Query 046062
Match_columns 468
No_of_seqs 138 out of 956
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 08:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 8.4E-26 1.8E-30 197.8 11.3 102 32-142 35-137 (137)
2 PRK11597 heat shock chaperone 99.9 2.9E-25 6.2E-30 196.4 11.7 105 30-143 31-136 (142)
3 cd06472 ACD_ScHsp26_like Alpha 99.9 5.8E-25 1.3E-29 176.4 10.9 91 34-128 2-92 (92)
4 COG0071 IbpA Molecular chapero 99.9 7E-25 1.5E-29 189.8 12.2 107 30-141 39-145 (146)
5 cd06471 ACD_LpsHSP_like Group 99.9 1.1E-23 2.5E-28 168.1 9.9 91 33-128 2-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.2E-22 2.6E-27 163.8 10.6 89 32-128 1-90 (90)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 3.7E-22 8E-27 159.8 11.6 100 36-142 2-102 (102)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.9E-21 4.2E-26 157.5 9.6 83 35-128 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 4.6E-21 9.9E-26 153.9 9.5 82 36-128 2-83 (83)
10 cd06482 ACD_HspB10 Alpha cryst 99.8 3.6E-21 7.9E-26 158.2 9.1 81 39-127 6-86 (87)
11 cd06498 ACD_alphaB-crystallin_ 99.8 6.3E-21 1.4E-25 154.2 9.4 82 37-129 3-84 (84)
12 cd06479 ACD_HspB7_like Alpha c 99.8 8.1E-21 1.8E-25 153.9 8.2 79 35-128 2-81 (81)
13 cd06476 ACD_HspB2_like Alpha c 99.8 7.8E-20 1.7E-24 148.1 10.0 80 38-128 4-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.8 5.4E-20 1.2E-24 149.4 9.1 84 37-128 3-87 (87)
15 cd06475 ACD_HspB1_like Alpha c 99.8 9.9E-20 2.1E-24 147.6 9.3 82 35-127 4-85 (86)
16 cd06464 ACD_sHsps-like Alpha-c 99.8 3.8E-19 8.2E-24 135.7 10.1 87 36-128 2-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 5.4E-19 1.2E-23 144.1 9.6 80 37-127 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 3E-19 6.5E-24 141.4 7.8 77 41-128 7-83 (83)
19 KOG0710 Molecular chaperone (s 99.7 6.6E-17 1.4E-21 148.3 7.7 110 30-142 83-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.6 1.4E-14 3.1E-19 120.6 10.2 81 36-127 10-90 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 3.7E-13 8E-18 97.5 8.7 80 36-128 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.2 1.6E-10 3.6E-15 105.8 12.4 99 33-142 64-162 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.2 1.9E-10 4.2E-15 88.4 9.1 71 36-131 1-71 (78)
24 cd06463 p23_like Proteins cont 98.8 5.9E-08 1.3E-12 72.9 9.1 76 36-131 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.7 9.4E-08 2E-12 89.2 9.0 80 31-133 91-172 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.2 7.7E-06 1.7E-10 63.4 8.3 77 35-131 1-77 (84)
27 PF08190 PIH1: pre-RNA process 97.7 0.00013 2.9E-09 69.2 8.7 70 37-127 257-327 (328)
28 PF04969 CS: CS domain; Inter 97.2 0.0037 7.9E-08 46.9 9.3 77 32-128 1-79 (79)
29 cd06465 p23_hB-ind1_like p23_l 96.8 0.011 2.4E-07 49.2 9.1 78 32-130 1-78 (108)
30 cd06467 p23_NUDC_like p23_like 96.2 0.02 4.3E-07 44.8 6.8 74 35-131 2-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 95.6 0.1 2.2E-06 41.4 8.6 77 35-131 1-77 (84)
32 cd06493 p23_NUDCD1_like p23_NU 95.2 0.21 4.6E-06 40.2 9.1 75 35-132 2-78 (85)
33 cd06468 p23_CacyBP p23_like do 94.6 0.45 9.7E-06 38.1 9.5 78 34-131 4-85 (92)
34 cd06494 p23_NUDCD2_like p23-li 94.3 0.19 4.1E-06 42.4 7.1 76 33-131 7-83 (93)
35 cd06488 p23_melusin_like p23_l 93.9 0.66 1.4E-05 37.7 9.2 78 34-131 3-80 (87)
36 PLN03088 SGT1, suppressor of 85.2 4.4 9.5E-05 40.5 8.4 80 32-131 157-236 (356)
37 cd06490 p23_NCB5OR p23_like do 83.3 20 0.00042 29.5 10.1 80 34-131 1-80 (87)
38 cd00237 p23 p23 binds heat sho 80.6 20 0.00043 31.0 9.6 79 32-132 2-80 (106)
39 cd06492 p23_mNUDC_like p23-lik 80.3 8.4 0.00018 31.9 7.0 74 36-131 3-79 (87)
40 PF14913 DPCD: DPCD protein fa 75.8 20 0.00044 35.0 9.0 102 2-129 61-169 (194)
41 KOG2952 Cell cycle control pro 73.1 1.5 3.3E-05 45.6 0.9 25 444-468 316-340 (351)
42 cd06495 p23_NUDCD3_like p23-li 71.3 26 0.00057 30.3 7.9 77 33-130 6-86 (102)
43 PF03381 CDC50: LEM3 (ligand-e 66.6 2.5 5.3E-05 41.7 0.8 24 444-467 250-273 (278)
44 PF04478 Mid2: Mid2 like cell 65.5 2.3 4.9E-05 40.0 0.3 26 443-468 53-79 (154)
45 KOG1309 Suppressor of G2 allel 64.8 20 0.00044 35.1 6.5 77 34-130 6-82 (196)
46 COG5035 CDC50 Cell cycle contr 55.5 4.9 0.00011 42.0 0.7 24 444-467 337-360 (372)
47 TIGR02976 phageshock_pspB phag 49.8 9.2 0.0002 32.0 1.3 23 443-467 9-31 (75)
48 PF01299 Lamp: Lysosome-associ 45.6 6.1 0.00013 38.9 -0.4 26 442-467 273-298 (306)
49 PF14341 PilX_N: PilX N-termin 29.8 37 0.0008 25.9 1.7 14 448-461 2-15 (51)
50 cd06482 ACD_HspB10 Alpha cryst 28.4 81 0.0018 26.5 3.7 31 96-129 10-40 (87)
51 PF13349 DUF4097: Domain of un 27.0 4E+02 0.0088 22.8 8.6 62 56-125 86-147 (166)
52 PF10389 CoatB: Bacteriophage 26.6 52 0.0011 25.8 2.0 21 445-465 24-44 (46)
53 cd06471 ACD_LpsHSP_like Group 26.6 95 0.0021 25.0 3.7 32 95-129 11-42 (93)
54 PF01102 Glycophorin_A: Glycop 25.8 39 0.00084 30.6 1.4 21 446-466 71-91 (122)
55 cd06470 ACD_IbpA-B_like Alpha- 25.6 1E+02 0.0022 25.2 3.7 35 94-131 11-45 (90)
56 cd06472 ACD_ScHsp26_like Alpha 24.6 1.3E+02 0.0028 24.4 4.2 32 95-128 10-41 (92)
57 PTZ00382 Variant-specific surf 24.6 35 0.00076 29.3 0.9 11 457-467 85-95 (96)
58 PF12669 P12: Virus attachment 23.7 72 0.0016 25.3 2.4 24 444-467 2-25 (58)
59 cd06478 ACD_HspB4-5-6 Alpha-cr 23.6 1.3E+02 0.0028 24.5 4.0 30 95-127 8-37 (83)
60 cd06477 ACD_HspB3_Like Alpha c 23.6 1.1E+02 0.0024 25.5 3.6 31 95-128 8-38 (83)
61 PF06667 PspB: Phage shock pro 23.3 74 0.0016 26.8 2.5 18 450-467 14-31 (75)
62 PF15102 TMEM154: TMEM154 prot 23.0 18 0.00038 34.0 -1.3 25 443-468 64-88 (146)
63 cd06476 ACD_HspB2_like Alpha c 23.0 1.2E+02 0.0025 25.1 3.6 31 95-128 8-38 (83)
64 cd06497 ACD_alphaA-crystallin_ 23.0 1.2E+02 0.0026 25.0 3.7 30 95-127 11-40 (86)
65 TIGR03501 gamma_C_targ gammapr 20.9 1.1E+02 0.0024 21.4 2.6 21 447-467 2-22 (26)
66 PF09163 Form-deh_trans: Forma 20.6 80 0.0017 24.5 2.0 20 446-465 15-34 (44)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=8.4e-26 Score=197.84 Aligned_cols=102 Identities=14% Similarity=0.242 Sum_probs=87.1
Q ss_pred Cccccc-ccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCC
Q 046062 32 PIFVSE-ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDK 110 (468)
Q Consensus 32 P~Fns~-ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DK 110 (468)
|.++++ +++++|+|.|+||||+|+||+|+|+ +++|+|+|+++.+. .+ ..|+|+||++|+|+|+|+||++||.+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~--~~~LtI~ge~~~~~-~~--~~~~~~Er~~g~F~R~~~LP~~Vd~~- 108 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQ--DNLLVVKGAHADEQ-KE--RTYLYQGIAERNFERKFQLAENIHVR- 108 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEECccc-cC--CcEEEEEEECCEEEEEEECCCCcccC-
Confidence 667888 5899999999999999999999995 67999999986543 22 24899999999999999999999999
Q ss_pred cEEEeeCCCcEEEEEccCcCCCCCCceEEeec
Q 046062 111 VKAKFNEETSNLTIFMPKSVKGHSGVVIEEVK 142 (468)
Q Consensus 111 IKAKYkNENGVLTITLPKkEeek~gvkIeEVK 142 (468)
+|+|+ ||||+|+|||........+.++|+
T Consensus 109 -~A~~~--dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 109 -GANLV--NGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred -cCEEe--CCEEEEEEeCCCccccCCeEEeeC
Confidence 49998 899999999986555566666663
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.92 E-value=2.9e-25 Score=196.41 Aligned_cols=105 Identities=21% Similarity=0.286 Sum_probs=89.1
Q ss_pred CCCcccccc-cCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCcc
Q 046062 30 SGPIFVSEE-TDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVIL 108 (468)
Q Consensus 30 ~~P~Fns~E-TDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~ 108 (468)
+.|.++++| ++++|+|+|+||||+|+||+|+|+ +++|+|+|++..+. .+ ..|+|+||+||+|+|+|+||.+||.
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~--~~~LtI~ge~~~~~-~~--~~~~~~Er~~g~F~R~f~LP~~vd~ 105 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE--GTRLTVKGTPEQPE-KE--VKWLHQGLVNQPFSLSFTLAENMEV 105 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE--CCEEEEEEEEcccc-CC--CcEEEEEEeCcEEEEEEECCCCccc
Confidence 347788887 578999999999999999999995 78999999986432 22 2499999999999999999999999
Q ss_pred CCcEEEeeCCCcEEEEEccCcCCCCCCceEEeecc
Q 046062 109 DKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVKE 143 (468)
Q Consensus 109 DKIKAKYkNENGVLTITLPKkEeek~gvkIeEVKe 143 (468)
+ +|+|+ ||||+|+|||........+.++|++
T Consensus 106 ~--~A~~~--nGVL~I~lPK~~~~~~~~rkI~I~~ 136 (142)
T PRK11597 106 S--GATFV--NGLLHIDLIRNEPEAIAPQRIAISE 136 (142)
T ss_pred C--cCEEc--CCEEEEEEeccCccccCCcEEEECC
Confidence 8 79998 8999999999865555667777764
No 3
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.92 E-value=5.8e-25 Score=176.42 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=80.9
Q ss_pred ccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEE
Q 046062 34 FVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKA 113 (468)
Q Consensus 34 Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKA 113 (468)
++++|++++|+|.|+||||+++||+|+++ ++++|+|+|++....... +..|+++||.+|+|+|+|.||.+||.++|+|
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~-~~~~L~I~g~~~~~~~~~-~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A 79 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVE-DGRVLRISGERKKEEEKK-GDDWHRVERSSGRFVRRFRLPENADADEVKA 79 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEe-CCCEEEEEEEeccccccc-CCCEEEEEEeccEEEEEEECCCCCCHHHCEE
Confidence 46789999999999999999999999996 346999999987643332 2359999999999999999999999999999
Q ss_pred EeeCCCcEEEEEccC
Q 046062 114 KFNEETSNLTIFMPK 128 (468)
Q Consensus 114 KYkNENGVLTITLPK 128 (468)
+|+ ||||+|+|||
T Consensus 80 ~~~--nGvL~I~lPK 92 (92)
T cd06472 80 FLE--NGVLTVTVPK 92 (92)
T ss_pred EEE--CCEEEEEecC
Confidence 998 8999999998
No 4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7e-25 Score=189.76 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=91.9
Q ss_pred CCCcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccC
Q 046062 30 SGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILD 109 (468)
Q Consensus 30 ~~P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~D 109 (468)
+.|.++++++++.|+|+|+||||+++||+|+++ +++|+|+|++..+...+.. .|+++||+||+|+|+|.||..||.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~--~~~l~I~g~~~~~~~~~~~-~~~~~e~~~~~f~r~~~Lp~~v~~~ 115 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVE--GNTLTIRGEREEEEEEEEE-GYLRRERAYGEFERTFRLPEKVDPE 115 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE--CCEEEEEEEecccccccCC-ceEEEEEEeeeEEEEEECccccccc
Confidence 678899999999999999999999999999995 7899999999863322222 3899999999999999999999999
Q ss_pred CcEEEeeCCCcEEEEEccCcCCCCCCceEEee
Q 046062 110 KVKAKFNEETSNLTIFMPKSVKGHSGVVIEEV 141 (468)
Q Consensus 110 KIKAKYkNENGVLTITLPKkEeek~gvkIeEV 141 (468)
.|+|+|+ ||||+|+|||.+......+.++|
T Consensus 116 ~~~A~~~--nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 116 VIKAKYK--NGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred ceeeEee--CcEEEEEEeccccccccCceeec
Confidence 9999998 89999999999877544444433
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.90 E-value=1.1e-23 Score=168.09 Aligned_cols=91 Identities=26% Similarity=0.378 Sum_probs=79.4
Q ss_pred cccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeecccee-eecceEEEEEEeecceEEEEEECCCCCccCCc
Q 046062 33 IFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEM-VLMGWIVQKKEVEIRAFRKVFQIPNGVILDKV 111 (468)
Q Consensus 33 ~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEe-eEe~~~Y~RRERsyGsFsRSFtLPddVD~DKI 111 (468)
.++++|++++|+|.++||||+++||+|++. ++.|+|+|++..... ......|+++||.+|+|+|+|.|| +||.++|
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~--~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYK--DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 357789999999999999999999999995 689999999976321 111224899999999999999999 7999999
Q ss_pred EEEeeCCCcEEEEEccC
Q 046062 112 KAKFNEETSNLTIFMPK 128 (468)
Q Consensus 112 KAKYkNENGVLTITLPK 128 (468)
+|+|+ ||||+|+|||
T Consensus 79 ~A~~~--dGvL~I~lPK 93 (93)
T cd06471 79 KAKYE--NGVLKITLPK 93 (93)
T ss_pred EEEEE--CCEEEEEEcC
Confidence 99998 8999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.88 E-value=1.2e-22 Score=163.83 Aligned_cols=89 Identities=22% Similarity=0.425 Sum_probs=77.7
Q ss_pred CcccccccC-CeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCC
Q 046062 32 PIFVSEETD-SKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDK 110 (468)
Q Consensus 32 P~Fns~ETD-DeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DK 110 (468)
|.+++++++ ++|+|.++||||+|+||+|+++ ++.|+|+|+++..... +..|+++||.+|+|+|+|.||.+||.+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~--~~~L~I~g~~~~~~~~--~~~~~~~e~~~g~f~R~~~LP~~vd~~- 75 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE--NNQLTVTGKKADEENE--EREYLHRGIAKRAFERSFNLADHVKVK- 75 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEcccccC--CCcEEEEEEeceEEEEEEECCCCceEC-
Confidence 456777875 9999999999999999999995 6899999999875442 234889999999999999999999875
Q ss_pred cEEEeeCCCcEEEEEccC
Q 046062 111 VKAKFNEETSNLTIFMPK 128 (468)
Q Consensus 111 IKAKYkNENGVLTITLPK 128 (468)
+|+|+ ||||+|+||+
T Consensus 76 -~A~~~--~GvL~I~l~~ 90 (90)
T cd06470 76 -GAELE--NGLLTIDLER 90 (90)
T ss_pred -eeEEe--CCEEEEEEEC
Confidence 99998 8999999985
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.88 E-value=3.7e-22 Score=159.76 Aligned_cols=100 Identities=28% Similarity=0.434 Sum_probs=80.0
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
+.+++++|+|.++||||.++||+|+++ ++.|+|+|.+. ...... .++++|+++++|.|+|.||.+||.++|+|+|
T Consensus 2 i~e~~~~~~i~~~lpG~~~edi~I~~~--~~~L~I~g~~~-~~~~~~--~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~ 76 (102)
T PF00011_consen 2 IKEDEDEYIIKVDLPGFDKEDIKIKVD--DNKLVISGKRK-EEEEDD--RYYRSERRYGSFERSIRLPEDVDPDKIKASY 76 (102)
T ss_dssp EEESSSEEEEEEE-TTS-GGGEEEEEE--TTEEEEEEEEE-GEECTT--CEEEE-S-SEEEEEEEE-STTB-GGG-EEEE
T ss_pred eEECCCEEEEEEECCCCChHHEEEEEe--cCccceeceee-eeeeee--eeeecccccceEEEEEcCCCcCCcceEEEEe
Confidence 578999999999999999999999996 67899999998 222222 3778999999999999999999999999999
Q ss_pred eCCCcEEEEEccCcCCCCC-CceEEeec
Q 046062 116 NEETSNLTIFMPKSVKGHS-GVVIEEVK 142 (468)
Q Consensus 116 kNENGVLTITLPKkEeek~-gvkIeEVK 142 (468)
+ ||+|+|+|||.....+ ..+.++|+
T Consensus 77 ~--~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 77 E--NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp T--TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred c--CCEEEEEEEccccccCCCCeEEEeC
Confidence 6 8999999999988764 77887775
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.86 E-value=1.9e-21 Score=157.53 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=71.3
Q ss_pred cccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEE
Q 046062 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAK 114 (468)
Q Consensus 35 ns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAK 114 (468)
++++++++|.|.++||||+++||+|++. ++.|+|+|++.... .+. .|+++| |+|+|+||.+||.++|+|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~--~~~L~I~g~~~~~~-~~~--~~~~~e-----f~R~~~LP~~Vd~~~i~A~ 73 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL--DDYVEIHGKHSERQ-DDH--GYISRE-----FHRRYRLPSNVDQSAITCS 73 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEccee-CCC--CEEEEE-----EEEEEECCCCCChHHeEEE
Confidence 4689999999999999999999999995 67999999875332 222 266765 9999999999999999999
Q ss_pred eeCCCcEEEEEccC
Q 046062 115 FNEETSNLTIFMPK 128 (468)
Q Consensus 115 YkNENGVLTITLPK 128 (468)
|. +||||+|+|||
T Consensus 74 ~~-~dGvL~I~~PK 86 (86)
T cd06497 74 LS-ADGMLTFSGPK 86 (86)
T ss_pred eC-CCCEEEEEecC
Confidence 93 28999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.85 E-value=4.6e-21 Score=153.93 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=70.0
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
+.+++++|+|.++||||+++||+|++. +++|+|+|++.... ...+ |+++| |+|+|+||.+||.++|+|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~--~~~L~I~g~~~~~~-~~~~--~~~~e-----f~R~~~LP~~vd~~~i~A~~ 71 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVL--GDFVEIHGKHEERQ-DEHG--FISRE-----FHRRYRLPPGVDPAAITSSL 71 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEceEc-CCCC--EEEEE-----EEEEEECCCCcChHHeEEEE
Confidence 358899999999999999999999995 68999999875422 2222 66665 99999999999999999999
Q ss_pred eCCCcEEEEEccC
Q 046062 116 NEETSNLTIFMPK 128 (468)
Q Consensus 116 kNENGVLTITLPK 128 (468)
. +||||+|+|||
T Consensus 72 ~-~dGvL~I~~PK 83 (83)
T cd06478 72 S-ADGVLTISGPR 83 (83)
T ss_pred C-CCCEEEEEecC
Confidence 4 28999999998
No 10
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.85 E-value=3.6e-21 Score=158.15 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=71.0
Q ss_pred cCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEeeCC
Q 046062 39 TDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEE 118 (468)
Q Consensus 39 TDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKYkNE 118 (468)
++++|+|.|+||||+++||+|+|. +++|+|+|+++.....+ + ++||+||+|+|+|+||.+||.++|+|+|+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~--~~~L~I~ger~~~~e~~-~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~- 77 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK--DGKVQVSAERENRYDCL-G----SKKYSYMNICKEFSLPPGVDEKDVTYSYGL- 77 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEecccccC-C----ccEEEEEEEEEEEECCCCcChHHcEEEEcC-
Confidence 568999999999999999999995 68999999997643321 2 358999999999999999999999999996
Q ss_pred CcEEEEEcc
Q 046062 119 TSNLTIFMP 127 (468)
Q Consensus 119 NGVLTITLP 127 (468)
+|||+|.-|
T Consensus 78 ~~~l~i~~~ 86 (87)
T cd06482 78 GSVVKIETP 86 (87)
T ss_pred CCEEEEeeC
Confidence 779999876
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.84 E-value=6.3e-21 Score=154.23 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=69.8
Q ss_pred cccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEee
Q 046062 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFN 116 (468)
Q Consensus 37 ~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKYk 116 (468)
++++++|.|.|+||||+++||+|++. ++.|+|+|++.... ...+ |+++ .|+|+|.||.+||.++|+|+|.
T Consensus 3 ~~~~~~~~v~~dlpG~~~edi~V~v~--~~~L~I~g~~~~~~-~~~~--~~~~-----eF~R~~~LP~~vd~~~i~A~~~ 72 (84)
T cd06498 3 RLEKDKFSVNLDVKHFSPEELKVKVL--GDFIEIHGKHEERQ-DEHG--FISR-----EFQRKYRIPADVDPLTITSSLS 72 (84)
T ss_pred EeCCceEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEccee-CCCC--EEEE-----EEEEEEECCCCCChHHcEEEeC
Confidence 46789999999999999999999995 68999999875432 2223 5555 4999999999999999999995
Q ss_pred CCCcEEEEEccCc
Q 046062 117 EETSNLTIFMPKS 129 (468)
Q Consensus 117 NENGVLTITLPKk 129 (468)
+||||+|+|||+
T Consensus 73 -~dGvL~I~lPk~ 84 (84)
T cd06498 73 -PDGVLTVCGPRK 84 (84)
T ss_pred -CCCEEEEEEeCC
Confidence 289999999995
No 12
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.83 E-value=8.1e-21 Score=153.91 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=70.6
Q ss_pred cccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEE
Q 046062 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAK 114 (468)
Q Consensus 35 ns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAK 114 (468)
|++|++++|.|.|+||||+++||+|+++ +++|+|+|+++... + +.||+|+|+|.||.+||.++|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~--~~~L~I~ger~~~~----~-------~~~g~F~R~~~LP~~vd~e~v~A~ 68 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS--NNQIEVHAEKLASD----G-------TVMNTFTHKCQLPEDVDPTSVSSS 68 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEeccC----C-------CEEEEEEEEEECCCCcCHHHeEEE
Confidence 5689999999999999999999999995 68999999986322 1 358999999999999999999999
Q ss_pred e-eCCCcEEEEEccC
Q 046062 115 F-NEETSNLTIFMPK 128 (468)
Q Consensus 115 Y-kNENGVLTITLPK 128 (468)
| + ||||+|+|++
T Consensus 69 l~~--~GvL~I~~~~ 81 (81)
T cd06479 69 LGE--DGTLTIKARR 81 (81)
T ss_pred ecC--CCEEEEEecC
Confidence 7 6 8999999986
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.82 E-value=7.8e-20 Score=148.11 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=67.5
Q ss_pred ccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEeeC
Q 046062 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNE 117 (468)
Q Consensus 38 ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKYkN 117 (468)
.++++|.|.++||||+++||+|++. +++|+|+|++.... ...+ |+++ .|+|+|.||.+||.++|+|+|.
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~--~~~L~I~g~~~~~~-~~~~--~~~~-----eF~R~~~LP~~vd~~~v~A~~~- 72 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTV--DNLLEVSARHPQRM-DRHG--FVSR-----EFTRTYILPMDVDPLLVRASLS- 72 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEE--CCEEEEEEEEccee-cCCC--EEEE-----EEEEEEECCCCCChhhEEEEec-
Confidence 4678999999999999999999995 67999999985422 2222 4444 4999999999999999999995
Q ss_pred CCcEEEEEccC
Q 046062 118 ETSNLTIFMPK 128 (468)
Q Consensus 118 ENGVLTITLPK 128 (468)
.||||+|+|||
T Consensus 73 ~dGvL~I~~Pr 83 (83)
T cd06476 73 HDGILCIQAPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 28999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.81 E-value=5.4e-20 Score=149.38 Aligned_cols=84 Identities=23% Similarity=0.415 Sum_probs=71.1
Q ss_pred cccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe-
Q 046062 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF- 115 (468)
Q Consensus 37 ~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY- 115 (468)
.+..+.|.|.|+||||+++||+|++. +++|+|+|++........+ .|+ |.+|+|+|+|.||.+||.++|+|+|
T Consensus 3 ~~~~d~~~v~~dlpG~~~edI~V~v~--~~~L~I~g~~~~~~~~~~~-~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~ 76 (87)
T cd06481 3 KDGKEGFSLKLDVRGFSPEDLSVRVD--GRKLVVTGKREKKNEDEKG-SFS---YEYQEFVREAQLPEHVDPEAVTCSLS 76 (87)
T ss_pred CCccceEEEEEECCCCChHHeEEEEE--CCEEEEEEEEeeecccCCC-cEE---EEeeEEEEEEECCCCcChHHeEEEeC
Confidence 35678999999999999999999995 7899999998654332222 243 4589999999999999999999999
Q ss_pred eCCCcEEEEEccC
Q 046062 116 NEETSNLTIFMPK 128 (468)
Q Consensus 116 kNENGVLTITLPK 128 (468)
+ ||||+|++|+
T Consensus 77 ~--dGvL~I~~P~ 87 (87)
T cd06481 77 P--SGHLHIRAPR 87 (87)
T ss_pred C--CceEEEEcCC
Confidence 6 8999999995
No 15
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.81 E-value=9.9e-20 Score=147.59 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=70.0
Q ss_pred cccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEE
Q 046062 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAK 114 (468)
Q Consensus 35 ns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAK 114 (468)
+++|++++|.|.++||||+++||+|++. ++.|+|+|++.... ...+ |+ +++|+|+|+||.+||.++|+|+
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~--~~~L~I~g~~~~~~-~~~~--~~-----~~~f~R~f~LP~~vd~~~v~A~ 73 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTK--DGVVEITGKHEEKQ-DEHG--FV-----SRCFTRKYTLPPGVDPTAVTSS 73 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEE--CCEEEEEEEECcCc-CCCC--EE-----EEEEEEEEECCCCCCHHHcEEE
Confidence 5689999999999999999999999995 67999999986432 2222 32 3599999999999999999999
Q ss_pred eeCCCcEEEEEcc
Q 046062 115 FNEETSNLTIFMP 127 (468)
Q Consensus 115 YkNENGVLTITLP 127 (468)
|. +||||+|+||
T Consensus 74 ~~-~dGvL~I~lP 85 (86)
T cd06475 74 LS-PDGILTVEAP 85 (86)
T ss_pred EC-CCCeEEEEec
Confidence 96 2799999998
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.80 E-value=3.8e-19 Score=135.66 Aligned_cols=87 Identities=30% Similarity=0.508 Sum_probs=77.6
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
+.+++++|+|.++||||++++|+|+++ ++.|.|+|.+........ .++..++.+|.|.|+|.||.+||.++|+|.|
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~--~~~l~I~g~~~~~~~~~~--~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~ 77 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVE--DGVLTISGEREEEEEEEE--NYLRRERSYGSFSRSFRLPEDVDPDKIKASL 77 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEecccccCC--cEEEEEEeCcEEEEEEECCCCcCHHHcEEEE
Confidence 357889999999999999999999996 689999999986433222 3788999999999999999999999999999
Q ss_pred eCCCcEEEEEccC
Q 046062 116 NEETSNLTIFMPK 128 (468)
Q Consensus 116 kNENGVLTITLPK 128 (468)
. ||+|+|++||
T Consensus 78 ~--~G~L~I~~pk 88 (88)
T cd06464 78 E--NGVLTITLPK 88 (88)
T ss_pred e--CCEEEEEEcC
Confidence 8 7999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.79 E-value=5.4e-19 Score=144.07 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=67.3
Q ss_pred cccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEee
Q 046062 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFN 116 (468)
Q Consensus 37 ~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKYk 116 (468)
-|++++|+|+|+||||+++||+|++. +++|+|+|++.... .+.+ |++ ++|+|+|+||.+||.++|+|+|.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~--~~~L~I~ge~~~~~-~~~~--~~~-----r~F~R~~~LP~~Vd~~~v~A~~~ 72 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVF--EGWLLIKGQHGVRM-DEHG--FIS-----RSFTRQYQLPDGVEHKDLSAMLC 72 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEE--CCEEEEEEEEcccc-CCCC--EEE-----EEEEEEEECCCCcchheEEEEEc
Confidence 47899999999999999999999995 78999999987643 2223 322 39999999999999999999983
Q ss_pred CCCcEEEEEcc
Q 046062 117 EETSNLTIFMP 127 (468)
Q Consensus 117 NENGVLTITLP 127 (468)
+||||+|+-|
T Consensus 73 -~dGvL~I~~~ 82 (83)
T cd06477 73 -HDGILVVETK 82 (83)
T ss_pred -CCCEEEEEec
Confidence 2899999865
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=3e-19 Score=141.41 Aligned_cols=77 Identities=31% Similarity=0.512 Sum_probs=67.2
Q ss_pred CeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEeeCCCc
Q 046062 41 SKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETS 120 (468)
Q Consensus 41 DeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKYkNENG 120 (468)
++|.|.++||||+++||+|+++ ++.|+|+|++..... + ..+.+|+|+|+|.||.+||.++|+|+|.| ||
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~--~~~L~I~g~~~~~~~---~-----~~~~~~~f~r~~~LP~~vd~~~i~A~~~~-~G 75 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVS--DNKLVVEGKHEERED---E-----HGYVSREFTRRYQLPEGVDPDSVTSSLSS-DG 75 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEE--CCEEEEEEEEeeecc---C-----CCEEEEEEEEEEECCCCCChHHeEEEeCC-Cc
Confidence 6999999999999999999995 689999999875432 1 12457999999999999999999999983 49
Q ss_pred EEEEEccC
Q 046062 121 NLTIFMPK 128 (468)
Q Consensus 121 VLTITLPK 128 (468)
||+|++||
T Consensus 76 vL~I~~Pk 83 (83)
T cd06526 76 VLTIEAPK 83 (83)
T ss_pred EEEEEecC
Confidence 99999998
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.6e-17 Score=148.31 Aligned_cols=110 Identities=21% Similarity=0.347 Sum_probs=93.4
Q ss_pred CCCcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeee-cceEEEEEEeecceEEEEEECCCCCcc
Q 046062 30 SGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVL-MGWIVQKKEVEIRAFRKVFQIPNGVIL 108 (468)
Q Consensus 30 ~~P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeE-e~~~Y~RRERsyGsFsRSFtLPddVD~ 108 (468)
+.+..++.++.+.|++.++|||+.+++|.|.+++ .++|+|+|++..+.... .+..+++.||.+|.|.|+|.||.+|+.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~-~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~ 161 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVED-EKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDV 161 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEecc-CcEEEEecccccccccccCCccceeehhcccceEeeecCCccccH
Confidence 3444666899999999999999999999999974 55899999998754321 222478999999999999999999999
Q ss_pred CCcEEEeeCCCcEEEEEccCcCC--CCCCceEEeec
Q 046062 109 DKVKAKFNEETSNLTIFMPKSVK--GHSGVVIEEVK 142 (468)
Q Consensus 109 DKIKAKYkNENGVLTITLPKkEe--ek~gvkIeEVK 142 (468)
+.|+|.|+ ||||+|++||... ..+.++.+.|+
T Consensus 162 d~ikA~~~--nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 162 DEIKAEME--NGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHhh--CCeEEEEEecccccccCCccceeecc
Confidence 99999998 8999999999998 56777777765
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.57 E-value=1.4e-14 Score=120.62 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=69.7
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
...+++.|.|.+++-||+++||+|++. +++|+|+|++.... .+.+ |+ +++|+|+|.||.+||.+.|+|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~--~~~L~V~Gkh~~~~-~e~g--~~-----~r~F~R~~~LP~~Vd~~~v~s~l 79 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTK--DGFVEVSGKHEEQQ-KEGG--IV-----SKNFTKKIQLPPEVDPVTVFASL 79 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEE--CCEEEEEEEECccc-CCCC--EE-----EEEEEEEEECCCCCCchhEEEEe
Confidence 356788999999999999999999995 78999999987643 2223 33 37899999999999999999999
Q ss_pred eCCCcEEEEEcc
Q 046062 116 NEETSNLTIFMP 127 (468)
Q Consensus 116 kNENGVLTITLP 127 (468)
. +||||+|.+|
T Consensus 80 ~-~dGvL~IeaP 90 (91)
T cd06480 80 S-PEGLLIIEAP 90 (91)
T ss_pred C-CCCeEEEEcC
Confidence 9 4999999998
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.46 E-value=3.7e-13 Score=97.50 Aligned_cols=80 Identities=30% Similarity=0.506 Sum_probs=70.2
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
|.++++.|.|+++|||+.+++|+|.++ ++.|+|+|....... .++..+.|.+.|.||..||.+.++|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~--~~~l~v~~~~~~~~~---------~~~~~~~~~~~~~L~~~i~~~~~~~~~ 69 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE--DNVLTISGKREEEEE---------RERSYGEFERSFELPEDVDPEKSKASL 69 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEcCCCc---------ceEeeeeEEEEEECCCCcCHHHCEEEE
Confidence 357889999999999999999999996 589999998765322 345678999999999999999999999
Q ss_pred eCCCcEEEEEccC
Q 046062 116 NEETSNLTIFMPK 128 (468)
Q Consensus 116 kNENGVLTITLPK 128 (468)
. +|+|+|+|||
T Consensus 70 ~--~~~l~i~l~K 80 (80)
T cd00298 70 E--NGVLEITLPK 80 (80)
T ss_pred E--CCEEEEEEcC
Confidence 8 7999999998
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-10 Score=105.76 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=82.2
Q ss_pred cccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcE
Q 046062 33 IFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVK 112 (468)
Q Consensus 33 ~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIK 112 (468)
...+..+++.|.|.+|+-.|++++|.|.+. +++|.|.|+..... ++.+ |+.| .|.|.|.||.+||.+.|+
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~--~~~l~V~gkHeer~-d~~G--~v~R-----~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTD--DNTLEVEGKHEEKE-DEHG--YVSR-----SFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeC--CCEEEEEeeecccc-CCCC--eEEE-----EEEEEecCCCCCChhheE
Confidence 344578899999999999999999999994 77999999876543 2223 4443 699999999999999999
Q ss_pred EEeeCCCcEEEEEccCcCCCCCCceEEeec
Q 046062 113 AKFNEETSNLTIFMPKSVKGHSGVVIEEVK 142 (468)
Q Consensus 113 AKYkNENGVLTITLPKkEeek~gvkIeEVK 142 (468)
+.+.+ +|||||..||........+++.|+
T Consensus 134 S~LS~-dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 134 STLSS-DGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EeeCC-CceEEEEccCCCCcCccceEEeEe
Confidence 99995 999999999988776666666665
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.16 E-value=1.9e-10 Score=88.37 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=63.0
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
|+++++.+.|++++||++++||+|+++ ++.|+|++ ..|.+++.||..||.+.++|+|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~--~~~l~i~~---------------------~~~~~~~~l~~~I~~e~~~~~~ 57 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCS--DLYLKVNF---------------------PPYLFELDLAAPIDDEKSSAKI 57 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEe--cCEEEEcC---------------------CCEEEEEeCcccccccccEEEE
Confidence 357899999999999999999999995 56788876 1378899999999999999999
Q ss_pred eCCCcEEEEEccCcCC
Q 046062 116 NEETSNLTIFMPKSVK 131 (468)
Q Consensus 116 kNENGVLTITLPKkEe 131 (468)
. +|+|.|+|||.+.
T Consensus 58 ~--~~~l~i~L~K~~~ 71 (78)
T cd06469 58 G--NGVLVFTLVKKEP 71 (78)
T ss_pred e--CCEEEEEEEeCCC
Confidence 8 7999999999864
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.77 E-value=5.9e-08 Score=72.86 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=64.8
Q ss_pred ccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 36 SEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 36 s~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
|.++++.+.|.+.+||+.+++++|.+. ++.|+|++... ..+.|.+.+.|+..||.+...+++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~--~~~l~i~~~~~----------------~~~~~~~~~~L~~~I~~~~s~~~~ 62 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFT--PKSLTVSVKGG----------------GGKEYLLEGELFGPIDPEESKWTV 62 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEe--cCEEEEEeeCC----------------CCCceEEeeEccCccchhhcEEEE
Confidence 357889999999999999999999995 56788886533 114577889999999999999999
Q ss_pred eCCCcEEEEEccCcCC
Q 046062 116 NEETSNLTIFMPKSVK 131 (468)
Q Consensus 116 kNENGVLTITLPKkEe 131 (468)
. +|.|.|+|+|+..
T Consensus 63 ~--~~~l~i~L~K~~~ 76 (84)
T cd06463 63 E--DRKIEITLKKKEP 76 (84)
T ss_pred e--CCEEEEEEEECCC
Confidence 8 7999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.66 E-value=9.4e-08 Score=89.17 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCcccccccCC-eEEEEEecCCCCCCC-eEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCcc
Q 046062 31 GPIFVSEETDS-KFILTGYLKGFRREN-IDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVIL 108 (468)
Q Consensus 31 ~P~Fns~ETDD-eYILeAELPGVkKED-IDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~ 108 (468)
.+.+.+.+.++ .++|.|+||||++++ |+|.++.+.+.|+|+.. +.|.+.+.||.. +.
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~--------------------~~~~krv~L~~~-~~ 149 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG--------------------EKYLKRVALPWP-DP 149 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC--------------------CceEeeEecCCC-cc
Confidence 45566677777 799999999999999 99999877888888522 224457899966 78
Q ss_pred CCcEEEeeCCCcEEEEEccCcCCCC
Q 046062 109 DKVKAKFNEETSNLTIFMPKSVKGH 133 (468)
Q Consensus 109 DKIKAKYkNENGVLTITLPKkEeek 133 (468)
+.++|.|+ ||||.|+|=+.+...
T Consensus 150 e~~~~t~n--NgILEIri~~~~~~~ 172 (177)
T PF05455_consen 150 EITSATFN--NGILEIRIRRTEESS 172 (177)
T ss_pred ceeeEEEe--CceEEEEEeecCCCC
Confidence 99999998 899999998877544
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.22 E-value=7.7e-06 Score=63.41 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=64.0
Q ss_pred cccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEE
Q 046062 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAK 114 (468)
Q Consensus 35 ns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAK 114 (468)
+|+.+++.+.|.+.+||+.+++++|.+. .+.|.|++... ..+.|.-.+.|...|+.+..+++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~--~~~l~i~~~~~----------------~~~~~~~~~~L~~~I~~~~s~~~ 62 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFN--EQSLSVSIILP----------------GGSEYQLELDLFGPIDPEQSKVS 62 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe--cCEEEEEEECC----------------CCCeEEEecccccccCchhcEEE
Confidence 3678999999999999999999999996 46788865422 01346778899999999999999
Q ss_pred eeCCCcEEEEEccCcCC
Q 046062 115 FNEETSNLTIFMPKSVK 131 (468)
Q Consensus 115 YkNENGVLTITLPKkEe 131 (468)
+. +|.|.|+|.|...
T Consensus 63 ~~--~~~vei~L~K~~~ 77 (84)
T cd06466 63 VL--PTKVEITLKKAEP 77 (84)
T ss_pred Ee--CeEEEEEEEcCCC
Confidence 97 7999999999874
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.73 E-value=0.00013 Score=69.20 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=56.8
Q ss_pred cccCCeEEEEEecCCC-CCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEe
Q 046062 37 EETDSKFILTGYLKGF-RRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKF 115 (468)
Q Consensus 37 ~ETDDeYILeAELPGV-kKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKY 115 (468)
...-+.++|+++|||+ +-.+|+|+|. ...|.|..... .|+=.+.||..||.+..+|+|
T Consensus 257 ~~~p~~lvv~i~LP~~~s~~~i~LdV~--~~~l~l~~~~~-------------------~y~L~l~LP~~V~~~~~~Akf 315 (328)
T PF08190_consen 257 SGSPEELVVEIELPGVESASDIDLDVS--EDRLSLSSPKP-------------------KYRLDLPLPYPVDEDNGKAKF 315 (328)
T ss_pred CCCCceEEEEEECCCcCccceeEEEEe--CCEEEEEeCCC-------------------ceEEEccCCCcccCCCceEEE
Confidence 3456899999999999 8999999996 45666654322 122248999999999999999
Q ss_pred eCCCcEEEEEcc
Q 046062 116 NEETSNLTIFMP 127 (468)
Q Consensus 116 kNENGVLTITLP 127 (468)
.-+.++|+|+||
T Consensus 316 ~~~~~~L~vtlp 327 (328)
T PF08190_consen 316 DKKTKTLTVTLP 327 (328)
T ss_pred ccCCCEEEEEEE
Confidence 988899999998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.25 E-value=0.0037 Score=46.94 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=58.2
Q ss_pred CcccccccCCeEEEEEecCCC--CCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccC
Q 046062 32 PIFVSEETDSKFILTGYLKGF--RRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILD 109 (468)
Q Consensus 32 P~Fns~ETDDeYILeAELPGV--kKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~D 109 (468)
|-+.|..+++...|.+.+++. +++||+|++. .+.|+++...... ..|.-.+.|...|+.+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~--~~~l~v~~~~~~~----------------~~~~~~~~L~~~I~~~ 62 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFT--DTSLSVSIKSGDG----------------KEYLLEGELFGEIDPD 62 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEE--TTEEEEEEEETTS----------------CEEEEEEEBSS-BECC
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEE--eeEEEEEEEccCC----------------ceEEEEEEEeeeEcch
Confidence 346688999999999999665 5999999996 5677777432211 1344456788999999
Q ss_pred CcEEEeeCCCcEEEEEccC
Q 046062 110 KVKAKFNEETSNLTIFMPK 128 (468)
Q Consensus 110 KIKAKYkNENGVLTITLPK 128 (468)
....++. ++.|.|+|.|
T Consensus 63 ~s~~~~~--~~~i~i~L~K 79 (79)
T PF04969_consen 63 ESTWKVK--DNKIEITLKK 79 (79)
T ss_dssp CEEEEEE--TTEEEEEEEB
T ss_pred hcEEEEE--CCEEEEEEEC
Confidence 9999998 6899999987
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.80 E-value=0.011 Score=49.18 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=62.2
Q ss_pred CcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCc
Q 046062 32 PIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKV 111 (468)
Q Consensus 32 P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKI 111 (468)
|.+.|+.+.+...|++.+||+ +++.|.+. .+.|+|++.... .+ ..|.-.+.|...|+.+..
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~--~~~l~v~~~~~~-----~~----------~~y~~~~~L~~~I~pe~s 61 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLE--PTSLSFKAKGGG-----GG----------KKYEFDLEFYKEIDPEES 61 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEE--CCEEEEEEEcCC-----CC----------eeEEEEeEhhhhcccccc
Confidence 567789999999999999998 88999995 567888764211 11 124456688899999999
Q ss_pred EEEeeCCCcEEEEEccCcC
Q 046062 112 KAKFNEETSNLTIFMPKSV 130 (468)
Q Consensus 112 KAKYkNENGVLTITLPKkE 130 (468)
+.++. ++.|.|+|-|+.
T Consensus 62 ~~~v~--~~kveI~L~K~~ 78 (108)
T cd06465 62 KYKVT--GRQIEFVLRKKE 78 (108)
T ss_pred EEEec--CCeEEEEEEECC
Confidence 99997 699999999987
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.21 E-value=0.02 Score=44.81 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=56.4
Q ss_pred cccccCCeEEEEEecC-CCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEE
Q 046062 35 VSEETDSKFILTGYLK-GFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKA 113 (468)
Q Consensus 35 ns~ETDDeYILeAELP-GVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKA 113 (468)
.|..+++...|++.+| |+.++||+|++.. +.|+|+... .. ++ +. ..|...||.+...-
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~--~~l~v~~~~-------~~--~~--------l~--~~L~~~I~~~~s~w 60 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP--KHLKVGVKG-------GE--PL--------LD--GELYAKVKVDESTW 60 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc--CEEEEEECC-------CC--ce--------Ec--CcccCceeEcCCEE
Confidence 4678899999999997 7899999999974 567776531 00 11 11 24667899999988
Q ss_pred EeeCCC-cEEEEEccCcCC
Q 046062 114 KFNEET-SNLTIFMPKSVK 131 (468)
Q Consensus 114 KYkNEN-GVLTITLPKkEe 131 (468)
++. + ..|.|+|+|++.
T Consensus 61 ~~~--~~~~v~i~L~K~~~ 77 (85)
T cd06467 61 TLE--DGKLLEITLEKRNE 77 (85)
T ss_pred EEe--CCCEEEEEEEECCC
Confidence 887 6 899999999875
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=95.62 E-value=0.1 Score=41.45 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=59.6
Q ss_pred cccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEE
Q 046062 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAK 114 (468)
Q Consensus 35 ns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAK 114 (468)
+|+.+++...|++.++|+.++++.|.+. .+.|++++.... + ..|.-.+.|-..|+.+..+.+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~--~~~l~~~~~~~~------~----------~~y~~~~~L~~~I~p~~s~~~ 62 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFE--KRELSATVKLPS------G----------NDYSLKLHLLHPIVPEQSSYK 62 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe--CCEEEEEEECCC------C----------CcEEEeeecCceecchhcEEE
Confidence 3568889999999999999999999996 457877764310 1 124445788889999988888
Q ss_pred eeCCCcEEEEEccCcCC
Q 046062 115 FNEETSNLTIFMPKSVK 131 (468)
Q Consensus 115 YkNENGVLTITLPKkEe 131 (468)
.. .+-+.|+|.|++.
T Consensus 63 v~--~~kiei~L~K~~~ 77 (84)
T cd06489 63 IL--STKIEIKLKKTEA 77 (84)
T ss_pred Ee--CcEEEEEEEcCCC
Confidence 87 5779999999753
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=95.16 E-value=0.21 Score=40.17 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=55.5
Q ss_pred cccccCCeEEEEEecC-CCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEE
Q 046062 35 VSEETDSKFILTGYLK-GFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKA 113 (468)
Q Consensus 35 ns~ETDDeYILeAELP-GVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKA 113 (468)
.|+.+.+...|.+.+| |+.++||+|++. .+.|+++.... . . | -...|...||.|.-.=
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~--~~~l~v~~~~~-------~--~---------~-~~g~L~~~I~~d~Stw 60 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFL--PDHISIALKDQ-------A--P---------L-LEGKLYSSIDHESSTW 60 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEe--cCEEEEEeCCC-------C--e---------E-EeCcccCcccccCcEE
Confidence 4678999999999996 999999999996 45677754100 0 0 1 1225778899999887
Q ss_pred EeeCCCc-EEEEEccCcCCC
Q 046062 114 KFNEETS-NLTIFMPKSVKG 132 (468)
Q Consensus 114 KYkNENG-VLTITLPKkEee 132 (468)
... +| .|.|+|.|++++
T Consensus 61 ~i~--~~~~l~i~L~K~~~~ 78 (85)
T cd06493 61 IIK--ENKSLEVSLIKKDEG 78 (85)
T ss_pred EEe--CCCEEEEEEEECCCC
Confidence 775 35 799999998754
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=94.56 E-value=0.45 Score=38.08 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=57.7
Q ss_pred ccccccCCeEEEEEecCCCCC---CCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEE-ECCCCCccC
Q 046062 34 FVSEETDSKFILTGYLKGFRR---ENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVF-QIPNGVILD 109 (468)
Q Consensus 34 Fns~ETDDeYILeAELPGVkK---EDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSF-tLPddVD~D 109 (468)
+.|..+++...|++.+|++.. +|++|.+. .+.|.+++... .+..| .=.+ .|-..|+.+
T Consensus 4 y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~--~~~l~v~~~~~------~~~~~----------~~~~~~L~~~I~~e 65 (92)
T cd06468 4 YAWDQSDKFVKIYITLKGVHQLPKENIQVEFT--ERSFELKVHDL------NGKNY----------RFTINRLLKKIDPE 65 (92)
T ss_pred eeeecCCCEEEEEEEccCCCcCCcccEEEEec--CCEEEEEEECC------CCcEE----------EEEehHhhCccCcc
Confidence 456789999999999999986 99999995 56788876321 11011 1122 355789999
Q ss_pred CcEEEeeCCCcEEEEEccCcCC
Q 046062 110 KVKAKFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 110 KIKAKYkNENGVLTITLPKkEe 131 (468)
..+.+.. .+-+.|+|.|.+.
T Consensus 66 ~s~~~~~--~~ki~i~L~K~~~ 85 (92)
T cd06468 66 KSSFKVK--TDRIVITLAKKKE 85 (92)
T ss_pred ccEEEEe--CCEEEEEEEeCCC
Confidence 9999987 6889999999874
No 34
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.33 E-value=0.19 Score=42.38 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=55.8
Q ss_pred cccccccCCeEEEEEecC-CCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCc
Q 046062 33 IFVSEETDSKFILTGYLK-GFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKV 111 (468)
Q Consensus 33 ~Fns~ETDDeYILeAELP-GVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKI 111 (468)
-+.|..|.+...|++.|| |++++||+|++.. +.|+|.-.-. +.-.| .|...|+.|..
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~--~~l~V~~~g~--------------~~l~G------~L~~~I~~des 64 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS--RDISLAVKGQ--------------EVLKG------KLFDSVVADEC 64 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEc--CEEEEEECCE--------------EEEcC------cccCccCcccC
Confidence 456789999999999887 8999999999974 5566642100 01123 45678899988
Q ss_pred EEEeeCCCcEEEEEccCcCC
Q 046062 112 KAKFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 112 KAKYkNENGVLTITLPKkEe 131 (468)
.=.+.+ +.+|.|+|.|...
T Consensus 65 tWtled-~k~l~I~L~K~~~ 83 (93)
T cd06494 65 TWTLED-RKLIRIVLTKSNR 83 (93)
T ss_pred EEEEEC-CcEEEEEEEeCCC
Confidence 888873 5679999999763
No 35
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=93.87 E-value=0.66 Score=37.67 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=60.4
Q ss_pred ccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEE
Q 046062 34 FVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKA 113 (468)
Q Consensus 34 Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKA 113 (468)
++|+.+++...|++.+.|+.++++.+.++ .+.|+++..-.. + -.|.-.|.|-..||.+..+-
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~--~~~l~v~~~~~~------~----------~~y~~~l~L~~~I~~~~s~~ 64 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEAN--STVLTIHIVFEG------N----------KEFQLDIELWGVIDVEKSSV 64 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEec--CCEEEEEEECCC------C----------ceEEEEeeccceEChhHcEE
Confidence 46788999999999999999999999995 456776532211 1 12556678888999999887
Q ss_pred EeeCCCcEEEEEccCcCC
Q 046062 114 KFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 114 KYkNENGVLTITLPKkEe 131 (468)
+.. .+-+.|+|.|++.
T Consensus 65 ~v~--~~kvei~L~K~~~ 80 (87)
T cd06488 65 NML--PTKVEIKLRKAEP 80 (87)
T ss_pred Eec--CcEEEEEEEeCCC
Confidence 776 6889999999864
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=85.20 E-value=4.4 Score=40.50 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=61.1
Q ss_pred CcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCc
Q 046062 32 PIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKV 111 (468)
Q Consensus 32 P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKI 111 (468)
+-++|+.+++..+|++.+.|+.++++.|.+. .+.|+|+-.... + ..|.-.|.|=..|+.++.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~--~~~l~v~~~~~~------~----------~~y~~~~~L~~~I~p~~s 218 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFG--EQILSVVIEVPG------E----------DAYHLQPRLFGKIIPDKC 218 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEee--cCEEEEEEecCC------C----------cceeeccccccccccccc
Confidence 3477899999999999999999999999996 456777643211 1 123345678789999998
Q ss_pred EEEeeCCCcEEEEEccCcCC
Q 046062 112 KAKFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 112 KAKYkNENGVLTITLPKkEe 131 (468)
+-+.. -.-+.|+|-|++.
T Consensus 219 ~~~v~--~~Kiei~l~K~~~ 236 (356)
T PLN03088 219 KYEVL--STKIEIRLAKAEP 236 (356)
T ss_pred EEEEe--cceEEEEEecCCC
Confidence 88887 4678899988764
No 37
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=83.32 E-value=20 Score=29.49 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=51.3
Q ss_pred ccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEE
Q 046062 34 FVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKA 113 (468)
Q Consensus 34 Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKA 113 (468)
++|+.+++..+|.+-..+....+.+|.++...+.|+|+---. -..|...|.|=..|+.+. ..
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-----------------~~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-----------------DKSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-----------------CceEEEeeeccccCCCCc-EE
Confidence 467899999999999996554554544433445677752211 012556667777888774 55
Q ss_pred EeeCCCcEEEEEccCcCC
Q 046062 114 KFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 114 KYkNENGVLTITLPKkEe 131 (468)
++.-.-|=+.|+|.|++.
T Consensus 63 ~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETGKIELVLKKKEP 80 (87)
T ss_pred EEcccCceEEEEEEcCCC
Confidence 543113579999999874
No 38
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=80.62 E-value=20 Score=30.98 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=54.1
Q ss_pred CcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCc
Q 046062 32 PIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKV 111 (468)
Q Consensus 32 P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKI 111 (468)
|-+.+..+.+...|++.+|+ .+|+.|++. ...|+++|... . +..|+ =.+.|=..|+.++-
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~--~~~l~f~~~~~-~-----g~~y~----------~~l~l~~~I~pe~S 61 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFE--KSKLTFSCLNG-D-----NVKIY----------NEIELYDRVDPNDS 61 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEe--cCEEEEEEECC-C-----CcEEE----------EEEEeecccCcccC
Confidence 55778889999999999999 579999996 45788887321 1 11122 12344467888876
Q ss_pred EEEeeCCCcEEEEEccCcCCC
Q 046062 112 KAKFNEETSNLTIFMPKSVKG 132 (468)
Q Consensus 112 KAKYkNENGVLTITLPKkEee 132 (468)
+-+.. .--+.|.|.|++..
T Consensus 62 k~~v~--~r~ve~~L~K~~~~ 80 (106)
T cd00237 62 KHKRT--DRSILCCLRKGKEG 80 (106)
T ss_pred eEEeC--CceEEEEEEeCCCC
Confidence 66654 34477889998643
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=80.26 E-value=8.4 Score=31.86 Aligned_cols=74 Identities=15% Similarity=0.083 Sum_probs=50.0
Q ss_pred ccccCCeEEEEEecC---CCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcE
Q 046062 36 SEETDSKFILTGYLK---GFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVK 112 (468)
Q Consensus 36 s~ETDDeYILeAELP---GVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIK 112 (468)
+.-|.++..|++.|| |++..||+|.+. .+.|++.-.... ++- -| .|...||.|.-.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~--~~~l~v~~~g~~---------~~i----~G------~L~~~V~~des~ 61 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQ--RKHLKVGLKGQP---------PII----DG------ELYNEVKVEESS 61 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEe--cCEEEEEECCCc---------eEE----eC------cccCcccccccE
Confidence 456778889999985 389999999996 456666432110 100 12 345678888877
Q ss_pred EEeeCCCcEEEEEccCcCC
Q 046062 113 AKFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 113 AKYkNENGVLTITLPKkEe 131 (468)
=.+.+ +.+|.|+|=|...
T Consensus 62 Wtled-~~~l~i~L~K~~~ 79 (87)
T cd06492 62 WLIED-GKVVTVNLEKINK 79 (87)
T ss_pred EEEeC-CCEEEEEEEECCC
Confidence 77862 3499999999753
No 40
>PF14913 DPCD: DPCD protein family
Probab=75.78 E-value=20 Score=35.01 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=70.4
Q ss_pred cccccceecccCCCccccccCceeecCCCCCcccccccCCeEEEEE-ecCCCCCCCeEEEEecCCCEEEEEeeeccceee
Q 046062 2 ELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTG-YLKGFRRENIDIMINEAGDKIAISGKKPVQEMV 80 (468)
Q Consensus 2 e~el~~~~~r~n~D~~~~ia~lq~~~D~~~P~Fns~ETDDeYILeA-ELPGVkKEDIDIsVdEDgntLTISGERk~EEee 80 (468)
|+|+|=-.+..+.. +...-+..+...|+|...+|..+|.-.+ .|| +.++-..|+++++...|+|+-..+
T Consensus 61 e~EvGep~~~~~~~----~~~~~i~ESs~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNK----- 130 (194)
T PF14913_consen 61 EIEVGEPEPTQNNN----LESELIKESSSNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNK----- 130 (194)
T ss_pred EEEeCCCCccccCC----CCcceeeecCCCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCc-----
Confidence 46666544444321 1223344567799999999999998887 466 788999999988878898874422
Q ss_pred ecceEEEEEEeecceEEEEEECCC------CCccCCcEEEeeCCCcEEEEEccCc
Q 046062 81 LMGWIVQKKEVEIRAFRKVFQIPN------GVILDKVKAKFNEETSNLTIFMPKS 129 (468)
Q Consensus 81 Ee~~~Y~RRERsyGsFsRSFtLPd------dVD~DKIKAKYkNENGVLTITLPKk 129 (468)
.| .+.|.+|+ ..+.+.+.-.+. |.-|.|+--|-
T Consensus 131 ----KY----------yKk~~IPDl~R~~l~l~~~~ls~~h~--nNTLIIsYkKP 169 (194)
T PF14913_consen 131 ----KY----------YKKFSIPDLDRCGLPLEQSALSFAHQ--NNTLIISYKKP 169 (194)
T ss_pred ----cc----------eeEecCCcHHhhCCCcchhhceeeee--cCeEEEEecCc
Confidence 13 34466665 246777888887 78999987764
No 41
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=73.12 E-value=1.5 Score=45.60 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=22.2
Q ss_pred eeecchhHHHHHHHHHHHHHHhhcC
Q 046062 444 LVVAGSALLVSLIVLVFQLIRAKKR 468 (468)
Q Consensus 444 l~~~gs~llv~~i~lv~~~ir~~k~ 468 (468)
|||||+.+|++++|+|++++.-|++
T Consensus 316 LvVG~ic~~l~~~f~~~~l~~~r~~ 340 (351)
T KOG2952|consen 316 LVVGSICILLGLIFLVIYLFKPRRL 340 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 6899999999999999999887753
No 42
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=71.32 E-value=26 Score=30.26 Aligned_cols=77 Identities=4% Similarity=0.073 Sum_probs=52.5
Q ss_pred cccccccCCeEEEEEecC-C-CCCCCeEEEEecCCCEEEEEeee--ccceeeecceEEEEEEeecceEEEEEECCCCCcc
Q 046062 33 IFVSEETDSKFILTGYLK-G-FRRENIDIMINEAGDKIAISGKK--PVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVIL 108 (468)
Q Consensus 33 ~Fns~ETDDeYILeAELP-G-VkKEDIDIsVdEDgntLTISGER--k~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~ 108 (468)
-|.|.-|.+...|++.|| | .+..||.|.+. .+.|.|.-.. ... .++ -| .|...|+.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~--~~~l~v~~~~~~~~~-------~~i-----~G------~L~~~V~~ 65 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQ--SSSIRVSVRDGGGEK-------VLM-----EG------EFTHKINT 65 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEE--cCEEEEEEecCCCCc-------eEE-----eC------cccCcccC
Confidence 456778999999999999 5 46899999996 4556654321 100 011 12 35567888
Q ss_pred CCcEEEeeCCCcEEEEEccCcC
Q 046062 109 DKVKAKFNEETSNLTIFMPKSV 130 (468)
Q Consensus 109 DKIKAKYkNENGVLTITLPKkE 130 (468)
|.-.=.+.+ +-.|.|+|-|..
T Consensus 66 des~Wtled-~~~l~I~L~K~~ 86 (102)
T cd06495 66 ENSLWSLEP-GKCVLLSLSKCS 86 (102)
T ss_pred ccceEEEeC-CCEEEEEEEECC
Confidence 887777873 355899999974
No 43
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=66.61 E-value=2.5 Score=41.72 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.3
Q ss_pred eeecchhHHHHHHHHHHHHHHhhc
Q 046062 444 LVVAGSALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 444 l~~~gs~llv~~i~lv~~~ir~~k 467 (468)
||+||..|+++||||++++++-||
T Consensus 250 lvvg~i~~v~~i~~~~~~~~~~r~ 273 (278)
T PF03381_consen 250 LVVGGICLVLAIIFLIIHYFKPRK 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 678999999999999999997775
No 44
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=65.48 E-value=2.3 Score=40.04 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=18.4
Q ss_pred Ceeec-chhHHHHHHHHHHHHHHhhcC
Q 046062 443 PLVVA-GSALLVSLIVLVFQLIRAKKR 468 (468)
Q Consensus 443 pl~~~-gs~llv~~i~lv~~~ir~~k~ 468 (468)
=+||| |.+||+.+++|||.|.+.+||
T Consensus 53 GvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEEecccHHHHHHHHHhheeEEEeccc
Confidence 34666 778888888888777665554
No 45
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=64.85 E-value=20 Score=35.08 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=51.9
Q ss_pred ccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEE
Q 046062 34 FVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKA 113 (468)
Q Consensus 34 Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKA 113 (468)
.+|+.+....+|++-++||.++|++|.+. .++|.|.-.-+..+ . |+. ...|=..|..++..-
T Consensus 6 ~DwyQt~~~vvIti~~k~v~~~~v~v~~s--~~~l~~~~~~~~g~----~--~~l----------~~~L~~~I~pe~~s~ 67 (196)
T KOG1309|consen 6 HDWYQTETSVVITIFAKNVPKEDVNVEIS--ENTLSIVIQLPSGS----E--YNL----------QLKLYHEIIPEKSSF 67 (196)
T ss_pred ceeecCCceEEEEEEecCCCccceeEEee--cceEEEEEecCCch----h--hhh----------hHHhcccccccceee
Confidence 56789999999999999999999999995 45666654433111 1 111 122335677777655
Q ss_pred EeeCCCcEEEEEccCcC
Q 046062 114 KFNEETSNLTIFMPKSV 130 (468)
Q Consensus 114 KYkNENGVLTITLPKkE 130 (468)
+.- ---+.|+|+|.+
T Consensus 68 k~~--stKVEI~L~K~~ 82 (196)
T KOG1309|consen 68 KVF--STKVEITLAKAE 82 (196)
T ss_pred Eee--eeeEEEEecccc
Confidence 543 355889999954
No 46
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=55.46 E-value=4.9 Score=41.96 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.9
Q ss_pred eeecchhHHHHHHHHHHHHHHhhc
Q 046062 444 LVVAGSALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 444 l~~~gs~llv~~i~lv~~~ir~~k 467 (468)
||+||+..|.+||||+.++|+-||
T Consensus 337 livg~ical~~~if~~~~~f~pR~ 360 (372)
T COG5035 337 LIVGGICALLGLIFLIKWLFKPRK 360 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcc
Confidence 578999999999999999999886
No 47
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=49.81 E-value=9.2 Score=32.00 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=18.0
Q ss_pred CeeecchhHHHHHHHHHHHHHHhhc
Q 046062 443 PLVVAGSALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 443 pl~~~gs~llv~~i~lv~~~ir~~k 467 (468)
|||+. .++|+.|.|++||...++
T Consensus 9 Pliif--~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 9 PLIIF--VIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHH--HHHHHHHHHHHHHHhhhc
Confidence 55554 678899999999997765
No 48
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=45.57 E-value=6.1 Score=38.87 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=15.7
Q ss_pred CCeeecchhHHHHHHHHHHHHHHhhc
Q 046062 442 PPLVVAGSALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 442 ppl~~~gs~llv~~i~lv~~~ir~~k 467 (468)
-|++||..-.++.||+|+..+|..|+
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEecc
Confidence 37888776555556666655554443
No 49
>PF14341 PilX_N: PilX N-terminal
Probab=29.78 E-value=37 Score=25.89 Aligned_cols=14 Identities=50% Similarity=0.852 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHH
Q 046062 448 GSALLVSLIVLVFQ 461 (468)
Q Consensus 448 gs~llv~~i~lv~~ 461 (468)
|++|.++||||++-
T Consensus 2 G~aLvvaLi~l~vl 15 (51)
T PF14341_consen 2 GAALVVALIILLVL 15 (51)
T ss_pred cchHHHHHHHHHHH
Confidence 88999999888763
No 50
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=28.38 E-value=81 Score=26.54 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred EEEEEECCCCCccCCcEEEeeCCCcEEEEEccCc
Q 046062 96 FRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKS 129 (468)
Q Consensus 96 FsRSFtLPddVD~DKIKAKYkNENGVLTITLPKk 129 (468)
|.=+..|| +++.+.|+-++. ||.|+|+-=+.
T Consensus 10 ~~v~adlP-G~~kedI~V~v~--~~~L~I~ger~ 40 (87)
T cd06482 10 VLASVDVC-GFEPDQVKVKVK--DGKVQVSAERE 40 (87)
T ss_pred EEEEEECC-CCCHHHeEEEEE--CCEEEEEEEEe
Confidence 44457898 799999999998 79999996553
No 51
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=26.95 E-value=4e+02 Score=22.79 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=32.3
Q ss_pred CeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCcEEEeeCCCcEEEEE
Q 046062 56 NIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIF 125 (468)
Q Consensus 56 DIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKIKAKYkNENGVLTIT 125 (468)
.+++.. ++++|+|+......-. ... +...-+ ...-.=.+.||.+...++|+.+-. +|=++|.
T Consensus 86 ~~~~~~--~~~~L~I~~~~~~~~~-~~~--~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~--~G~i~i~ 147 (166)
T PF13349_consen 86 KPEISV--EGGTLTIKSKDRESFF-FKG--FNFNNS-DNKSKITIYLPKDYKLDKIDIKTS--SGDITIE 147 (166)
T ss_pred EEEEEE--cCCEEEEEEecccccc-cce--EEEccc-CCCcEEEEEECCCCceeEEEEEec--cccEEEE
Confidence 455555 6788998766211000 001 111111 234445677777776667777665 5666654
No 52
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=26.65 E-value=52 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.1
Q ss_pred eecchhHHHHHHHHHHHHHHh
Q 046062 445 VVAGSALLVSLIVLVFQLIRA 465 (468)
Q Consensus 445 ~~~gs~llv~~i~lv~~~ir~ 465 (468)
-+||..|+|.+-.-+|+|||.
T Consensus 24 ~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 368888999888999999985
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=26.63 E-value=95 Score=24.99 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.0
Q ss_pred eEEEEEECCCCCccCCcEEEeeCCCcEEEEEccCc
Q 046062 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKS 129 (468)
Q Consensus 95 sFsRSFtLPddVD~DKIKAKYkNENGVLTITLPKk 129 (468)
.|.=.+.|| +|+.+.|+-.+. +++|+|+-=+.
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~--~~~L~I~g~~~ 42 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYK--DGYLTISAKRD 42 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEE--CCEEEEEEEEc
Confidence 455568899 699999999998 79999976553
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.84 E-value=39 Score=30.63 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=10.7
Q ss_pred ecchhHHHHHHHHHHHHHHhh
Q 046062 446 VAGSALLVSLIVLVFQLIRAK 466 (468)
Q Consensus 446 ~~gs~llv~~i~lv~~~ir~~ 466 (468)
||=.+-++.+|+|++.+||.|
T Consensus 71 ~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 343444455555555555544
No 55
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=25.59 E-value=1e+02 Score=25.24 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=28.2
Q ss_pred ceEEEEEECCCCCccCCcEEEeeCCCcEEEEEccCcCC
Q 046062 94 RAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVK 131 (468)
Q Consensus 94 GsFsRSFtLPddVD~DKIKAKYkNENGVLTITLPKkEe 131 (468)
+.|.=.+.|| +++.+.|+-.+. ++.|+|+--+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~--~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVE--NNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEE--CCEEEEEEEEccc
Confidence 3566678999 699999999998 7999999665443
No 56
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=24.60 E-value=1.3e+02 Score=24.39 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=25.2
Q ss_pred eEEEEEECCCCCccCCcEEEeeCCCcEEEEEccC
Q 046062 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128 (468)
Q Consensus 95 sFsRSFtLPddVD~DKIKAKYkNENGVLTITLPK 128 (468)
.|.=.+.|| +|+.+.|+-.+.+ |++|+|+--+
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~-~~~L~I~g~~ 41 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVED-GRVLRISGER 41 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeC-CCEEEEEEEe
Confidence 455568898 6999999999973 4699998654
No 57
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.57 E-value=35 Score=29.28 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=7.0
Q ss_pred HHHHHHHHhhc
Q 046062 457 VLVFQLIRAKK 467 (468)
Q Consensus 457 ~lv~~~ir~~k 467 (468)
||++.||+.||
T Consensus 85 ~l~w~f~~r~k 95 (96)
T PTZ00382 85 FLCWWFVCRGK 95 (96)
T ss_pred HHhheeEEeec
Confidence 66666776554
No 58
>PF12669 P12: Virus attachment protein p12 family
Probab=23.75 E-value=72 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=10.8
Q ss_pred eeecchhHHHHHHHHHHHHHHhhc
Q 046062 444 LVVAGSALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 444 l~~~gs~llv~~i~lv~~~ir~~k 467 (468)
+|+|+-.+++.+.+++.+++|.+|
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444333333223466666655
No 59
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=23.65 E-value=1.3e+02 Score=24.52 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=25.7
Q ss_pred eEEEEEECCCCCccCCcEEEeeCCCcEEEEEcc
Q 046062 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMP 127 (468)
Q Consensus 95 sFsRSFtLPddVD~DKIKAKYkNENGVLTITLP 127 (468)
.|.=.+.|| +++.+.|+-++. +|.|+|+-=
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~--~~~L~I~g~ 37 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVL--GDFVEIHGK 37 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEE--CCEEEEEEE
Confidence 466678998 799999999998 799999863
No 60
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=23.63 E-value=1.1e+02 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=26.0
Q ss_pred eEEEEEECCCCCccCCcEEEeeCCCcEEEEEccC
Q 046062 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128 (468)
Q Consensus 95 sFsRSFtLPddVD~DKIKAKYkNENGVLTITLPK 128 (468)
.|.=.+.|| +++.+.|+-.+. +|.|+|+-=+
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~--~~~L~I~ge~ 38 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVF--EGWLLIKGQH 38 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEE--CCEEEEEEEE
Confidence 455678898 799999999998 7999999644
No 61
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.29 E-value=74 Score=26.83 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 046062 450 ALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 450 ~llv~~i~lv~~~ir~~k 467 (468)
.++|+.|.|++||+..+|
T Consensus 14 ~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 14 MIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 578999999999997665
No 62
>PF15102 TMEM154: TMEM154 protein family
Probab=23.03 E-value=18 Score=33.98 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=0.0
Q ss_pred CeeecchhHHHHHHHHHHHHHHhhcC
Q 046062 443 PLVVAGSALLVSLIVLVFQLIRAKKR 468 (468)
Q Consensus 443 pl~~~gs~llv~~i~lv~~~ir~~k~ 468 (468)
|| +-+..||+++||||++|-|.|-+
T Consensus 64 P~-VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 64 PL-VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HH-HHHHHHHHHHHHheeEEeecccC
No 63
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=23.00 E-value=1.2e+02 Score=25.11 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=25.8
Q ss_pred eEEEEEECCCCCccCCcEEEeeCCCcEEEEEccC
Q 046062 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128 (468)
Q Consensus 95 sFsRSFtLPddVD~DKIKAKYkNENGVLTITLPK 128 (468)
+|.=.+.|| +++.+.|+-++. ||.|+|+-=+
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~--~~~L~I~g~~ 38 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTV--DNLLEVSARH 38 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEE--CCEEEEEEEE
Confidence 455678898 799999999998 7999998644
No 64
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=22.99 E-value=1.2e+02 Score=25.00 Aligned_cols=30 Identities=10% Similarity=0.105 Sum_probs=25.5
Q ss_pred eEEEEEECCCCCccCCcEEEeeCCCcEEEEEcc
Q 046062 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMP 127 (468)
Q Consensus 95 sFsRSFtLPddVD~DKIKAKYkNENGVLTITLP 127 (468)
.|.=.+.|| +++.+.|+-+.. +|+|+|+--
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~--~~~L~I~g~ 40 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVL--DDYVEIHGK 40 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEE--CCEEEEEEE
Confidence 456678898 799999999998 799999964
No 65
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=20.91 E-value=1.1e+02 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHHHhhc
Q 046062 447 AGSALLVSLIVLVFQLIRAKK 467 (468)
Q Consensus 447 ~gs~llv~~i~lv~~~ir~~k 467 (468)
|||.-+.+|+.|..-.+|.||
T Consensus 2 GGSlGwl~LllL~~~~~rRr~ 22 (26)
T TIGR03501 2 GGSLGWLSLLLLLLLGLRRRR 22 (26)
T ss_pred cchHHHHHHHHHHHHHHHHhh
Confidence 788777777666655555553
No 66
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=20.61 E-value=80 Score=24.45 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=15.8
Q ss_pred ecchhHHHHHHHHHHHHHHh
Q 046062 446 VAGSALLVSLIVLVFQLIRA 465 (468)
Q Consensus 446 ~~gs~llv~~i~lv~~~ir~ 465 (468)
+|..++..+++..+||||++
T Consensus 15 l~~~~~~~~~~~~~~Hyi~v 34 (44)
T PF09163_consen 15 LGAAGMGATAAAGFFHYITV 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35566777888899999986
Done!