Query 046061
Match_columns 505
No_of_seqs 245 out of 2187
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 4.9E-48 1.7E-52 390.5 39.7 428 50-480 10-448 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.1E-18 3.9E-23 175.4 20.0 203 50-253 236-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 81.2 38 0.0013 32.2 36.3 22 450-471 409-430 (451)
4 3o7q_A L-fucose-proton symport 39.2 2.4E+02 0.0082 26.2 34.7 40 55-94 29-70 (438)
5 4aps_A DI-OR tripeptide H+ sym 38.6 2.7E+02 0.0091 26.5 28.1 20 450-469 447-466 (491)
6 2k1k_A Ephrin type-A receptor 24.6 1E+02 0.0035 17.9 3.5 23 454-476 14-36 (38)
7 2knc_B Integrin beta-3; transm 18.7 2.4E+02 0.0083 19.5 5.2 24 452-475 9-32 (79)
8 2jwa_A Receptor tyrosine-prote 17.3 1.6E+02 0.0055 17.7 3.3 7 248-254 32-38 (44)
9 2iub_A CORA, divalent cation t 15.3 70 0.0024 29.8 2.2 62 417-480 294-362 (363)
10 1vpu_A VPU protein, VPU(39-81) 12.8 53 0.0018 19.9 0.4 24 479-502 2-25 (45)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=4.9e-48 Score=390.46 Aligned_cols=428 Identities=21% Similarity=0.349 Sum_probs=394.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|++++.++|.+++++...+++.+|+.+++|+|++++|+++++.++..+ ...+..|++++..+.+++++|++|+++.+
T Consensus 10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~~~~~ 88 (460)
T 3mkt_A 10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQHKIP 88 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSSTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence 78999999999999999999999999999999999999999999999774 45577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVG 209 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 209 (505)
+.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+++|+.||++.++..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (460)
T 3mkt_A 89 FEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFI 168 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999999999987777788888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-c---CcccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCCHHhhhCHHHHHHHHHHHH
Q 046061 210 VFLLHILLTWIVVFV-L---DYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKD-T-WTGLSIKAFRGIWPYFKLTVASA 283 (505)
Q Consensus 210 ~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~p~~ 283 (505)
+.++|+++++++++. + ++|+.|+++|+.+++.+..++..++++++++.+. + ++++...+++..|+++++++|..
T Consensus 169 ~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 248 (460)
T 3mkt_A 169 GLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248 (460)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHH
Confidence 999999999999975 3 6999999999999999999988888876643322 1 12222345688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 046061 284 VMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGIL 363 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 363 (505)
++++...+...+++.+++.++ ++++|+|++++++.++..++..+++++..|.+++++|++|.++.++..+++.++...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~ 326 (460)
T 3mkt_A 249 AALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLA 326 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHH
Q 046061 364 ISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGC 443 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 443 (505)
++++++++++++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++|+++
T Consensus 327 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 406 (460)
T 3mkt_A 327 TACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGY 406 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh----cC-CCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 444 ILGFK----TI-LGVAGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 444 ~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
++.+. ++ +|..|+|+++.+++++..++..+.++|+.+
T Consensus 407 ~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 407 ILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 67 999999999999999998887776666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.80 E-value=1.1e-18 Score=175.43 Aligned_cols=203 Identities=13% Similarity=0.106 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061 50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG 129 (505)
Q Consensus 50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 129 (505)
..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++ ...+..+++++..|.+++.+|++|+++.+
T Consensus 236 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~~~ 314 (460)
T 3mkt_A 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKGAA 314 (460)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCTTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999995 45688899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 046061 130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSV 208 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 208 (505)
+..+.++.+....+++..+ +..+++++..++..+++..+.+..++++.+++.++..++....+.+++.||++.++..++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 394 (460)
T 3mkt_A 315 IAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTF 394 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 9999999999999999988 899999999988888888888999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHh----cC-cccchhHHHHHHHHHHHHHHHHHHHHh
Q 046061 209 GVF-LLHILLTWIVVFV----LD-YGLLGAALTLGLSWWLLVIINGLYIVL 253 (505)
Q Consensus 209 ~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 253 (505)
++. ++++++++++... ++ +|+.|+++|+.++..+..++..++.++
T Consensus 395 ~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 395 ISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 9999999999876 56 999999999999999988876655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=81.23 E-value=38 Score=32.18 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=12.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 046061 450 ILGVAGIWWGMIIGVLLQTTTL 471 (505)
Q Consensus 450 ~~g~~G~~~a~~~~~~~~~~~~ 471 (505)
..|....++...+..++..++.
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 3566666666555555544443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=39.15 E-value=2.4e+02 Score=26.21 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhHHHHHHHHH
Q 046061 55 WLLSWASIVVSIFNYMLSFVTLMFTGHL--GALELAGASIAS 94 (505)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~~~~~~i~~l--g~~~~~~~~~~~ 94 (505)
.-...-.++..+...........+..++ ++++.|......
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 70 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAF 70 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333333444444444444444455555 455555544333
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=38.61 E-value=2.7e+02 Score=26.53 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=8.9
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 046061 450 ILGVAGIWWGMIIGVLLQTT 469 (505)
Q Consensus 450 ~~g~~G~~~a~~~~~~~~~~ 469 (505)
+.+....+.......++..+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 447 AKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp GSSTTHHHHHTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 34544455444444444333
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.59 E-value=1e+02 Score=17.91 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 046061 454 AGIWWGMIIGVLLQTTTLIILTA 476 (505)
Q Consensus 454 ~G~~~a~~~~~~~~~~~~~~~~~ 476 (505)
.|+.++.+++-.+...+.+++++
T Consensus 14 AGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeehHHHHHHHHHHHHHHHHee
Confidence 34555555444444444443333
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.72 E-value=2.4e+02 Score=19.45 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 046061 452 GVAGIWWGMIIGVLLQTTTLIILT 475 (505)
Q Consensus 452 g~~G~~~a~~~~~~~~~~~~~~~~ 475 (505)
.+.++..+.+.+-++.+++.+..+
T Consensus 9 n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444443333
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.31 E-value=1.6e+02 Score=17.74 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.9
Q ss_pred HHHHHhc
Q 046061 248 GLYIVLS 254 (505)
Q Consensus 248 ~~~~~~~ 254 (505)
..|++|+
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3344443
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=15.29 E-value=70 Score=29.83 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred HhhcCcchHHHHHHHHHHHHhhhhHHHHHHHh-------cCCCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061 417 AIGSGWQAVVAYVNLATYYIIGLPIGCILGFK-------TILGVAGIWWGMIIGVLLQTTTLIILTARTNW 480 (505)
Q Consensus 417 l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (505)
..+.......-..++++ ++.+|+.++.+.+ |..+..-.++...+.+++.++..+++++|++|
T Consensus 294 ~is~~~N~imk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIA--TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
No 10
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=12.82 E-value=53 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCcchhhhhh
Q 046061 479 NWNTEVEKAADRLRKSSNEERFET 502 (505)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~ 502 (505)
+..+.+++.++|.+...++++.|+
T Consensus 2 kId~li~RIreRaEDSGNESeGD~ 25 (45)
T 1vpu_A 2 QIDRLIDRITERAEDSGNESEGDQ 25 (45)
T ss_dssp CHHHHHHHHHHTTCHHHHTTTTHH
T ss_pred cHHHHHHHHHHhhhcCCCCCcccH
Done!