IPKAISQLRDLSILNLSRNQLTGPIP---TDMQDMMSLTTLDLS 480 (549)
Q Consensus 431 L~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~ 480 (549)
+++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666642 23556666666666666666664443 356666666666664
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=130.58 Aligned_cols=128 Identities=27% Similarity=0.378 Sum_probs=89.8
Q ss_pred CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434 (549)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 434 (549)
++++++++.+. .+|..+ .++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35566666665 334332 246777777777776 56667777777777777777777666667777777777777777
Q ss_pred cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666677777777777777777775555567777778888888777753
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.6e-18 Score=177.31 Aligned_cols=107 Identities=22% Similarity=0.318 Sum_probs=53.6
Q ss_pred CCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055 378 LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457 (549)
Q Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 457 (549)
|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 444555555544 2333 444555555555555554 344445555555555555555543 33 445555555555555
Q ss_pred CcccccC-CccccCCCCCCeEeCCCCCCcccCC
Q 046055 458 NQLTGPI-PTDMQDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 458 n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p 489 (549)
|++++.. |..+..+++|+.|++++|++.+.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5555443 4555555555555555555554444
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.4e-15 Score=130.34 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=96.6
Q ss_pred CCCCCEEEeecCcCc-cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEE
Q 046055 327 LPLLKMIELDHNLLS-GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI 405 (549)
Q Consensus 327 ~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (549)
.++|++|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356667777776665 44455556667777777777776644 566777888888888888875566666678888888
Q ss_pred EccCCcccccC-CcccccCCCCcEEECCCCcCcccch---hhhhCCCCCCEEECCCCccc
Q 046055 406 NVSSNNISGEI-PTSISGCISLTTVDFSRNSLSGEIP---KAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 406 ~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~n~i~ 461 (549)
++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888877432 2567788888888888888875544 46788888888888888887
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.9e-18 Score=175.37 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=142.9
Q ss_pred cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCc-------------CcccCCccCCCCCCCCEEE-eecCcCcc
Q 046055 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ-------------LNGTIPAGIFNLPLLKMIE-LDHNLLSG 342 (549)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~~~~~~~~~L~~L~-l~~~~l~~ 342 (549)
...+.|+.|++++|.+. ..|..++.+++|+.|++.+|. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 55678888888888887 456778888888888876653 3334455556666777777 44443221
Q ss_pred ccCc-----ccc--CCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccccc
Q 046055 343 EIPE-----NLS--ISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE 415 (549)
Q Consensus 343 ~~~~-----~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (549)
.... .+. ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 1000 000 11358889999998885 555 888889999999999888 778888888999999999998885
Q ss_pred CCcccccCCCCcEEECCCCcCcccc-hhhhhCCCCCCEEECCCCcccccCCcc---ccCCCCCCeEeC
Q 046055 416 IPTSISGCISLTTVDFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIPTD---MQDMMSLTTLDL 479 (549)
Q Consensus 416 ~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~---l~~l~~L~~L~l 479 (549)
+| .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|.+++..+.. +..+|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 45 7888889999999999988765 888888899999999999888554422 234788888764
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6.1e-15 Score=127.52 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=71.1
Q ss_pred CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434 (549)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 434 (549)
+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45556666555 233222 245666666666665444444555566666666666655444444555566666666666
Q ss_pred cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccC
Q 046055 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEV 488 (549)
Q Consensus 435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 488 (549)
.+++..+..+..+++|+.|++++|+++...+..+..+++|++|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 665444444555556666666666655444444455555566666555555433
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.2e-15 Score=126.25 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCCCEEEeecCcCc-cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055 328 PLLKMIELDHNLLS-GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN 406 (549)
Q Consensus 328 ~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (549)
++++.|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55667777777666 45555566677777777777777644 5677788888888888888765777777788888888
Q ss_pred ccCCccccc-CCcccccCCCCcEEECCCCcCcccch---hhhhCCCCCCEEECCC
Q 046055 407 VSSNNISGE-IPTSISGCISLTTVDFSRNSLSGEIP---KAISQLRDLSILNLSR 457 (549)
Q Consensus 407 l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~ 457 (549)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888753 23677888888888888888876554 4678888888888764
No 134
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.59 E-value=3.2e-13 Score=132.74 Aligned_cols=306 Identities=10% Similarity=0.086 Sum_probs=119.8
Q ss_pred CCeEeccCccccccCCccccCCCCCCEEeCCCCc---CccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEE
Q 046055 162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC---LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ 238 (549)
Q Consensus 162 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 238 (549)
|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ +.......+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444332 333444444444444444444321 23233344444455554444332 2223333444555555555
Q ss_pred ccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc
Q 046055 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG 318 (549)
Q Consensus 239 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 318 (549)
+..+. .......+..+..|+.+.+..+ +.......+ ....|+.+.+..+.. .....++..+..++..........
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~- 218 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP- 218 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC-
T ss_pred cccee-eeecccceecccccccccccce-eeEeccccc-cccceeEEEECCccc-ccccchhhhccccceecccccccc-
Confidence 54332 2133344455555555555433 211222222 234455555544322 133344555555555544433222
Q ss_pred cCCcc--------------CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055 319 TIPAG--------------IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384 (549)
Q Consensus 319 ~~~~~--------------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 384 (549)
..... +.....+..+.+.. .+..+....|..+..|+.+.+..+... ....+|.++++|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC
Confidence 11110 01112222232221 122233334444445555544433222 333344445555555543
Q ss_pred CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI 464 (549)
Q Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 464 (549)
. .++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++... .
T Consensus 297 ~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~- 371 (394)
T 4gt6_A 297 S-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W- 371 (394)
T ss_dssp T-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-
T ss_pred C-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-
Confidence 2 222122334444445555544432 22233344445555555554322 33333444444555555555444332 1
Q ss_pred CccccCCCCCCeEeCCCC
Q 046055 465 PTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 465 ~~~l~~l~~L~~L~l~~n 482 (549)
..+..+.+|+.+.+..+
T Consensus 372 -~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 372 -NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -HTCBCCCCC--------
T ss_pred -hhhhccCCCCEEEeCCC
Confidence 23333444444444433
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=125.98 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=77.3
Q ss_pred CCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055 378 LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457 (549)
Q Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 457 (549)
.+.++++++.++ .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666655 344332 24666666666666544444556666666666666666655445556666666666666
Q ss_pred CcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCC
Q 046055 458 NQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPR 512 (549)
Q Consensus 458 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~ 512 (549)
|.++...+..+..+++|++|++++|.+.+.++.. ..+++|+.+++++|++.|.|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666555555566666666666666666444433 445666666666666666554
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=9.5e-13 Score=129.33 Aligned_cols=133 Identities=12% Similarity=0.186 Sum_probs=69.7
Q ss_pred ccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCC
Q 046055 322 AGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV 401 (549)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (549)
.+|..+..|+.+.+..+.. .+....|..+..|+.+.+.. .+......+|.+|.+|+.+++..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3444555566665554332 24445555666666666642 333344556666667777766543 33234456666777
Q ss_pred CCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
|+.+.+..+ +......+|.+|.+|+.+++.++... ...+..+..|+.+.+..+.+.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 777777543 44445566777777777777766432 134566667777776666543
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.6e-15 Score=160.21 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=52.1
Q ss_pred cccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCC
Q 046055 299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL 378 (549)
Q Consensus 299 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 378 (549)
.+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. ..|..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3444444444444444444 33333334444444444444444 33344444444444444444444 334444444444
Q ss_pred CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCc
Q 046055 379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT 418 (549)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (549)
++|++++|.+. .+|..|..+++|+.|+|++|++.+..|.
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 44444444443 3444444444444444444444443333
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.2e-14 Score=125.40 Aligned_cols=134 Identities=18% Similarity=0.178 Sum_probs=100.7
Q ss_pred ccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCc
Q 046055 348 LSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427 (549)
Q Consensus 348 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 427 (549)
+..+..+++|++++|.+.. ++......++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4567788888888888884 444333334888888888888743 5677888888888888888855545567888888
Q ss_pred EEECCCCcCcccchh--hhhCCCCCCEEECCCCcccccCCc----cccCCCCCCeEeCCCCCCcc
Q 046055 428 TVDFSRNSLSGEIPK--AISQLRDLSILNLSRNQLTGPIPT----DMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 428 ~L~L~~n~i~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~n~~~~ 486 (549)
+|++++|.++ .++. .+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|....
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888888886 4444 6778888888888888887 3444 37778888888888887654
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2.3e-14 Score=123.62 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=91.7
Q ss_pred CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055 324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403 (549)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (549)
+..+++|++|++++|.+... +......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 44567778888888877744 33333334788888888877754 4667777888888888877744334456777888
Q ss_pred EEEccCCcccccCCc--ccccCCCCcEEECCCCcCcccchh----hhhCCCCCCEEECCCCccc
Q 046055 404 LINVSSNNISGEIPT--SISGCISLTTVDFSRNSLSGEIPK----AISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 404 ~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~ 461 (549)
.|++++|.+. ..+. .+..+++|+.|++++|.+.. .|. .+..+++|+.|++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888775 3443 66777788888888887763 343 3677778888888777765
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=5.3e-15 Score=156.19 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=78.7
Q ss_pred CccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCC
Q 046055 80 PESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQL 159 (549)
Q Consensus 80 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 159 (549)
+..+..+..|+.|++++|.+. .++..+..+++|++|++++ +.+. .+|..|+.+++|++|++++|.++ .+|..+..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~-N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNG-NSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTT-SCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeC-CcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 444555555555555555554 3333444555566666655 4444 45555666666666666666666 456666666
Q ss_pred CCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCC-cCceeecccccCcccCCccCCCCCCccEEE
Q 046055 160 KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALK-NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ 238 (549)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 238 (549)
++|+.|++++|.+. ..+..|..+++|++|+|++|.+.+..|..+..+. ....+++.+|.+...+|. .++.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence 66666666666665 3344466677777777777776655555443321 112355666666544443 344455
Q ss_pred ccCc
Q 046055 239 VWGN 242 (549)
Q Consensus 239 l~~~ 242 (549)
++.|
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 5544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.4e-15 Score=134.17 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=81.6
Q ss_pred cccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCC
Q 046055 347 NLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISL 426 (549)
Q Consensus 347 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 426 (549)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ .+ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 45556666777776666664 44 5666677777777777666 555555556667777777776664 22 46666677
Q ss_pred cEEECCCCcCcccch-hhhhCCCCCCEEECCCCcccccCCc----------cccCCCCCCeEeCCCCCCc
Q 046055 427 TTVDFSRNSLSGEIP-KAISQLRDLSILNLSRNQLTGPIPT----------DMQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 427 ~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~l~~l~~L~~L~l~~n~~~ 485 (549)
++|++++|.+++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|| +|++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777664322 3566667777777777766544332 255666666665 44443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.5e-13 Score=115.24 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=83.1
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
..+.+++++|.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3577888888887 5665543 678888888888877777778888888888888888876666667778888888888
Q ss_pred CCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055 457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489 (549)
Q Consensus 457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 489 (549)
+|+++...+..+..+++|++|++++|++....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888876666667777888888888887765443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=1.1e-13 Score=118.72 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=71.6
Q ss_pred CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055 379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN 458 (549)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 458 (549)
+.+++++|.+. .+|..+. ++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5565443 67777777777777666666777777777777777777555555666777777777777
Q ss_pred cccccCCccccCCCCCCeEeCCCCCCccc
Q 046055 459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487 (549)
Q Consensus 459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 487 (549)
+++...+..+..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 77755544566677777777777766633
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5e-16 Score=137.02 Aligned_cols=152 Identities=20% Similarity=0.284 Sum_probs=123.6
Q ss_pred CCCCCCEEEccCceecccCCc------ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccC
Q 046055 350 ISDSLNQLKVAYNNIAGKIPP------SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC 423 (549)
Q Consensus 350 ~~~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (549)
....++.++++++.+.+..+. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555566666666555554 78899999999999999984 66 8889999999999999998 667777788
Q ss_pred CCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCC-ccccCCCCCCeEeCCCCCCcccCCC-----------C
Q 046055 424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP-TDMQDMMSLTTLDLSYNNLNGEVPS-----------G 491 (549)
Q Consensus 424 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~-----------~ 491 (549)
++|++|++++|.+++ +| .+..+++|+.|++++|+++...+ ..+..+++|++|++++|++.+.+|. .
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 999999999999985 45 68888999999999999985433 4688899999999999999887776 3
Q ss_pred CCCCCCCccccCCCCCC
Q 046055 492 GHFPAFDEASFAGNPNL 508 (549)
Q Consensus 492 ~~~~~l~~l~l~~n~~~ 508 (549)
..++.|+.++ +|+..
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 5678888775 55543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=6.3e-13 Score=113.63 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=61.9
Q ss_pred CCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055 354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433 (549)
Q Consensus 354 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 433 (549)
.+++++++|.+. .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666665 234333 25566666666666655555566666666666666666655555556666666666666
Q ss_pred CcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 434 NSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 434 n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
|.+++..+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666544455666666666666666655
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.4e-12 Score=111.91 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=58.3
Q ss_pred CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434 (549)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 434 (549)
+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..|..+++|+.|++++|++.+..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45556665554 3343332 55666666666665444555555666666666666665444444555666666666666
Q ss_pred cCcccchhhhhCCCCCCEEECCCCccc
Q 046055 435 SLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
.+++..+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 665444444555566666666666555
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.40 E-value=1.1e-10 Score=114.13 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=72.9
Q ss_pred CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEE
Q 046055 326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI 405 (549)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (549)
.+.+++.+.+..+ +..+....+..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3444444444332 22233334444455555555443 33233444555555555555433 221333445556666666
Q ss_pred EccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCC
Q 046055 406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM 472 (549)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 472 (549)
.+.++.+......+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 66655555445556666666666666543 44445556666667776666544 4445555665553
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.39 E-value=1e-10 Score=114.33 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=109.4
Q ss_pred CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055 324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403 (549)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (549)
+..+..+..+.+..... ......+..+..++.+.+..+ +......++..+..|+.+.+..+ ++......|..+.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 33445566666554332 244455667778888887654 33355667778888888888765 4434556777888888
Q ss_pred EEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055 404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482 (549)
Q Consensus 404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 482 (549)
.+.+..+ +......+|.+|++|+.+.+.++.++.+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8888654 44455667888889999988888887677788888888999988755 66577778888888888887654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.1e-13 Score=133.84 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=38.4
Q ss_pred CCCCEEEccCCccccc----CCcccccCCCCcEEECCCCcCcccc----hhhhhCCCCCCEEECCCCcccccC----Ccc
Q 046055 400 KVISLINVSSNNISGE----IPTSISGCISLTTVDFSRNSLSGEI----PKAISQLRDLSILNLSRNQLTGPI----PTD 467 (549)
Q Consensus 400 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~----~~~ 467 (549)
++|+.|++++|.+++. ++..+..+++|++|+|++|.+++.. ...+...++|+.|++++|.|++.. +..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555544321 1122234455555555555554321 233344445555555555554321 122
Q ss_pred ccCCCCCCeEeCCCCCCc
Q 046055 468 MQDMMSLTTLDLSYNNLN 485 (549)
Q Consensus 468 l~~l~~L~~L~l~~n~~~ 485 (549)
+...++|++|++++|++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 333455555555555543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.2e-13 Score=133.75 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=91.8
Q ss_pred CCCCEEEeecCcCccccCccc-cCCCCCCEEEccCceecccCCccc-----ccCCCCCEEEccCCcCCCC----Cccccc
Q 046055 328 PLLKMIELDHNLLSGEIPENL-SISDSLNQLKVAYNNIAGKIPPSI-----GNLTNLNVLSLQNNRFNGE----LPEEMF 397 (549)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~ 397 (549)
++|++|++++|.+.......+ ..+.+|++|++++|.++......+ ...++|++|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666666543322222 223456677777776653322222 2356777777777776532 233345
Q ss_pred cCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc----chhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055 398 NLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSILNLSRNQLTGPIPTDMQ 469 (549)
Q Consensus 398 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 469 (549)
..++|++|++++|.+.+.. +..+..+++|++|+|++|.+++. +...+...++|++|++++|.|++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 6777888888888776432 34556677888888888888753 334455668888888888888755444443
Q ss_pred CC---C--CCCeEe--CCCCCCc
Q 046055 470 DM---M--SLTTLD--LSYNNLN 485 (549)
Q Consensus 470 ~l---~--~L~~L~--l~~n~~~ 485 (549)
.+ . .|+.+. +..|.+.
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 32 1 155665 5555554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.9e-11 Score=116.72 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=87.3
Q ss_pred CEEEccCC-cCCCCCccccccCCCCCEEEccC-CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055 379 NVLSLQNN-RFNGELPEEMFNLKVISLINVSS-NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456 (549)
Q Consensus 379 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 456 (549)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 787 6777 88888999999986 88887777788899999999999999988888888899999999999
Q ss_pred CCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055 457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486 (549)
Q Consensus 457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 486 (549)
+|+++...+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999866666666665 8999999998874
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.7e-10 Score=111.31 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=91.7
Q ss_pred CEEEccCc-eecccCCcccccCCCCCEEEccC-CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECC
Q 046055 355 NQLKVAYN-NIAGKIPPSIGNLTNLNVLSLQN-NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFS 432 (549)
Q Consensus 355 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 432 (549)
..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|++.+..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 5777 99999999999996 99987777889999999999999999998888899999999999999
Q ss_pred CCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055 433 RNSLSGEIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 433 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
+|.+++..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999976666676665 999999999997
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.1e-09 Score=104.93 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=80.0
Q ss_pred cCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc--cCCCCCEEEccC--CcCCCC-----Cc
Q 046055 323 GIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQN--NRFNGE-----LP 393 (549)
Q Consensus 323 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~l~~~-----~~ 393 (549)
.+..+|+|++|++++|.-... +. + ..++|++|++..|.+.......+. .+++|++|+|+. +...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344567777777776631111 11 2 256677777766665433222222 566777776642 111101 11
Q ss_pred ccc--ccCCCCCEEEccCCcccccCCccc---ccCCCCcEEECCCCcCcccc----hhhhhCCCCCCEEECCCCcccccC
Q 046055 394 EEM--FNLKVISLINVSSNNISGEIPTSI---SGCISLTTVDFSRNSLSGEI----PKAISQLRDLSILNLSRNQLTGPI 464 (549)
Q Consensus 394 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~ 464 (549)
..+ ..+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++.. +..+..+++|+.|++++|.|++..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 135677777777776653222222 23567777777777766532 222344567777777777666443
Q ss_pred CccccC-CCCCCeEeCCCCC
Q 046055 465 PTDMQD-MMSLTTLDLSYNN 483 (549)
Q Consensus 465 ~~~l~~-l~~L~~L~l~~n~ 483 (549)
...+.. + ...+++++++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 1 2456666655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=2e-09 Score=103.10 Aligned_cols=176 Identities=13% Similarity=0.154 Sum_probs=113.0
Q ss_pred CCCCCCEEEeecCcCc---------cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccc
Q 046055 326 NLPLLKMIELDHNLLS---------GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEM 396 (549)
Q Consensus 326 ~~~~L~~L~l~~~~l~---------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 396 (549)
.+++|+.|.+...... +.....+..++.|+.|.+++|.-. .++. + .+++|++|++..|.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3556666666543221 012233466789999999988322 2333 3 37899999999988764333334
Q ss_pred c--cCCCCCEEEccCC--ccccc-----CCccc--ccCCCCcEEECCCCcCcccchhhhh---CCCCCCEEECCCCcccc
Q 046055 397 F--NLKVISLINVSSN--NISGE-----IPTSI--SGCISLTTVDFSRNSLSGEIPKAIS---QLRDLSILNLSRNQLTG 462 (549)
Q Consensus 397 ~--~l~~L~~L~l~~n--~l~~~-----~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~~---~~~~L~~L~l~~n~i~~ 462 (549)
. .+|+|+.|+|+.+ ...+. +...+ ..+++|+.|++.+|.+++..+..+. .+++|+.|+++.|.+.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3 6899999998632 21111 11122 2479999999999999864443332 57899999999999986
Q ss_pred cC----CccccCCCCCCeEeCCCCCCcccCCCCCCCCC-C-CccccCCCC
Q 046055 463 PI----PTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPA-F-DEASFAGNP 506 (549)
Q Consensus 463 ~~----~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~-l-~~l~l~~n~ 506 (549)
.. +..+..+++|+.|++++|.+....-. .+.. + .++++++++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~--~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKK--ELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH--HHHHHCCSEEECCSBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHHHH--HHHHHcCCEEEecCCc
Confidence 43 34446679999999999987632110 1111 1 446777766
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=1e-08 Score=88.57 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc----chhhhhCCCCCCEEEC--CCCccccc----C
Q 046055 399 LKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSILNL--SRNQLTGP----I 464 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~l--~~n~i~~~----~ 464 (549)
.++|++|++++|.+.+.. ...+...++|++|+|++|.|++. +...+...++|++|++ ++|.|... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 344555555555443221 12233344555555555555532 2333444455555555 55555432 1
Q ss_pred CccccCCCCCCeEeCCCCCC
Q 046055 465 PTDMQDMMSLTTLDLSYNNL 484 (549)
Q Consensus 465 ~~~l~~l~~L~~L~l~~n~~ 484 (549)
...+...++|++|++++|.+
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCcCEEeccCCCC
Confidence 22334445566666655554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2e-08 Score=86.72 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCCCCCEEEccCc-eeccc----CCcccccCCCCCEEEccCCcCCCCC----ccccccCCCCCEEEccCCccccc----C
Q 046055 350 ISDSLNQLKVAYN-NIAGK----IPPSIGNLTNLNVLSLQNNRFNGEL----PEEMFNLKVISLINVSSNNISGE----I 416 (549)
Q Consensus 350 ~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~ 416 (549)
..+.|++|++++| .+... +...+...++|++|++++|.+.+.. ...+...++|++|++++|.+.+. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3444555555554 44321 2233444566667777776664322 23344456777777777776543 2
Q ss_pred CcccccCCCCcEEEC--CCCcCccc----chhhhhCCCCCCEEECCCCccc
Q 046055 417 PTSISGCISLTTVDF--SRNSLSGE----IPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 417 ~~~~~~~~~L~~L~L--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
...+...++|++|+| ++|.+++. +...+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 345666778888888 77888754 3345566688888888888875
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=4.5e-08 Score=82.01 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=39.4
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCCEEEccCCc-ccccCCcccccC----CCCcEEECCCCc-CcccchhhhhCCCCC
Q 046055 377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN-ISGEIPTSISGC----ISLTTVDFSRNS-LSGEIPKAISQLRDL 450 (549)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-i~~~~~~~~~~~~~L 450 (549)
.|+.||+++|.++......+..+++|+.|++++|. +++.....+..+ ++|++|+|++|. |++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544444444455555555555553 333322233332 245555555553 444333444445555
Q ss_pred CEEECCCC
Q 046055 451 SILNLSRN 458 (549)
Q Consensus 451 ~~L~l~~n 458 (549)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555555
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=1.6e-07 Score=78.68 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=45.4
Q ss_pred CCCCEEEccCceecccCCcccccCCCCCEEEccCCc-CCCCCccccccC----CCCCEEEccCCc-ccccCCcccccCCC
Q 046055 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR-FNGELPEEMFNL----KVISLINVSSNN-ISGEIPTSISGCIS 425 (549)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 425 (549)
..|+.|++++|.++...-..+..+++|++|++++|. +++..-..+..+ ++|+.|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554444445566666666666663 443322333332 346666666663 55444444555666
Q ss_pred CcEEECCCCc
Q 046055 426 LTTVDFSRNS 435 (549)
Q Consensus 426 L~~L~L~~n~ 435 (549)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=3.7e-07 Score=82.68 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=34.8
Q ss_pred CCCCCEEEccCCcccc--cCCcccccCCCCcEEECCCCcCccc-chhhhhCCCCCCEEECCCCcccccCC-------ccc
Q 046055 399 LKVISLINVSSNNISG--EIPTSISGCISLTTVDFSRNSLSGE-IPKAISQLRDLSILNLSRNQLTGPIP-------TDM 468 (549)
Q Consensus 399 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~-------~~l 468 (549)
+++|+.|++++|++.+ .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|.+....+ ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 3444444444444433 1223334455555555555555432 01112222 55555555555553332 124
Q ss_pred cCCCCCCeEe
Q 046055 469 QDMMSLTTLD 478 (549)
Q Consensus 469 ~~l~~L~~L~ 478 (549)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4556666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=2e-06 Score=77.89 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=63.7
Q ss_pred ccCCCCcEEECCCCcCcc--cchhhhhCCCCCCEEECCCCcccccCCccccCCC--CCCeEeCCCCCCcccCCC------
Q 046055 421 SGCISLTTVDFSRNSLSG--EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM--SLTTLDLSYNNLNGEVPS------ 490 (549)
Q Consensus 421 ~~~~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~------ 490 (549)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|+|+.. ..+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 468899999999999987 3456778999999999999999855 2344444 899999999999987764
Q ss_pred --CCCCCCCCccc
Q 046055 491 --GGHFPAFDEAS 501 (549)
Q Consensus 491 --~~~~~~l~~l~ 501 (549)
...+|+|+.++
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 24678888776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.73 E-value=1.9e-05 Score=67.39 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=56.1
Q ss_pred cCCCCCEEEccCC-cCCCC----CccccccCCCCCEEEccCCcccccCC----cccccCCCCcEEECCCCcCccc----c
Q 046055 374 NLTNLNVLSLQNN-RFNGE----LPEEMFNLKVISLINVSSNNISGEIP----TSISGCISLTTVDFSRNSLSGE----I 440 (549)
Q Consensus 374 ~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~i~~~----~ 440 (549)
.-+.|++|++++| .+... +.+.+..-..|+.|+|++|.+.+... ..+...+.|++|+|++|.|++. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555555553 43311 12233344556666666665543322 2333456666666666666643 2
Q ss_pred hhhhhCCCCCCEEECCCCc---ccc----cCCccccCCCCCCeEeCCCCCC
Q 046055 441 PKAISQLRDLSILNLSRNQ---LTG----PIPTDMQDMMSLTTLDLSYNNL 484 (549)
Q Consensus 441 ~~~~~~~~~L~~L~l~~n~---i~~----~~~~~l~~l~~L~~L~l~~n~~ 484 (549)
.+++..-++|++|++++|. +.. .+.+.+...+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344455667777776542 222 1223445556677777665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=6.1e-05 Score=64.27 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=63.3
Q ss_pred CCCCCEEEccCc-eecc----cCCcccccCCCCCEEEccCCcCCCC----CccccccCCCCCEEEccCCcccccC----C
Q 046055 351 SDSLNQLKVAYN-NIAG----KIPPSIGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSNNISGEI----P 417 (549)
Q Consensus 351 ~~~L~~L~l~~n-~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~ 417 (549)
.+.|++|+++++ .+.. .+...+..-+.|++|+|++|.+.+. +.+.+..-+.|+.|+|++|.|.+.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555553 4432 1233444556666666666666432 2233345566777777777765332 2
Q ss_pred cccccCCCCcEEECCCC---cCcc----cchhhhhCCCCCCEEECCCCccc
Q 046055 418 TSISGCISLTTVDFSRN---SLSG----EIPKAISQLRDLSILNLSRNQLT 461 (549)
Q Consensus 418 ~~~~~~~~L~~L~L~~n---~i~~----~~~~~~~~~~~L~~L~l~~n~i~ 461 (549)
.++..-+.|++|+|++| .++. .+.+.+..-++|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34455667888888765 3443 23455666778888888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00022 Score=56.85 Aligned_cols=45 Identities=33% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCC
Q 046055 473 SLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCL 517 (549)
Q Consensus 473 ~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~ 517 (549)
+|+.|+|++|.+....+.. ..+++|+.+++.+|||.|+|......
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHH
Confidence 3555555555555333322 34455666677777777777654433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0021 Score=51.09 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=18.0
Q ss_pred CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcc
Q 046055 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460 (549)
Q Consensus 425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 460 (549)
+|++|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555544444444555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.82 E-value=3.5 Score=30.39 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=22.6
Q ss_pred CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCC
Q 046055 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSY 481 (549)
Q Consensus 436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 481 (549)
++.+...+|.++++|+.+.|-.+- +.+...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 333334455555555555555442 224445555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.84 E-value=12 Score=27.52 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=14.5
Q ss_pred hhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEc
Q 046055 34 IVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSF 70 (549)
Q Consensus 34 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 70 (549)
.|.+|+.|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 3334444444444433 22222334444444444444
Done!