Query 046061
Match_columns 505
No_of_seqs 245 out of 2187
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.2E-56 4.8E-61 443.9 54.7 434 50-487 15-452 (455)
2 PRK10189 MATE family multidrug 100.0 5.2E-52 1.1E-56 416.6 53.9 432 50-484 27-468 (478)
3 PRK00187 multidrug efflux prot 100.0 8.3E-51 1.8E-55 408.0 56.5 425 50-477 8-443 (464)
4 PRK01766 multidrug efflux prot 100.0 5E-49 1.1E-53 396.8 56.3 430 50-482 10-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 1.2E-48 2.6E-53 388.7 54.1 422 50-482 7-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 1.2E-48 2.6E-53 392.0 53.8 422 50-477 10-435 (453)
7 TIGR01695 mviN integral membra 100.0 1.8E-36 3.8E-41 310.2 52.5 413 54-478 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.8E-36 3.8E-41 309.2 49.0 415 55-478 2-434 (488)
9 KOG1347 Uncharacterized membra 100.0 1.8E-37 3.8E-42 305.5 34.0 447 50-498 26-472 (473)
10 TIGR00797 matE putative efflux 100.0 8E-36 1.7E-40 290.1 43.0 338 60-400 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 3.9E-34 8.5E-39 285.0 45.8 406 54-477 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 4.4E-28 9.4E-33 241.6 50.6 387 82-479 5-404 (451)
13 PRK10459 colanic acid exporter 100.0 5.2E-28 1.1E-32 246.7 47.3 398 51-477 4-404 (492)
14 COG0728 MviN Uncharacterized m 100.0 5E-26 1.1E-30 222.4 52.3 421 51-479 6-438 (518)
15 COG2244 RfbX Membrane protein 100.0 1.1E-25 2.4E-30 229.1 42.7 391 50-462 4-396 (480)
16 PRK10367 DNA-damage-inducible 99.9 1.2E-20 2.6E-25 188.2 28.3 206 270-477 6-211 (441)
17 COG0534 NorM Na+-driven multid 99.9 8.1E-21 1.7E-25 189.4 26.7 209 269-480 13-223 (455)
18 PRK00187 multidrug efflux prot 99.9 3.2E-20 6.9E-25 186.8 27.8 206 268-477 5-214 (464)
19 PRK10189 MATE family multidrug 99.9 4.4E-20 9.4E-25 185.9 27.9 204 270-476 26-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 4E-20 8.6E-25 185.8 27.2 208 269-478 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 1.4E-19 3.1E-24 182.6 28.7 208 269-479 8-219 (456)
22 TIGR01695 mviN integral membra 99.8 6.5E-17 1.4E-21 165.8 32.7 203 50-254 221-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 2.3E-16 4.9E-21 148.2 33.0 270 55-341 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 2.1E-16 4.5E-21 153.7 27.5 194 281-477 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.7 4E-15 8.6E-20 148.7 30.8 203 50-254 196-403 (451)
26 PF01554 MatE: MatE; InterPro 99.7 4.5E-18 9.7E-23 146.4 7.6 162 281-444 1-162 (162)
27 COG0728 MviN Uncharacterized m 99.7 4.7E-14 1E-18 138.8 35.9 203 50-254 230-437 (518)
28 PF01554 MatE: MatE; InterPro 99.7 1.5E-17 3.3E-22 143.1 6.0 160 60-220 1-162 (162)
29 TIGR02900 spore_V_B stage V sp 99.7 4.8E-15 1.1E-19 151.4 25.5 200 50-254 223-434 (488)
30 PRK10459 colanic acid exporter 99.7 4.3E-13 9.2E-18 137.1 34.1 199 50-254 205-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 6.8E-13 1.5E-17 122.9 30.8 247 70-340 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 1.9E-13 4.2E-18 136.4 25.6 197 50-253 213-411 (416)
33 COG2244 RfbX Membrane protein 99.5 3.2E-12 7E-17 130.3 26.5 184 50-239 211-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 1.3E-09 2.7E-14 110.0 33.8 420 56-478 5-470 (549)
35 KOG2864 Nuclear division RFT1 99.3 5.2E-08 1.1E-12 91.8 32.9 415 51-478 7-449 (530)
36 KOG1347 Uncharacterized membra 99.3 3.8E-10 8.3E-15 112.2 20.2 206 269-478 24-230 (473)
37 PF07260 ANKH: Progressive ank 98.9 7.9E-06 1.7E-10 74.2 29.1 259 50-317 9-283 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.7E-05 3.7E-10 66.4 17.3 79 174-254 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.5 3.2E-05 6.8E-10 78.5 21.8 203 51-254 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.3 0.00018 3.8E-09 67.2 22.6 188 276-477 2-190 (273)
41 PF07260 ANKH: Progressive ank 98.1 0.0028 6E-08 58.1 23.9 160 268-433 6-168 (345)
42 PF14667 Polysacc_synt_C: Poly 98.1 2.8E-05 6E-10 65.2 10.2 79 397-478 2-80 (146)
43 COG4267 Predicted membrane pro 98.1 0.0093 2E-07 55.8 30.1 341 100-467 72-435 (467)
44 PF13440 Polysacc_synt_3: Poly 98.0 0.004 8.8E-08 57.2 22.7 167 293-476 4-171 (251)
45 KOG2864 Nuclear division RFT1 97.8 0.0058 1.3E-07 58.6 21.3 201 52-254 239-449 (530)
46 COG4267 Predicted membrane pro 80.8 56 0.0012 31.6 19.7 136 325-477 75-210 (467)
47 TIGR00822 EII-Sor PTS system, 71.4 85 0.0018 28.9 13.4 173 307-502 93-265 (265)
48 PF00558 Vpu: Vpu protein; In 69.2 6.5 0.00014 28.4 3.1 27 466-492 21-47 (81)
49 PRK09757 PTS system N-acetylga 58.8 1.5E+02 0.0033 27.4 18.5 35 322-356 109-143 (267)
50 COG0798 ACR3 Arsenite efflux p 55.4 1.9E+02 0.0042 27.5 15.7 199 58-267 143-342 (342)
51 PF05975 EcsB: Bacterial ABC t 53.8 2.3E+02 0.005 27.9 17.0 36 346-381 89-124 (386)
52 PF04505 Dispanin: Interferon- 51.0 96 0.0021 22.7 6.7 38 330-367 36-73 (82)
53 PF12794 MscS_TM: Mechanosensi 39.4 3.6E+02 0.0078 26.0 22.4 28 348-375 119-146 (340)
54 KOG3880 Predicted small molecu 38.4 78 0.0017 30.0 5.5 28 45-72 240-267 (409)
55 PRK03612 spermidine synthase; 36.5 5E+02 0.011 26.8 22.9 30 60-89 22-52 (521)
56 PRK09546 zntB zinc transporter 32.8 1.2E+02 0.0027 28.9 6.4 51 428-480 266-323 (324)
57 TIGR00383 corA magnesium Mg(2+ 32.8 1.3E+02 0.0029 28.5 6.6 54 425-480 257-317 (318)
58 PF05977 MFS_3: Transmembrane 31.6 6E+02 0.013 26.3 36.5 45 54-98 12-58 (524)
59 PF05313 Pox_P21: Poxvirus P21 29.3 3.1E+02 0.0067 23.4 7.1 27 228-254 135-161 (189)
60 PRK11085 magnesium/nickel/coba 24.9 2.5E+02 0.0055 26.8 6.8 54 424-480 254-315 (316)
61 PF06963 FPN1: Ferroportin1 (F 24.0 7.5E+02 0.016 24.9 17.0 55 308-372 38-92 (432)
62 COG0598 CorA Mg2+ and Co2+ tra 23.6 6.5E+02 0.014 24.0 10.2 50 428-480 264-321 (322)
63 PF03904 DUF334: Domain of unk 22.7 3.4E+02 0.0075 24.2 6.5 40 124-163 142-181 (230)
64 PRK10929 putative mechanosensi 22.7 1.2E+03 0.026 26.8 22.0 28 346-374 591-618 (1109)
65 PF03547 Mem_trans: Membrane t 21.2 6.9E+02 0.015 24.3 9.5 20 355-374 31-50 (385)
66 COG3715 ManY Phosphotransferas 21.0 6.7E+02 0.014 23.2 17.2 63 321-383 107-170 (265)
67 PF04791 LMBR1: LMBR1-like mem 20.9 8.8E+02 0.019 24.5 12.1 51 315-365 76-130 (471)
68 PRK00523 hypothetical protein; 20.7 2.1E+02 0.0044 20.3 3.8 33 454-486 4-36 (72)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.2e-56 Score=443.88 Aligned_cols=434 Identities=24% Similarity=0.366 Sum_probs=411.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|+++++++|++++++.+.+++++|++++||+|++++++.+++.++.. +......|++.|.++.+||++|+||+++++
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~ 93 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRKKAK 93 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchHHHH
Confidence 7899999999999999999999999999999999999999999999998 457788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSV 208 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 208 (505)
+..++++.+.++++++..+ .+.+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+.+|+.|+++.+++.++
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~ 173 (455)
T COG0534 94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILL 173 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 9999999999999988777 999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cC-cccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCCHHhhhCHHHHHHHHHHHHHH
Q 046061 209 GVFLLHILLTWIVVFV-LD-YGLLGAALTLGLSWWLLVIINGLYIVLSPS-CKDTWTGLSIKAFRGIWPYFKLTVASAVM 285 (505)
Q Consensus 209 ~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 285 (505)
+++++|++++++++++ ++ +|+.|+++||++++++..++..+++.++++ ......+..+.+++.+|++++.|+|.+++
T Consensus 174 ~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~ 253 (455)
T COG0534 174 LGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLE 253 (455)
T ss_pred HHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHH
Confidence 9999999999999998 57 999999999999999999999999998854 22222233345568999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 046061 286 LCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILIS 365 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 365 (505)
+..+...+...+.++++++ ++.+|+|+++.++.++.++++.+++++..|.+++++|+||.|++++..+.+.+++++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~ 331 (455)
T COG0534 254 SLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIA 331 (455)
T ss_pred HHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHH
Q 046061 366 IVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCIL 445 (505)
Q Consensus 366 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 445 (505)
+..+++++++++++.++|++|+|+.+.+..++++....+++++++.+..+++||.||++.+++.++.+.|.+.+|+.+++
T Consensus 332 ~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l 411 (455)
T COG0534 332 LLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLL 411 (455)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 046061 446 GFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKA 487 (505)
Q Consensus 446 ~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (505)
.+.. +|..|+|+++.+++.++.++..+++++++|+++..+.
T Consensus 412 ~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 412 GFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred hhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 8776 9999999999999999999999999999998876654
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=5.2e-52 Score=416.65 Aligned_cols=432 Identities=15% Similarity=0.161 Sum_probs=398.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++.. +...+..|++++.++.++|++|++|+++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 5899999999999999999999999999999999999999999999987 456688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIG--QSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYM 206 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (505)
+..++++.+..+.+++..+ .+.+.++++.+++ .|+++.+.+..|+++..++.|+..+.....+++|+.|+++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 9999999999999998888 8888999999884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----CcccchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCC-CCHHhhhCHHHHHHHH
Q 046061 207 SVGVFLLHILLTWIVVFVL----DYGLLGAALTLGLSWWLLVIINGLYIVLSPS--CKDTWTG-LSIKAFRGIWPYFKLT 279 (505)
Q Consensus 207 ~i~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~l~~~~ 279 (505)
+++..++|++++++++++. ++|+.|+++|+.+++++..++..+++.++++ .+.++++ +...+++.+|++++.|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999863 7899999999999999998887766654312 2222221 1123467899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 046061 280 VASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNA 359 (505)
Q Consensus 280 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~ 359 (505)
+|..++.........+.+.+++.++ ++++|+|+++.++.++.+++..+++++..|.+++++|+||.+++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999888888888886 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhh
Q 046061 360 TGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGL 439 (505)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 439 (505)
+++.+++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+++.||++.++++++.+.|++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 046061 440 PIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEV 484 (505)
Q Consensus 440 ~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (505)
|+.|++....++|..|+|++..+++.+..++..+++++.+|+++.
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence 999999877789999999999999999999999999999998843
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=8.3e-51 Score=408.04 Aligned_cols=425 Identities=21% Similarity=0.323 Sum_probs=388.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++++..+.+||++|++|+++++
T Consensus 8 ~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~ 86 (464)
T PRK00187 8 ELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEGAT 86 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 78999999999999999999999999999999999999999999999884 45678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVG 209 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 209 (505)
+..+.++.+..+++++..++..+.++++.+++.++++.+.+.+|+++.+++.++..+....++++|+.|+++.+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~ 166 (464)
T PRK00187 87 RLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLA 166 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999999999887775557799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc----CcccchhHHHHHHHHHHHHHHHHHHHHhcccc-cccc-CCCCHHhhhCHHHHHHHHHHHH
Q 046061 210 VFLLHILLTWIVVFVL----DYGLLGAALTLGLSWWLLVIINGLYIVLSPSC-KDTW-TGLSIKAFRGIWPYFKLTVASA 283 (505)
Q Consensus 210 ~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~p~~ 283 (505)
+.++|++++++++++. ++|+.|+++|+.+++.+..+...++++++++. +.+. ++..+.+++..|++++.++|.+
T Consensus 167 ~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~ 246 (464)
T PRK00187 167 GAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIG 246 (464)
T ss_pred HHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHH
Confidence 9999999999999763 58999999999999988887777777654322 1111 1122234567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 046061 284 VMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGIL 363 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 363 (505)
+++..+.....+++.++++++ ++++|++++++++..+.+.+..+++++..+.+++++|+||+|++++..+.++.++.+
T Consensus 247 ~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~ 324 (464)
T PRK00187 247 GTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAV 324 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC--cH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhh
Q 046061 364 ISIVFCAIVLIFRVGLSKLFTS--DS---EVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIG 438 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 438 (505)
++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.|+++.+++.++.+.|+++
T Consensus 325 ~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ 404 (464)
T PRK00187 325 VMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVG 404 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999964 43 678889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 439 LPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 439 i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
+|+.|++...+++|+.|+|+++.+++.+..+.....+++
T Consensus 405 ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 405 APLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999999999999999988877766644
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=5e-49 Score=396.77 Aligned_cols=430 Identities=22% Similarity=0.363 Sum_probs=395.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.. ....+..|++.+..+.+||++|++|+++.+
T Consensus 10 ~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~ 88 (456)
T PRK01766 10 EARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRERIA 88 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7899999999999999999999999999999999999999999988876 345577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSV 208 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 208 (505)
+..+.++.+.++.+++..+ ++.+.+++..+++.++++.+.+..|+++.+++.++..+...+++++|+.|+++.+++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 168 (456)
T PRK01766 89 HQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGF 168 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999988888 888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh----cCcccchhHHHHHHHHHHHHHHHHHHHHhccccc-c-ccCCCCHHhhhCHHHHHHHHHHH
Q 046061 209 GVFLLHILLTWIVVFV----LDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCK-D-TWTGLSIKAFRGIWPYFKLTVAS 282 (505)
Q Consensus 209 ~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~p~ 282 (505)
++.++|++++++++++ +++|+.|+++++.+++++..++..++++++++.+ . .+.++...+++..|++++.++|.
T Consensus 169 i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~ 248 (456)
T PRK01766 169 LGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPI 248 (456)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchH
Confidence 9999999999999864 3589999999999999999998888877653321 1 11222233456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 046061 283 AVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGI 362 (505)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 362 (505)
.++...+...+.++..++++++ ++++++|+++.++.++..++..+++.+..+.+++++|+||++++++..+.++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~ 326 (456)
T PRK01766 249 GLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGL 326 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHH
Q 046061 363 LISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIG 442 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 442 (505)
.++++.+++++.+++++.++|++|+++.+.+..++++..+..++.+++....+++++.||++.+++.++++.|++.+|..
T Consensus 327 ~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~ 406 (456)
T PRK01766 327 GMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLG 406 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 046061 443 CILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNT 482 (505)
Q Consensus 443 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 482 (505)
+++...+++|+.|+|+++.+++.+..++..+++++.+|+.
T Consensus 407 ~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 407 YILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888899999999999999999998888887765544
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=388.71 Aligned_cols=422 Identities=17% Similarity=0.184 Sum_probs=372.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHL-GALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAM 128 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 128 (505)
+.|+++|+++|.++++++..+++.+|+.+++|+ |++++++++++.++..+ ......+++.+.++.+||++|++|++++
T Consensus 7 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~~ 85 (441)
T PRK10367 7 SDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQAL 85 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 678999999999999999999999999999998 77899999999999884 4667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 046061 129 GLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMS 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (505)
++..++++.+.++.+++..+ ...+.++++.+++.++++.+.+.+|+++.+++.|+..+..++.+++|+.|+++.+++.+
T Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ 165 (441)
T PRK10367 86 ARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILL 165 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 99999999999999998887 78888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccc-cccCCCCHHhhhCHHHHHHHHHHHHHHH
Q 046061 208 VGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCK-DTWTGLSIKAFRGIWPYFKLTVASAVML 286 (505)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 286 (505)
+++.++|+++++++++.+++|+.|+++|+.+++.+..++..+++.++++.+ .+.+..+.+.++.+|++++.|.|..+++
T Consensus 166 ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 245 (441)
T PRK10367 166 VVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRS 245 (441)
T ss_pred HHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHH
Confidence 999999999999999988999999999999999999988777776542212 1111111111246899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 046061 287 CLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISI 366 (505)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 366 (505)
..+...+.+.+.++++++ ++++|+|+++.++.++.+++..|++++.+|.+++++|+||++++|+..+++.+++...+.
T Consensus 246 ~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~ 323 (441)
T PRK10367 246 LLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVAL 323 (441)
T ss_pred HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCc---chHHHHHHHHHHHHhhhhHHH
Q 046061 367 VFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGW---QAVVAYVNLATYYIIGLPIGC 443 (505)
Q Consensus 367 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l~~ 443 (505)
+++++++++++++.++|++|+|+.+.+..++++.++..+......+...++++.+| ++.++.++.++.|+..+
T Consensus 324 ~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~---- 399 (441)
T PRK10367 324 LFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL---- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999988764433355555555666666 99999999998764222
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 046061 444 ILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNT 482 (505)
Q Consensus 444 ~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 482 (505)
.. +.+|..|+|++..+++.++.++..+++++. |++
T Consensus 400 -~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 400 -TL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -HH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 21 247999999999999999999888776664 744
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.2e-48 Score=391.96 Aligned_cols=422 Identities=20% Similarity=0.208 Sum_probs=385.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHL-GALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAM 128 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 128 (505)
..|+++++++|.+++++...+++++|+.+++|+ |++++++++++.++..+ ......+++.+.++.++|++|++|+|+.
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~~ 88 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLEKA 88 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHHHH
Confidence 789999999999999999999999999999995 99999999999999884 4557789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 046061 129 GLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMS 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (505)
++..++++.+..+++++..+ .+.+.++++.+++.++++.+.+.+|+++..++.++..+......++|+.|+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 168 (453)
T PRK09575 89 KRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLM 168 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999998888 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccC-CCCHHhhhCHHHHHHHHHHHHHHH
Q 046061 208 VGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWT-GLSIKAFRGIWPYFKLTVASAVML 286 (505)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~p~~~~~ 286 (505)
+.+.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++.. .+++ +..+.+++..|++++.|.|..++.
T Consensus 169 ~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 169 VIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRAN-IRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCce-eEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 99999999999999988899999999999999999999888777654332 2221 112234567899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 046061 287 CLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISI 366 (505)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 366 (505)
....+...+.+.+++++++ ++++|+|+++.++..+..++..+++.+..|.+++++|+||+|++++..+.++++++..++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998873 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCC-cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHH
Q 046061 367 VFCAIVLIFRVGLSKLFTS-DSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCIL 445 (505)
Q Consensus 367 ~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 445 (505)
+.++++..+++++.++|++ |+|+.+.+.+++++.+++.++++++.+..+.+++.|+++.++..+... +++++|+.+++
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll 405 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFIL 405 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHH
Confidence 9999999999999999995 788999999999999999999999999999999999999999988776 47899999998
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 446 GFKTILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 446 ~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
... +|+.|+|+++.+++.+..++..+++++
T Consensus 406 ~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 406 PKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 765 899999999999999988877766654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.8e-36 Score=310.23 Aligned_cols=413 Identities=13% Similarity=0.094 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHH
Q 046061 54 LWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALEL-AGASIASVGIQGLAYGIM-LGMASAVQTVCGQAYGAKKYSAMGL 130 (505)
Q Consensus 54 i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~ 130 (505)
+.|.+.-.+++++++.+++++|.++++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ +++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678888999999999999999999999 799999 899999999874433233 568888777776654322 57777
Q ss_pred HHHHHHHHHHHHH-HHHHH-HHHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 046061 131 ICQRAIVLHLGAA-VILTF-LYWYSSPILRAI--GQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYM 206 (505)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (505)
.+.+++....+.+ ++..+ .+.+++++..++ +.+++..+.+.+|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666655444 44455 777888888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHH
Q 046061 207 SVGVFLLHILLTWIVVFVLDYGLLGAA--LTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAV 284 (505)
Q Consensus 207 ~i~~~~~~i~l~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 284 (505)
++..++++++..+++. .++|..|++ ++++++..+..++..++.++++ .+.+. +.+ .+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAG-FLLKP-RFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccC-cCC-CCChhHHHHHHHHHHHHH
Confidence 9999888776533333 578999988 9999999999888777766542 21111 111 234678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 046061 285 MLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQ-FMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGIL 363 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~-~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 363 (505)
++...++...+|+.+.+.++ ++++++|+.+.++.++... +..+++++..|.++++++++|+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998865554 6789999999999988764 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhh
Q 046061 364 ISIVFCAIVLIFRVGLSKLFTS----DSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGL 439 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 439 (505)
++.|++++++.+++++.+++.+ |+|..+.+..+++++++..++.+++.++...+++.||++.+++.+.... ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999976 4567888999999999999999999999999999999999999999986 7899
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 046061 440 PIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478 (505)
Q Consensus 440 ~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 478 (505)
++++++.+. +|..|+|+++.+++.+..++..++++|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988655 8999999999999999988887777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.8e-36 Score=309.24 Aligned_cols=415 Identities=15% Similarity=0.146 Sum_probs=349.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 046061 55 WLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQ 133 (505)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 133 (505)
.|.+.|.+++++...+.+++|+++++| +|++++|+++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 6999999999999998865554567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 046061 134 RAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFL 212 (505)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 212 (505)
+++.+..+.+++..+ +..+.+++...++.+++. ..++++.++..++..+....++.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 999999999998887 777888887776655543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCcccchhHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHhhhCHHHHHHHHHHHHHH
Q 046061 213 LHILLTWIVVFV-----LDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDT--WTGLSIKAFRGIWPYFKLTVASAVM 285 (505)
Q Consensus 213 ~~i~l~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~p~~~~ 285 (505)
+++.+...++.. .+.++.|+++++.++..+..++..++.+++++.+.+ +.+....+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776655542 245678888999999999888776665544222211 1111223456889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc--h---h---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 046061 286 LCLEIWYNQGLVLISGLLTN--P---T---ISLDSI-SICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIV 356 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~a~~-~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~ 356 (505)
++...+...+|+.++++... | . +.++.| +.+.++.++...+..+++++..|.++++.|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999998876431 0 1 233333 3566778888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 046061 357 VNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYI 436 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 436 (505)
+.++...++.|+++++..+++++..++.++++ +.++++++++..++..++.+..+++++.||+|..++.+.+.. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999986543 678899999999999999999999999999999999999987 8
Q ss_pred hhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 046061 437 IGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478 (505)
Q Consensus 437 ~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 478 (505)
+++++++.+...|.+|..|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998888644569999999999999999999988888763
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=305.55 Aligned_cols=447 Identities=43% Similarity=0.704 Sum_probs=426.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
+.|++++++.|.++..+.+.+...+++.++||+|+.++++.+++.+..+.....+..|+..+..++++|++|+++++...
T Consensus 26 e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg 105 (473)
T KOG1347|consen 26 ESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTALG 105 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchhh
Confidence 88999999999999999999999999999999999999999999999997788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVG 209 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 209 (505)
.+.+++..+....+++...++.+.++++..++.++++...+..|.++..+..+.+........++|++++.....+....
T Consensus 106 ~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~ 185 (473)
T KOG1347|consen 106 VYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLV 185 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHHH
Q 046061 210 VFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLE 289 (505)
Q Consensus 210 ~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~ 289 (505)
...+|+.+++++++..++|..|++++..+++++...+...|..... ....|..+..+ ++.++++++.++|..++..++
T Consensus 186 ~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE 263 (473)
T KOG1347|consen 186 ALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLE 263 (473)
T ss_pred HHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHH
Confidence 9999999999999999999999999999999999999888887764 56667777666 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 046061 290 IWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFC 369 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (505)
++.+.+...+.|.++....++++.++..++....++++.+++.+...++++.+|+++.+++|...+.+....+..+...+
T Consensus 264 ~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~ 343 (473)
T KOG1347|consen 264 WWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLG 343 (473)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999866789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhc
Q 046061 370 AIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKT 449 (505)
Q Consensus 370 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 449 (505)
..+..+.+.+..+|++|+++.+...+..++++...++++.+.+..++.++.|+++...++++...++..+|+...+....
T Consensus 344 ~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~ 423 (473)
T KOG1347|consen 344 TTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFT 423 (473)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998778
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCcchh
Q 046061 450 ILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKAADRLRKSSNEE 498 (505)
Q Consensus 450 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
++|..|.|.++..+..+..........+.+|.+..++..++...+.++.
T Consensus 424 ~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 424 KFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred ecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 8999999999999988888888888899999999999999988776653
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=8e-36 Score=290.11 Aligned_cols=338 Identities=28% Similarity=0.456 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 046061 60 ASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLH 139 (505)
Q Consensus 60 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (505)
|.+++++...+.+.+|+.+++++|++++|+++++.++.. +...+..|++++..+.+++++|++|+++.++..+.++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999988877 4566788999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Q 046061 140 LGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLT 218 (505)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~ 218 (505)
.+.+++..+ ++.+.+++..+++.+++..+.+..++++.+++.++..+..+..+.+|+.||++.++..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 999999888 8889999999988788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-cccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 219 WIVVF-VLD-YGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGL 296 (505)
Q Consensus 219 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~ 296 (505)
++++. .++ +|+.|+++++.++.++..++..++.+++++.+.++++....+++..|++++++.|.+++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 556 7899999999999999999888777664333333222223345788999999999999999999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046061 297 VLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFR 376 (505)
Q Consensus 297 ~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (505)
+.+++.++ ++++++|+++.++.++...++.+++++..|.++++++++|.++.++..+++.++.+.++++.+.++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988875 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcHHHHHHHHHHHHHH
Q 046061 377 VGLSKLFTSDSEVIEAVSNLTPLL 400 (505)
Q Consensus 377 ~~i~~l~~~~~~~~~~~~~~l~~~ 400 (505)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=3.9e-34 Score=285.01 Aligned_cols=406 Identities=11% Similarity=-0.011 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHH
Q 046061 54 LWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLIC 132 (505)
Q Consensus 54 i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 132 (505)
+.|.+.....+++...+.+++...+++| +|++++|.++..+++...+......|++++.++.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5678888899999999999999999999 69999999999999888665655788888888999987 67888999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 046061 133 QRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVF 211 (505)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 211 (505)
++++.+.++.+++.++ ++.+.+++...++.+++. ..+..+..+..+...+.....+.+|+.|+++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888 888889998877766653 23456666666667778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHHHHH
Q 046061 212 LLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIW 291 (505)
Q Consensus 212 ~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~ 291 (505)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...++++++++.+.+..+.+ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444433 2399999999999999998877777765533222111122 2456789999999999999999999
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 292 YNQGLVLISGLLTNPTISLDSISICLNYLN-WDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCA 370 (505)
Q Consensus 292 ~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~-~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (505)
....++.++++.. |++++|+|+++.|+.+ +...+..+++++..|.++++ +|.++.++..++..+....+..+.++
T Consensus 234 ~~~~~~~~l~~~~-g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (416)
T PRK15099 234 AYVMMRNLLAAHY-SWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASF 309 (416)
T ss_pred HHHHHHHHHHhcC-CHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997444 3889999999999977 45899999999999999995 56788999999999999999999999
Q ss_pred HHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhcC
Q 046061 371 IVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTI 450 (505)
Q Consensus 371 ~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~ 450 (505)
+++++++++++++.+|+ ++.+.+++++++++.++...+...+..+...++++.....+... .++++++++++.+.
T Consensus 310 ~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~-- 384 (416)
T PRK15099 310 TVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL-- 384 (416)
T ss_pred HHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--
Confidence 99999999999998866 55678899999999999888888887777888887776666554 48899999998766
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 451 LGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 451 ~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
+|..|+++++.+++++...+..+...+
T Consensus 385 ~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 385 HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877665553
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=4.4e-28 Score=241.64 Aligned_cols=387 Identities=15% Similarity=0.120 Sum_probs=333.3
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 046061 82 LGAL-ELAGASIASVGIQGLAYGIM-LGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTF-LYWYSSPILR 158 (505)
Q Consensus 82 lg~~-~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 158 (505)
+|.+ +..++.++.++..++...+. .+++++..|..++.. ++++++.++..+..+.+..+.++.+++ .+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655 45688899999986543343 468999999999998 889999999999998888888888888 8899999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhcCcc---cchhH
Q 046061 159 AI--GQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYG---LLGAA 233 (505)
Q Consensus 159 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~g~~ 233 (505)
.+ +.+++..+.+.+++++.++..++.++..++.+++|+++|...+...++..++..++...++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 87 56778889999999999999999999999999999999999999999888877665444333 3456 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 046061 234 LTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSI 313 (505)
Q Consensus 234 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 313 (505)
++..++.++..++.+...++.+ .+.+. .++. ..+..|++++...|..+.+...++...+++.+.+.++ +..++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFG-FRFRP-KFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-Ccccc-cCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 9999999999998888877652 22111 1111 2256899999999999999999999999999999886 5679999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC----cHH
Q 046061 314 SICLNYLNWDM-QFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTS----DSE 388 (505)
Q Consensus 314 ~i~~~i~~~~~-~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 388 (505)
+.++++.++.. .+..+++++..|.+++...++|.++.++..++.++....+.+|++++++.+++++++++.. |++
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999877 5677999999999999999999999999999999999999999999999999999999862 455
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 046061 389 VIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQT 468 (505)
Q Consensus 389 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~ 468 (505)
..+....++.+++++.++.+++..+...+++.||+|.++..+..+. ++++.+++++.+. +|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 5777889999999999999999999999999999999999999987 8999999888665 999999999999999999
Q ss_pred HHHHHHHhcCC
Q 046061 469 TTLIILTARTN 479 (505)
Q Consensus 469 ~~~~~~~~~~~ 479 (505)
++....++|+.
T Consensus 394 ~~l~~~l~r~~ 404 (451)
T PF03023_consen 394 LLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHc
Confidence 98888887763
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=5.2e-28 Score=246.67 Aligned_cols=398 Identities=12% Similarity=0.098 Sum_probs=321.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 51 SRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 51 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
.++..+-+.+..++++...+.+++..++++| +|++++|.++.+.++..++......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 3567788888999999999999999999999 69999999999999999776667788887642 21 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSV 208 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 208 (505)
+..++.+.+..+.+++..+ .+.+++++..+++. ++ ....+++.++..++..+.......++..++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 3455666677777776666 66666666655543 33 234577778888888888889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHH
Q 046061 209 GVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCL 288 (505)
Q Consensus 209 ~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~ 288 (505)
...+...++...+.. .++|+.+.+++.++++.+..++...... + +.+.++ ..+.+..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-K-IYRPAL----HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-c-cCCccc----eecHHHHHHHHhhhHHHHHHHHH
Confidence 888887777766655 4789999999999998877765433222 2 122111 11246689999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 046061 289 EIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDM-QFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIV 367 (505)
Q Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 367 (505)
..+....|+.+++.+. |++++|.|+.+.++.+... .+...++++..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 5899999999999988755 44555788999999886 567889999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHH
Q 046061 368 FCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGF 447 (505)
Q Consensus 368 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 447 (505)
+.+++.+++++++.++.+++ ++.+...++++++..++..+..+...++++.||+|..+..+.+.. ++.+|..+.+..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~ 376 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh
Confidence 99999999999999988765 667889999999999999999999999999999999998888876 777887777755
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 448 KTILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 448 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
. +|..|+++++.+++.+..+...+..+|
T Consensus 377 ~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 L--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred h--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 899999999999999988888776744
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=5e-26 Score=222.41 Aligned_cols=421 Identities=14% Similarity=0.062 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChh-HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHhhhcCCCcch
Q 046061 51 SRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGAL-ELAGASIASVGIQGLAYGIML-GMASAVQTVCGQAYGAKKYSA 127 (505)
Q Consensus 51 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~-~~~~~~~~~~i~~~~~~~~~~-gl~~~~~~~~s~~~~~~~~~~ 127 (505)
.+.++|.++-....++++.+.+++...+++. +|+. .-.++.++..+.+++-..+.. .++++..|...++..++++++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3567777778888899999999999999999 6884 667899999999965544444 479999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHc-CC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchH
Q 046061 128 MGLICQRAIVLHLGAAVILTF-LYWYSSPILRAI-GQ--SDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPL 203 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (505)
.++...........+.+.+++ ..++++++.+.+ +. +++....+....+++.|.+++.++.....+.+++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 777777777566667777777 778888888454 32 23333367888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHH
Q 046061 204 AYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASA 283 (505)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 283 (505)
.+..+..++.-+.....+....+.-..+.++++.++.+...++.+..++|.+-..+.. ++. +.+..|++.+...|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~--~~~-~~~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR--FGF-KDPGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC--CCC-CchhHHHHHHHHHHHH
Confidence 9999988888775555444433223678889999999999999999998763222111 111 1268899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 046061 284 VMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDM-QFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGI 362 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 362 (505)
+.....++...+++.+.+.+. +..++.++.+++++++.. .+..+++++..|.+|++..++|.++.++..++++++++
T Consensus 243 l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999886 456999999999999988 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhh
Q 046061 363 LISIVFCAIVLIFRVGLSKLFTS----DSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIG 438 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 438 (505)
.+++|.++++..+++|++.++.. +++........+..++++.++..+..++...+++.+++|.++.+++++. +++
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHH
Confidence 99999999999999999998853 2333566888999999999999999999999999999999999999987 999
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046061 439 LPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTN 479 (505)
Q Consensus 439 i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 479 (505)
+.+++.+... +|..|++.++.++..+...+.++..+|+.
T Consensus 400 ~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 400 ILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999777554 89999999999998888888877777754
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=1.1e-25 Score=229.06 Aligned_cols=391 Identities=14% Similarity=0.126 Sum_probs=310.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAM 128 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 128 (505)
..+++.|.+.....+++.+.+.+++....++| +|++++|.++.+.++.+++......|++.+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45788889999999999999999999999999 69999999999999999877777899999999999988765555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 046061 129 GLI-CQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMS 207 (505)
Q Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (505)
... ....+....+.+.+.........+. ++ .....+++..+..+.........+.+|+.++++......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 544 4444444444444444322222221 11 233456778889999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHH
Q 046061 208 VGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLC 287 (505)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ 287 (505)
+.. ..-....+.+.. .......++...+..........+..++++...+. .....++..|+++++++|..+.+.
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP--ILRFSLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccCchhHHHHHHHHHhhHHHHHHH
Confidence 444 111122122221 34455566666666666655555554221111111 111135788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 046061 288 LEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIV 367 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 367 (505)
...+....|+.+++++. |++++|.|+.++++......+..+++.+..|.+++...+++.++.++..+++.++...+++|
T Consensus 228 ~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHH
Q 046061 368 FCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGF 447 (505)
Q Consensus 368 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 447 (505)
..+++..+++++..++.+++ ++.+...+.++++..++.++.......+++.|+++..++.+.++. +.++.+++++.+
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~ 383 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIP 383 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHH
Confidence 99999999999999998776 334889999999999999999999999999999999999999987 888888888865
Q ss_pred hcCCCchHHHHHHHH
Q 046061 448 KTILGVAGIWWGMII 462 (505)
Q Consensus 448 ~~~~g~~G~~~a~~~ 462 (505)
. +|..|+..++..
T Consensus 384 ~--~g~~g~~~a~~~ 396 (480)
T COG2244 384 R--FGLIGAAIATAS 396 (480)
T ss_pred h--hhhhhHHHHHHH
Confidence 5 889999988833
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=188.17 Aligned_cols=206 Identities=10% Similarity=0.075 Sum_probs=193.1
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 046061 270 RGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRV 349 (505)
Q Consensus 270 ~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~ 349 (505)
+..|++++.++|..++++...+...+|+.++++++ |++++|+.+++.++.++...+..+++.+..+.++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 56789999999999999999999999999999986 37789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHH
Q 046061 350 AKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYV 429 (505)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 429 (505)
+++..++++.++++.+++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+...+.+++++.|+++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 430 NLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 430 ~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
++++. ++++++++++.+.+++|+.|+++|+.+++.+..++..+++.+
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 889999999988778999999999999999988776666554
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=8.1e-21 Score=189.39 Aligned_cols=209 Identities=20% Similarity=0.270 Sum_probs=199.9
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 046061 269 FRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPR 348 (505)
Q Consensus 269 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~ 348 (505)
.+..|+++++++|..+.++...+.+.+|+.++|+++ ++++|+-++++++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 457899999999999999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHH
Q 046061 349 VAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAY 428 (505)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 428 (505)
++++..++++...+.++++..++...+++++..++.+++|+.+.+..|+++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHh-cC-CCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 429 VNLATYYIIGLPIGCILGFK-TI-LGVAGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 429 ~~~~~~~~~~i~l~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
.+.++. ++|+.++++++.. .+ +|+.|+++|+++++.+..++..+++.+++.
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998 9999999999887 45 999999999999999999998888887653
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=3.2e-20 Score=186.82 Aligned_cols=206 Identities=17% Similarity=0.067 Sum_probs=188.0
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 046061 268 AFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHP 347 (505)
Q Consensus 268 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~ 347 (505)
+++..|++++.++|.+++++...+...+|+.++++++ ++++|+++++.++.++...+..+++++..|.+++++|++|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3467899999999999999999999999999999986 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHH
Q 046061 348 RVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVA 427 (505)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 427 (505)
+++++..+.++.+.++++++..++.. +.+++..+|+.|+|+.+.+..|+++..++.++..+...+.+++++.|+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 428 YVNLATYYIIGLPIGCILGFK----TILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 428 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
+.++++. +++++++|++... |++|+.|+++|+.+++....+...+++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 7799999987643 35899999999999988776665555544
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=4.4e-20 Score=185.88 Aligned_cols=204 Identities=17% Similarity=0.158 Sum_probs=189.8
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 046061 270 RGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRV 349 (505)
Q Consensus 270 ~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~ 349 (505)
+..|++++.++|..++++...+...+|+.++++++ ++++|+++++.++..+...+..+++.+..+.+++++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 55899999999999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC--CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHH
Q 046061 350 AKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFT--SDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVA 427 (505)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 427 (505)
+++..+.++.+++.++++.+++.+++++++..++. .|+|+.+.+..++++..++.++..+.....+++++.|+++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 046061 428 YVNLATYYIIGLPIGCILGFK----TILGVAGIWWGMIIGVLLQTTTLIILTA 476 (505)
Q Consensus 428 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 476 (505)
+.+++.. ++++++.+++... +++|+.|+|+|+.+++.+..++..+++.
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 8899999888753 4789999999999999998877655554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=4e-20 Score=185.82 Aligned_cols=208 Identities=11% Similarity=0.040 Sum_probs=194.7
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 046061 269 FRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPR 348 (505)
Q Consensus 269 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~ 348 (505)
.+..|++++.++|..++++...+...+|+.+++++. |++++++++++.++.++...+..+++.+..+.+++++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 357789999999999999999999999999999974 3789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHH
Q 046061 349 VAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAY 428 (505)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 428 (505)
++++..++++.+..+++++++++..++++++..+++.|+++.+.+..++++..++.++..+......++++.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 046061 429 VNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478 (505)
Q Consensus 429 ~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 478 (505)
.++.+. ++++++++++...+++|+.|+++++.+++.+..++..++++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999886 8999999999887889999999999999999888876666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=1.4e-19 Score=182.63 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=192.8
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 046061 269 FRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPR 348 (505)
Q Consensus 269 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~ 348 (505)
++.+|+++++++|..++++...+...+|+.++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|.+
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 467899999999999999999999999999999986 688999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHH
Q 046061 349 VAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAY 428 (505)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 428 (505)
+.++..+.++.+.+.++++++++++++++++..+++.|+++.+.+..++++..++.++..+.....+++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046061 429 VNLATYYIIGLPIGCILGFK----TILGVAGIWWGMIIGVLLQTTTLIILTARTN 479 (505)
Q Consensus 429 ~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 479 (505)
.+.++. ++++++.+++... +.+|+.|+++++.+++.+..++..++.+|++
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999987 7899999888642 4689999999999999998888777766543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=6.5e-17 Score=165.76 Aligned_cols=203 Identities=14% Similarity=0.094 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|++++.+.|..++++...+...+|+.+.+++|++++++++.+..+.++....+..+++++..|.++++++++|+++.+
T Consensus 221 ~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~ 300 (502)
T TIGR01695 221 GLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELR 300 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999999998666899999999999999885434456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQ----SDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLA 204 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (505)
+..+++.......+++.++ +..+++++..++.+ +++..+.+..++++.+++.++..+.....+.+++.||++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 380 (502)
T TIGR01695 301 DLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPF 380 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCH
Confidence 9999999999999999988 88999999988754 456778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 205 YMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 205 ~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
+.++...++|++++++++. .+|..|+++|+.+++.+..++..++.+|+
T Consensus 381 ~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 381 INSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988874 47999999999999999998887777654
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=2.3e-16 Score=148.21 Aligned_cols=270 Identities=17% Similarity=0.139 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 046061 55 WLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQ 133 (505)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 133 (505)
.|.+.....+++...+.+++...+++| +|++++|.++...++.+++......|++++..+..++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567778889999999999999999999 69999999999999999766666899999998888876432 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 046061 134 RAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLL 213 (505)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 213 (505)
.......+.+++........ ...+.++. . ..+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444333322222 23333322 1 1122222222256777888899999999999999999999988
Q ss_pred HHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHHHHHHH
Q 046061 214 HILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYN 293 (505)
Q Consensus 214 ~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 293 (505)
..++...++.. +.+..+..++..++..+..++...+.+++.+ .+.+..+++..|++++++.|..+.++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666654 4458889999999999888888877776522 11222235788999999999999999999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 294 QGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNE 341 (505)
Q Consensus 294 ~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~ 341 (505)
..|..+++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998 599999999999999999999999999999999975
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.77 E-value=2.1e-16 Score=153.68 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 046061 281 ASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNAT 360 (505)
Q Consensus 281 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 360 (505)
|.++.++...+...+++.++++++ ++++++|+++.++..+...+..+++++..|.++++.|++|+++.++..+.+..+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999986 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhh
Q 046061 361 GILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLP 440 (505)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 440 (505)
...++++.+++++++++++.++++.|++..+.+..+++++++..++.+++....+++++.||++...+.+.+.. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888888999999999999999999999999999999999999999887 77888
Q ss_pred HHHHHHH-hcC-CCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 441 IGCILGF-KTI-LGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 441 l~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
+.+++.. ..+ +|+.|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 555 779999999999999988887766665
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=4e-15 Score=148.74 Aligned_cols=203 Identities=16% Similarity=0.111 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|++++...|.+++.....+..++|+.+.+++++..+++++++..+.++....+..++++...|.+|+...++|.++.+
T Consensus 196 ~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~ 275 (451)
T PF03023_consen 196 NLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFR 275 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 68999999999999999999999999999999999999999999999996655677789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIG----QSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLA 204 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (505)
+.+++++....++.++.++ +..+++++...+. .+.+-.+.....++++++++++..+...+...+.+.+|+|.++
T Consensus 276 ~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~ 355 (451)
T PF03023_consen 276 KTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPV 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHH
Confidence 9999999999999999998 9999999998773 3556677788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 205 YMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 205 ~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
..++.+.++|++++.++. ..+|..|.++|+.++.++..++...+++|+
T Consensus 356 ~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 356 RISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887 458999999999999999999988888776
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=4.5e-18 Score=146.38 Aligned_cols=162 Identities=23% Similarity=0.368 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 046061 281 ASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNAT 360 (505)
Q Consensus 281 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 360 (505)
|..++++.+.+.+.+++.++++++ ++++++++++.++.++...+..+++++..+.+++++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhh
Q 046061 361 GILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLP 440 (505)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 440 (505)
...++++.+++..++++++..+|++|+++.+.+..++++..+..++..+.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 046061 441 IGCI 444 (505)
Q Consensus 441 l~~~ 444 (505)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.73 E-value=4.7e-14 Score=138.79 Aligned_cols=203 Identities=11% Similarity=0.071 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|++.+...|..++...+++..++|+.+.+.+.+...+.+.++..+.++..-.+..++++...|..|++..++|.++.+
T Consensus 230 ~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~ 309 (518)
T COG0728 230 GLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFL 309 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 78999999999999999999999999999999999999999999999996555678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIG----QSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLA 204 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (505)
+..+.++.+..+++++..+ +..+++|+.+.+. .+++........+..+++++++..+..++...+++.+++|.|+
T Consensus 310 ~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~ 389 (518)
T COG0728 310 KLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPM 389 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcCh
Confidence 9999999999999999999 9999999998763 3455566777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 205 YMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 205 ~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
.+.+++.++|++++..+. +.+|..|.++++.++.++.+.+.++.++|+
T Consensus 390 ~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 390 KIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999996666 457889999999999999998888888776
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=1.5e-17 Score=143.08 Aligned_cols=160 Identities=23% Similarity=0.362 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 046061 60 ASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLH 139 (505)
Q Consensus 60 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (505)
|.+++++...+...+|+.+++|+|++++++++++.++..+ ...+..|+++|..+.+||++|++|++++++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999994 466899999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH-HHHHHH
Q 046061 140 LGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVF-LLHILL 217 (505)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~l 217 (505)
.+.+++..+ ...+.+++..+++.++++.+.+..|+++..+..++..+.....+++++.||++.+++.++... ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 999999999 799999999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHH
Q 046061 218 TWI 220 (505)
Q Consensus 218 ~~~ 220 (505)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=4.8e-15 Score=151.43 Aligned_cols=200 Identities=19% Similarity=0.145 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGA------L---ELAGA-SIASVGIQGLAYGIMLGMASAVQTVCGQ 118 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~------~---~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~~~s~ 118 (505)
..|++++.++|.+++++...+...+|+.++++ +++ + .+|.+ +.+.++..+ ...+..+++++..|.+++
T Consensus 223 ~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~~s~ 301 (488)
T TIGR02900 223 LLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPDISE 301 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999998 332 1 22333 344556653 345678899999999999
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Q 046061 119 AYGAKKYSAMGLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQ 197 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 197 (505)
+.+++|+++.++..++...+..+.+++.++ +..++++++.++..++ .+.+++++.++..++..+.....+.+++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 377 (488)
T TIGR02900 302 AMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGL 377 (488)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888 8889999998876443 35678999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 198 NIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 198 ~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
||++..++.++...++|++++++++..+++|+.|+++++.+++.+..++..++.+|.
T Consensus 378 g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 378 GKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887754568999999999999999998887777643
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=4.3e-13 Score=137.08 Aligned_cols=199 Identities=15% Similarity=0.043 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAM 128 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 128 (505)
..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...+++...|.+++. ++|+++.
T Consensus 205 ~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~ 282 (492)
T PRK10459 205 SVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKL 282 (492)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHH
Confidence 67999999999999999999999999999999 59999999999999988544444455677788888875 5788889
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 046061 129 GLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMS 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (505)
++.+.+.......+++++.+ +..++++++.++.+++ +..+.+.++++++...+..........+++.||++.....+
T Consensus 283 ~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 360 (492)
T PRK10459 283 RVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWN 360 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHH
Confidence 99999999999999999888 8889999998876554 45678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 208 VGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
++..+++++..+.+. ..+|+.|+++++.+++.+...+..++..|+
T Consensus 361 ~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 361 VFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877665555 357999999999999999888777777443
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=6.8e-13 Score=122.95 Aligned_cols=247 Identities=16% Similarity=0.146 Sum_probs=179.9
Q ss_pred HHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 046061 70 MLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTF 148 (505)
Q Consensus 70 ~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (505)
..+++-.++++| +|++++|.++...++..+.......|+++...+ ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 699999999999999996656557777776544 22455666666666666554444444333
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 046061 149 LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYG 228 (505)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g 228 (505)
+ ...+..+++ +++ ...++....+..+........++.+++++|.+.....++...+....+...+.. .+.+
T Consensus 77 ~---~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFFG-DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHhC-Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 222222333 332 223455666777888888999999999999999999999998888555444444 3448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 046061 229 LLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTI 308 (505)
Q Consensus 229 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (505)
..+..++..++..+..++.....+++ .+ ..+ +.+..| .++.+.|..+.++........+..+++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK--LR--LSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cC--CCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 88888898888888777665533321 11 111 122234 799999999999999999999999999965 489
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 046061 309 SLDSISICLNYLNWDM-QFMLGLSTAASIRVSN 340 (505)
Q Consensus 309 ~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~~s~ 340 (505)
++|.|+++.++..... .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 9999999999999886
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.62 E-value=1.9e-13 Score=136.36 Aligned_cols=197 Identities=10% Similarity=-0.046 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAM 128 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 128 (505)
..|++++++.|.+++++...+...+|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+++.
T Consensus 213 ~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~ 289 (416)
T PRK15099 213 LAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDI 289 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHH
Confidence 68999999999999999999999999999985 89999999999999977444567889999999999985 567888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 046061 129 GLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMS 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (505)
++..+.........+++..+ +.+++++++.++.+++ ++.+.++.++++++..+...+..+...+.+.++.+......
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 367 (416)
T PRK15099 290 TREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAE 367 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999998888888887 7799999999887655 33467788888888888777777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 046061 208 VGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVL 253 (505)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 253 (505)
+...+++++++++++. .+|..|+++++.+++++...+......+
T Consensus 368 ~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 368 VSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999884 4899999999999999999877765553
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.54 E-value=3.2e-12 Score=130.28 Aligned_cols=184 Identities=17% Similarity=0.227 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAM 128 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 128 (505)
..|++++.++|.....+...+.+.+|+.++++ +|++++|.|+.+..+.. ....+...++....|.+++...++|.++.
T Consensus 211 ~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~~~~ 289 (480)
T COG2244 211 LLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDRKAL 289 (480)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 89999999999999999999999999999999 69999999998888887 45667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 046061 129 GLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMS 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (505)
++..++++......+++..+ +..+++++...+.+++. ..+...+.+.++..++..+.......+++.|+.+..+...
T Consensus 290 ~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 367 (480)
T COG2244 290 KKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLIS 367 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHH
Confidence 99999999999999999999 89999999987765542 2267788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHH
Q 046061 208 VGVFLLHILLTWIVVFVLDYGLLGAALTLGLS 239 (505)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~ 239 (505)
.++.++|++++++++ ..+|..|++.++ .+
T Consensus 368 ~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 368 LISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999 458999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.42 E-value=1.3e-09 Score=109.99 Aligned_cols=420 Identities=13% Similarity=0.038 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 046061 56 LLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQ-GLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQ 133 (505)
Q Consensus 56 ~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~-~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 133 (505)
+.+--+++.|++..+.+++-+.++-| ++++.+|..++-..+.. ......-.++-.+.++.-.+...+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44556677888888888877776666 79999999866555554 22233345666554333222211112223333322
Q ss_pred HHHHHHHHHHHHHHHHHH--hhHH----HHHHcCCC-HH---HHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHcCC
Q 046061 134 RAIVLHLGAAVILTFLYW--YSSP----ILRAIGQS-DT---IAEQGQVFARGLIPQLYAFAI----SCPMQRFLQAQNI 199 (505)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~~ 199 (505)
....+..+.+++...+.+ ...+ ...+...+ ++ ..+.....+.+...+...-.+ ....+..+.-..|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 323333333332211111 0100 01111111 11 111122223333333333333 3334555555556
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc-Cccc-----ch-hHHHHHHHHHHHHHHHHH--HHHhccc---cccccCCCCH-
Q 046061 200 VNPLAYMSVGVFLLHILLTWIVVFVL-DYGL-----LG-AALTLGLSWWLLVIINGL--YIVLSPS---CKDTWTGLSI- 266 (505)
Q Consensus 200 ~~~~~~~~i~~~~~~i~l~~~li~~~-~~g~-----~g-~~~a~~i~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~- 266 (505)
.+.-........+++..+........ +++. .+ +.++...+++...+.... +...... .....++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 66666666666666555444332210 1111 11 234444455444432221 1111111 1111111111
Q ss_pred --HhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 046061 267 --KAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGL--LTNPTISLDSISICLNYLNWDM-QFMLGLSTAASIRVSNE 341 (505)
Q Consensus 267 --~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~~s~~ 341 (505)
.....-+++++........++.-.+..+.|..++.. +.+ .++-|.|++++++-+++. .+...+........++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 111235789999999999999999999999999998 775 889999999999988765 66677888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046061 342 LGAAHP---------RVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPI 412 (505)
Q Consensus 342 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 412 (505)
..+++. ++..+.....++....+++.+......+++.+..++.++......+...+++++.+.++.+++++
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765433 34556677777777777777777777777888888766543333468899999999999999999
Q ss_pred HHHHHhhcCcchHHHHHH---HHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 046061 413 LSGVAIGSGWQAVVAYVN---LATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478 (505)
Q Consensus 413 ~~~~l~~~g~~~~~~~~~---~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 478 (505)
.....++...++.....+ .+.. ++.+..++++... ++|..|..+|.++.+.++.+....++++.
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987776653322 2222 5667778888775 79999999999999999999988888764
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=5.2e-08 Score=91.82 Aligned_cols=415 Identities=14% Similarity=0.040 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC---cc
Q 046061 51 SRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKK---YS 126 (505)
Q Consensus 51 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~---~~ 126 (505)
.....+.+.-.+..|++..+.++.-..++-| ++++.+|..++-..+.+- . ..-++.-..+......|..+ .+
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s--T--iLFlsREair~A~l~~gs~~~d~~t 82 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS--T--ILFLSREAIRLAELRIGSEPADTWT 82 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH--H--HHHhhHHHHHHHhccCCCCCCccHH
Confidence 3445555666667777777776665555555 799999999887777662 1 11122222233344444333 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHH
Q 046061 127 AMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDT-IAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAY 205 (505)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (505)
+..+..+.+.-+.+..+++.. .+--.+.... ++. ..+.-..-+.+...+...-.+...+.-..|..-+.+.-..
T Consensus 83 e~~n~~wlS~~L~~~i~~~~i---~~wl~~~~s~--d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 83 EFINLLWLSVPLQTAINVACI---YFWLGFLSSS--DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HHHHhhhhhhhHHHHHHHHHH---HHHHHHhhcc--chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 444444444444444333332 2221221111 110 0111111122222222222233333344444444555555
Q ss_pred HHHHHHHHH-HHHHHHHHHhc-CcccchhHHHHHHHHHHHHHHHH-HHHHhccccccc---------cCCCCHH--hhhC
Q 046061 206 MSVGVFLLH-ILLTWIVVFVL-DYGLLGAALTLGLSWWLLVIING-LYIVLSPSCKDT---------WTGLSIK--AFRG 271 (505)
Q Consensus 206 ~~i~~~~~~-i~l~~~li~~~-~~g~~g~~~a~~i~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~--~~~~ 271 (505)
..-+..++. ++...+++.+. ++++.--++|.......-.+... .|+..++..+.. .++.... ....
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 555555555 33333333332 34444445555544444333222 233333211110 1111100 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChH
Q 046061 272 IWPYFKLTVASAVMLCLEIWYNQGLVLISGLL--TNPTISLDSISICLNYLNWDM-QFMLGLSTAASIRVSNELGAAHPR 348 (505)
Q Consensus 272 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~~s~~~g~~~~~ 348 (505)
-++..+.-....-..+.-++....+..+++.. .+ -.+-|.|.++++.-+++. ++...+-...-...++...+++.|
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls-~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLS-FGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCC-cchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34667777777777777888777777776632 22 346778999988876655 666777777777777777766666
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchH
Q 046061 349 VAKFS---VIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAV 425 (505)
Q Consensus 349 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 425 (505)
+.|+. ....++....+++.+......+++.+..+++++......+...+++++.+.++.+++.+..+...+.+..+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 65554 455566666666666565666677888887664432234568899999999999999999999888876655
Q ss_pred HHH---HHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 046061 426 VAY---VNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478 (505)
Q Consensus 426 ~~~---~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 478 (505)
... ..++.. +..+.++|++... +|..|...|.++.+.++-+....++++.
T Consensus 397 i~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 422 233333 5678888999887 8899999999999999888777666653
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.28 E-value=3.8e-10 Score=112.19 Aligned_cols=206 Identities=13% Similarity=0.169 Sum_probs=186.7
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 046061 269 FRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNW-DMQFMLGLSTAASIRVSNELGAAHP 347 (505)
Q Consensus 269 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~~s~~~g~~~~ 347 (505)
..+.|++.+++.|..+....+.....++..+.|+++ +.++++.+++++..+. -+.+..++..+..|..++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 477899999999999999999999999999999998 4599999999888775 5577889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHH
Q 046061 348 RVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVA 427 (505)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 427 (505)
+......+++........+|.+... .+.+++...+..|+++...+..+.++.....+-......+...+|+.+......
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999888888888876654 456999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 046061 428 YVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478 (505)
Q Consensus 428 ~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 478 (505)
++..... ++++++++++...+++|..|+..+..+++.+.......+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999987 9999999999999999999999999999999888777766653
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.91 E-value=7.9e-06 Score=74.19 Aligned_cols=259 Identities=14% Similarity=-0.007 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGH-L-GA-LELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYS 126 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-l-g~-~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 126 (505)
...++.++-+|+.++.....+...+-+.-++| - .+ +.+++|+++.++.-++ ......+-+.... +++++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchhh
Confidence 67899999999999999999988888888887 3 22 4599999999888743 3344444444333 3333333
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHH-hhHHHH-HHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchH
Q 046061 127 AMGLICQRAIVLHLGAAVI-LTFLYW-YSSPIL-RAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPL 203 (505)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (505)
+.+..... .....+...+ ..+.+- +...++ ...+.++++.+.+...+.++.+...+.++....++++-=++++...
T Consensus 83 rr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 22222222 2222222222 222222 222333 4568999999999999999999999999999999998877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccc-chhH---HHHHHHHHHHH-HH-HHHHHHhccccccccCCCCHHhhhCHHHHHH
Q 046061 204 AYMSVGVFLLHILLTWIVVFVLDYGL-LGAA---LTLGLSWWLLV-II-NGLYIVLSPSCKDTWTGLSIKAFRGIWPYFK 277 (505)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~g~-~g~~---~a~~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (505)
...++......+++..+++.. +... ..+. ++...+..+-+ .+ ..+|..-+ +......+....+...++++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~-~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIH-DIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCcccCCChhHHHHHH
Confidence 666655555555544444432 1111 1111 22222222211 11 12221212 1111122222233467889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchh----hHHHHHHHHH
Q 046061 278 LTVASAVMLCLEIWYNQGLVLISGLLTNPT----ISLDSISICL 317 (505)
Q Consensus 278 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~a~~~i~~ 317 (505)
+.+|.+........+..+.+.++++..+|. ++++...+.+
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~y 283 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATY 283 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhcccc
Confidence 999999999999999999999999954444 4555544433
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.48 E-value=1.7e-05 Score=66.44 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=73.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 046061 174 ARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVL 253 (505)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 253 (505)
+++.+++.++..+.....+.+++.||++..+..++.+.++|++++++++ +++|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999997 56899999999999999999888888876
Q ss_pred c
Q 046061 254 S 254 (505)
Q Consensus 254 ~ 254 (505)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.47 E-value=3.2e-05 Score=78.55 Aligned_cols=203 Identities=15% Similarity=0.104 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc--
Q 046061 51 SRLLWLLSWASIVVSIFNYMLSFVTLMFTGH--L-GALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKY-- 125 (505)
Q Consensus 51 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~--l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~-- 125 (505)
-++..+++...+.+.+...+.+--|++++.. + +.++-|.|+++.++-++..-.++.-+..+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3688889999999999999999999999999 6 8899999999999999776767777888888888887765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Q 046061 126 -------SAMGLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQ 197 (505)
Q Consensus 126 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 197 (505)
++..+.+...+.+...+|+++.. ....++.++.+++++.-..+.+...+++.+..+|+.+++.+.-++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 34566777777888888877777 7778888888776544333445677899999999999999999999988
Q ss_pred CCcchHH---HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 198 NIVNPLA---YMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 198 ~~~~~~~---~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
...+... .......++.+..+++++.. ++|..|..+|+++...+-.+.+..++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766444 44445556666777888765 78999999999999999999888888754
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.35 E-value=0.00018 Score=67.20 Aligned_cols=188 Identities=18% Similarity=0.156 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 046061 276 FKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQF-MLGLSTAASIRVSNELGAAHPRVAKFSV 354 (505)
Q Consensus 276 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~~s~~~g~~~~~~~~~~~ 354 (505)
.|.+......+....+...+...++.+.. |+++.|.|+....+.++...+ ..|+.++..-..++..++ .++.++..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 34555566667777777777777777777 499999999999999888766 678888888777776543 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHH
Q 046061 355 IVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATY 434 (505)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 434 (505)
...........+.......... .+.. ++. ...+........++.........++++.++.+.....+....
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFGN-PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332222222222222 3333 321 122222222222577788888999999999999888888876
Q ss_pred HHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 435 YIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 435 ~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
+..+.+...+... ..+..+...+..++..+..++..+..+|
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332 2348889999999998887777777765
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.14 E-value=0.0028 Score=58.09 Aligned_cols=160 Identities=13% Similarity=0.154 Sum_probs=109.8
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046061 268 AFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGL-LTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAH 346 (505)
Q Consensus 268 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~ 346 (505)
.....++++++-+|..+++....+.-++.+.-+++ ..+..+.+|+|+++..+.-++..+...+-++....+. ++
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SK 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----ch
Confidence 44678899999999999999999999999988876 3333467999999999999999999888887666653 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh-hhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcch
Q 046061 347 PRVAKFSVIVVNATGILISIVFCA-IVLIFRV-GLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQA 424 (505)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 424 (505)
.+ -++........+........+ ..-.++. .+.+++.-++++.+.+...+.++....+++++.....+++.=.+++.
T Consensus 81 rs-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RS-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22 122222222222221111111 1112222 33445566888899999999999999999999999999877555655
Q ss_pred HHHHHHHHH
Q 046061 425 VVAYVNLAT 433 (505)
Q Consensus 425 ~~~~~~~~~ 433 (505)
.....++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 554444443
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.10 E-value=2.8e-05 Score=65.19 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 046061 397 TPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTA 476 (505)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 476 (505)
+++++++.++.++....+.++++.||+|..+..+.++. ++++++++++.+ ++|..|+++++.+++.+..++..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999987 999999999955 499999999999999999999888888
Q ss_pred cC
Q 046061 477 RT 478 (505)
Q Consensus 477 ~~ 478 (505)
|+
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.09 E-value=0.0093 Score=55.79 Aligned_cols=341 Identities=11% Similarity=0.009 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 046061 100 LAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIP 179 (505)
Q Consensus 100 ~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (505)
+.+.+..|+....++.+|...=++|.++...-+.....+....+..+.. ++-....+.+. .|=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si-----~yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSI-----VYKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhH-----HHHHHHHH
Confidence 3445677888888899999887777776655554444443333333332 11111222221 12233455
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 046061 180 QLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKD 259 (505)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 259 (505)
.....+..-+...++.+.++.+.....-.++.++.+++..++-. .+..|..++..++..+.......+..+.-+.+
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~- 215 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS- 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-
Confidence 56666777777889999999999999988999888888776664 48899999999999988877777766541111
Q ss_pred ccCCCCHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHHHHHHHHH-----H
Q 046061 260 TWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLD------SISICLNYLNWDMQFM-----L 328 (505)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a------~~~i~~~i~~~~~~~~-----~ 328 (505)
+...++.. +. .+--...++......++-.+++.+.=.-.+|.+-.+ -|.+..=...+...|. .
T Consensus 216 ~~i~FdFL--~~----~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 216 RRIGFDFL--LY----RRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred cccceehh--hh----hhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 11111111 11 111112344555666666666655433322221111 1222222222222222 1
Q ss_pred HHHHHHHHHHHHHh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHH
Q 046061 329 GLSTAASIRVSNEL----GA-------AHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLT 397 (505)
Q Consensus 329 ~~~~a~~~~~s~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 397 (505)
.+.+...+.--+.+ +. ++.++.....++.+.-..-+-..+++.++++++.+...+.-++ ...+..
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHH
Confidence 22333333322222 11 2233334445555555566777888899999999999987554 345555
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHh-cCCCchHHHHHHHHHHHHH
Q 046061 398 PLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFK-TILGVAGIWWGMIIGVLLQ 467 (505)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-~~~g~~G~~~a~~~~~~~~ 467 (505)
.+-..+.........+-++.--..+-+.....+..-. ..|-.+.++.... |++--.|...|..+.-.++
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~ 435 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLYVLVA 435 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHHHHHH
Confidence 6666666555555555566666666676655555543 5666666655432 3333445555555544443
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.96 E-value=0.004 Score=57.24 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 293 NQGLVLISGLLTNPTISLDSISICLNYLNWDMQFM-LGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAI 371 (505)
Q Consensus 293 ~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~-~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (505)
+.....++++.. |+++.|.|+....+..+...+. .++.+...- ..++++++.++.............+...++
T Consensus 4 ~f~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 4 NFLFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667766 4899999999999988888763 444443322 233556666666666665544444443333
Q ss_pred HHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 046061 372 VLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTIL 451 (505)
Q Consensus 372 ~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~ 451 (505)
.. .+...+ ++++ ...++....+..++..........+++.+|.+.......... +..+.+...+. ..+.
T Consensus 78 ~~----~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 146 (251)
T PF13440_consen 78 AI----LIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGL 146 (251)
T ss_pred HH----HHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHh
Confidence 22 222233 3332 334555666777888889999999999999999888888876 33333333332 2224
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHh
Q 046061 452 GVAGIWWGMIIGVLLQTTTLIILTA 476 (505)
Q Consensus 452 g~~G~~~a~~~~~~~~~~~~~~~~~ 476 (505)
+..+..++..++.++..+......+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 147 NLWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888999999998887766555444
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.0058 Score=58.63 Aligned_cols=201 Identities=14% Similarity=0.048 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch-
Q 046061 52 RLLWLLSWASIVVSIFNYMLSFVTLMFTGH---LGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSA- 127 (505)
Q Consensus 52 ~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~- 127 (505)
++..+...-..-+.++..+.+-=|.+++.- ++-++-|.|.++.+.-+++.-.++.-+....-.+.+|...++++|+
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 345555556667777788888888888883 3556777888887766655555666677777777777776655554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcch--
Q 046061 128 --MGLICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNP-- 202 (505)
Q Consensus 128 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 202 (505)
+.+++...+.+...+|+.++. ....++..+.+.++++-....+...+++.+..+|+.+++.+..++..+....+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 455566667777777766666 677777778887766544444557789999999999999999999988775543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 203 -LAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 203 -~~~~~i~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
......+..+..++++++++-. +|..|..+|+++...+-.+....++++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566677888888865 6779999999998888887776666654
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=80.82 E-value=56 Score=31.57 Aligned_cols=136 Identities=16% Similarity=0.093 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 046061 325 QFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISV 404 (505)
Q Consensus 325 ~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 404 (505)
.+..+++-...-.+|+..=+++.+++...+.-++.+....+..++..+++. +++ ....... ..+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~---------~~~--~si~yk~--l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV---------NNQ--YSIVYKI--LACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh---------cCc--hhHHHHH--HHHHHH
Confidence 344556666666677777777777777777777776666666655422221 222 1112222 233444
Q ss_pred HHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 046061 405 FLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTAR 477 (505)
Q Consensus 405 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 477 (505)
+..+..-+....+.+.++.+.....-+++. +..+.+++++.. .+..|..++..++..+..+....+..+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455555667778889999888766555554 677777776654 588999999999988877766655544
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=71.42 E-value=85 Score=28.94 Aligned_cols=173 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q 046061 307 TISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSD 386 (505)
Q Consensus 307 ~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 386 (505)
+.+++.---..-+.+.+..+...++.......-+...++|.++.++..........+...+..++...++.+.++-+.+.
T Consensus 93 e~AialAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~ 172 (265)
T TIGR00822 93 GTGIALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKA 172 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046061 387 SEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLL 466 (505)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~ 466 (505)
+-.....--.+..+++-+.|-.-....+.-=.. .....+.+++..+.+++..++++ +
T Consensus 173 ---------------iP~~v~~Gl~vaggmLPAvGfAmLl~~m~~k~~-~~ff~lGF~laayl~l~~l~iAi-------i 229 (265)
T TIGR00822 173 ---------------IPEVVTHGLQIAGGIIVVVGYAMVLRMMFKAYL-MPFFYLGFLFAAYTDFSLLAFGA-------V 229 (265)
T ss_pred ---------------CHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHhCCcHHHHHH-------H
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcchhhhhh
Q 046061 467 QTTTLIILTARTNWNTEVEKAADRLRKSSNEERFET 502 (505)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (505)
...+.+.++...+..++....-....++..+||-|.
T Consensus 230 g~~~A~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (265)
T TIGR00822 230 GGAGALLYIQLNPKSHRAQAAPSPAASKNELDDYDD 265 (265)
T ss_pred HHHHHHHHHHhccccccccCCCCCCCCccccccccC
No 48
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=69.15 E-value=6.5 Score=28.44 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046061 466 LQTTTLIILTARTNWNTEVEKAADRLR 492 (505)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
+.+.+.+..++|.+.++++.+..+|++
T Consensus 21 vvW~iv~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 21 VVWTIVYIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp HHHHHH------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444555666666666666665555
No 49
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=58.77 E-value=1.5e+02 Score=27.38 Aligned_cols=35 Identities=6% Similarity=-0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 046061 322 WDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIV 356 (505)
Q Consensus 322 ~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~ 356 (505)
....+...++....+..-+...++|.++.++....
T Consensus 109 ~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 109 YVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 34455666677777777777888888888765443
No 50
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=55.37 E-value=1.9e+02 Score=27.54 Aligned_cols=199 Identities=11% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHH
Q 046061 58 SWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIV 137 (505)
Q Consensus 58 ~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (505)
..-.....+++.+.--.-..+.-+..+.++....++.++.-++......|..+ +.+.+. .+.+|-..+.+...+-
T Consensus 143 lv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lT---R~i~~k--~kg~~~~~~~f~p~is 217 (342)
T COG0798 143 LVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLT---RYILIK--KKGREWYESRFLPKIS 217 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--hccchHHHHHHHhhcC
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Q 046061 138 LHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILL 217 (505)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l 217 (505)
-..+.++..++...|+.+--...+.+.++.-.+.+++.-.....+. ....+..+.---+-..+...+..++-.-+.+
T Consensus 218 pi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i---~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAi 294 (342)
T COG0798 218 PIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFI---SYFIAKALGLPYEDAAALVFTGASNNFELAI 294 (342)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCChhhhhceeeeeccccHHHHH
Q ss_pred HHHHHHhcCcc-cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHH
Q 046061 218 TWIVVFVLDYG-LLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIK 267 (505)
Q Consensus 218 ~~~li~~~~~g-~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (505)
....... | -.|++++++++.++...+++.+.+--++.++.+.+.++.
T Consensus 295 AvAi~lf---G~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~~ 342 (342)
T COG0798 295 AVAIALF---GLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNERK 342 (342)
T ss_pred HHHHHhc---CccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCCC
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=53.78 E-value=2.3e+02 Score=27.91 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046061 346 HPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSK 381 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 381 (505)
+.++.++..+++...+........+++....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999998888888877777766
No 52
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=51.00 E-value=96 Score=22.69 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 046061 330 LSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIV 367 (505)
Q Consensus 330 ~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 367 (505)
++......+.+.+.+||.+++++.-+++.+++..-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34445566778888999999999999988887654444
No 53
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.44 E-value=3.6e+02 Score=26.03 Aligned_cols=28 Identities=7% Similarity=-0.135 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046061 348 RVAKFSVIVVNATGILISIVFCAIVLIF 375 (505)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (505)
++..+..++-++......+|......+.
T Consensus 119 ~~~~~~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 119 KERVQRLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455666666666655544443
No 54
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=38.40 E-value=78 Score=29.98 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 45 RLLGWESRLLWLLSWASIVVSIFNYMLS 72 (505)
Q Consensus 45 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~ 72 (505)
+.+.+..|.+++..+|.....+.....+
T Consensus 240 ~e~~~~i~pll~~MvPL~~VY~~EY~IN 267 (409)
T KOG3880|consen 240 KETLKRIKPLLKYMVPLALVYFAEYFIN 267 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333477888889999988777765543
No 55
>PRK03612 spermidine synthase; Provisional
Probab=36.51 E-value=5e+02 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cChhHHHH
Q 046061 60 ASIVVSIFNYMLSFVTLMFTGH-LGALELAG 89 (505)
Q Consensus 60 p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~ 89 (505)
-.+++.+....+..+-.-+++. +|.+.++.
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~ 52 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQF 52 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 3445566666666666666666 46655444
No 56
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.82 E-value=1.2e+02 Score=28.90 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-------cCCCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 428 YVNLATYYIIGLPIGCILGFK-------TILGVAGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 428 ~~~~~~~~~~~i~l~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
..++++ ++.+|+.++.+.+ |..+..-.++..++.+++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555 3556776665543 11111123444444455556667778888877
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=32.76 E-value=1.3e+02 Score=28.53 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHh-------cCCCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 425 VVAYVNLATYYIIGLPIGCILGFK-------TILGVAGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 425 ~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
..-..++++ ++.+|..++-+.+ |.....-.++.....+++.++..+++++|++|
T Consensus 257 ~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 257 IMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333455555 4556666665432 11111123444444455556667788888887
No 58
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=31.58 E-value=6e+02 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHH
Q 046061 54 LWLLSWASIVVSIFNYMLSFVTLMFTGHL--GALELAGASIASVGIQ 98 (505)
Q Consensus 54 i~~~~~p~~~~~~~~~~~~~~~~~~i~~l--g~~~~~~~~~~~~i~~ 98 (505)
..++..-..++++...+....-..++..+ ++..+|.+..+..+..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~ 58 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPI 58 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33344556677777888877777777775 4556666666665555
No 59
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=29.34 E-value=3.1e+02 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=18.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 046061 228 GLLGAALTLGLSWWLLVIINGLYIVLS 254 (505)
Q Consensus 228 g~~g~~~a~~i~~~~~~~~~~~~~~~~ 254 (505)
++.|...++.+++.+.+++...|.++.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 334666777888888777766666543
No 60
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.94 E-value=2.5e+02 Score=26.76 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhcCCCc--------hHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 424 AVVAYVNLATYYIIGLPIGCILGFKTILGV--------AGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 424 ~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~--------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
...-..++++ ++.+|..++.+.+ +++. .-.++.....+++.++..+++++|++|
T Consensus 254 ~~mk~lTv~s--~if~pptliagiy-GMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 254 RIIKIFSVVS--VVFLPPTLVASSY-GMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhc-ccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3333455555 4555665655432 1111 112333344445556667778888887
No 61
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=23.99 E-value=7.5e+02 Score=24.86 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 308 ISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIV 372 (505)
Q Consensus 308 ~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (505)
.-++.|+...++ ......|.+++...+.++.+.-+.....-+..+..+..+...+
T Consensus 38 l~~siygl~~~~----------~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l 92 (432)
T PF06963_consen 38 LPVSIYGLVRSL----------SAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLL 92 (432)
T ss_pred HHHHHHHHHHHH----------HHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666554443 3445678889999877766665555555555555544443333
No 62
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.56 E-value=6.5e+02 Score=24.00 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-------cCCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 428 YVNLATYYIIGLPIGCILGFK-------TILGV-AGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 428 ~~~~~~~~~~~i~l~~~l~~~-------~~~g~-~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
..++++ ++.+|..++.+.+ |..+. .|.|++.. .+++.+++.+++++|++|
T Consensus 264 ~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~-~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 264 ILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALI-LMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHH-HHHHHHHHHHHHHHhcCc
Confidence 345554 4556666665543 11111 14444444 444556667778888887
No 63
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.69 E-value=3.4e+02 Score=24.18 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCC
Q 046061 124 KYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQS 163 (505)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (505)
+++.....+..++...+++-.+++++..+..+++.+++.+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 3444444555555444444444444666667777777643
No 64
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.66 E-value=1.2e+03 Score=26.82 Aligned_cols=28 Identities=4% Similarity=-0.070 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046061 346 HPRVAKFSVIVVNATGILISIVFCAIVLI 374 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (505)
..+.+++..+ -++....+.+|+.....+
T Consensus 591 ~~~~v~~~~~-~~~~~~~~~~pl~~~~~~ 618 (1109)
T PRK10929 591 PRERVARAMR-YYLLSIGLIVPLIMALIT 618 (1109)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3445544444 455555555565544333
No 65
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.18 E-value=6.9e+02 Score=24.31 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046061 355 IVVNATGILISIVFCAIVLI 374 (505)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~ 374 (505)
+...++.+-+.+|+.+.--+
T Consensus 31 ~~ls~lv~~~~lP~liF~~i 50 (385)
T PF03547_consen 31 KGLSKLVFNVFLPALIFSSI 50 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555565444333
No 66
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=20.97 E-value=6.7e+02 Score=23.17 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhcc
Q 046061 321 NWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNAT-GILISIVFCAIVLIFRVGLSKLF 383 (505)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~ 383 (505)
+.+..+...+........=++..++|.+.+++....+... .+...+|..+..++-.+.+-.++
T Consensus 107 q~l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l 170 (265)
T COG3715 107 QFLTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLL 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445566677777777777777889999998888877744 44455555555554455554444
No 67
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=20.88 E-value=8.8e+02 Score=24.52 Aligned_cols=51 Identities=6% Similarity=-0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHH
Q 046061 315 ICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRV----AKFSVIVVNATGILIS 365 (505)
Q Consensus 315 i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~----~~~~~~~~~~~~~~~~ 365 (505)
....++.+++.....+.-.+.|..-..+.+++.+. .++..+..+.+...++
T Consensus 76 ~~~~~W~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~~ 130 (471)
T PF04791_consen 76 LMEVLWYIIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIFA 130 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHH
Confidence 34445777777777788889999988888877654 3444444444444333
No 68
>PRK00523 hypothetical protein; Provisional
Probab=20.71 E-value=2.1e+02 Score=20.34 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 046061 454 AGIWWGMIIGVLLQTTTLIILTARTNWNTEVEK 486 (505)
Q Consensus 454 ~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (505)
.|+|+...+-.++.+++.-+++.|+..++..++
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555445555555555555555554443
Done!