BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046057
(1198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 233/485 (48%), Gaps = 58/485 (11%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M ++H++ EM P+ K GGL DV+ +L + ++LP + ++ +R
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRR 60
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNN------DKERFAFFCHAALE 823
+ G I + FG G+ +Y ++ + + G Y N + RFA E
Sbjct: 61 DTFAG-HITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAE 119
Query: 824 FL--LQGGFHPDIIHCHDWSSA-----------PVAWLFKDHYVHY-GLSKARIV----- 864
L + PD++H HDW + P +F H + Y G+ A +
Sbjct: 120 MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQL 179
Query: 865 ----FTIHNLEFGTH--HIGKAMTYADKATTVSHTYSKEVAGDPAIAPHLH--------- 909
F IH LEF + + YAD T VS TY++E+ +P A +
Sbjct: 180 PWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREIT-EPQFAYGMEGLLQQRHRE 238
Query: 910 -KFYGILNGIDQDMWDPFNDKFIPVSYTSENLVEGKRAAKEALQQKVGLRKSD-LPLVGI 967
+ G+LNG+D+ +W P D + YT + L E K K LQ +GL+ D +PL +
Sbjct: 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKVDDKVPLFAV 297
Query: 968 ITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLC 1027
++RLT QKG+ L+ A+ L++GGQ+ LLG A DP +Q F+ A E + + +
Sbjct: 298 VSRLTSQKGLDLVLEALPGLLEQGGQLALLG-AGDPVLQEGFLAAAAE----YPGQVGVQ 352
Query: 1028 LTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDK 1087
+ Y E SH I GAD ILVPS FEPCGLTQL ++YG++P+VR+TGGL DTV D
Sbjct: 353 IGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTV----SDS 408
Query: 1088 ERAQALDLEPNGFSFDGADIAGVDYALNSIHVSSFHTTSRLYIYEDLEGQPLMIPFKQKQ 1147
D +GF F+ ++ + A+ +F SR ++ ++ Q + + F +
Sbjct: 409 SLENLADGVASGFVFEDSNAWSLLRAIR----RAFVLWSRPSLWRFVQRQAMAMDFSWQV 464
Query: 1148 SSMTY 1152
++ +Y
Sbjct: 465 AAKSY 469
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp
And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp
And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp
And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp
And Dgm
Length = 485
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 233/485 (48%), Gaps = 58/485 (11%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M ++H+ EM P+ K GGL DV+ +L + ++LP + ++ +R
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRR 60
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNN------DKERFAFFCHAALE 823
+ G I + FG G+ +Y ++ + + G Y N + RFA E
Sbjct: 61 DTFAG-HITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAE 119
Query: 824 FL--LQGGFHPDIIHCHDWSSA-----------PVAWLFKDHYVHY-GLSKARIV----- 864
L + PD++H HDW + P +F H + Y G+ A +
Sbjct: 120 MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQL 179
Query: 865 ----FTIHNLEFGTH--HIGKAMTYADKATTVSHTYSKEVAGDPAIAPHLH--------- 909
F IH LEF + + YAD T VS TY++E+ +P A +
Sbjct: 180 PWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREIT-EPQFAYGMEGLLQQRHRE 238
Query: 910 -KFYGILNGIDQDMWDPFNDKFIPVSYTSENLVEGKRAAKEALQQKVGLRKSD-LPLVGI 967
+ G+LNG+D+ +W P D + YT + L E K K LQ +GL+ D +PL +
Sbjct: 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKVDDKVPLFAV 297
Query: 968 ITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLC 1027
++RLT QKG+ L+ A+ L++GGQ+ LLG A DP +Q F+ A E + + +
Sbjct: 298 VSRLTSQKGLDLVLEALPGLLEQGGQLALLG-AGDPVLQEGFLAAAAE----YPGQVGVQ 352
Query: 1028 LTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDK 1087
+ Y E SH I GAD ILVPS FEPCGLTQL ++YG++P+VR+TGGL DTV D +
Sbjct: 353 IGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLEN 412
Query: 1088 ERAQALDLEPNGFSFDGADIAGVDYALNSIHVSSFHTTSRLYIYEDLEGQPLMIPFKQKQ 1147
D +GF F+ ++ + A+ +F SR ++ ++ Q + + F +
Sbjct: 413 ----LADGVASGFVFEDSNAWSLLRAIR----RAFVLWSRPSLWRFVQRQAMAMDFSWQV 464
Query: 1148 SSMTY 1152
++ +Y
Sbjct: 465 AAKSY 469
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With
Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With
Adp And Oligosaccharides
Length = 485
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 232/485 (47%), Gaps = 58/485 (11%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M ++H+ EM P+ K GGL DV+ +L + ++LP + ++ +R
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRR 60
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNN------DKERFAFFCHAALE 823
+ G I + FG G+ +Y ++ + + G Y N + RFA E
Sbjct: 61 DTFAG-HITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAE 119
Query: 824 FL--LQGGFHPDIIHCHDWSSA-----------PVAWLFKDHYVHY-GLSKARIV----- 864
L + PD++H HDW + P +F H + Y G+ A +
Sbjct: 120 MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQL 179
Query: 865 ----FTIHNLEFGTH--HIGKAMTYADKATTVSHTYSKEVAGDPAIAPHLH--------- 909
F IH LEF + + YAD T VS TY++E+ +P A +
Sbjct: 180 PWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREIT-EPQFAYGMEGLLQQRHRE 238
Query: 910 -KFYGILNGIDQDMWDPFNDKFIPVSYTSENLVEGKRAAKEALQQKVGLRKSD-LPLVGI 967
+ G+LNG+D+ +W P D + YT + L E K K LQ +GL+ D +PL +
Sbjct: 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKVDDKVPLFAV 297
Query: 968 ITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLC 1027
++RLT QKG+ L+ A+ L++GGQ+ LLG A DP +Q F+ A E + + +
Sbjct: 298 VSRLTSQKGLDLVLEALPGLLEQGGQLALLG-AGDPVLQEGFLAAAAE----YPGQVGVQ 352
Query: 1028 LTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDK 1087
+ Y E SH I GAD ILVPS F PCGLTQL ++YG++P+VR+TGGL DTV D +
Sbjct: 353 IGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLEN 412
Query: 1088 ERAQALDLEPNGFSFDGADIAGVDYALNSIHVSSFHTTSRLYIYEDLEGQPLMIPFKQKQ 1147
D +GF F+ ++ + A+ +F SR ++ ++ Q + + F +
Sbjct: 413 ----LADGVASGFVFEDSNAWSLLRAIR----RAFVLWSRPSLWRFVQRQAMAMDFSWQV 464
Query: 1148 SSMTY 1152
++ +Y
Sbjct: 465 AAKSY 469
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 146/530 (27%), Positives = 229/530 (43%), Gaps = 104/530 (19%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M+++ ++ E+ P+ K GGL DVV +L ++ ++P Y +K + +
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDKE------RFAFFCHAALE 823
G + + + E L + L+ + G Y K+ RFA AA
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAAR 120
Query: 824 FL--LQGGFHPDIIHCHDWSSA--PVAWLFKDHYVHYGLS-KARIVFTIHNL----EFGT 874
+ G+ PD++H HDW +A PV Y+ Y + + + TIHN+ +FG
Sbjct: 121 IGAGVLPGWRPDMVHAHDWQAAMTPV-------YMRYAETPEIPSLLTIHNIAFQGQFGA 173
Query: 875 HHIGK------------------------AMTYADKATTVSHTYSKEVAG-------DPA 903
+ K + A +TVS +Y++E+ +
Sbjct: 174 NIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGV 233
Query: 904 IAPHLHKFYGILNGIDQDMWDPFNDKFIPVSYTSENLVEGKRAAKEALQQKVGLRKSDLP 963
I H +GI+NGID D+W+P D I +Y++ NL + + K+A+ + + P
Sbjct: 234 IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDDDGSP 292
Query: 964 LVGIITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADR 1023
L +I+RLT QKGI L+ A+ + GG++V+LG+ S H R
Sbjct: 293 LFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAG-----DVALEGALLAAASRHHGR 347
Query: 1024 ARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDV 1083
+ + Y+EPLSHL+ AG D I++PS FEPCGLTQL A+RYG IPVV +TGGL DTV D
Sbjct: 348 VGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA 407
Query: 1084 DHDKERAQALDLEPNGFSFDGADIAGVDYALNSIHVSSFHTTSRLYIYEDLEGQPLMIPF 1143
+H ++A G F + G+ A+
Sbjct: 408 NHAALASKA----ATGVQFSPVTLDGLKQAIR---------------------------- 435
Query: 1144 KQKQSSMTYDSFRAISAYYDGREWLNSLCKTVMEQDWSWNRPALDYMELY 1193
R + Y+D + W + K M+ D SW + A Y LY
Sbjct: 436 ------------RTVRYYHDPKLW-TQMQKLGMKSDVSWEKSAGLYAALY 472
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 205/450 (45%), Gaps = 63/450 (14%)
Query: 711 HIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRSY 770
+++ ++ E+ P+ K GGL DVV +L ++ ++P Y +K + +
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFT 61
Query: 771 HWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDKE------RFAFFCHAALEF 824
G + + + E L + L+ + G Y K+ RFA AA
Sbjct: 62 DLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARI 121
Query: 825 L--LQGGFHPDIIHCHDWSSA--PVAWLFKDHYVHYGLS-KARIVFTIHNL----EFGTH 875
+ G+ PD +H HDW +A PV Y Y + + + TIHN+ +FG +
Sbjct: 122 GAGVLPGWRPDXVHAHDWQAAXTPV-------YXRYAETPEIPSLLTIHNIAFQGQFGAN 174
Query: 876 HIGK------------------------AMTYADKATTVSHTYSKEV-------AGDPAI 904
K + A +TVS +Y++E+ + I
Sbjct: 175 IFSKLALPAHAFGXEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGXGLEGVI 234
Query: 905 APHLHKFYGILNGIDQDMWDPFNDKFIPVSYTSENLVEGKRAAKEALQQKVGLRKSDLPL 964
H +GI+NGID D+W+P D I +Y++ NL + + K+A+ + + PL
Sbjct: 235 GSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDDDGSPL 293
Query: 965 VGIITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRA 1024
+I+RLT QKGI L A+ + GG++V+LG+ S H R
Sbjct: 294 FCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAG-----DVALEGALLAAASRHHGRV 348
Query: 1025 RLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVD 1084
+ + Y+EPLSHL AG D I++PS FEPCGLTQL A+RYG IPVV +TGGL DTV D +
Sbjct: 349 GVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDAN 408
Query: 1085 HDKERAQALDLEPNGFSFDGADIAGVDYAL 1114
H ++A G F + G+ A+
Sbjct: 409 HAALASKA----ATGVQFSPVTLDGLKQAI 434
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 203/445 (45%), Gaps = 84/445 (18%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLK----FSDVKDLG 765
M++V + EMAP +K GGLGDV+ L + H V +I P+YD K S V ++
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 766 YNRSYHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSK------GCVYGCN------NDKER 813
Y ++ + G+ F++ F K +YG + +++ R
Sbjct: 70 VADRYE----RVRFFHCYKRGVDRVFID-HPSFLEKVWGKTGEKIYGPDTGVDYKDNQMR 124
Query: 814 FAFFCHAALEF----------LLQGGFHPDIIH-CHDWSSAPVAWLFKDHYVHYGLSK-A 861
F+ C AALE +G + D++ C+DW + P+A K++Y G+ + A
Sbjct: 125 FSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNA 184
Query: 862 RIVFTIHNLEF----------------------------GTHHIGKAMTY-------ADK 886
++ F IHN+ + T G+ + + AD+
Sbjct: 185 KVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADR 244
Query: 887 ATTVSHTYSKEVAGDPAIAPHLHKFY------GILNGIDQDMWDPFNDKFIPVSYTSENL 940
TVS Y++E+ A L GI+NG+D WDP DK+I Y +
Sbjct: 245 VLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTA 304
Query: 941 VEGKRAAKEALQQKVGL---RKSDLPLVGIITRLTHQKGIHLIKHAIWRTLDRGGQVVLL 997
+E K KEALQ + GL RK +PL+ I RL QKG ++ AI + Q+VLL
Sbjct: 305 IEAKALNKEALQAEAGLPVDRK--IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLL 362
Query: 998 GSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLT 1057
G+ + F L + + + R + ++ PL+HLI AGAD + VPS FEPCGL
Sbjct: 363 GTG-----KKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLI 417
Query: 1058 QLVAMRYGSIPVVRKTGGLYDTVFD 1082
QL MRYG+ TGGL DTV +
Sbjct: 418 QLQGMRYGTPCACASTGGLVDTVIE 442
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 162/406 (39%), Gaps = 74/406 (18%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M ++ + E P+ KVGGL + +T++S + L H V + P + +F +++G R
Sbjct: 3 MKVLLLGFEFLPV-KVGGLAEALTAISEALASLGHEVLVFTPSHG--RFQG-EEIGKIRV 58
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDK--ERFAFFCHAA---LEF 824
+ G E++V E ++ G VYG D + F A+ L
Sbjct: 59 F---GEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLND 115
Query: 825 LLQGGFHPDIIHCHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNLE------FGTHHIG 878
LL+ PD++H HDW + L K ++ K VFTIH L F H G
Sbjct: 116 LLREEPLPDVVHFHDWHTVFAGALIKKYF------KIPAVFTIHRLNKSKLPAFYFHEAG 169
Query: 879 KAMT--------------YADKATTVSHTYSKEVAGDPAIAPHLHKFYG----ILNGIDQ 920
+ AD TTVS Y + G F G + NGID
Sbjct: 170 LSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWG------FFRNFEGKITYVFNGIDC 223
Query: 921 DMWDPFNDKFIPVSYTSENLVEGKR-AAKEALQQKVGLRKS-DLPLVGIITRLTHQKGIH 978
W+ E+ + G R K++L K G+ + +G R QKG+
Sbjct: 224 SFWN-------------ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDR--GQKGVD 268
Query: 979 LIKHAIWRTLDRGG----QVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPL 1034
++ AI + + +++G DP ++ A L H + +
Sbjct: 269 VLLKAIEILSSKKEFQEMRFIIIGKG-DPELEG----WARSLEEKHGNVKVITEMLSREF 323
Query: 1035 SHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTV 1080
+Y DF+++PS FEP GL L AM G+IP+ GGL D +
Sbjct: 324 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 162/406 (39%), Gaps = 74/406 (18%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M ++ + E P+ KVGGL + +T++S + L H V + P + +F +++G R
Sbjct: 3 MKVLLLGFEFLPV-KVGGLAEALTAISEALASLGHEVLVFTPSHG--RFQG-EEIGKIRV 58
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDK--ERFAFFCHAA---LEF 824
+ G E++V E ++ G VYG D + F A+ L
Sbjct: 59 F---GEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLND 115
Query: 825 LLQGGFHPDIIHCHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNLE------FGTHHIG 878
LL+ PD++H HDW + L K ++ K VFTIH L F H G
Sbjct: 116 LLREEPLPDVVHFHDWHTVFAGALIKKYF------KIPAVFTIHRLNKSKLPAFYFHEAG 169
Query: 879 KAMT--------------YADKATTVSHTYSKEVAGDPAIAPHLHKFYG----ILNGIDQ 920
+ AD TTVS Y + G F G + NGID
Sbjct: 170 LSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWG------FFRNFEGKITYVFNGIDC 223
Query: 921 DMWDPFNDKFIPVSYTSENLVEGKR-AAKEALQQKVGLRKS-DLPLVGIITRLTHQKGIH 978
W+ E+ + G R K++L K G+ + +G R QKG+
Sbjct: 224 SFWN-------------ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDR--GQKGVD 268
Query: 979 LIKHAIWRTLDRGG----QVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPL 1034
++ AI + + +++G DP ++ A L H + +
Sbjct: 269 VLLKAIEILSSKKEFQEMRFIIIGKG-DPELEG----WARSLEEKHGNVKVITEMLSREF 323
Query: 1035 SHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTV 1080
+Y DF+++PS FEP GL L AM G+IP+ GGL D +
Sbjct: 324 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 162/406 (39%), Gaps = 74/406 (18%)
Query: 710 MHIVHIAVEMAPIAKVGGLGDVVTSLSRTVQDLNHNVDIILPKYDCLKFSDVKDLGYNRS 769
M ++ + E P+ KVGGL + +T++S + L H V + P + +F +++G R
Sbjct: 4 MKVLLLGFEFLPV-KVGGLAEALTAISEALASLGHEVLVFTPSHG--RFQG-EEIGKIRV 59
Query: 770 YHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDK--ERFAFFCHAA---LEF 824
+ G E++V E ++ G VYG D + F A+ L
Sbjct: 60 F---GEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLND 116
Query: 825 LLQGGFHPDIIHCHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNLE------FGTHHIG 878
LL+ PD++H HDW + L K ++ K VFTIH L F H G
Sbjct: 117 LLREEPLPDVVHFHDWHTVFAGALIKKYF------KIPAVFTIHRLNKSKLPAFYFHEAG 170
Query: 879 KAMT--------------YADKATTVSHTYSKEVAGDPAIAPHLHKFYG----ILNGIDQ 920
+ AD TTVS Y + G F G + NGID
Sbjct: 171 LSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWG------FFRNFEGKITYVFNGIDC 224
Query: 921 DMWDPFNDKFIPVSYTSENLVEGKR-AAKEALQQKVGLRKS-DLPLVGIITRLTHQKGIH 978
W+ E+ + G R K++L K G+ + +G R QKG+
Sbjct: 225 SFWN-------------ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDR--GQKGVD 269
Query: 979 LIKHAIWRTLDRGG----QVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPL 1034
++ AI + + +++G DP ++ A L H + +
Sbjct: 270 VLLKAIEILSSKKEFQEMRFIIIGKG-DPELEG----WARSLEEKHGNVKVITEMLSREF 324
Query: 1035 SHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTV 1080
+Y DF+++PS FEP GL L AM G+IP+ GGL D +
Sbjct: 325 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 370
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 913 GILNGIDQDMWDPFNDKFIPVSYTSENLVEGKR-AAKEALQQKVGLRKS-DLPLVGIITR 970
G NGID W+ E+ + G R K++L K G+ + +G R
Sbjct: 1 GSHNGIDCSFWN-------------ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDR 47
Query: 971 LTHQKGIHLIKHAIWRTLDRGG----QVVLLGSAPDPRIQNDFVNLANELHSSHADRARL 1026
QKG+ ++ AI + + +++G DP ++ A L H + +
Sbjct: 48 --GQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG-DPELEG----WARSLEEKHGNVKVI 100
Query: 1027 CLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTV 1080
+Y DF+++PS FEP GL L AM G+IP+ GGL D +
Sbjct: 101 TEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 154
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 115/328 (35%), Gaps = 81/328 (24%)
Query: 777 IKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDKERFAFFCHAALEFLLQGGFHPDIIH 836
I + G EGLS L Q F+ G + +K + D+IH
Sbjct: 66 INIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTY------------------DLIH 107
Query: 837 CHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNL--------------EFGTHHIGKAMT 882
H W S V WL +D L + ++ T H L E I +
Sbjct: 108 SHYWLSGQVGWLLRD------LWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICE-QQ 160
Query: 883 YADKATTVSHTYSKEVA-------GDPAIAPHLHKFYGILNGIDQDMWDPFNDKFIPVSY 935
D A ++ +E+ DP + + G D +++ P ND+ S
Sbjct: 161 LVDNADVLAVNTQEEMQDLMHHYDADP------DRISVVSPGADVELYSPGNDRATERS- 213
Query: 936 TSENLVEGKRAAKEALQQKVGLRKSDLPLVGIITRLTHQKGIHLIKHAIW----RTLDRG 991
+R L KV V + RL KG ++ A+ R DR
Sbjct: 214 --------RRELGIPLHTKV---------VAFVGRLQPFKGPQVLIKAVAALFDRDPDRN 256
Query: 992 GQVVLLGSAPDPRIQND-FVNLANELHSSHADRARLCLTYDEPLSHLI--YAGADFILVP 1048
+V++ G P D + ++A EL R+ P S L+ Y AD + VP
Sbjct: 257 LRVIICGGPSGPNATPDTYRHMAEELGVEK----RIRFLDPRPPSELVAVYRAADIVAVP 312
Query: 1049 SIFEPCGLTQLVAMRYGSIPVVRKTGGL 1076
S E GL + A G+ + + GGL
Sbjct: 313 SFNESFGLVAMEAQASGTPVIAARVGGL 340
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 115/328 (35%), Gaps = 81/328 (24%)
Query: 777 IKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDKERFAFFCHAALEFLLQGGFHPDIIH 836
I + G EGLS L Q F+ G + +K + D+IH
Sbjct: 86 INIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTY------------------DLIH 127
Query: 837 CHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNL--------------EFGTHHIGKAMT 882
H W S V WL +D L + ++ T H L E I +
Sbjct: 128 SHYWLSGQVGWLLRD------LWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICE-QQ 180
Query: 883 YADKATTVSHTYSKEVA-------GDPAIAPHLHKFYGILNGIDQDMWDPFNDKFIPVSY 935
D A ++ +E+ DP + + G D +++ P ND+ S
Sbjct: 181 LVDNADVLAVNTQEEMQDLMHHYDADP------DRISVVSPGADVELYSPGNDRATERS- 233
Query: 936 TSENLVEGKRAAKEALQQKVGLRKSDLPLVGIITRLTHQKGIHLIKHAIW----RTLDRG 991
+R L KV V + RL KG ++ A+ R DR
Sbjct: 234 --------RRELGIPLHTKV---------VAFVGRLQPFKGPQVLIKAVAALFDRDPDRN 276
Query: 992 GQVVLLGSAPDPRIQND-FVNLANELHSSHADRARLCLTYDEPLSHLI--YAGADFILVP 1048
+V++ G P D + ++A EL R+ P S L+ Y AD + VP
Sbjct: 277 LRVIICGGPSGPNATPDTYRHMAEEL----GVEKRIRFLDPRPPSELVAVYRAADIVAVP 332
Query: 1049 SIFEPCGLTQLVAMRYGSIPVVRKTGGL 1076
S E GL + A G+ + + GGL
Sbjct: 333 SFNESFGLVAMEAQASGTPVIAARVGGL 360
>pdb|3UHF|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHF|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
Length = 274
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 58/145 (40%), Gaps = 12/145 (8%)
Query: 763 DLGY-NRSYHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCN-------NDKERF 814
DLG N + +I V+ V GLSV + F + YG DK+
Sbjct: 12 DLGTENLYFQSNAMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTI 71
Query: 815 AFFCHAALEFLLQGGFHPDIIHCHDWSSAPV-AWLFKDHYVHYGLSKARIVFTIHNLEFG 873
FC AL+F Q II C+ S+ + A K H+ YG+ A + TI L
Sbjct: 72 IKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDK 131
Query: 874 THHIGKAMTYADKATTVSHTYSKEV 898
I + A KAT S Y K +
Sbjct: 132 NKEI---LVIATKATIKSEEYQKRL 153
>pdb|3AHZ|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With Tris
pdb|3VIF|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With Gluconolactone
pdb|3VIG|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With 1-Deoxynojirimycin
pdb|3VIH|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With Glycerol
pdb|3VII|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With Bis-Tris
Length = 487
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 997 LGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEP 1053
LG P+ + N A L + DR +L LT++EPL+ + ++ + PSI P
Sbjct: 139 LGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNEPLTFMDGYASEIGMAPSINTP 195
>pdb|3AI0|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With
Para-Nitrophenyl-Beta-D-Glucopyranoside
pdb|3VIM|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With A New Glucopyranosidic
Product
pdb|3VIN|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With A New Glucopyranosidic
Product
pdb|3VIO|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With A New Glucopyranosidic
Product
pdb|3VIP|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite Neotermes
Koshunensis In Complex With A New Glucopyranosidic
Product
Length = 487
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 997 LGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEP 1053
LG P+ + N A L + DR +L LT+++PL+ + ++ + PSI P
Sbjct: 139 LGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNDPLTFMDGYASEIGMAPSINTP 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,469,284
Number of Sequences: 62578
Number of extensions: 1645503
Number of successful extensions: 3596
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3536
Number of HSP's gapped (non-prelim): 38
length of query: 1198
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1088
effective length of database: 8,089,757
effective search space: 8801655616
effective search space used: 8801655616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)