Query 046061
Match_columns 505
No_of_seqs 245 out of 2187
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 14:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046061.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046061hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 69.0 36 0.0026 29.8 19.9 27 226-252 406-432 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 57.3 59 0.0043 28.2 35.0 25 450-474 406-430 (447)
3 d1vpua_ g.34.1.1 (A:) HIV-1 VP 13.5 23 0.0017 19.8 0.4 22 480-501 3-24 (45)
4 d1lghb_ f.3.1.1 (B:) Light-har 9.4 1.3E+02 0.0096 16.6 2.7 33 346-378 10-42 (43)
5 d1nkzb_ f.3.1.1 (B:) Light-har 7.6 1.8E+02 0.013 15.5 4.5 34 346-379 7-40 (41)
6 d2iuba2 f.17.3.1 (A:286-349) M 6.0 2E+02 0.015 17.0 2.8 8 437-444 15-22 (64)
7 d1m56d_ f.23.8.1 (D:) Bacteria 3.9 3.6E+02 0.026 14.6 3.9 26 343-368 5-30 (42)
8 d1jo5a_ f.3.1.1 (A:) Light-har 3.7 2.3E+02 0.017 15.9 1.6 33 346-378 15-47 (48)
9 d2oara1 f.16.1.1 (A:10-118) Ga 3.6 5.8E+02 0.042 17.0 4.1 17 455-471 61-77 (109)
10 d1ijdb_ f.3.1.1 (B:) Light-har 3.3 3.9E+02 0.028 14.1 4.3 32 346-377 8-39 (40)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=68.98 E-value=36 Score=29.75 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=13.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH
Q 046061 226 DYGLLGAALTLGLSWWLLVIINGLYIV 252 (505)
Q Consensus 226 ~~g~~g~~~a~~i~~~~~~~~~~~~~~ 252 (505)
+.|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555555555555554444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=57.30 E-value=59 Score=28.21 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=14.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Q 046061 450 ILGVAGIWWGMIIGVLLQTTTLIIL 474 (505)
Q Consensus 450 ~~g~~G~~~a~~~~~~~~~~~~~~~ 474 (505)
..|..+..+......++..++....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766666655555554444433
No 3
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=13.45 E-value=23 Score=19.81 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHhcCcchhhhh
Q 046061 480 WNTEVEKAADRLRKSSNEERFE 501 (505)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~ 501 (505)
..+.+++.++|.+...+|++.|
T Consensus 3 IdrLi~RIrERAEDSGNESeGD 24 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGNESEGD 24 (45)
T ss_dssp HHHHHHHHHHTTCHHHHTTTTH
T ss_pred HHHHHHHHHHHcccCCCCCccc
Confidence 3456677777777666665554
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=9.45 E-value=1.3e+02 Score=16.57 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046061 346 HPRVAKFSVIVVNATGILISIVFCAIVLIFRVG 378 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (505)
+.++..+.+..+......++++.=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666677777777777666666666555443
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.63 E-value=1.8e+02 Score=15.52 Aligned_cols=34 Identities=12% Similarity=-0.080 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046061 346 HPRVAKFSVIVVNATGILISIVFCAIVLIFRVGL 379 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 379 (505)
+.+++.+....+.+....++++.=++.+...+++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888888888888888777777776654
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.01 E-value=2e+02 Score=17.04 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.5
Q ss_pred hhhhHHHH
Q 046061 437 IGLPIGCI 444 (505)
Q Consensus 437 ~~i~l~~~ 444 (505)
+.+|+.++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.87 E-value=3.6e+02 Score=14.56 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=11.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHH
Q 046061 343 GAAHPRVAKFSVIVVNATGILISIVF 368 (505)
Q Consensus 343 g~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (505)
|+-|...-.+.+---+++..-.++.+
T Consensus 5 G~MDi~vQEKTF~gFik~~t~~~i~~ 30 (42)
T d1m56d_ 5 GSMDITQQEKTFAGFVRMVTWAAVVI 30 (42)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.74 E-value=2.3e+02 Score=15.93 Aligned_cols=33 Identities=15% Similarity=-0.062 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046061 346 HPRVAKFSVIVVNATGILISIVFCAIVLIFRVG 378 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (505)
+.++..+.+..++.....++++.=++.+...|+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566666677766666666666666555544
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.59 E-value=5.8e+02 Score=16.98 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046061 455 GIWWGMIIGVLLQTTTL 471 (505)
Q Consensus 455 G~~~a~~~~~~~~~~~~ 471 (505)
|.++...+..++.++..
T Consensus 61 G~fi~a~InFlIiA~vv 77 (109)
T d2oara1 61 NVLLSAAINFFLIAFAV 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55565666555544433
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.34 E-value=3.9e+02 Score=14.10 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046061 346 HPRVAKFSVIVVNATGILISIVFCAIVLIFRV 377 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (505)
+.+++.+....+.+....++++.=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45777888888888888777776666655544
Done!