BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046062
         (468 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
            (isolate 3D7) GN=PF13_0198 PE=3 SV=1
          Length = 3130

 Score = 37.4 bits (85), Expect = 0.22,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 297  EPLQTEETWK----ERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTAS 352
            E LQ EE  K    ERL  EK  + + E  +   E     E    + +L  Q +E+    
Sbjct: 2745 ERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQ----ERLQKEEALKRQEQERLQKE 2800

Query: 353  KDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESE 412
            ++  R E E+ E   KQE  Q+ EEL + E+     E     Q  E    EE+   QE E
Sbjct: 2801 EELKRQEQERLER-EKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQE 2859

Query: 413  ELEKQK 418
             LE++K
Sbjct: 2860 RLERKK 2865



 Score = 33.1 bits (74), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 340  SLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEI 399
            +L  Q +E+    ++  R E E+ E   KQE  Q+ EEL + E+     E     Q  E 
Sbjct: 2738 ALKRQEQERLQKEEELKRQEQERLER-EKQEQLQKEEELKRQEQERLQKEEALKRQEQER 2796

Query: 400  EPSEEKPDEQESEELEKQK 418
               EE+   QE E LE++K
Sbjct: 2797 LQKEEELKRQEQERLEREK 2815


>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
            (isolate 3D7) GN=PF11_0240 PE=3 SV=1
          Length = 5251

 Score = 34.3 bits (77), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 20/161 (12%)

Query: 192  QDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAE-------- 243
            +D    E    D++  E      + + +N + E A EK +  + + +E   E        
Sbjct: 4106 EDEKAIEINTEDEKAVEKNTEDEKAVEKNTEDEKAIEK-NTEDEKAVEKNTEDEKAVEKN 4164

Query: 244  AETERVEQTIREESKGPE--------VKSKEENERVAEESPGRTETVSSKPDGEAEISKI 295
             E E+  +   E+ K  E        V+   E+E+V EE+    + V    + E  + K 
Sbjct: 4165 TEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKN 4224

Query: 296  TEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGD 336
            TE    E+  +E++ +EK  E + E    G E  + ++  D
Sbjct: 4225 TE---DEKVVEEKIEDEKGEEQKAEEENVGIEEVEKVQIDD 4262


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.126    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,657,942
Number of Sequences: 539616
Number of extensions: 8991090
Number of successful extensions: 55371
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 2605
Number of HSP's that attempted gapping in prelim test: 37109
Number of HSP's gapped (non-prelim): 11282
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 63 (28.9 bits)