RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 046062
(468 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 53.3 bits (129), Expect = 4e-09
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
ETD +++ L GF++E+I + + + ISG++ +E ++ + E +F
Sbjct: 4 ETDDAYVVEADLPGFKKEDIKVEVE--DGVLTISGEREEEEEEEENYLRR--ERSYGSFS 59
Query: 98 KVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
+ F++P V DK+KA LTI +PK
Sbjct: 60 RSFRLPEDVDPDKIKASLENGV--LTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 48.7 bits (117), Expect = 1e-07
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
+TD + ++T L G ++E+I + + + + + ISGK+ +E ++E F
Sbjct: 3 QTDDEVVVTVDLPGVKKEDIKVEVED--NVLTISGKREEEE---------ERERSYGEFE 51
Query: 98 KVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
+ F++P V +K KA E L I +PK
Sbjct: 52 RSFELPEDVDPEKSKASL--ENGVLEITLPK 80
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 52.5 bits (125), Expect = 5e-07
Identities = 60/291 (20%), Positives = 118/291 (40%), Gaps = 16/291 (5%)
Query: 139 EEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAE 198
E K +E + EA K + + K A + E +A + E EEK + + +
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 199 EPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESK 258
+ ++ + A E+ + + AEE + A+ + + ++ E+ K
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Query: 259 GPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPR 318
E K K E + A+E+ + E E K E + +E K+ +KA E +
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAE---EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Query: 319 FEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEEL 378
+A E+ E K A + E++K ++ +K E ++ +E
Sbjct: 1490 KKAE----------EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
Query: 379 TKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQ 429
K EE + +E + E++ +EEK +E+++ E+ K ++ A A+
Sbjct: 1540 KKAEE---KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Score = 48.2 bits (114), Expect = 9e-06
Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 17/310 (5%)
Query: 142 KEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPA 201
K+ E + EA K E+ + K ADE+ + K +E +K EEK+ +A++ A
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKK---ADELKKAAAAKKK-ADEAKKKAEEKKKADEAKKKA 1440
Query: 202 NDQRTFETTESAAEEI--PENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKG 259
+ + + + AEE E K + AEE E++ A+ E ++ + K
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKK-AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499
Query: 260 PEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPRF 319
E K E ++ A+E+ E + +AE +K + + E K+ +KA E +
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
Query: 320 EAHVPGPEMAKTIESGDD----QGSLSTQVEEKHTAS--KDHHRMESEKPEDLRKQEPCQ 373
E AK E + + + + EE K + + K E+ +K E +
Sbjct: 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
Query: 374 -EVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQ---KGISEDAAAAAQ 429
+ EEL K EE + E + + E + +EE +E +++ K ED A +
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
Query: 430 MKKHVSKKSK 439
KK + K
Sbjct: 1680 AKKAEEDEKK 1689
Score = 47.8 bits (113), Expect = 1e-05
Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 19/305 (6%)
Query: 147 DRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAA-PKEEIIEKIEEKQDPGQAEEPANDQR 205
D G+ + + + ADE E+ KA K+ K EE + +A++ A D R
Sbjct: 1069 DEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDAR 1128
Query: 206 TFETTESA-----------AEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIR 254
E A AE+ AE+ E+R E+ +AE R + +R
Sbjct: 1129 KAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR 1188
Query: 255 EESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKA 314
K E++ E+ + E + + + K + EE K+ +KA
Sbjct: 1189 ---KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKA 1245
Query: 315 PEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQE 374
E R + E A+ Q ++ + EE A + E +K ++ +K E ++
Sbjct: 1246 EEERNNEEIRKFEEARMAHFARRQAAI--KAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
Query: 375 VEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHV 434
+E K E + + +E + E + ++++EE +K ++ A AA +
Sbjct: 1304 ADEAKKKAE--EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Query: 435 SKKSK 439
+++
Sbjct: 1362 AEEKA 1366
Score = 42.4 bits (99), Expect = 5e-04
Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 15/311 (4%)
Query: 139 EEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAE 198
E K +E + EA K ++ + A + E + A K + +K EE + +A+
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Query: 199 EPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESK 258
+ ++ E + AEE+ + + + AEE E + + E ++ E+ EE
Sbjct: 1541 KAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
Query: 259 G---PEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAP 315
E K K E + AEE+ + E + E K E L+ +E +++ EE
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Query: 316 EPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESE--KPEDLRKQ--EP 371
E K E E++ A++ + E K E+L+K+ E
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Query: 372 CQEVEELTKPEE--PCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQ 429
++ EEL K EE + E ++ + ++ + E K DE+E +++ K E A +
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
Query: 430 MKKHVSKKSKV 440
+K + ++
Sbjct: 1775 KEKEAVIEEEL 1785
Score = 42.1 bits (98), Expect = 7e-04
Identities = 62/330 (18%), Positives = 124/330 (37%), Gaps = 16/330 (4%)
Query: 126 MPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEII 185
M + + + EE ++ + + E E + + + +K +A +E
Sbjct: 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK 1321
Query: 186 EKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAE 245
+K EE + A + ++ + AE + E AEEK + E + E +A+
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 246 -----TERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEA---EISKITE 297
E ++ + K E K K + + A + + + K + + E K E
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
Query: 298 PLQTEETWKERLPEEKAPE---PRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKD 354
+ + K++ E K E + E E K E + EE + +
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 355 HHRMESE--KPEDLRKQEPCQEVEELTKPEEPCQVPE---PEETPQPNEIEPSEEKPDEQ 409
+ K ++ +K E ++ +E K EE + E EE + +E++ +EE +
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
Query: 410 ESEELEKQKGISEDAAAAAQMKKHVSKKSK 439
E ++ E+ K ED A + + K +
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Score = 38.6 bits (89), Expect = 0.007
Identities = 62/259 (23%), Positives = 105/259 (40%), Gaps = 18/259 (6%)
Query: 139 EEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAE 198
EE+K+ E + EA ED M A+E K +A +E + EEK+ +
Sbjct: 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEA--KKAEEARIEEVMKLYEEEKKMKAEEA 1612
Query: 199 EPANDQRTFETTESAAEEI---PENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIRE 255
+ A + + AEE E K + AEEK E + E + + + E
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 256 ES-KGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKA 314
+ K E K EE+E+ A E+ + EAE +K E L+ +E +++ EE
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKK----------EAEEAKKAEELKKKEAEEKKKAEELK 1722
Query: 315 PEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQE 374
E + E AK D + + + +E+ H + E EK + ++E
Sbjct: 1723 KAE--EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
Query: 375 VEELTKPEEPCQVPEPEET 393
+EE E+ + E ++
Sbjct: 1781 IEEELDEEDEKRRMEVDKK 1799
Score = 38.6 bits (89), Expect = 0.009
Identities = 58/305 (19%), Positives = 117/305 (38%), Gaps = 4/305 (1%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPK--EEIIEKIEEKQDPG 195
EE ++ E + EA+ K E+ + A + E+ N+ K E + +Q
Sbjct: 1214 AEEARKAEDAKKA-EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI 1272
Query: 196 QAEEPANDQRTFETTE-SAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIR 254
+AEE + E A+E + + + A+E E + A+ + E ++
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 255 EESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKA 314
K E K AE E +++ EA K E + + K++ E+K
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Query: 315 PEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQE 374
+ + + A ++ + + ++K K + + E + E ++
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Query: 375 VEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHV 434
EE K EE + E + + + E K ++ ++ E+ K +++A AA+ KK
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
Query: 435 SKKSK 439
+ K
Sbjct: 1513 DEAKK 1517
Score = 35.5 bits (81), Expect = 0.070
Identities = 60/259 (23%), Positives = 98/259 (37%), Gaps = 22/259 (8%)
Query: 185 IEKIEE-----KQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLE 239
IEKIEE D E+ D+ E AE G+ EG + + + E
Sbjct: 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKE 1085
Query: 240 NGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPL 299
+ E EE+K E EE R AEE+ + E + K E
Sbjct: 1086 DNRADEATEEAFGKAEEAKKTETGKAEE-ARKAEEAKKKAE----------DARKAEEAR 1134
Query: 300 QTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRME 359
+ E+ K KA + + E A+ E + + + E A + E
Sbjct: 1135 KAEDARKAE-EARKAEDAKRVEIARKAEDARKAEEA-RKAEDAKKAEAARKAEEVRKAEE 1192
Query: 360 SEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEE-KPDEQESEELEKQK 418
K ED RK E ++ EE K EE + E+ + ++ +EE K D +E+++ E+++
Sbjct: 1193 LRKAEDARKAEAARKAEEERKAEE---ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
Query: 419 GISEDAAAAAQMKKHVSKK 437
E H +++
Sbjct: 1250 NNEEIRKFEEARMAHFARR 1268
Score = 34.3 bits (78), Expect = 0.15
Identities = 62/303 (20%), Positives = 120/303 (39%), Gaps = 24/303 (7%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQA 197
EE ++ E + A E + + + E K +AA K E K EE +
Sbjct: 1166 AEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKA--EAARKAEEERKAEEARK---- 1219
Query: 198 EEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREES 257
A D + E + A E + + + AEE+ + E R E A R + I+ E
Sbjct: 1220 ---AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
Query: 258 KGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEP 317
K + + AEE E ++ +A+ +K + EE K ++KA E
Sbjct: 1277 A-----RKADELKKAEEKKKADEAKKAEEKKKADEAK----KKAEEAKKADEAKKKAEEA 1327
Query: 318 RFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEE 377
+ +A + AK + + + + E + A + E + + +K+E ++ +
Sbjct: 1328 KKKA-----DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Query: 378 LTK-PEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHVSK 436
K EE + E ++ + ++ + E K ++ ++ K +E+ A + KK +
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
Query: 437 KSK 439
K
Sbjct: 1443 AKK 1445
Score = 32.0 bits (72), Expect = 0.81
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 17/214 (7%)
Query: 138 IEEVKEEEVDRGMP----EAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKI----- 188
EE K+ E D+ M E K E+ ++ V EK K+ KI
Sbjct: 1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
Query: 189 -----EEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAE 243
E+K+ ++ A +++ E + A EE E + + D ++ + E
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 244 AETERVEQTIREES---KGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQ 300
E + E +E K E+K KE E+ E + E + EA+ + +
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
Query: 301 TEETWKERLPEEKAPEPRFEAHVPGPEMAKTIES 334
EE K+ ++K + E E+ K E+
Sbjct: 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 50.0 bits (119), Expect = 2e-06
Identities = 62/291 (21%), Positives = 97/291 (33%), Gaps = 18/291 (6%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQA 197
+ ++ + +V E+ E A E E+ +A + E K E + +
Sbjct: 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Query: 198 EEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREES 257
E +Q E A+E G+TE AEE GE+ E E E E+ E
Sbjct: 687 AERKGEQE--GEGEIEAKEADHKGETE-AEEVEHEGETEAEGTEDEGEIETGEEGEEVED 743
Query: 258 KGP-EVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQ-------TEETWKERL 309
+G E + K E E + E + E E + + K
Sbjct: 744 EGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEH 803
Query: 310 PEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQ 369
E + E A E D+ G E + A +D ++ D
Sbjct: 804 EGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDS 863
Query: 370 EPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGI 420
E +E EE + EE EE + E E E+P E E +++ I
Sbjct: 864 EEEEEEEEEEEEEE-------EEEEEEEEEEEENEEPLSLEWPETRQKQAI 907
Score = 36.5 bits (84), Expect = 0.035
Identities = 59/259 (22%), Positives = 92/259 (35%), Gaps = 19/259 (7%)
Query: 181 KEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGG--ESRPL 238
K ++ E + G+ E + ES E E E + +G R
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKG 691
Query: 239 ENGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEP 298
E E E E E + E++ EV+ + E E E G ET + E E E
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG 751
Query: 299 LQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDD--------QGSLSTQVEEKHT 350
ET +R +E E EA E I++G+D E
Sbjct: 752 KHEVETEGDR--KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEA 809
Query: 351 ASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPN------EIEPSEE 404
KD H +SE D + + +EL E + + E+ + E EE
Sbjct: 810 GEKDEHEGQSETQADDTEVKDETGEQELNA-ENQGEAKQDEKGVDGGGGSDGGDSEEEEE 868
Query: 405 KPDEQESEELEKQKGISED 423
+ +E+E EE E+++ E+
Sbjct: 869 EEEEEEEEEEEEEEEEEEE 887
Score = 34.2 bits (78), Expect = 0.15
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 133 HSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQ 192
H G E KE+E D G +A ED EMK ++G E E E+ +
Sbjct: 766 HEGETEAEGKEDE-DEGEIQAG---EDGEMKG-------DEGAEGKVEHEGETEAGEKDE 814
Query: 193 DPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQT 252
GQ+E A+D + T G+ + E+ DGG + E E E E+
Sbjct: 815 HEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEE 874
Query: 253 IREESKGPEVKSKEENE 269
EE + E + +EENE
Sbjct: 875 EEEEEEEEEEEEEEENE 891
Score = 31.9 bits (72), Expect = 0.87
Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 6/185 (3%)
Query: 131 KGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEE 190
H G E E+E + E +++ED E ++ + E + E
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEG 774
Query: 191 KQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVE 250
K+D + E A + + E A ++ G+TE E+ G+S + E + E E
Sbjct: 775 KEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGE 834
Query: 251 QTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLP 310
Q + E++G E K E+ S G + E E + E + EE +E
Sbjct: 835 QELNAENQG-EAKQDEKGVDGGGGSDG-----GDSEEEEEEEEEEEEEEEEEEEEEEEEE 888
Query: 311 EEKAP 315
E + P
Sbjct: 889 ENEEP 893
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 43.5 bits (103), Expect = 3e-05
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAF 96
EETD ++ +T L G +E+I+I + + + I G++ +E ++E F
Sbjct: 46 EETDDEYRITAELPGVDKEDIEITVEG--NTLTIRGERE-EEEEEEEEGYLRRERAYGEF 102
Query: 97 RKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
+ F++P V + +KAK+ LT+ +PK
Sbjct: 103 ERTFRLPEKVDPEVIKAKYKNGL--LTVTLPK 132
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 40.5 bits (94), Expect = 0.002
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 7/154 (4%)
Query: 281 TVSSKPDGEAEISKITEP-LQTEETWKERL-PEEKAPEPRFEAHVPGPEMAKTIESGDDQ 338
++ P+G + S+ +P +Q E ++ + P++ P E P A E Q
Sbjct: 372 VIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431
Query: 339 GSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNE 398
+ E+ + + + Q ++ E Q P+P E E
Sbjct: 432 PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE 491
Query: 399 IEPSEE-----KPDEQESEELEKQKGISEDAAAA 427
EP E +P EE+E+++ + AA
Sbjct: 492 PEPVVEETKPARPPLYYFEEVEEKRAREREQLAA 525
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 38.7 bits (91), Expect = 0.006
Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 12/186 (6%)
Query: 89 KEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDR 148
+V + K + + +L+K+K + VK HS V EE +E +
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKE------------LGIEVKSHSSTVEEEEARKEEAK 49
Query: 149 GMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFE 208
E K E E A+E + AAP EE E + + E +
Sbjct: 50 REAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEA 109
Query: 209 TTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEEN 268
+ K +K + + + + K ++
Sbjct: 110 AARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPT 169
Query: 269 ERVAEE 274
E++ E
Sbjct: 170 EKIPRE 175
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 37.7 bits (87), Expect = 0.011
Identities = 27/173 (15%), Positives = 45/173 (26%), Gaps = 8/173 (4%)
Query: 258 KGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPL-QTEETWKERLPEEKAPE 316
KG E + E A + P+ E + + E E
Sbjct: 277 KGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAE 336
Query: 317 PRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVE 376
E ++ D G + VEE A +E E+P DL Q P
Sbjct: 337 VAEVTDEVAAESV--VQVADRDGESTPAVEETSEAD-----IEREQPGDLAGQAPAAHQV 389
Query: 377 ELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQ 429
+ + P + +E EP + + + +
Sbjct: 390 DAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPA 442
Score = 37.3 bits (86), Expect = 0.018
Identities = 35/171 (20%), Positives = 50/171 (29%), Gaps = 20/171 (11%)
Query: 158 EDPEM---KPVAADEVPEKG-TNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESA 213
E P DE E+ AA PG+ +P D
Sbjct: 280 EAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQP--DDVAEAVKAEV 337
Query: 214 AEEIPENGKTEGAEEKFDGGESRP-LENGAEAETERVE--QTIREESKGPEVKSKEE--- 267
AE E + GES P +E +EA+ ER + + +V ++
Sbjct: 338 AEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAA 397
Query: 268 -NERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEP 317
E A S ET P+ A I +P E +P
Sbjct: 398 PEEPAALASEAHDETEPEVPEKAAPIPDPAKP-------DELAVAGPGDDP 441
Score = 31.9 bits (72), Expect = 0.78
Identities = 28/148 (18%), Positives = 41/148 (27%), Gaps = 17/148 (11%)
Query: 197 AEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREE 256
+E E E AA + A GE N + E V+ + E
Sbjct: 292 VDEALER----EPAELAAAAV---ASAASAVGPVGPGEP----NQPDDVAEAVKAEVAEV 340
Query: 257 SKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPL-----QTEETWKERLPE 311
+ +S + ES E +S+ D E E Q + PE
Sbjct: 341 TDEVAAESVVQVADRDGESTPAVEE-TSEADIEREQPGDLAGQAPAAHQVDAEAASAAPE 399
Query: 312 EKAPEPRFEAHVPGPEMAKTIESGDDQG 339
E A PE+ + D
Sbjct: 400 EPAALASEAHDETEPEVPEKAAPIPDPA 427
Score = 31.5 bits (71), Expect = 1.00
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 17/175 (9%)
Query: 258 KGPEVKSKEENERVAEESPGRTETVSSK---PDGEAEISKITEPLQTEETWKERLPEEKA 314
+G E E ER E ++ P G E ++ + + + + +E A
Sbjct: 286 RGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVA 345
Query: 315 PEPRFEAHVPGPEMAKTIESGDD-------QGSLSTQVEEKHTASKDHHRMESEKPEDLR 367
E + E +E + G L+ Q H + E+P L
Sbjct: 346 AESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALA 405
Query: 368 KQEPCQEVEELTKPEEPCQVPEPEETP-QPNEIEPSEEKPDEQESEELEKQKGIS 421
+ + T+PE P + P P +P+E+ + D E + + +Q S
Sbjct: 406 SEAH-----DETEPEVP-EKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFS 454
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 36.5 bits (85), Expect = 0.030
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 381 PEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAA 427
P+ P + P P P ++ +P E++ ++ ++E+ ++ + E AA
Sbjct: 262 PQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAA 308
Score = 29.6 bits (67), Expect = 4.3
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 381 PEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISED----AAAAA 428
P P P EE P P ++ P E E E+ + + E+ A AA
Sbjct: 259 PAPP--QPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAA 308
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 35.2 bits (80), Expect = 0.080
Identities = 53/289 (18%), Positives = 105/289 (36%), Gaps = 17/289 (5%)
Query: 140 EVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIE-KIEEKQDPGQAE 198
E +++ D + + I P ++ A EV + + +E + E K EE+ P Q
Sbjct: 241 EPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEPQPTQTV 300
Query: 199 EPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESK 258
E T E EI N T+ + + + P+E + + + V+Q E K
Sbjct: 301 ETKPTSAPESTVEENLPEI--NQPTQAVQPTSETISTTPVEPTDQLKPKEVDQIQEELKK 358
Query: 259 GPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPR 318
E++ +E + + + + + ++ EP + E W ++ +
Sbjct: 359 TKEIEVEELPTKKNDLVEINFDDLEELKFELVQTNQEKEPEKAVENWATDYQLDEPTQSN 418
Query: 319 FEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASK---DHHRMESEKPEDLRKQEPCQEV 375
+ + E K +E + EE + + + +ES PED + +E
Sbjct: 419 IDWY--KQEDPKDLEQLVQDQATLEITEENQISPEPVEEQPSVESTAPEDQVVEAIKEEE 476
Query: 376 EELTKPE---------EPCQVPEPEETPQPNEIEPSEEKPDEQESEELE 415
E L + + +P EE P + +P+E E+
Sbjct: 477 ELLEQKKAAEFAELFGQPTPTTSIEELLNPEQTQPTEFDEIIIENNLDN 525
Score = 31.3 bits (70), Expect = 1.2
Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 11/214 (5%)
Query: 124 IFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAA----------DEVPEK 173
I P + I E D+ P+ +D+I++ K D V
Sbjct: 319 INQPTQAVQPTSETISTTPVEPTDQLKPKEVDQIQEELKKTKEIEVEELPTKKNDLVEIN 378
Query: 174 GTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGG 233
+ K E+++ +EK+ E A D + E T+S + + + + D
Sbjct: 379 FDDLEELKFELVQTNQEKEPEKAVENWATDYQLDEPTQSNIDWYKQEDPKDLEQLVQDQA 438
Query: 234 ESRPLENGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEIS 293
E + EQ E + PE + E + E + ++ G+ +
Sbjct: 439 TLEITEENQISPEPVEEQPSVESTA-PEDQVVEAIKEEEELLEQKKAAEFAELFGQPTPT 497
Query: 294 KITEPLQTEETWKERLPEEKAPEPRFEAHVPGPE 327
E L E + +E E + +
Sbjct: 498 TSIEELLNPEQTQPTEFDEIIIENNLDNVSVADD 531
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 34.0 bits (78), Expect = 0.18
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 381 PEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISED 423
PE Q P P P+P E E ++PD+ + ++ E+ I E+
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 29.0 bits (65), Expect = 5.7
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 362 KPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQ-PNEIEPSEEKPDEQESEEL 414
P R EP + P EP PEPEE P P++ +P + + +Q EEL
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEP---PEPEEEPDEPDQTDPDDGEETDQIPEEL 310
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 31.3 bits (72), Expect = 0.19
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIR 94
V + D KF +T +KGF+ E + + ++ +K+ + GK +E + R
Sbjct: 1 VVNDDDEKFQVTLDVKGFKPEELKVKVS--DNKLVVEGKHEERE--------DEHGYVSR 50
Query: 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
F + +Q+P GV D V + + + LTI PK
Sbjct: 51 EFTRRYQLPEGVDPDSVTSSLSSDGV-LTIEAPK 83
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 33.5 bits (77), Expect = 0.26
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 356 HRMES---EKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESE 412
HR E+P+ +++ ++ EE E E + P+ DE+E +
Sbjct: 307 HRRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPD 366
Query: 413 ELEKQKGISEDAAAAAQ 429
E+ G A
Sbjct: 367 PQEEADGQGSSTDPAGD 383
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 33.2 bits (75), Expect = 0.39
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 116 NEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGT 175
N+E N +P+ +K H+ IEE EE V+ E +++ + ++ + V E
Sbjct: 925 NKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEEN-- 982
Query: 176 NKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGES 235
+E + E +EE + E ++ E E EE E E EE + E
Sbjct: 983 ----VEENVEENVEENVEENVEENI--EENVEENVEENIEENVEEYDEENVEEVEENVEE 1036
Query: 236 RPLENGAEAE---TERVEQTIREESKGPEVKSKEENERVAEES 275
EN E E E VE+ I E + + ++ EE E EE+
Sbjct: 1037 YDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEEN 1079
Score = 32.5 bits (73), Expect = 0.65
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQA 197
+EE EE ++ + E +++ + ++ + V E N EE +E+IEE +
Sbjct: 995 VEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVE 1054
Query: 198 EE-----PANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQT 252
E D+ E E EE E E EE + E EN E E E+
Sbjct: 1055 ENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEEN 1114
Query: 253 IREESKGPEVKSKEENERVAEE 274
E ++ + ++ EE+ +E
Sbjct: 1115 AEENAEEYDDENPEEHNEEYDE 1136
Score = 30.1 bits (67), Expect = 3.2
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQA 197
+EE EE V+ + E +++ + ++ + V E +E + E EE + +
Sbjct: 975 VEENVEENVEENVEENVEENVEENVEENIEENVEENVEENI--EENVEEYDEENVEEVEE 1032
Query: 198 EEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREES 257
D+ E E AEE E E EE + EN E E VE+ + E
Sbjct: 1033 NVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENV 1092
Query: 258 KGPEVKSKEENERVAEES 275
+ E +E E AEE+
Sbjct: 1093 EEIEENVEENVEENAEEN 1110
Score = 29.4 bits (65), Expect = 6.1
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQA 197
+EE EE V+ + E +++ + ++ + V E +E E +EE ++ +
Sbjct: 979 VEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDE--ENVEEVEENVEE 1036
Query: 198 EEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREES 257
+ N + E E EE E E EE + E EN E E VE+ + E
Sbjct: 1037 YDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIE 1096
Query: 258 KGPEVKSKEENERVAEES 275
+ E +E E AEE+
Sbjct: 1097 ENVEENVEENAEENAEEN 1114
>gnl|CDD|234979 PRK01749, PRK01749, disulfide bond formation protein B;
Provisional.
Length = 176
Score = 31.4 bits (72), Expect = 0.50
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 444 LVVAGSA-LLVSLIVLVFQLIRAKKR 468
LVV +A L+V+++VL+ Q +AKKR
Sbjct: 147 LVVIFAAYLVVAVLVLISQFFKAKKR 172
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 30.3 bits (69), Expect = 0.62
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
E F++ + GF+ E + + + +++ + GK +E G E R+F
Sbjct: 4 EDKDAFVVKLDVPGFKPEELKVKVE--DNRVLVKGKHEKEEEDDHGLR---SERSYRSFS 58
Query: 98 KVFQIPNGVILDKVKAKFNE 117
+ F +P DKVKA +
Sbjct: 59 RKFVLPENADPDKVKASLKD 78
>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1747
Score = 31.7 bits (72), Expect = 1.2
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 3/118 (2%)
Query: 165 VAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPEN--GK 222
V D A E + ++ ++ +A ++R E AE P+ GK
Sbjct: 1620 VWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGK 1679
Query: 223 TEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTE 280
TE A G E R +E E E +RE + E + E + E + E
Sbjct: 1680 TEQAVRDIAGQE-RDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQME 1736
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 30.9 bits (70), Expect = 1.2
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 337 DQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQP 396
+E A E P + + EP E+ P EP PEP P+P
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPT-PPKP 84
Query: 397 NEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHVSKKSK 439
E E+KP + + + K K + K +K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.4 bits (71), Expect = 1.2
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 172 EKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFD 231
K T A E K E Q AE N + E + A + ++
Sbjct: 332 IKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLI 391
Query: 232 GGESRPLENGAEAETE-RVEQTIREESKGP 260
E++ Q + P
Sbjct: 392 DASPNEDTPSENEESKGSPPQVEATTTAEP 421
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 30.7 bits (69), Expect = 1.3
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 6/142 (4%)
Query: 143 EEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPAN 202
EEEV + ++KI + + + P K K + E +++Q+ +A +
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEE----DGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHE 157
Query: 203 DQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAE--AETERVEQTIREESKGP 260
+ E A E + E A E+ + P+E AET+ V + +E P
Sbjct: 158 ETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNP 217
Query: 261 EVKSKEENERVAEESPGRTETV 282
SK E +A+E + V
Sbjct: 218 VEDSKAIKEELAKEPVEEQQEV 239
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.1 bits (70), Expect = 1.5
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 8/158 (5%)
Query: 138 IEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQ- 196
+ ++KE E A E+ + K + AD+ +K ++ +++ +KQ +
Sbjct: 200 MTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKN 259
Query: 197 AEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREE 256
+PA+ E + A + E K + +K D + + ++Q +
Sbjct: 260 LPKPADTSSPKEDKQVAENQKREIEKAQIEIKKND----EEALKAKDHKAFDLKQESKAS 315
Query: 257 SKGPEVKSKE---ENERVAEESPGRTETVSSKPDGEAE 291
K E K E + E VAE+ V ++P E
Sbjct: 316 EKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNE 353
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 1.6
Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 33/303 (10%)
Query: 139 EEVKEEEVD--RGMPEAIDKIEDPE-MKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPG 195
+E++ + + P + ++ PE +K + K ++ E ++ +E+ D
Sbjct: 3967 DEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEAD-A 4025
Query: 196 QAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIRE 255
+ +EP D+ E + E+I ++ ++ AE+ E EN E E
Sbjct: 4026 EKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQE----------NE 4075
Query: 256 ESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAP 315
ES VKS EE E+ + + + P +A+ + + E T K + E
Sbjct: 4076 ESTEDGVKSDEELEQGEVPE---DQAIDNHPKMDAKSTFASAEADEENTDKGIVGE--NE 4130
Query: 316 EPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASK------DHHRMESEKPEDLRKQ 369
E E V G A E Q ST E A + DH R + +
Sbjct: 4131 ELGEEDGVRGNGTADG-EFEQVQEDTSTPKEAMSEADRQYQSLGDHLREWQQANRIHEWE 4189
Query: 370 EPCQEVEELTKPEEPCQVPEPEET-------PQPNEIEPSEEKPDEQESEELEKQKGISE 422
+ + + E V E EE + ++I+ + ++ + I+E
Sbjct: 4190 DLTESQSQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAE 4249
Query: 423 DAA 425
D A
Sbjct: 4250 DEA 4252
Score = 30.7 bits (69), Expect = 2.0
Identities = 44/242 (18%), Positives = 85/242 (35%), Gaps = 39/242 (16%)
Query: 137 VIEEVKEEEVDRGMPEAIDKIED-PEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPG 195
V+ E + + + + +++ D PE + +E P EE + + E+K +
Sbjct: 3872 VVSENENSDSEEENQDLDEEVNDIPEDLSNSLNE-----KLWDEPNEEDLLETEQKSNEQ 3926
Query: 196 QAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGG---ESRPLE------NGAEAET 246
A +D + E A E+ K + E D G E +P E E
Sbjct: 3927 SAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED 3986
Query: 247 ERVEQTIREESKGPEV---------------KSKEE-----NERVAEESPGRTETVSSKP 286
+ + ++ + K +V ++KEE +E + +E P +
Sbjct: 3987 LDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDED 4046
Query: 287 DGEAEISKITEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVE 346
+ + S + E +E E EE E E+ G + + +E G+ +
Sbjct: 4047 IQQDDFSDLAE---DDEKMNEDGFEENVQENE-ESTEDGVKSDEELEQGEVPEDQAIDNH 4102
Query: 347 EK 348
K
Sbjct: 4103 PK 4104
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 30.5 bits (69), Expect = 2.0
Identities = 12/69 (17%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 350 TASKDHHRMESEKPEDLRKQEPCQE---VEELTKPEEPCQVPEPEETPQPNEIEPSEEKP 406
+SK + + + P + + ++E + +E Q+PE E+ P+ + E +
Sbjct: 413 VSSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKNETKDTAM 472
Query: 407 DEQESEELE 415
+E+ ++++
Sbjct: 473 EEEPQDKID 481
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 30.3 bits (68), Expect = 2.1
Identities = 26/187 (13%), Positives = 45/187 (24%), Gaps = 8/187 (4%)
Query: 181 KEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLEN 240
+ E + E+ G+ EE + +ES P AEE G
Sbjct: 68 QTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPS--GSAEELASGLSPENTSG 125
Query: 241 GAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQ 300
+ S + SP + + +P E + P
Sbjct: 126 SSPESPASHSPPPSPPSHPGPHEPAPPES--HNPSPNQQPSSFLQPSHEDSPEEPEPPTS 183
Query: 301 TEETWKERLPE----EKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHH 356
E P+ +P P+ PG + T + + E +
Sbjct: 184 EPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243
Query: 357 RMESEKP 363
Sbjct: 244 GPPFPGH 250
Score = 28.8 bits (64), Expect = 6.3
Identities = 41/221 (18%), Positives = 59/221 (26%), Gaps = 25/221 (11%)
Query: 197 AEEPANDQRTFETTESAA----EEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQT 252
A +PA T + A TE AEE G + + G
Sbjct: 43 AAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSG------ 96
Query: 253 IREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEE 312
E P E +A T S P+ A S P + PE
Sbjct: 97 -SESVGSPTPSPSGSAEELASGLSPE-NTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Query: 313 KAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPC 372
P P P + + E ++ T E +S P
Sbjct: 155 HNPSP---NQQPSSFLQPSHEDSPEEPEPPTSEPEP----------DSPGPPQSETPTSS 201
Query: 373 QEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEE 413
+ Q P P++ P PN + E + + E E
Sbjct: 202 PPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
>gnl|CDD|236550 PRK09529, PRK09529, bifunctional acetyl-CoA decarbonylase/synthase
complex subunit alpha/beta; Reviewed.
Length = 711
Score = 30.7 bits (70), Expect = 2.1
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 26/81 (32%)
Query: 124 IFMPKSVKGHSGVVIEEVKEEEVDR----GMPEAIDKIEDPEMKPVAADEVPEKGTNKAA 179
++MPK +K EE+K+ R G+P+ DKI D V E
Sbjct: 651 VWMPKELK-------EELKDRLNARAKEEGLPDFYDKIADET---VGTTE---------- 690
Query: 180 PKEEIIEKIEEKQDPGQAEEP 200
EEI+ +EEK P EP
Sbjct: 691 --EEILPFLEEKGHPALTMEP 709
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 30.6 bits (70), Expect = 2.2
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 6/111 (5%)
Query: 181 KEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLEN 240
K E+I I+E + G A A AA + E
Sbjct: 48 KGELIAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQP------AAEAAAAK 101
Query: 241 GAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAE 291
A R E+ ++ R E+ R + GE
Sbjct: 102 AEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQP 152
>gnl|CDD|162743 TIGR02172, Fb_sc_TIGR02172, Fibrobacter succinogenes paralogous
family TIGR02172. This model describes a paralogous
family of five proteins, likely to be enzymes, in the
rumen bacterium Fibrobacter succinogenes S85. Members
show homology to proteins described by pfam01636, a
phosphotransferase enzyme family associated with
resistance to aminoglycoside antibiotics. However,
members of this family score below the current trusted
and noise cutoffs for pfam01636.
Length = 226
Score = 29.7 bits (67), Expect = 2.3
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 292 ISKITEPLQTEETWK-ERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHT 350
+ K+ P +ET K E K F +P P +E G G + + K +
Sbjct: 26 MLKLYNPGFDKETIKREFDASRKV----FSLGIPTPHPFDLVEDGGRLGLIYELIVGKRS 81
Query: 351 ASKDHHRMESEKPEDL 366
S R+ S+ P L
Sbjct: 82 FS----RIISDNPSRL 93
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 30.2 bits (68), Expect = 2.4
Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 3/258 (1%)
Query: 127 PKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIE 186
+S K + +E++ + P+ K P+ + EK K EE +
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Query: 187 KIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAET 246
+ EEK+ + + + + +E PE K A + G+ + E E
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219
Query: 247 ERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWK 306
E + RE + P +E+ R + E R+ + KPD ++ ++ T
Sbjct: 220 EEDDGKDRETTTSPM---EEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTET 276
Query: 307 ERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDL 366
+ P R + P P K E + + + E E E+
Sbjct: 277 RPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENF 336
Query: 367 RKQEPCQEVEELTKPEEP 384
+ Q + + E+
Sbjct: 337 VVEAAAQAPDIVAGGEDE 354
Score = 30.2 bits (68), Expect = 2.7
Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 8/220 (3%)
Query: 152 EAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTE 211
EA+ ++E K AA P K + KEE EK + K++ + +E ++ +
Sbjct: 75 EAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Query: 212 SAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEENER- 270
A+E + E +EK E + + K P K KE E
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEE 194
Query: 271 -----VAEESPGRTETVSSKPDGE--AEISKITEPLQTEETWKERLPEEKAPEPRFEAHV 323
E G+ E + E + K E + E + +
Sbjct: 195 KQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLK 254
Query: 324 PGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKP 363
+ S T+ + + R S +P
Sbjct: 255 KPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARP 294
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 29.6 bits (66), Expect = 2.4
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 204 QRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVK 263
Q E EE+ E + E EEK D E + E E ER EQTI E+S E +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQ-----EEQEREREEQTIEEQSDDSEHE 179
Query: 264 SKEENERVAEESPGRTE 280
E++E E +TE
Sbjct: 180 IIEQDESETESDDDKTE 196
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 28.2 bits (64), Expect = 2.6
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQE-------MVLMGWIVQKKE 90
ETD ++I+ L GF++E+I + + + IS K+ + + +E
Sbjct: 7 ETDDEYIVEADLPGFKKEDIKLDYKD--GYLTISAKRDESKDEKDKKGNYIR------RE 58
Query: 91 VEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
+F + F +PN V +++KAK+ L I +PK
Sbjct: 59 RYYGSFSRSFYLPN-VDEEEIKAKYENGV--LKITLPK 93
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 29.8 bits (67), Expect = 2.8
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 360 SEKPEDLRKQEPCQEVEEL----TKPEEPCQVPEPEETPQPNEIEPSEEKPDEQE 410
+ + + +EP E + P +PEE + EP E KP+ +
Sbjct: 121 QPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPEL 175
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex. In
the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 30.3 bits (68), Expect = 2.9
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 64 AGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLT 123
A IA+ GK + ++ K V I + + ++K+ KF ++ +
Sbjct: 1798 ATVVIAVGGKNNLSPIIPKF---IPKNVVIVLDNDGEEAKSQRAIEKIINKFKQDNISAR 1854
Query: 124 IFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEE 183
I P ++ EEE+ + + AI IED +++ A E P +
Sbjct: 1855 IVFPDD--------WNDIGEEELQKQLMRAISSIEDKDIEIPKAIADFESVLKM--PNSD 1904
Query: 184 IIEKIE 189
II I+
Sbjct: 1905 IISIID 1910
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 30.0 bits (67), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 356 HRMESEKPEDLRKQEPCQEVEELTKP--EEPCQVPEPEETPQP-NEIEPSEEKPDEQESE 412
+++ +++ Q VE +++P EP PEPE P+P E EP E E E E
Sbjct: 382 LNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 441
Query: 413 ELEKQ 417
Q
Sbjct: 442 PQPNQ 446
>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical
(c) SDRs. GlcDH, is a tetrameric member of the SDR
family, it catalyzes the NAD(P)-dependent oxidation of
beta-D-glucose to D-glucono-delta-lactone. GlcDH has a
typical NAD-binding site glycine-rich pattern as well as
the canonical active site tetrad (YXXXK motif plus
upstream Ser and Asn). SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRS are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes have a 3-glycine N-terminal
NAD(P)(H)-binding pattern (typically, TGxxxGxG in
classical SDRs and TGxxGxxG in extended SDRs), while
substrate binding is in the C-terminal region. A
critical catalytic Tyr residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering), is often found in a conserved YXXXK pattern.
In addition to the Tyr and Lys, there is often an
upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn
(Asn-107, 15-PGDH numbering) or additional Ser,
contributing to the active site. Substrates for these
enzymes include sugars, steroids, alcohols, and aromatic
compounds. The standard reaction mechanism is a proton
relay involving the conserved Tyr and Lys, as well as
Asn (or Ser). Some SDR family members, including 17
beta-hydroxysteroid dehydrogenase contain an additional
helix-turn-helix motif that is not generally found among
SDRs.
Length = 253
Score = 28.9 bits (65), Expect = 5.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGW 84
VS+E D + +K F +DI++N AG + G EM L W
Sbjct: 62 VSKEEDVVALFQSAIKEF--GTLDILVNNAG----LQGDASSHEMTLEDW 105
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 28.7 bits (64), Expect = 6.2
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 242 AEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQT 301
+ + +EQ ++ P ++ + EE P RT++ ++ ++ +P
Sbjct: 93 TPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQP-RTQSQKAQSQATTVQTQPVKPKPR 151
Query: 302 EETWKERLPEEKAPEPRFEAHVPGPE 327
E + + APEP +A
Sbjct: 152 PEK-PQPVAPAPAPEPVEKAPKAEAA 176
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 28.8 bits (65), Expect = 6.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 387 VPEPEETPQPNEIEPSEEKPDEQESEELE 415
P P E + E E + +E+E EE E
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEE 327
>gnl|CDD|146306 pfam03598, CdhC, CO dehydrogenase/acetyl-CoA synthase complex beta
subunit.
Length = 412
Score = 28.8 bits (65), Expect = 6.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 124 IFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEE 183
++MPK +K + E + + + G+ + DKI E A EE
Sbjct: 352 VWMPKELKEE---LKERIPKRAKEMGIEDFFDKIATEE---DATTI------------EE 393
Query: 184 IIEKIEEKQDPGQAEEP 200
++E +EEK P + EP
Sbjct: 394 LLEFLEEKGHPALSMEP 410
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 29.1 bits (66), Expect = 6.7
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 317 PRFEAHV-PGPEMAKTIESG---DDQGSLSTQVEEKHTASKDHHRMESEKPEDL-RKQEP 371
RF+ V P P++A DD L A+ + P++ +++P
Sbjct: 547 ARFKERVLPPPDLAPPAGPPARPDDWSGLPIPAVPAPAAAAAADGDDDGDPDNGGIRRQP 606
Query: 372 CQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDE 408
EL + EE PE P NE + ++ D+
Sbjct: 607 -----ELPEHEEI----VPEPRPPENEFDLLDDDDDD 634
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 28.7 bits (64), Expect = 7.4
Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 11/178 (6%)
Query: 245 ETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEET 304
+TE E+ R+E + S+ + ++ S E+ S E + E + EE
Sbjct: 397 DTEEEERRKRQERERQGTSSR--SSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEE 454
Query: 305 WKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPE 364
+E E + E E E E + S E+ +D R SE
Sbjct: 455 EEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE--PEEDAERRNSEMAG 512
Query: 365 DLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISE 422
R E Q +PE P EE QP ++ E E+ EEL ++
Sbjct: 513 ISRMSEGQQPRGSSVQPESP-----QEEPLQPESMD--AESVGEESDEELLAEESPLS 563
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family.
Length = 359
Score = 28.4 bits (64), Expect = 7.6
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 359 ESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEE 413
E++KPED + EP + E EPE P +P KP++ + EE
Sbjct: 218 EAKKPEDWDEDEPEFIPDPNAVKPEGWLEDEPEYIP-----DPDATKPEDWDDEE 267
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 28.4 bits (63), Expect = 8.3
Identities = 15/77 (19%), Positives = 28/77 (36%)
Query: 158 EDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEI 217
E PE +P+ E N P+E + + DP + D T + +
Sbjct: 325 EAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAV 384
Query: 218 PENGKTEGAEEKFDGGE 234
P+ +E+ +G +
Sbjct: 385 PDRPNGRHRKERKEGED 401
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 28.1 bits (63), Expect = 9.3
Identities = 9/42 (21%), Positives = 11/42 (26%)
Query: 375 VEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEK 416
+EE C P E E E E +K
Sbjct: 114 MEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.126 0.340
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,811,768
Number of extensions: 2390537
Number of successful extensions: 3129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2486
Number of HSP's successfully gapped: 357
Length of query: 468
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 368
Effective length of database: 6,502,202
Effective search space: 2392810336
Effective search space used: 2392810336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (27.3 bits)