RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046062
         (468 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 38  ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
           ET    +    L G ++E + + + + G+ + +SG++  ++         + E     F 
Sbjct: 49  ETPEAHVFKADLPGVKKEEVKVEVED-GNVLVVSGERTKEKEDKNDK-WHRVERSSGKFV 106

Query: 98  KVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVK 131
           + F++     +++VKA        LT+ +PK+  
Sbjct: 107 RRFRLLEDAKVEEVKAGLENGV--LTVTVPKAEV 138


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 38  ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
           E D    +  +L G  +E+I +     GD + I  K+    +     I+  +  E     
Sbjct: 17  EGDQHIKVIAWLPGVNKEDIILNAV--GDTLEIRAKRSPLMITESERIIYSEIPEEEEIY 74

Query: 98  KVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
           +  ++P  V  +   AKF      L++ +PK
Sbjct: 75  RTIKLPATVKEENASAKFENGV--LSVILPK 103


>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score = 27.9 bits (62), Expect = 2.1
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 12/50 (24%)

Query: 236 RPLENGAEAETERVEQTIRE------------ESKGPEVKSKEENERVAE 273
           R +  GA A+  R + +  E            + K      K E ER+AE
Sbjct: 149 RNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 198


>d1chda_ c.40.1.1 (A:) Methylesterase CheB, C-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 198

 Score = 26.4 bits (58), Expect = 6.6
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 15/70 (21%)

Query: 128 KSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEK 187
            ++       I + +   V  GMP          +      EV            ++ ++
Sbjct: 141 LAMYQAGAWTIAQNEASCVVFGMPREA-------INMGGVSEV--------VDLSQVSQQ 185

Query: 188 IEEKQDPGQA 197
           +  K   GQA
Sbjct: 186 MLAKISAGQA 195


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,663,956
Number of extensions: 81653
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 14
Length of query: 468
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,185,626
Effective search space: 449352254
Effective search space used: 449352254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.1 bits)