RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046062
(468 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 1e-08
Identities = 64/494 (12%), Positives = 135/494 (27%), Gaps = 151/494 (30%)
Query: 1 MELELGFKLTRTRD----DEQTSIADF--RITTDSSGPIFVSEETDSKFILTGYLKGFRR 54
M+ E G + +D E + +F + D I EE
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE---------------- 50
Query: 55 ENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEI--RAFRKVFQIPNGVILDKVK 112
ID +I K V + + W + K+ E+ + +V +I ++ +K
Sbjct: 51 --IDHIIMS---------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 113 AKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIE------DPE----- 161
+ + + +++ + + ++ + + V R + K+ P
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSR--LQPYLKLRQALLELRPAKNVLI 155
Query: 162 --M----KPV-AADEVPEKGTNKAAP-------------KEEIIEKIEE---KQDPGQAE 198
+ K A D E ++E +++ + DP
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 199 EPANDQRTFETTESAAEE---------------IPENGKTEGAEEKFDGGESRPL----- 238
+ S E + N + A F+ + L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRF 274
Query: 239 ENGAEA--ETERVEQTIREESKG-PEVKSKEENERVAEESPG--RTETVSSKPDGEAEIS 293
+ + ++ S + K + + P E +++ P +S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS 331
Query: 294 KITEPLQTE-ETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTAS 352
I E ++ TW ++ HV ++ IES SL
Sbjct: 332 IIAESIRDGLATWD-----------NWK-HVNCDKLTTIIES-----SL----------- 363
Query: 353 KDHHRMESEKPEDLRKQEPCQEVEELTK-PEEPCQVPEPEETPQP--NEIEPSEEKPDEQ 409
+P + RK + L+ P P ++ S+
Sbjct: 364 ------NVLEPAEYRKM-----FDRLSVFPPS---AHIPTILLSLIWFDVIKSDV---MV 406
Query: 410 ESEELEKQKGISED 423
+L K + +
Sbjct: 407 VVNKLHKYSLVEKQ 420
Score = 47.2 bits (111), Expect = 1e-05
Identities = 48/376 (12%), Positives = 100/376 (26%), Gaps = 119/376 (31%)
Query: 145 EVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQ 204
E + + ED + +V + KEEI + I
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEI-DHI--------IMSKDAVS 62
Query: 205 RT---FETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPE 261
T F T S EE+ +KF +E + + I+ E + P
Sbjct: 63 GTLRLFWTLLSKQEEM---------VQKF-------VEEVLRINYKFLMSPIKTEQRQPS 106
Query: 262 VKSK---EENERVAEESPGRTE-TVSSKPDGEAEISKITEPLQ--TEETW---------- 305
+ ++ E+ +R+ ++ + VS K+ + L
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 306 KERLPEEKAPEPRFEAHVPGP----EMAKTIESGDD---QGSLSTQVEEKHTASKDH--- 355
K + + + + + + L Q++ T+ DH
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 356 --HRMESEKPEDLR--KQEP-----------------------CQ--------EVEELTK 380
R+ S + E R K +P C+ +V +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 381 PEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHVSKKSKV 440
+ ++ E + L + K++ + +
Sbjct: 283 AATTTHIS----------LDHHSMTLTPDEVKSL---------------LLKYLDCRPQD 317
Query: 441 CPPLVVAGSALLVSLI 456
P V+ + +S+I
Sbjct: 318 LPREVLTTNPRRLSII 333
Score = 43.7 bits (102), Expect = 1e-04
Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 56/224 (25%)
Query: 22 DFR----ITT-DSSGPIFVSEETDSKFILTGYLKGF-RRENIDIMINEAGDK-------- 67
+ +TT F+S T + L + E +++ +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 68 -------IAISGKKPVQEMVLM--GWIVQKKEVEIRAFRKVFQI------PNGVILDKVK 112
++I + +++ + W K V + + P + +
Sbjct: 323 LTTNPRRLSIIAES-IRDGLATWDNW----KHVNCDKLTTIIESSLNVLEP-----AEYR 372
Query: 113 AKFNEETSNLTIFMPKSVKGHSGV-VI--EEVKEEEVDRGMPEAIDK---IEDPEMKPVA 166
F+ L++F P S + + + +V + +V + + + P+ ++
Sbjct: 373 KMFDR----LSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 167 ----ADEVPEKGTNKAAPKEEIIEK--IEEKQDPGQAEEPANDQ 204
E+ K N+ A I++ I + D P DQ
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 34.8 bits (79), Expect = 0.072
Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 45/148 (30%)
Query: 355 HHRMESEKPE--------------DLRKQEPCQEVEELTKPEEPCQVPEPEETP----QP 396
HH M+ E E C++V+++ K + EE
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIMSK 58
Query: 397 NEIEPS-------EEKPDEQES---EELEKQ------KGIS-EDAAAAAQMKKHVSKKSK 439
+ + + K +E EE+ + I E + + ++ ++ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 440 VC--PPLVVAGSALLVSLIVLVFQLIRA 465
+ + + VS + +L +A
Sbjct: 119 LYNDNQVFAKYN---VSRLQPYLKLRQA 143
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 51.5 bits (122), Expect = 5e-07
Identities = 24/158 (15%), Positives = 44/158 (27%), Gaps = 5/158 (3%)
Query: 289 EAEISKITEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEK 348
++ + Q EET E+ E K E + + + E
Sbjct: 11 HHQLENL--YFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGV 68
Query: 349 HTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPN---EIEPSEEK 405
TAS+ +E + E E + P E P+ + E +P
Sbjct: 69 ATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATN 128
Query: 406 PDEQESEELEKQKGISEDAAAAAQMKKHVSKKSKVCPP 443
++ E K E + + K ++
Sbjct: 129 QGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFN 166
Score = 44.2 bits (103), Expect = 8e-05
Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 10/199 (5%)
Query: 132 GHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEV---PEKGTNKAAPKEEIIEKI 188
H + E E PE + V E TN+A + E
Sbjct: 2 AHHHHHHGHHHQLENLYFQGEETAV---PENSGANTELVSGESEHSTNEADKQNEGEHAR 58
Query: 189 EEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETER 248
E K + + A++ + + E+A E E EEK + A+ ++++
Sbjct: 59 ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDK 118
Query: 249 VEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKER 308
+ E + + E+ +++ + + K + W+
Sbjct: 119 ETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKF-NSWEELLKWE-- 175
Query: 309 LPEEKAPEPRFEAHVPGPE 327
P + + V
Sbjct: 176 -PGAREDDAINRGSVVLAS 193
Score = 42.6 bits (99), Expect = 2e-04
Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 22/218 (10%)
Query: 189 EEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETER 248
+ + Q EE A + + TE + E + + + E+ E + E+
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNE--------GEHARENKLEK 64
Query: 249 VEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKER 308
E S+ + E + T +S E + + E E
Sbjct: 65 AEG--------VATASETASPASNEAATTETAEAASAAKPEEK----ASEVVAETPSAEA 112
Query: 309 LPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASK--DHHRMESEKPEDL 366
P+ + +K + K+T + E L
Sbjct: 113 KPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELL 172
Query: 367 RKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEE 404
+ + +E + + + + ++
Sbjct: 173 KWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKV 210
Score = 41.9 bits (97), Expect = 4e-04
Identities = 22/160 (13%), Positives = 46/160 (28%)
Query: 261 EVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPRFE 320
+ P + + GE+E S Q E EKA
Sbjct: 12 HQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA 71
Query: 321 AHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTK 380
+ P + + + + + + EEK + KP+ ++ E E
Sbjct: 72 SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131
Query: 381 PEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGI 420
+P E ++ + EK + + + + +
Sbjct: 132 ESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEEL 171
Score = 41.9 bits (97), Expect = 4e-04
Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 14/175 (8%)
Query: 265 KEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPRFEAHVP 324
+ E + E + + A ++ + ++ E +
Sbjct: 7 HHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE 66
Query: 325 GPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEP 384
G A + + ++ + KPE+ + + KP+
Sbjct: 67 GVATASETA---------SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPK-- 115
Query: 385 CQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHVSKKSK 439
+ E +P +E E+ + EK+ +K K +
Sbjct: 116 ---SDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNS 167
Score = 35.3 bits (80), Expect = 0.044
Identities = 24/172 (13%), Positives = 47/172 (27%), Gaps = 4/172 (2%)
Query: 139 EEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAE 198
E K+ E + ++K E A + + K EEK AE
Sbjct: 47 EADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAE 106
Query: 199 EPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESK 258
P+ ++ E PE T +E E+ E + + + + + +
Sbjct: 107 TPS--AEAKPKSDKETEAKPE--ATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKE 162
Query: 259 GPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLP 310
+E + S + ++E + L
Sbjct: 163 IKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 214
Score = 33.4 bits (75), Expect = 0.17
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 351 ASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQE 410
A HH + E+L Q V E + + E NE + E +E
Sbjct: 2 AHHHHHHGHHHQLENLYFQGEETAVPENSGANTE--LVSGESEHSTNEADKQNEGEHARE 59
Query: 411 SEELEKQKGISEDAAAAAQMKKHVSKKSK 439
++ + + + A+ + + ++
Sbjct: 60 NKLEKAEGVATASETASPASNEAATTETA 88
Score = 31.1 bits (69), Expect = 0.90
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 2/99 (2%)
Query: 332 IESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPE 391
G + + + TA ++ +E + + ++ E
Sbjct: 6 HHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKA 65
Query: 392 ETP--QPNEIEPSEEKPDEQESEELEKQKGISEDAAAAA 428
E P+ + E+ E E A+
Sbjct: 66 EGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 40.8 bits (96), Expect = 6e-05
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAF 96
T ++ ++ + F + + + + I+GK ++ + R F
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTK--DGVVEITGKHAARQ--------DEHGYISRCF 52
Query: 97 RKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
+ + +P GV +V + + E LT+ P
Sbjct: 53 TRKYTLPPGVDPTQVSSSLSPE-GTLTVEAPM 83
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 41.9 bits (98), Expect = 1e-04
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 11/117 (9%)
Query: 23 FRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLM 82
R + + +F + +K F E ++ + GD I + GK ++
Sbjct: 55 LRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPE--ELKVKVLGDVIEVHGKHEERQ---- 108
Query: 83 GWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIE 139
+ R F + ++IP V + + + + LT+ P+ I
Sbjct: 109 ----DEHGFISREFHRKYRIPADVDPLTITSSLSSD-GVLTVNGPRKQVSGPERTIP 160
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 38.2 bits (90), Expect = 5e-04
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISG-KKPVQEMVLMGWIVQKKEVEIR-- 94
E + F+L L G I++ ++ ++I G +K + +E R
Sbjct: 11 EEVNHFVLYADLPGIDPSQIEVQMD--KGILSIRGERKSESSTETERFSR----IERRYG 64
Query: 95 AFRKVFQIPNGVILDKVKAKFNEETSN--LTIFMPKS 129
+F + F +P+ D + A N L I +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGR----NGVLEIRIPKR 97
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 37.8 bits (88), Expect = 6e-04
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAF 96
+F + +K F E + + + GD I + GK ++ + R F
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL--GDVIEVHGKHEERQ--------DEHGFISREF 51
Query: 97 RKVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
+ ++IP V + + + + LT+ P+
Sbjct: 52 HRKYRIPADVDPLTITSSMSSD-GVLTVNGPR 82
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISG-KKPVQEMVLMGWIVQKKEVEIR-- 94
ET + L G ++E + + + + G+ + +SG + +E W VE
Sbjct: 50 ETPEAHVFKADLPGVKKEEVKVEVED-GNVLVVSGERTKEKEDKNDKWHR----VERSSG 104
Query: 95 AFRKVFQIPNGVILDKVKAKFNEETSN--LTIFMPKS 129
F + F++ +++VKA N LT+ +PK+
Sbjct: 105 KFVRRFRLLEDAKVEEVKAGLE----NGVLTVTVPKA 137
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 36.7 bits (85), Expect = 0.002
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAF 96
F + +K F E I + + GD + + + + + R F
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVV--GDHVEVHARHEERP--------DEHGFIAREF 56
Query: 97 RKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVK 142
+ +++P GV V + + E L+I + S K
Sbjct: 57 HRRYRLPPGVDPAAVTSALSPE-GVLSIQATPASAQASLPSPPAAK 101
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 37.4 bits (87), Expect = 0.003
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISG-KKPVQEMVLMGWIVQKKEVEIR-- 94
E D + +L G +E+I + GD + I + P+ I EI
Sbjct: 63 EGDQHIKVIAWLPGVNKEDIILNAV--GDTLEIRAKRSPLMITESERIIY----SEIPEE 116
Query: 95 -AFRKVFQIPNGVILDKVKAKFNEETSN--LTIFMPKS 129
+ ++P V + AKF N L++ +PK+
Sbjct: 117 EEIYRTIKLPATVKEENASAKFE----NGVLSVILPKA 150
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 35.6 bits (82), Expect = 0.005
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 37 EETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAF 96
KF++ +K F E++ + + D + I GK ++ R F
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQ--EDFVEIHGKHNERQ--------DDHGYISREF 57
Query: 97 RKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVK 131
+ +++P+ V + + + LT PK
Sbjct: 58 HRRYRLPSNVDQSALSCSLSAD-GMLTFSGPKIPS 91
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 35.3 bits (82), Expect = 0.010
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 38 ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
E ++ L GF +E I + +++ I ++ + E V+ + R
Sbjct: 31 EEGGYLVVVADLAGFNKEKIKARV-SGQNELIIEAEREITEPG-----VKYLTQRPKYVR 84
Query: 98 KVFQIPNGVILD-KVKAKFNEETSN--LTIFMPKS 129
KV ++P V D ++ K+ N LTI +P +
Sbjct: 85 KVIRLPYNVAKDAEISGKYE----NGVLTIRIPIA 115
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 36.7 bits (84), Expect = 0.011
Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 12/138 (8%)
Query: 35 VSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIR 94
V ++ F + +K F+ E I I + +K+ + +K V
Sbjct: 106 VGKDGRLHFKVYFNVKNFKAEEITIKAD--KNKLVVRAQKSVAC---------GDAAMSE 154
Query: 95 AFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAI 154
+ + +P V + ++A + L I P + + + + K + +
Sbjct: 155 SVGRSIPLPPSVDRNHIQATITTD-DVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQER 213
Query: 155 DKIEDPEMKPVAADEVPE 172
+
Sbjct: 214 QLAVKNKEGLEIVTAEDG 231
Score = 28.3 bits (62), Expect = 5.9
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 51 GFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDK 110
F +++ + G+K+ + G +E + +E F K F P V K
Sbjct: 244 HFAPKDVKVWAK--GNKVYVHGVTGKEEKTENASHSEHRE-----FYKAFVTPEVVDASK 296
Query: 111 VKAKFNEETSNLTIFMPK 128
+A+ + + + P
Sbjct: 297 TQAEIVDGL--MVVEAPL 312
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.40
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 152 EAIDKIEDPEMKPVAADEVP 171
+A+ K++ +K A D P
Sbjct: 20 QALKKLQA-SLKLYADDSAP 38
Score = 26.8 bits (58), Expect = 9.2
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 404 EKPDEQESEELEKQ-KGISEDAAAAAQMKKHV 434
EK Q ++L+ K ++D+A A +K +
Sbjct: 18 EK---QALKKLQASLKLYADDSAPALAIKATM 46
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.9 bits (69), Expect = 1.0
Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 38/181 (20%)
Query: 160 PEMKPVAADEVPEKG-------TNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTES 212
P M A+ + EK T +A + + +K + + + +E ++ ET +
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
Query: 213 AAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEENERVA 272
+E EN + + ++ +V+ R + S +++R
Sbjct: 856 GIKETKENDEEFYKNKY-------------SSKPYKVDNMTRILPQQSRYISFIKDDRF- 901
Query: 273 EESPGRTETVSS--------KPDGEAEISKITEPLQTEE-------TWKERLPEEKAPEP 317
P R ++ +P + + ++ + + A +P
Sbjct: 902 --VPVRKFKGNNGVVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSALQP 959
Query: 318 R 318
Sbjct: 960 S 960
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 1.5
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 55/153 (35%)
Query: 1 MELELGFKLTRTR---------DDEQTSIADFRITTDSSGPIFVS-EETDSKFIL----- 45
M +E ++ R DE +++ + + G + S + ++++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 46 -TGYLKGFRRENIDIMI---NEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQ 101
TG+L + I N + +G ++RA V
Sbjct: 1836 RTGWL---------VEIVNYNVENQQYVAAG-------------------DLRALDTV-- 1865
Query: 102 IPNGVILDKVKAKFNEETSNLTI-FMPKSVKGH 133
+L+ +K + + L + V+GH
Sbjct: 1866 ---TNVLNFIKLQ-KIDIIELQKSLSLEEVEGH 1894
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 30.3 bits (67), Expect = 1.8
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 339 GSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNE 398
GS+S Q + S + + K+ + E E+ PE + P+ E
Sbjct: 1 GSMSVQ-----SGSTANLPADLATALATAKENDGHDFEAPKVGEDQ-GSPEVTDGPKTEE 54
Query: 399 IE--PSEEKPDEQESEE 413
+EKP E++ +E
Sbjct: 55 ELLALEKEKPAEEKPKE 71
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 29.0 bits (65), Expect = 3.2
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 236 RPLENGAEAETERVEQTIRE------------ESKGPEVKSKEENERVAE 273
R + GA A+ R + + E + K K E ER+AE
Sbjct: 166 RNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 215
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 29.2 bits (66), Expect = 3.5
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 167 ADEV--PEKGTNKAAPKEEIIEKIEEKQDPGQ-------AEEPANDQRTFETTESAAEEI 217
AD + PE+ ++E+ E + + G+ AE +DQ T + +
Sbjct: 215 ADYIFIPERAVPHGKWQDELKEVCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDAL 274
Query: 218 PENG 221
E G
Sbjct: 275 IELG 278
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 29.2 bits (66), Expect = 3.9
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 167 ADEV--PEKGTNKAAPKEEIIEKIEEKQDPGQ-------AEEPANDQRTFETTESAAEEI 217
AD + PEK + ++++ + + + + G+ AE T + + +
Sbjct: 214 ADYIFIPEKPATSSEWQDQMCDIVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVL 273
Query: 218 PENGKTE 224
+ +
Sbjct: 274 VDRLGLD 280
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 28.9 bits (65), Expect = 4.4
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 171 PEKGTNKAAPK-EEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEI 217
P KG A K EEI++ + Q + PAN + +ETT EI
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETT---GPEI 273
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 28.6 bits (65), Expect = 4.4
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 171 PEKGTNKAAPK-EEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEI 217
P KG A K EEI+ K Q E PAN + +ETT EI
Sbjct: 121 PAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETT---GPEI 165
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 28.3 bits (64), Expect = 5.9
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 4/48 (8%)
Query: 171 PEKGTNKAAPK-EEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEI 217
G A ++I+ Q N ETT EI
Sbjct: 126 AALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETT---GPEI 170
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 28.2 bits (64), Expect = 6.3
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 171 PEKGTNKAAPK-EEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEI 217
G + A K EE+ + + P Q E PAN TT AEE+
Sbjct: 121 GADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTT---AEEV 165
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 28.5 bits (64), Expect = 6.3
Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 167 ADEV--PEKGTNKAAPKEEIIEKIEEKQDPGQ-------AEEPANDQRTFETTESAAEEI 217
AD + PEK + ++++ + + + + G+ AE ++ + + + + +
Sbjct: 392 ADYILIPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISNDLSPISCDQVKDVL 451
Query: 218 PENGKTE 224
+
Sbjct: 452 VNRLGLD 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.126 0.340
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,976,388
Number of extensions: 441831
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 91
Length of query: 468
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 371
Effective length of database: 3,993,456
Effective search space: 1481572176
Effective search space used: 1481572176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.2 bits)