Query 046067
Match_columns 521
No_of_seqs 200 out of 682
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 8E-108 2E-112 855.8 36.6 345 175-521 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.6 0.077 1.7E-06 52.9 15.3 166 259-476 58-227 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.3 0.36 7.8E-06 46.9 17.8 178 247-477 35-216 (231)
4 TIGR00740 methyltransferase, p 95.4 0.8 1.7E-05 45.1 16.3 106 257-390 53-159 (239)
5 TIGR02716 C20_methyl_CrtF C-20 95.3 0.53 1.1E-05 48.3 15.1 118 245-395 137-258 (306)
6 PLN02233 ubiquinone biosynthes 93.9 5.3 0.00011 40.4 18.1 122 257-406 73-195 (261)
7 TIGR01934 MenG_MenH_UbiE ubiqu 92.8 6.4 0.00014 37.3 15.9 114 248-393 30-145 (223)
8 PF13489 Methyltransf_23: Meth 92.5 0.75 1.6E-05 41.2 8.7 35 255-298 20-54 (161)
9 PF01209 Ubie_methyltran: ubiE 92.1 0.74 1.6E-05 46.1 8.8 181 248-479 38-220 (233)
10 PRK14103 trans-aconitate 2-met 92.1 1.6 3.4E-05 43.5 11.2 107 247-391 19-125 (255)
11 PF13847 Methyltransf_31: Meth 92.1 1.5 3.3E-05 40.0 10.2 106 256-390 2-108 (152)
12 PLN02336 phosphoethanolamine N 92.0 9.8 0.00021 41.5 17.9 112 247-391 256-368 (475)
13 TIGR02072 BioC biotin biosynth 91.4 9.5 0.00021 36.5 15.4 49 458-510 184-232 (240)
14 PRK08317 hypothetical protein; 91.4 11 0.00024 35.8 15.8 45 248-298 10-54 (241)
15 PRK00216 ubiE ubiquinone/menaq 90.2 18 0.00038 34.7 16.9 44 249-298 43-86 (239)
16 PF13649 Methyltransf_25: Meth 89.5 1.2 2.5E-05 37.8 6.5 97 261-384 1-99 (101)
17 smart00138 MeTrc Methyltransfe 89.2 0.64 1.4E-05 47.2 5.4 44 255-298 97-142 (264)
18 PRK06202 hypothetical protein; 88.6 4.9 0.00011 39.4 11.0 107 256-390 59-165 (232)
19 COG2226 UbiE Methylase involve 88.2 20 0.00043 36.4 15.2 178 246-476 40-221 (238)
20 PLN02585 magnesium protoporphy 87.5 8 0.00017 40.6 12.4 172 183-390 66-248 (315)
21 PTZ00098 phosphoethanolamine N 87.1 19 0.00042 36.4 14.5 47 244-298 39-85 (263)
22 TIGR00477 tehB tellurite resis 87.0 11 0.00023 36.4 12.0 111 244-387 17-128 (195)
23 PLN02396 hexaprenyldihydroxybe 86.4 17 0.00036 38.4 14.0 99 259-391 133-234 (322)
24 PRK12335 tellurite resistance 85.5 11 0.00023 38.5 11.9 95 260-387 123-218 (287)
25 PF00891 Methyltransf_2: O-met 84.3 4.3 9.4E-05 39.9 8.1 109 247-394 90-202 (241)
26 PRK05785 hypothetical protein; 84.1 16 0.00034 36.2 11.9 33 258-298 52-84 (226)
27 PF13679 Methyltransf_32: Meth 83.9 8.7 0.00019 35.0 9.4 41 255-298 23-63 (141)
28 TIGR02081 metW methionine bios 83.6 15 0.00033 34.9 11.3 40 248-297 6-45 (194)
29 PRK05134 bifunctional 3-demeth 83.2 47 0.001 32.3 16.3 113 247-391 38-150 (233)
30 PRK01683 trans-aconitate 2-met 82.5 15 0.00033 36.3 11.2 111 245-391 19-129 (258)
31 PRK11207 tellurite resistance 81.8 22 0.00048 34.2 11.7 112 244-388 17-130 (197)
32 PLN02336 phosphoethanolamine N 81.7 10 0.00022 41.3 10.4 141 247-418 27-172 (475)
33 PLN02244 tocopherol O-methyltr 81.6 21 0.00045 37.6 12.3 97 258-387 119-218 (340)
34 PF12847 Methyltransf_18: Meth 81.4 3.3 7.1E-05 35.1 5.3 106 260-391 4-110 (112)
35 PRK11036 putative S-adenosyl-L 81.2 13 0.00028 37.1 10.2 113 247-390 35-147 (255)
36 PF09243 Rsm22: Mitochondrial 79.6 11 0.00024 38.6 9.3 132 246-409 18-156 (274)
37 TIGR02021 BchM-ChlM magnesium 79.6 24 0.00053 34.1 11.3 44 246-298 42-87 (219)
38 TIGR03587 Pse_Me-ase pseudamin 79.3 19 0.00042 35.1 10.5 100 260-394 46-145 (204)
39 TIGR03438 probable methyltrans 78.5 20 0.00043 37.1 10.8 122 244-390 52-175 (301)
40 PF08242 Methyltransf_12: Meth 77.1 1.2 2.6E-05 37.3 1.2 32 262-300 1-32 (99)
41 PF08241 Methyltransf_11: Meth 74.7 14 0.00029 29.7 6.8 93 262-389 1-94 (95)
42 COG2227 UbiG 2-polyprenyl-3-me 72.9 10 0.00022 38.8 6.6 101 256-390 58-159 (243)
43 PRK15068 tRNA mo(5)U34 methylt 72.5 50 0.0011 34.6 12.1 113 247-391 112-225 (322)
44 PRK10258 biotin biosynthesis p 69.2 76 0.0016 31.3 12.0 44 246-298 31-74 (251)
45 COG4106 Tam Trans-aconitate me 66.5 23 0.00049 36.2 7.5 113 250-399 23-136 (257)
46 PLN02232 ubiquinone biosynthes 64.8 1.1E+02 0.0024 28.4 11.5 18 461-478 129-146 (160)
47 PF03848 TehB: Tellurite resis 64.3 54 0.0012 32.3 9.6 111 246-389 19-130 (192)
48 TIGR00452 methyltransferase, p 63.5 85 0.0018 33.1 11.5 44 247-298 111-154 (314)
49 PRK00121 trmB tRNA (guanine-N( 63.2 85 0.0019 30.3 10.8 35 257-298 40-74 (202)
50 TIGR00138 gidB 16S rRNA methyl 62.6 77 0.0017 30.3 10.2 97 258-391 43-141 (181)
51 PRK09489 rsmC 16S ribosomal RN 61.0 86 0.0019 33.3 11.1 116 244-388 183-299 (342)
52 smart00828 PKS_MT Methyltransf 60.1 60 0.0013 31.2 9.1 98 260-388 2-100 (224)
53 TIGR03439 methyl_EasF probable 59.8 62 0.0013 34.2 9.8 152 246-418 67-234 (319)
54 COG0075 Serine-pyruvate aminot 57.7 61 0.0013 35.3 9.4 152 310-476 91-290 (383)
55 KOG3178 Hydroxyindole-O-methyl 56.7 11 0.00025 40.2 3.7 90 346-477 236-328 (342)
56 PRK11873 arsM arsenite S-adeno 56.7 1.7E+02 0.0037 29.2 12.1 98 259-388 79-179 (272)
57 PRK10909 rsmD 16S rRNA m(2)G96 56.6 1.9E+02 0.0042 28.3 12.0 116 249-397 44-164 (199)
58 TIGR03534 RF_mod_PrmC protein- 55.9 1.4E+02 0.003 29.0 11.0 79 257-358 87-166 (251)
59 PF03291 Pox_MCEL: mRNA cappin 55.9 67 0.0015 34.1 9.3 113 257-387 62-181 (331)
60 PRK06922 hypothetical protein; 55.8 87 0.0019 36.6 10.7 111 259-392 420-538 (677)
61 PRK00107 gidB 16S rRNA methylt 55.1 2E+02 0.0044 27.8 11.8 97 258-391 46-144 (187)
62 PRK13255 thiopurine S-methyltr 53.4 2E+02 0.0043 28.5 11.7 45 245-298 22-69 (218)
63 PRK11705 cyclopropane fatty ac 53.1 1E+02 0.0022 33.2 10.3 109 246-390 156-265 (383)
64 PRK07580 Mg-protoporphyrin IX 52.9 1.4E+02 0.0029 28.7 10.3 33 257-298 63-95 (230)
65 TIGR01983 UbiG ubiquinone bios 51.1 2.3E+02 0.0049 27.1 14.4 111 247-390 31-147 (224)
66 smart00650 rADc Ribosomal RNA 50.9 1.3E+02 0.0028 28.0 9.4 42 248-298 4-45 (169)
67 PRK14968 putative methyltransf 50.9 2E+02 0.0044 26.4 12.3 43 247-298 13-55 (188)
68 PRK15001 SAM-dependent 23S rib 50.1 84 0.0018 34.1 9.0 124 244-391 215-339 (378)
69 TIGR00959 ffh signal recogniti 48.9 3.8E+02 0.0083 29.6 14.0 93 175-267 26-139 (428)
70 COG2242 CobL Precorrin-6B meth 48.5 33 0.00073 33.8 5.2 53 250-318 27-82 (187)
71 PF07521 RMMBL: RNA-metabolisi 44.9 40 0.00088 25.0 4.0 40 348-392 1-40 (43)
72 PRK00274 ksgA 16S ribosomal RN 44.6 83 0.0018 32.0 7.6 42 248-298 33-74 (272)
73 TIGR00091 tRNA (guanine-N(7)-) 43.9 2.1E+02 0.0046 27.3 10.0 35 257-298 16-50 (194)
74 KOG2904 Predicted methyltransf 40.1 2.5E+02 0.0055 29.8 10.2 126 217-359 88-235 (328)
75 TIGR03840 TMPT_Se_Te thiopurin 40.1 2.9E+02 0.0063 27.2 10.4 34 257-299 34-67 (213)
76 PF07522 DRMBL: DNA repair met 37.7 1.3E+02 0.0028 26.4 6.8 33 346-388 71-103 (110)
77 PLN02490 MPBQ/MSBQ methyltrans 36.9 2.2E+02 0.0047 30.5 9.5 35 257-298 113-147 (340)
78 PF02353 CMAS: Mycolic acid cy 34.9 1.6E+02 0.0034 30.3 7.9 113 247-391 52-165 (273)
79 KOG1165 Casein kinase (serine/ 34.8 19 0.00042 38.9 1.3 15 254-268 163-177 (449)
80 COG0123 AcuC Deacetylases, inc 33.8 28 0.00062 37.1 2.4 40 348-390 206-246 (340)
81 COG2209 NqrE Na+-transporting 33.4 29 0.00062 33.5 2.0 82 215-296 86-180 (198)
82 PLN02446 (5-phosphoribosyl)-5- 33.3 47 0.001 34.3 3.7 27 254-281 55-81 (262)
83 PLN03075 nicotianamine synthas 32.9 4.1E+02 0.009 28.0 10.6 106 260-392 126-233 (296)
84 PRK14121 tRNA (guanine-N(7)-)- 32.9 4E+02 0.0086 29.2 10.8 43 249-298 114-156 (390)
85 TIGR01626 ytfJ_HI0045 conserve 32.7 1.2E+02 0.0026 29.6 6.3 113 257-382 59-182 (184)
86 TIGR02469 CbiT precorrin-6Y C5 32.3 92 0.002 26.3 4.9 43 249-298 11-53 (124)
87 PF15609 PRTase_2: Phosphoribo 32.1 2.4E+02 0.0053 28.0 8.3 70 252-331 117-187 (191)
88 PTZ00338 dimethyladenosine tra 31.2 1.9E+02 0.0042 30.0 7.9 43 247-298 26-68 (294)
89 smart00857 Resolvase Resolvase 30.7 3.5E+02 0.0075 24.1 8.7 103 306-417 16-127 (148)
90 COG1341 Predicted GTPase or GT 29.5 2.3E+02 0.0051 31.1 8.4 82 348-444 173-254 (398)
91 COG2230 Cfa Cyclopropane fatty 29.2 4.8E+02 0.01 27.4 10.3 111 244-386 55-170 (283)
92 PTZ00063 histone deacetylase; 29.1 40 0.00086 37.3 2.5 148 248-416 156-316 (436)
93 TIGR00755 ksgA dimethyladenosi 29.0 4.5E+02 0.0098 26.2 9.9 45 245-298 17-61 (253)
94 TIGR00537 hemK_rel_arch HemK-r 28.2 4.9E+02 0.011 24.2 12.2 42 248-298 10-51 (179)
95 TIGR00064 ftsY signal recognit 28.1 6E+02 0.013 26.0 10.8 51 179-229 7-60 (272)
96 PRK13944 protein-L-isoaspartat 28.0 5.5E+02 0.012 24.7 10.6 47 246-298 61-107 (205)
97 COG5310 Homospermidine synthas 27.6 2.8E+02 0.0061 30.2 8.3 88 276-409 145-233 (481)
98 PRK13168 rumA 23S rRNA m(5)U19 26.6 6.4E+02 0.014 27.5 11.3 102 256-391 296-399 (443)
99 TIGR01716 RGG_Cterm transcript 26.0 1.2E+02 0.0027 29.0 5.2 55 175-229 127-182 (220)
100 COG1500 Predicted exosome subu 25.7 2.2E+02 0.0047 29.1 6.8 78 411-491 72-152 (234)
101 TIGR02129 hisA_euk phosphoribo 24.7 66 0.0014 33.1 3.1 26 254-283 50-75 (253)
102 PRK07004 replicative DNA helic 24.3 1.5E+02 0.0032 32.9 5.9 70 257-326 296-368 (460)
103 PRK10867 signal recognition pa 24.1 1E+03 0.022 26.4 14.1 79 190-268 44-141 (433)
104 PF11455 DUF3018: Protein of 23.8 45 0.00098 27.5 1.4 20 458-477 3-22 (65)
105 PRK03646 dadX alanine racemase 23.5 1.8E+02 0.0038 31.0 6.1 55 258-319 118-177 (355)
106 PTZ00346 histone deacetylase; 23.3 58 0.0013 36.0 2.5 148 249-417 174-335 (429)
107 PF02310 B12-binding: B12 bind 22.8 2E+02 0.0043 24.7 5.4 84 313-412 19-102 (121)
108 PRK00771 signal recognition pa 22.6 1.1E+03 0.023 26.2 12.5 55 175-229 23-84 (437)
109 cd00635 PLPDE_III_YBL036c_like 21.2 3.5E+02 0.0075 26.4 7.3 73 258-334 118-201 (222)
110 PRK09864 putative peptidase; P 20.9 1.9E+02 0.0042 31.1 5.8 91 283-384 247-343 (356)
111 COG0357 GidB Predicted S-adeno 20.1 2E+02 0.0044 28.9 5.4 57 258-331 68-125 (215)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=7.5e-108 Score=855.81 Aligned_cols=345 Identities=49% Similarity=0.827 Sum_probs=329.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCChhhhHHHHHHHHHHHHHhcCCcchhhhh----------------
Q 046067 175 LKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKAL---------------- 238 (521)
Q Consensus 175 L~~LLl~CA~AV~~gd~~~A~~lL~~L~~~~S~~Gdp~QRlAaYF~eAL~aRl~~sg~~~ykaL---------------- 238 (521)
|++||++||+||+.||...|+.+|++|++++||.|||+||||+||++||.+||.++++.+|+++
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999776665544
Q ss_pred ----ccCCc-------hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchH
Q 046067 239 ----RCKET-------ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGL 307 (521)
Q Consensus 239 ----~~~~P-------tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L 307 (521)
....| ||||||+||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.+. ....+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 23334 999999999999999999999999999999999999999999999999999997765 45689
Q ss_pred HHHHHHHHHHHHHcCCceEEEEe-ccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcE
Q 046067 308 EIVGQRLSKLADLYKVPFEFNAA-AISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKV 386 (521)
Q Consensus 308 ~~~G~rL~~fA~~lgvpFeF~~V-~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkv 386 (521)
++||+||.+||+++||||||++| ..+++++++++|++++||+|||||+|+||||+++++...+||+.||+.||+|+|||
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 55667899999999999999999999999999999888899999999999999999
Q ss_pred EEEEecCCCCCCCchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHH
Q 046067 387 VTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSR 466 (521)
Q Consensus 387 vtlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R 466 (521)
||++|+|+|||+++|++||.|||+||+|+|||||+++|+++.+|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCCHHHHHHHHHHHhccC-CCcEEEEeCCEEEEEECCceeEEEeecC
Q 046067 467 FIMAGFTPYPLSPFVNATIKTLLENYN-DNYTLEERDGALFLGWKNQAIIVSSAWR 521 (521)
Q Consensus 467 m~~AGF~~~plS~~~~~qak~LL~~y~-~gy~l~e~~g~L~LgWk~rpL~s~SAWr 521 (521)
|.+|||+++|+|+.+..|||.||+.|. +||+|++++|||+||||++||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999986 8999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.58 E-value=0.077 Score=52.92 Aligned_cols=166 Identities=17% Similarity=0.278 Sum_probs=87.6
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC--ceEEEEecccccc
Q 046067 259 IHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV--PFEFNAAAISGSE 336 (521)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv--pFeF~~V~~~~~e 336 (521)
-+|+|+|.|.|.--..|.+.+ ..|..++||||.+.. -++.+.+++.+ .++ .++|+. .+..+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~-----~~~~~~v~gvD~S~~------ml~~A~~~~~~----~~~~~~v~~~~--~d~~~ 120 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNI-----HHDNCKIIAIDNSPA------MIERCRRHIDA----YKAPTPVDVIE--GDIRD 120 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhc-----CCCCCeEEEEeCCHH------HHHHHHHHHHh----cCCCCCeEEEe--CChhh
Confidence 579999999997433333322 125679999997643 24444444433 333 355543 22222
Q ss_pred ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCc-EEEEEecCCCCCCCchhHHHHHHHHHHHH
Q 046067 337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPK-VVTLVEQEANTNTAPFFHRFLETMNHYGA 414 (521)
Q Consensus 337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pk-vvtlvEqEan~N~~~F~~RF~EaL~yYsA 414 (521)
+. ....+++++| +.|||++++ .+..+|+.+ +.|+|. +++++|.=.. .++...+.+.+..+.|.
T Consensus 121 ~~-----~~~~D~vv~~--~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~e~~~~-~~~~~~~~~~~~~~~~~- 185 (247)
T PRK15451 121 IA-----IENASMVVLN--FTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEKFSF-EDAKVGELLFNMHHDFK- 185 (247)
T ss_pred CC-----CCCCCEEehh--hHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEEEecCC-CcchhHHHHHHHHHHHH-
Confidence 21 2223454444 588998642 245566555 788997 5567664322 22333444444333321
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHhCCCcccc
Q 046067 415 IFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYP 476 (521)
Q Consensus 415 lFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~Rm~~AGF~~~p 476 (521)
.....+ . ..+++. .....| +-+.++..+...+|+.|||..+-
T Consensus 186 ----~~~g~s---~--~ei~~~--~~~~~~---------~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 186 ----RANGYS---E--LEISQK--RSMLEN---------VMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred ----HHcCCC---H--HHHHHH--HHHHHh---------hcccCCHHHHHHHHHHcCchhHH
Confidence 111111 1 112221 112223 34567888999999999998643
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.30 E-value=0.36 Score=46.94 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-e
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-F 325 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-F 325 (521)
++++..+.-.+.-+|+|+|.|.|.-.. .|+.+- +|..++||||.+.. .++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~~--~~~~~v~gvD~s~~------~~~~a~~~~~----~~~~~~v 98 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEAV--GPEGHVIGLDFSEN------MLSVGRQKVK----DAGLHNV 98 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHHh--CCCCEEEEEECCHH------HHHHHHHHHH----hcCCCce
Confidence 445555553444589999999998333 333331 24568999997532 2444444432 33442 2
Q ss_pred EEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHH-HHHhcCCcEEE-EEecCCCCCCCchhH
Q 046067 326 EFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLR-LVKGLSPKVVT-LVEQEANTNTAPFFH 403 (521)
Q Consensus 326 eF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~vksL~Pkvvt-lvEqEan~N~~~F~~ 403 (521)
+| +..+..++. +....=+.|+.+ +.+||+++ ...+|+ +.+.|+|.-.+ ++|. ...+..
T Consensus 99 ~~--~~~d~~~~~---~~~~~fD~V~~~--~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~---- 158 (231)
T TIGR02752 99 EL--VHGNAMELP---FDDNSFDYVTIG--FGLRNVPD--------YMQVLREMYRVVKPGGKVVCLET-SQPTIP---- 158 (231)
T ss_pred EE--EEechhcCC---CCCCCccEEEEe--cccccCCC--------HHHHHHHHHHHcCcCeEEEEEEC-CCCCCh----
Confidence 33 222222221 111112344444 56788864 234554 56788998544 4443 222222
Q ss_pred HHHHHHHHHHHHH-HhhhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHhCCCccccC
Q 046067 404 RFLETMNHYGAIF-DSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPL 477 (521)
Q Consensus 404 RF~EaL~yYsAlF-DSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~Rm~~AGF~~~pl 477 (521)
-+...+.+|...+ --+...+.+.. .+...+...+. +--...+++..|+.+||+.+.+
T Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 159 GFKQLYFFYFKYIMPLFGKLFAKSY-----KEYSWLQESTR------------DFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHHHHHHcChhHHhhHHhcCCH-----HHHHHHHHHHH------------HcCCHHHHHHHHHHcCCCeeEE
Confidence 2333333332211 11111111111 12222222222 3345668999999999987654
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.44 E-value=0.8 Score=45.10 Aligned_cols=106 Identities=22% Similarity=0.395 Sum_probs=58.4
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEecccccc
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSE 336 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~e 336 (521)
+.-+|+|+|.|.|. ++..|+.+-. .|..++||||.+.. -++.+.+++.++. .+.+++|.. .+..+
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~------ml~~a~~~~~~~~--~~~~v~~~~--~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQP------MVERCRQHIAAYH--SEIPVEILC--NDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHH------HHHHHHHHHHhcC--CCCCeEEEE--CChhh
Confidence 34579999999995 4444544421 25789999997642 2455555554321 122344433 22222
Q ss_pred ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 046067 337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLV 390 (521)
Q Consensus 337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvtlv 390 (521)
+. .....+++ +.+.|||++++ .+..+|+.+ +.|+|.-++++
T Consensus 118 ~~-----~~~~d~v~--~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 VE-----IKNASMVI--LNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CC-----CCCCCEEe--eecchhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 21 22233443 55578998642 234566555 77899866543
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.32 E-value=0.53 Score=48.28 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=67.8
Q ss_pred hhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc
Q 046067 245 TNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP 324 (521)
Q Consensus 245 ANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp 324 (521)
+...|++.+.-.+.-+|+|+|-|.|. +..+++++. |.+++|++|.+. .++.+.+ .++..|+.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~~-------~~~~a~~----~~~~~gl~ 198 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLPG-------AIDLVNE----NAAEKGVA 198 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecHH-------HHHHHHH----HHHhCCcc
Confidence 45677777765666799999999984 344455543 678999998632 2444433 34445553
Q ss_pred --eEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCc-EEEEEecCCC
Q 046067 325 --FEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPK-VVTLVEQEAN 395 (521)
Q Consensus 325 --FeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pk-vvtlvEqEan 395 (521)
++|..- +..+. . ....+++.+. ..||+..++. ...+|+.+ +.|+|. .++++|.-.+
T Consensus 199 ~rv~~~~~--d~~~~---~--~~~~D~v~~~--~~lh~~~~~~------~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 199 DRMRGIAV--DIYKE---S--YPEADAVLFC--RILYSANEQL------STIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred ceEEEEec--CccCC---C--CCCCCEEEeE--hhhhcCChHH------HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 444433 22111 1 1223444433 3678775531 24567555 789996 5557775443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.90 E-value=5.3 Score=40.39 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=65.0
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEecccccc
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSE 336 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~e 336 (521)
+.-+|+|+|.|.|. +...|+.+. +|.-+|||||.+.. -++.+.++....++...-..+|... +.+
T Consensus 73 ~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~------ml~~A~~r~~~~~~~~~~~i~~~~~--d~~- 137 (261)
T PLN02233 73 MGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSE------QLAVAASRQELKAKSCYKNIEWIEG--DAT- 137 (261)
T ss_pred CCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHH------HHHHHHHHhhhhhhccCCCeEEEEc--ccc-
Confidence 34579999999997 334555542 23458999997642 3555544443222222223444332 112
Q ss_pred ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcE-EEEEecCCCCCCCchhHHHH
Q 046067 337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKV-VTLVEQEANTNTAPFFHRFL 406 (521)
Q Consensus 337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkv-vtlvEqEan~N~~~F~~RF~ 406 (521)
.+...++.+=+|-+.+.|||+++ +...+-.+.|-|+|.- ++++|-. ....+|...+.
T Consensus 138 ----~lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~--~~~~~~~~~~~ 195 (261)
T PLN02233 138 ----DLPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSRVSILDFN--KSTQPFTTSMQ 195 (261)
T ss_pred ----cCCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcEEEEEECC--CCCcHHHHHHH
Confidence 22233333334456678999864 2333445557899983 3455432 33345655554
No 7
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.81 E-value=6.4 Score=37.34 Aligned_cols=114 Identities=20% Similarity=0.279 Sum_probs=58.5
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEE
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEF 327 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF 327 (521)
.+++.+...+...|+|+|.+.|. +...++.+- |+..++++|+.+.. .++.+.+++. .+-...|
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~~~------~~~~~~~~~~-----~~~~i~~ 92 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFSSE------MLEVAKKKSE-----LPLNIEF 92 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECCHH------HHHHHHHHhc-----cCCCceE
Confidence 44555544466799999999986 233344332 33478999997532 2333333332 1223344
Q ss_pred EEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHH-HHHHhcCCcEEE-EEecC
Q 046067 328 NAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLL-RLVKGLSPKVVT-LVEQE 393 (521)
Q Consensus 328 ~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~vksL~Pkvvt-lvEqE 393 (521)
.... ..+.. ..++..=+|-+.+.+||+.+ .+.+| +..+.|+|.-.+ ++|..
T Consensus 93 ~~~d--~~~~~-----~~~~~~D~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 93 IQAD--AEALP-----FEDNSFDAVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred Eecc--hhcCC-----CCCCcEEEEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 3322 12211 12222333444567888764 23444 455677888544 55543
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.54 E-value=0.75 Score=41.23 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=25.3
Q ss_pred ccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 255 DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 255 ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
..+.-.|+|+|.+.| .| ...|+.+ |. ++||+|...
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~~ 54 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDISP 54 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESSH
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECCH
Confidence 456779999999999 34 4455554 22 999999764
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.15 E-value=0.74 Score=46.10 Aligned_cols=181 Identities=21% Similarity=0.232 Sum_probs=66.5
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEE
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEF 327 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF 327 (521)
.+++.+...+-..|+|.+.|.|.-+..| +.+. +|.-+|||+|.+.. -|+...+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~--~~~~~v~~vD~s~~------ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRV--GPNGKVVGVDISPG------MLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGS--S---EEEEEES-HH------HHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHC--CCccEEEEecCCHH------HHHHHHHHHHhhCCC---CeeE
Confidence 3555556666679999999999655444 4432 24559999998642 466666666654332 3333
Q ss_pred EEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcE-EEEEecCCCCCCCchhHHHH
Q 046067 328 NAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKV-VTLVEQEANTNTAPFFHRFL 406 (521)
Q Consensus 328 ~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkv-vtlvEqEan~N~~~F~~RF~ 406 (521)
.. .+ .+.|...++..=+|-|.|.||+++| +...+=.+.|-|+|.- ++++|-.- -..++ +.
T Consensus 103 v~--~d-----a~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile~~~--p~~~~---~~ 163 (233)
T PF01209_consen 103 VQ--GD-----AEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILEFSK--PRNPL---LR 163 (233)
T ss_dssp EE---B-----TTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEEEEB---SSHH---HH
T ss_pred EE--cC-----HHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEeeccC--CCCch---hh
Confidence 22 22 2344455566778889999999976 2334556668899974 44565321 11223 33
Q ss_pred HHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHhCCCccccCCH
Q 046067 407 ETMNHYGAIFD-SIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSP 479 (521)
Q Consensus 407 EaL~yYsAlFD-SLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~Rm~~AGF~~~plS~ 479 (521)
..+.+|...+- -+..-+.++ +- +-.+|.+-|.+... .+.-...|+.+||+.+....
T Consensus 164 ~~~~~y~~~ilP~~g~l~~~~---~~--~Y~yL~~Si~~f~~------------~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 164 ALYKFYFKYILPLIGRLLSGD---RE--AYRYLPESIRRFPS------------PEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp HHHHH---------------------------------------------------------------------
T ss_pred ceeeeeecccccccccccccc---cc--cccccccccccccc------------cccccccccccccccccccc
Confidence 33344444331 112222221 11 12345555544332 23445668899998776544
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.12 E-value=1.6 Score=43.52 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=61.7
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+- |..++||||.+. ...+.|+..++.|.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~--------------~~~~~a~~~~~~~~ 77 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSP--------------EMVAAARERGVDAR 77 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCH--------------HHHHHHHhcCCcEE
Confidence 456777765566789999999994 455666663 346899999753 22233444455432
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVE 391 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvE 391 (521)
. .+..++.. ...=+.|+.| +.|||+++ +...+-+..+.|+|.-.+++.
T Consensus 78 --~--~d~~~~~~----~~~fD~v~~~--~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 78 --T--GDVRDWKP----KPDTDVVVSN--AALQWVPE-------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --E--cChhhCCC----CCCceEEEEe--hhhhhCCC-------HHHHHHHHHHhCCCCcEEEEE
Confidence 2 11111111 1112344444 47899875 233344556789999666554
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=92.08 E-value=1.5 Score=39.96 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=61.1
Q ss_pred cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEecccc
Q 046067 256 ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAAISG 334 (521)
Q Consensus 256 e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~~~~ 334 (521)
.+..+|+|+|.|.|..=..|.+.+ .|..+|||||-+. ++=++..+.++..+++ .+|... +.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~----------~~i~~a~~~~~~~~~~ni~~~~~--d~ 63 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISE----------EMIEYAKKRAKELGLDNIEFIQG--DI 63 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSH----------HHHHHHHHHHHHTTSTTEEEEES--BT
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcH----------HHHHHhhcccccccccccceEEe--eh
Confidence 356789999999996554444422 2355699999764 2334555567778887 666553 33
Q ss_pred ccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 046067 335 SEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLV 390 (521)
Q Consensus 335 ~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkvvtlv 390 (521)
.++... +. +.+=+|.+...+||+.+ +...+-++.+.|+|.-++++
T Consensus 64 ~~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 64 EDLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp TCGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEEE
T ss_pred hccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEEE
Confidence 333322 22 22323334445588754 33445566788898866544
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.95 E-value=9.8 Score=41.46 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=62.7
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++||||.+.. .+..+.++ +...+...+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~------~l~~A~~~----~~~~~~~v~ 317 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVN------MISFALER----AIGRKCSVE 317 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHH------HHHHHHHH----hhcCCCceE
Confidence 456666543445689999999995 3345666552 38999998642 23333332 223334555
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHH-HHHHhcCCcEEEEEe
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLL-RLVKGLSPKVVTLVE 391 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~vksL~PkvvtlvE 391 (521)
|...... + +...++..=+|-|...++|+++ + ..+| .+.+.|+|.-.+++.
T Consensus 318 ~~~~d~~--~-----~~~~~~~fD~I~s~~~l~h~~d-------~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 318 FEVADCT--K-----KTYPDNSFDVIYSRDTILHIQD-------K-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEcCcc--c-----CCCCCCCEEEEEECCcccccCC-------H-HHHHHHHHHHcCCCeEEEEE
Confidence 5443221 1 1111222334445567899865 2 3454 555788999776554
No 13
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=91.41 E-value=9.5 Score=36.45 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=29.3
Q ss_pred CChhhHHHHHHhCCCccccCCHHHHHHHHHHHhccCCCcEEEEeCCEEEEEEC
Q 046067 458 EPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWK 510 (521)
Q Consensus 458 E~~~~Wr~Rm~~AGF~~~plS~~~~~qak~LL~~y~~gy~l~e~~g~L~LgWk 510 (521)
......-..+...|....+.........+.+++.|...|. .+| +.+.|+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-i~~~~~ 232 (240)
T TIGR02072 184 DDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ---PDG-LPLTYH 232 (240)
T ss_pred CCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc---CCC-ceeEEE
Confidence 3344555667777887666544445556677777655553 255 667663
No 14
>PRK08317 hypothetical protein; Provisional
Probab=91.41 E-value=11 Score=35.82 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=29.4
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.+++.+.-.+.-+|+|+|.+.|. |. ..++.+- +|.-++|||+.+.
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~~ 54 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRSE 54 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCCH
Confidence 35566665566689999999885 33 3333332 2556899999754
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=90.24 E-value=18 Score=34.71 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 249 IAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 249 IlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
+++.+.-.+..+|+|+|.+.|.= ...++.+ +|+..++|+++.+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~----~~~l~~~--~~~~~~v~~~D~s~ 86 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDL----AIALAKA--VGKTGEVVGLDFSE 86 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHH----HHHHHHH--cCCCCeEEEEeCCH
Confidence 44444434557899999999862 2223332 13478999999754
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.52 E-value=1.2 Score=37.81 Aligned_cols=97 Identities=28% Similarity=0.381 Sum_probs=51.4
Q ss_pred EEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEecccccccccc
Q 046067 261 IIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLE 340 (521)
Q Consensus 261 IIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~~ 340 (521)
|+|+|.|.|.-=..|.+.+ .+ | |..++||||-+.. .++.+.++ .+..+++.+|... +..++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~------~l~~~~~~----~~~~~~~~~~~~~--D~~~l--- 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPE------MLELAKKR----FSEDGPKVRFVQA--DARDL--- 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HH------HHHHHHHH----SHHTTTTSEEEES--CTTCH---
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHH------HHHHHHHh----chhcCCceEEEEC--CHhHC---
Confidence 7999999998888888776 22 2 6699999997642 24333333 3334567777432 22222
Q ss_pred ccccCCCcE-EEEEecCcccCCCCCcccccchHHHHHHHH-HhcCC
Q 046067 341 NLEVRPGEA-LAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSP 384 (521)
Q Consensus 341 ~L~~~~gEa-LaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~P 384 (521)
....+.+ +||.+...+||+.++ .+.++|+.+ +-|+|
T Consensus 62 --~~~~~~~D~v~~~~~~~~~~~~~------~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 62 --PFSDGKFDLVVCSGLSLHHLSPE------ELEALLRRIARLLRP 99 (101)
T ss_dssp --HHHSSSEEEEEE-TTGGGGSSHH------HHHHHHHHHHHTEEE
T ss_pred --cccCCCeeEEEEcCCccCCCCHH------HHHHHHHHHHHHhCC
Confidence 2222233 445445558998643 345666555 44444
No 17
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=89.22 E-value=0.64 Score=47.22 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred ccCceEEEecccCCccchHHHHHHHhcCCC--CCCeEEEeeecCCC
Q 046067 255 DENKIHIIDFLIAQGSQWIILIMALASRPG--GPPHIRITGIDDST 298 (521)
Q Consensus 255 ge~~VHIIDf~I~~G~QWpsLiqaLA~Rpg--GPP~LRITgI~~~~ 298 (521)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+.++|+|+|-+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~ 142 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL 142 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence 346799999999999887777666655421 23478999999765
No 18
>PRK06202 hypothetical protein; Provisional
Probab=88.62 E-value=4.9 Score=39.36 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=54.1
Q ss_pred cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccc
Q 046067 256 ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGS 335 (521)
Q Consensus 256 e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ 335 (521)
.+...|+|+|.|.|. +...|.....+ ..|..+|||||.+.. -++...++. +..++.+.. ... .
T Consensus 59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~------~l~~a~~~~----~~~~~~~~~--~~~--~ 121 (232)
T PRK06202 59 DRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPR------AVAFARANP----RRPGVTFRQ--AVS--D 121 (232)
T ss_pred CCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHH------HHHHHHhcc----ccCCCeEEE--Eec--c
Confidence 345689999999996 33333222221 234679999998642 133222221 122454443 211 1
Q ss_pred cccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 046067 336 EVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLV 390 (521)
Q Consensus 336 ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkvvtlv 390 (521)
.+. ..++..=+|-|.+.|||++++. ...+|+.+..+.-.++++.
T Consensus 122 ~l~-----~~~~~fD~V~~~~~lhh~~d~~------~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 122 ELV-----AEGERFDVVTSNHFLHHLDDAE------VVRLLADSAALARRLVLHN 165 (232)
T ss_pred ccc-----ccCCCccEEEECCeeecCChHH------HHHHHHHHHHhcCeeEEEe
Confidence 111 1123233344445799997631 3467777655544555443
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=88.21 E-value=20 Score=36.42 Aligned_cols=178 Identities=22% Similarity=0.258 Sum_probs=98.8
Q ss_pred hHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-
Q 046067 246 NGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP- 324 (521)
Q Consensus 246 NqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp- 324 (521)
+++..+.+.-.+--+|+|.+.|.|-. .-.|+++-| .-+|||+|.+.+ -|....+|+.+. |+-
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~----a~~~~k~~g---~g~v~~~D~s~~------ML~~a~~k~~~~----~~~~ 102 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDM----ALLLAKSVG---TGEVVGLDISES------MLEVAREKLKKK----GVQN 102 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHH----HHHHHHhcC---CceEEEEECCHH------HHHHHHHHhhcc----Cccc
Confidence 34555555433678999999988843 233444433 789999998653 355555555442 222
Q ss_pred eEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHH-HHHhcCCcEEEEEecCCCCCCCchhH
Q 046067 325 FEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLR-LVKGLSPKVVTLVEQEANTNTAPFFH 403 (521)
Q Consensus 325 FeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~vksL~PkvvtlvEqEan~N~~~F~~ 403 (521)
++|. ..+ .+.|...+.-.=+|.+.|.||+++| .+..|+ +-|=|+|...++|-.=.....+
T Consensus 103 i~fv--~~d-----Ae~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vle~~~p~~~---- 163 (238)
T COG2226 103 VEFV--VGD-----AENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLVLEFSKPDNP---- 163 (238)
T ss_pred eEEE--Eec-----hhhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEEEEcCCCCch----
Confidence 3333 222 2334444555557788889999986 355554 4477899987655333333333
Q ss_pred HHHHHHH-HHHH-HHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHhCCCcccc
Q 046067 404 RFLETMN-HYGA-IFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYP 476 (521)
Q Consensus 404 RF~EaL~-yYsA-lFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~Rm~~AGF~~~p 476 (521)
-|...++ ||.. ++=.+......+.++. .+|..-| +++-..+.-...|..+||..+.
T Consensus 164 ~~~~~~~~~~~~~v~P~~g~~~~~~~~~y-----~yL~eSi------------~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 164 VLRKAYILYYFKYVLPLIGKLVAKDAEAY-----EYLAESI------------RRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hhHHHHHHHHHHhHhhhhceeeecChHHH-----HHHHHHH------------HhCCCHHHHHHHHHhcCceEEe
Confidence 3334444 4444 5544444333233322 2333333 3334445556667889998765
No 20
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=87.53 E-value=8 Score=40.62 Aligned_cols=172 Identities=19% Similarity=0.171 Sum_probs=86.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCChhhhHHHHHHHHH---HHHHhcCCcchhhhhccCCc---hhhHHHHhhhhc-
Q 046067 183 AKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGL---IARLASSGSSIYKALRCKET---ATNGAIAEAMKD- 255 (521)
Q Consensus 183 A~AV~~gd~~~A~~lL~~L~~~~S~~Gdp~QRlAaYF~eAL---~aRl~~sg~~~ykaL~~~~P---tANqAIlEA~~g- 255 (521)
|.++..-|-+.-.. .++.+..|+-.+++..||-+.= -+++.+.-..+-+.-....+ ..=..+++.++.
T Consensus 66 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~ 140 (315)
T PLN02585 66 AAALSLTDPERRRQ-----LQAEEVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAED 140 (315)
T ss_pred HHHHhccChHHHHh-----hhhhhhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhc
Confidence 44444444444332 2455567788889999996531 12222210000000000111 111344555542
Q ss_pred --cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHH-Hc-CCceEEEEec
Q 046067 256 --ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLAD-LY-KVPFEFNAAA 331 (521)
Q Consensus 256 --e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~-~l-gvpFeF~~V~ 331 (521)
.+...|+|+|.|.|. +...|+.+ | .+|||||.+.. .++...++..+.-. .. +...+|....
T Consensus 141 ~~~~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~------ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 141 GSLAGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAA------MVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred CCCCCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHH------HHHHHHHHHHhcccccccccceEEEEcc
Confidence 245689999999987 34455554 2 38999997643 35555444332100 00 2334554322
Q ss_pred cccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 046067 332 ISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLV 390 (521)
Q Consensus 332 ~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkvvtlv 390 (521)
. +++ . ..=+ + |-|...|||++++ ....+++.++.+.|+.+++.
T Consensus 206 l--~~l-----~-~~fD-~-Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 206 L--ESL-----S-GKYD-T-VTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred h--hhc-----C-CCcC-E-EEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 1 111 1 1112 2 3355677888763 23467888888888877664
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=87.12 E-value=19 Score=36.38 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=32.0
Q ss_pred hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 244 tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.+...|++.+.-.+.-+|+|+|.+.|.-- ..|+.+. ..++|||+.+.
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~ 85 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICE 85 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCH
Confidence 44566777776566678999999998733 3344433 24899999753
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=87.00 E-value=11 Score=36.38 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=65.2
Q ss_pred hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC
Q 046067 244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV 323 (521)
Q Consensus 244 tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv 323 (521)
.+...|+++++-.+.-+|+|+|.|.|.--.. ||.+ | .++||||.+.. +-+.+.+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~----la~~-g----~~V~~iD~s~~----------~l~~a~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLY----LSLA-G----YDVRAWDHNPA----------SIASVLDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHH----HHHC-C----CeEEEEECCHH----------HHHHHHHHHHHhCC
Confidence 5677889998766667999999999974433 3444 2 37999997632 22333445556677
Q ss_pred ceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEE
Q 046067 324 PFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVV 387 (521)
Q Consensus 324 pFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvv 387 (521)
+..+...... ... +. ..=+.|+.+ +.+||+..+ .+..+++.+ +.|+|.-.
T Consensus 78 ~v~~~~~d~~--~~~---~~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAYDIN--AAA---LN-EDYDFIFST--VVFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEeccch--hcc---cc-CCCCEEEEe--cccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 7554433221 111 11 112444443 357888542 245667665 67899964
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=86.43 E-value=17 Score=38.39 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=53.5
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC--ceEEEEecccccc
Q 046067 259 IHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV--PFEFNAAAISGSE 336 (521)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv--pFeF~~V~~~~~e 336 (521)
-.|+|+|.|.|. +...||.+ | .++||||.+.. .++...++ ++..++ ..+|.... .++
T Consensus 133 ~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~------~i~~Ar~~----~~~~~~~~~i~~~~~d--ae~ 191 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDK------NVKIARLH----ADMDPVTSTIEYLCTT--AEK 191 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHH------HHHHHHHH----HHhcCcccceeEEecC--HHH
Confidence 469999999997 45567643 3 48999997642 23222221 221121 33443322 122
Q ss_pred ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 046067 337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLVE 391 (521)
Q Consensus 337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~PkvvtlvE 391 (521)
+ ....+..=+|-|...|||+.|. +.||+.+ +-|+|.-.+++.
T Consensus 192 l-----~~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 L-----ADEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred h-----hhccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEE
Confidence 2 1112222234445689999762 4566655 567998766553
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.51 E-value=11 Score=38.54 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=54.6
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccc
Q 046067 260 HIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQL 339 (521)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~ 339 (521)
+|+|+|.|.|. +...||.+ | .++||||.+.. +-+.+.+.|+..++.+++........
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~----------ai~~~~~~~~~~~l~v~~~~~D~~~~---- 179 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQ----------SLENLQEIAEKENLNIRTGLYDINSA---- 179 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHH----------HHHHHHHHHHHcCCceEEEEechhcc----
Confidence 79999999997 33445554 2 48999997642 22344555666788766644322111
Q ss_pred cccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHH-HHhcCCcEE
Q 046067 340 ENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRL-VKGLSPKVV 387 (521)
Q Consensus 340 ~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~-vksL~Pkvv 387 (521)
.+. ..=+.|+.++ .|||+.++ .+..+|+. .+.|+|.-+
T Consensus 180 -~~~-~~fD~I~~~~--vl~~l~~~------~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 180 -SIQ-EEYDFILSTV--VLMFLNRE------RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred -ccc-CCccEEEEcc--hhhhCCHH------HHHHHHHHHHHhcCCCcE
Confidence 111 1123444443 67888543 24456655 477899755
No 25
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=84.30 E-value=4.3 Score=39.92 Aligned_cols=109 Identities=24% Similarity=0.258 Sum_probs=60.5
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..++++..=...-+|||+|-+.|..= .+|+.+. |.+|+|..|.|.. ++ .+++ .=..+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~----~~l~~~~---P~l~~~v~Dlp~v-------~~-~~~~--------~~rv~ 146 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFA----IALARAY---PNLRATVFDLPEV-------IE-QAKE--------ADRVE 146 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHH----HHHHHHS---TTSEEEEEE-HHH-------HC-CHHH--------TTTEE
T ss_pred hhhhccccccCccEEEeccCcchHHH----HHHHHHC---CCCcceeeccHhh-------hh-cccc--------ccccc
Confidence 45566665555568999999999433 3344433 7899999997642 11 1121 22344
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCc---EEEEEecCC
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPK---VVTLVEQEA 394 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pk---vvtlvEqEa 394 (521)
|.+-..- +.+.. +=+|-+...||+.+|+.. ..+|+.+ +.|.|. .++|+|.=.
T Consensus 147 ~~~gd~f------~~~P~----~D~~~l~~vLh~~~d~~~------~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 147 FVPGDFF------DPLPV----ADVYLLRHVLHDWSDEDC------VKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEES-TT------TCCSS----ESEEEEESSGGGS-HHHH------HHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred cccccHH------hhhcc----ccceeeehhhhhcchHHH------HHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 4442221 12222 334444568999987543 3566665 688886 666777543
No 26
>PRK05785 hypothetical protein; Provisional
Probab=84.10 E-value=16 Score=36.24 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=22.8
Q ss_pred ceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 258 KIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.-.|+|+|.|.|.-. ..|+.+.+ .++||||.+.
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S~ 84 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYAE 84 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCCH
Confidence 347999999999543 34454431 4899999764
No 27
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=83.94 E-value=8.7 Score=35.04 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=27.9
Q ss_pred ccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 255 DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 255 ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
..+..+|||||-|.|.==..|-..|... .|.++|+||+...
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCc
Confidence 4678999999999984222222233222 2789999999765
No 28
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.55 E-value=15 Score=34.93 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=26.6
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDS 297 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~ 297 (521)
.|.+.+... -+|+|+|.|.|. ++..|+.+. ..+++||+.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~----~~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK----QVRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc----CCcEEEEeCC
Confidence 455666533 379999999995 456676553 2356899865
No 29
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=83.20 E-value=47 Score=32.27 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=55.8
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
+-|.+.....+..+|+|+|.+.|.- ...|+.+ + .++|+|+.+.. .+..+.+++ ...++..+
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s~~------~~~~a~~~~----~~~~~~~~ 98 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDASEE------NIEVARLHA----LESGLKID 98 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCCHH------HHHHHHHHH----HHcCCceE
Confidence 3344444344567899999998863 2344443 2 36999987542 233333332 23355555
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVE 391 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvE 391 (521)
|..... .++... ....-+.| -+...++|+++ +.+.+-...+.|+|.-.+++.
T Consensus 99 ~~~~~~--~~~~~~--~~~~fD~I--i~~~~l~~~~~-------~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 99 YRQTTA--EELAAE--HPGQFDVV--TCMEMLEHVPD-------PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred EEecCH--HHhhhh--cCCCccEE--EEhhHhhccCC-------HHHHHHHHHHHcCCCcEEEEE
Confidence 544322 111100 00112333 33456777754 223333445677888554443
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=82.48 E-value=15 Score=36.34 Aligned_cols=111 Identities=30% Similarity=0.316 Sum_probs=61.2
Q ss_pred hhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc
Q 046067 245 TNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP 324 (521)
Q Consensus 245 ANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp 324 (521)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++|||.+.. -++.+.+++ -.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~------~i~~a~~~~--------~~ 77 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPA------MLAEARSRL--------PD 77 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHhC--------CC
Confidence 35567777765566789999999993 334555553 3468999997642 122222221 12
Q ss_pred eEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 046067 325 FEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVE 391 (521)
Q Consensus 325 FeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvE 391 (521)
.+|..... .++... ..=+.|+ +.+.|||++| +...+-++.+.|+|.-.+++.
T Consensus 78 ~~~~~~d~--~~~~~~----~~fD~v~--~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 78 CQFVEADI--ASWQPP----QALDLIF--ANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CeEEECch--hccCCC----CCccEEE--EccChhhCCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 33432211 111110 1113444 4457889875 233455556788999777665
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=81.76 E-value=22 Score=34.21 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=62.2
Q ss_pred hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC
Q 046067 244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV 323 (521)
Q Consensus 244 tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv 323 (521)
.++..+++.+...+.-.|+|+|.|.|. +...||.+ | .+|||||.+.. .++.+. +.++..++
T Consensus 17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~------~i~~a~----~~~~~~~~ 77 (197)
T PRK11207 17 RTHSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPM------SIANLE----RIKAAENL 77 (197)
T ss_pred CChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHH------HHHHHH----HHHHHcCC
Confidence 456677888776566789999999997 23445554 2 38999987642 233332 22334455
Q ss_pred c-eEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEE
Q 046067 324 P-FEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVT 388 (521)
Q Consensus 324 p-FeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvt 388 (521)
+ .++... +..++. +. ..=+.|+.+ +.+||+.++ .+..+++.+ +.|+|.-++
T Consensus 78 ~~v~~~~~--d~~~~~---~~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 78 DNLHTAVV--DLNNLT---FD-GEYDFILST--VVLMFLEAK------TIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CcceEEec--ChhhCC---cC-CCcCEEEEe--cchhhCCHH------HHHHHHHHHHHHcCCCcEE
Confidence 4 333332 222221 11 112344444 456887542 245666554 778999653
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=81.68 E-value=10 Score=41.29 Aligned_cols=141 Identities=12% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..|++.+...+.-+|+|+|.|.|.--.. |+.+. + ++||||.+.. .++.. +.+ .. ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~----la~~~-~----~v~giD~s~~------~l~~a-~~~---~~-~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGE----LAKKA-G----QVIALDFIES------VIKKN-ESI---NG-HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHH----HHhhC-C----EEEEEeCCHH------HHHHH-HHH---hc-cCCceE
Confidence 4566776654445899999999954444 44442 1 7899997542 12221 111 11 111233
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEEecCCCCCCCch----
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLVEQEANTNTAPF---- 401 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~PkvvtlvEqEan~N~~~F---- 401 (521)
|........ .+...++..=+|-|.+.|||++++. +..+|..+ +-|+|.-+++....+-.+...+
T Consensus 87 ~~~~d~~~~-----~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~ 155 (475)
T PLN02336 87 FMCADVTSP-----DLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN 155 (475)
T ss_pred EEEeccccc-----ccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC
Confidence 332221111 1122223233344556899997642 34566555 5689997654432222211110
Q ss_pred hHHHHHHHHHHHHHHHh
Q 046067 402 FHRFLETMNHYGAIFDS 418 (521)
Q Consensus 402 ~~RF~EaL~yYsAlFDS 418 (521)
-+-+.-...+|..+|+.
T Consensus 156 ~~~~~~~~~~~~~~f~~ 172 (475)
T PLN02336 156 NPTHYREPRFYTKVFKE 172 (475)
T ss_pred CCCeecChHHHHHHHHH
Confidence 01111225677777765
No 33
>PLN02244 tocopherol O-methyltransferase
Probab=81.58 E-value=21 Score=37.58 Aligned_cols=97 Identities=23% Similarity=0.228 Sum_probs=54.5
Q ss_pred ceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC--ceEEEEeccccc
Q 046067 258 KIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV--PFEFNAAAISGS 335 (521)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv--pFeF~~V~~~~~ 335 (521)
.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.. .-++..+.++..|+ ..+|... +..
T Consensus 119 ~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~----------~i~~a~~~~~~~g~~~~v~~~~~--D~~ 178 (340)
T PLN02244 119 PKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPV----------QAARANALAAAQGLSDKVSFQVA--DAL 178 (340)
T ss_pred CCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHH----------HHHHHHHHHHhcCCCCceEEEEc--Ccc
Confidence 3479999999985 4455666542 38999997532 22233334455565 3555432 222
Q ss_pred cccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHH-HHHHhcCCcEE
Q 046067 336 EVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLL-RLVKGLSPKVV 387 (521)
Q Consensus 336 ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~vksL~Pkvv 387 (521)
++ ...++..=+|-+...+||++| +..+| .+.+-|+|.-.
T Consensus 179 ~~-----~~~~~~FD~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 179 NQ-----PFEDGQFDLVWSMESGEHMPD--------KRKFVQELARVAAPGGR 218 (340)
T ss_pred cC-----CCCCCCccEEEECCchhccCC--------HHHHHHHHHHHcCCCcE
Confidence 21 122333334445668899976 23455 55678899743
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=81.41 E-value=3.3 Score=35.08 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=58.2
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccc
Q 046067 260 HIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQL 339 (521)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~ 339 (521)
+|+|+|-+.|.-=..|.+. + |..|+|||+.+.. .++.+.+++.+.+ .+-..+|+.-.. ..+ .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~---~----~~~~v~gvD~s~~------~~~~a~~~~~~~~--~~~~i~~~~~d~-~~~--~ 65 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARL---F----PGARVVGVDISPE------MLEIARERAAEEG--LSDRITFVQGDA-EFD--P 65 (112)
T ss_dssp EEEEETTTTSHHHHHHHHH---H----TTSEEEEEESSHH------HHHHHHHHHHHTT--TTTTEEEEESCC-HGG--T
T ss_pred EEEEEcCcCCHHHHHHHhc---C----CCCEEEEEeCCHH------HHHHHHHHHHhcC--CCCCeEEEECcc-ccC--c
Confidence 6899999998644333331 2 5678999997642 3555555553322 233455544322 011 1
Q ss_pred cccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 046067 340 ENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLVE 391 (521)
Q Consensus 340 ~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~PkvvtlvE 391 (521)
+ ...+=++++.+. +.+|++... ..+.++|+.+ +.|+|.-+++++
T Consensus 66 ~--~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 66 D--FLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp T--TSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c--cCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 011123555555 567766542 1245667655 688999777664
No 35
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.15 E-value=13 Score=37.08 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++||||.+.. .++.+.+ .++..|+.-.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~~------~l~~a~~----~~~~~g~~~~ 94 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSAE------MIQRAKQ----AAEAKGVSDN 94 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCHH------HHHHHHH----HHHhcCCccc
Confidence 35666665 344699999999994 45566665 2 47999987542 2333333 3344455322
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLV 390 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkvvtlv 390 (521)
...+..+..++.. +.-..=++|+ |...|||+.+ +...+-...+-|+|.-.+++
T Consensus 95 v~~~~~d~~~l~~--~~~~~fD~V~--~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 95 MQFIHCAAQDIAQ--HLETPVDLIL--FHAVLEWVAD-------PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred eEEEEcCHHHHhh--hcCCCCCEEE--ehhHHHhhCC-------HHHHHHHHHHHcCCCeEEEE
Confidence 2222222222211 1111113333 4567888854 33344455678899966543
No 36
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.57 E-value=11 Score=38.57 Aligned_cols=132 Identities=18% Similarity=0.268 Sum_probs=71.1
Q ss_pred hHHHHhhhh----ccCceEEEecccCCcc-chHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHH
Q 046067 246 NGAIAEAMK----DENKIHIIDFLIAQGS-QWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADL 320 (521)
Q Consensus 246 NqAIlEA~~----ge~~VHIIDf~I~~G~-QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~ 320 (521)
-..||+.++ +-.--+|+|||-|-|. =|. ..+.+ +-..++|.|+.+. .+.++|++|.+-..
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wA-a~~~~------~~~~~~~~vd~s~-------~~~~l~~~l~~~~~- 82 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWA-AREVW------PSLKEYTCVDRSP-------EMLELAKRLLRAGP- 82 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHH-HHHHh------cCceeeeeecCCH-------HHHHHHHHHHhccc-
Confidence 344444443 3345699999999985 232 22332 1356899999764 36677888765332
Q ss_pred cCCce-EEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEEecCCCCCC
Q 046067 321 YKVPF-EFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLVEQEANTNT 398 (521)
Q Consensus 321 lgvpF-eF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~PkvvtlvEqEan~N~ 398 (521)
+..- +.. ..+..+.+.+.+.+-|++. +.|-.|++ ..|..+++.+ +.++| +++|||...- .+
T Consensus 83 -~~~~~~~~------~~~~~~~~~~~~~DLvi~s--~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEpGt~-~G 145 (274)
T PF09243_consen 83 -NNRNAEWR------RVLYRDFLPFPPDDLVIAS--YVLNELPS------AARAELVRSLWNKTAP-VLVLVEPGTP-AG 145 (274)
T ss_pred -ccccchhh------hhhhcccccCCCCcEEEEe--hhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcCCCh-HH
Confidence 1111 011 1111222333333444433 45556654 2477788777 55666 8889996532 22
Q ss_pred CchhHHHHHHH
Q 046067 399 APFFHRFLETM 409 (521)
Q Consensus 399 ~~F~~RF~EaL 409 (521)
..++.+.++.|
T Consensus 146 f~~i~~aR~~l 156 (274)
T PF09243_consen 146 FRRIAEARDQL 156 (274)
T ss_pred HHHHHHHHHHH
Confidence 34455555555
No 37
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=79.55 E-value=24 Score=34.08 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=30.1
Q ss_pred hHHHHhhhh--ccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 246 NGAIAEAMK--DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 246 NqAIlEA~~--ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
...+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+|||||.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~ 87 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISE 87 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCH
Confidence 345666665 2346799999999985 555666541 3899999764
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=79.29 E-value=19 Score=35.11 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=54.0
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccc
Q 046067 260 HIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQL 339 (521)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~ 339 (521)
.|+|+|.|.|..-..|.+.+ |..++|||+.+.. .++.+.+++ -++. |... ...+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~------~l~~A~~~~------~~~~--~~~~--d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEY------AVEKAKAYL------PNIN--IIQG--SLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHH------HHHHHHhhC------CCCc--EEEe--eccC---
Confidence 59999999996555554332 2458999997642 233332221 1222 2211 1111
Q ss_pred cccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEecCC
Q 046067 340 ENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEA 394 (521)
Q Consensus 340 ~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEqEa 394 (521)
...++..=+|-+...|||++.+ .+..+++.+....-+.++++|-..
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1112222223345578898532 345677777777667888888643
No 39
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=78.51 E-value=20 Score=37.05 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=71.8
Q ss_pred hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC
Q 046067 244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV 323 (521)
Q Consensus 244 tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv 323 (521)
..-..|++++. ....|||+|.|.|.-=..|+++|.. ..++||||-+.. -|+.+.++|.+- --++
T Consensus 52 ~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~------mL~~a~~~l~~~--~p~~ 115 (301)
T TIGR03438 52 RHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISAD------ALKESAAALAAD--YPQL 115 (301)
T ss_pred HHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHH------HHHHHHHHHHhh--CCCc
Confidence 33444666664 2357999999999877778888743 478999998753 366676766531 1234
Q ss_pred ceEEEEeccccccccccccc-cCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 046067 324 PFEFNAAAISGSEVQLENLE-VRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLV 390 (521)
Q Consensus 324 pFeF~~V~~~~~ev~~~~L~-~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvtlv 390 (521)
+++ .+..+-.+. ...+. ...+..+++.+-..++++..+. ...||+.| +.|+|.-..++
T Consensus 116 ~v~--~i~gD~~~~-~~~~~~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 116 EVH--GICADFTQP-LALPPEPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred eEE--EEEEcccch-hhhhcccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEE
Confidence 443 333322210 00011 1112467777767788886421 34677776 57899755554
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=77.07 E-value=1.2 Score=37.32 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=22.1
Q ss_pred EecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCcc
Q 046067 262 IDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAA 300 (521)
Q Consensus 262 IDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~ 300 (521)
+|+|-+.|.==..|++.+ |..++||+|.+.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~ 32 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSM 32 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSST
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHH
Confidence 477888876555666665 89999999987654
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.67 E-value=14 Score=29.68 Aligned_cols=93 Identities=23% Similarity=0.189 Sum_probs=49.9
Q ss_pred EecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccccc
Q 046067 262 IDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLEN 341 (521)
Q Consensus 262 IDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~~~ 341 (521)
+|+|.+.|.....|.+. +-.++|+||.+.. .-+...+..+..+++ |. .. +...
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~----------~~~~~~~~~~~~~~~--~~--~~-----d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEE----------MLEQARKRLKNEGVS--FR--QG-----DAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HH----------HHHHHHHHTTTSTEE--EE--ES-----BTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHH----------HHHHHHhcccccCch--he--ee-----hHHh
Confidence 57888887766555544 4678999997542 222333333333444 11 11 2334
Q ss_pred cccCCCcEEEEEecCcccCCCCCcccccchHHHHH-HHHHhcCCcEEEE
Q 046067 342 LEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLL-RLVKGLSPKVVTL 389 (521)
Q Consensus 342 L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~vksL~Pkvvtl 389 (521)
+...++-+=+|-+...+||+.+ +..+| ...|-|+|.-+.+
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~~--------~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLED--------PEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSSH--------HHHHHHHHHHHEEEEEEEE
T ss_pred CccccccccccccccceeeccC--------HHHHHHHHHHHcCcCeEEe
Confidence 4455565556667778899922 34455 4457778875543
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=72.90 E-value=10 Score=38.78 Aligned_cols=101 Identities=26% Similarity=0.372 Sum_probs=65.8
Q ss_pred cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccc
Q 046067 256 ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGS 335 (521)
Q Consensus 256 e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ 335 (521)
-...-|.|+|.|.| .|-+.||+. | .++||||-+... ++.+ ...|.+-|+..+|......
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~--G---a~VtgiD~se~~------I~~A----k~ha~e~gv~i~y~~~~~e-- 116 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL--G---ASVTGIDASEKP------IEVA----KLHALESGVNIDYRQATVE-- 116 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC--C---CeeEEecCChHH------HHHH----HHhhhhccccccchhhhHH--
Confidence 35678999999999 777888876 2 899999976432 3222 2345666777777665432
Q ss_pred cccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHH-HHHhcCCcEEEEE
Q 046067 336 EVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLR-LVKGLSPKVVTLV 390 (521)
Q Consensus 336 ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~vksL~Pkvvtlv 390 (521)
++ .-.-|-.=||-|+=.|+|++|. +.|++ ..+-++|.-+++.
T Consensus 117 dl-----~~~~~~FDvV~cmEVlEHv~dp--------~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 117 DL-----ASAGGQFDVVTCMEVLEHVPDP--------ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HH-----HhcCCCccEEEEhhHHHccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 21 1111334467888899999873 23554 5577799866654
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=72.54 E-value=50 Score=34.61 Aligned_cols=113 Identities=17% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHH-HHHHHHHHHcCCce
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVG-QRLSKLADLYKVPF 325 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G-~rL~~fA~~lgvpF 325 (521)
+.|++.+..-+--+|+|+|.|.|.. ...++.+ |+- +++|||.+.. .... +...+++.. +.+.
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~~--------~l~q~~a~~~~~~~-~~~i 174 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQL--------FLCQFEAVRKLLGN-DQRA 174 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCHH--------HHHHHHHHHHhcCC-CCCe
Confidence 3455555433334799999999843 2244444 322 4999996531 1111 111122211 2234
Q ss_pred EEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 046067 326 EFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVE 391 (521)
Q Consensus 326 eF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvE 391 (521)
+|..... +++. . ++-.=+|-|...|||+.+ +.+.|-.+.+.|+|.-.++.|
T Consensus 175 ~~~~~d~--e~lp-----~-~~~FD~V~s~~vl~H~~d-------p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 175 HLLPLGI--EQLP-----A-LKAFDTVFSMGVLYHRRS-------PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEEeCCH--HHCC-----C-cCCcCEEEECChhhccCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 5544322 2221 1 121112334456888754 445555666888998665554
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=69.21 E-value=76 Score=31.28 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=30.1
Q ss_pred hHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 246 NGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 246 NqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
-..+++.+...+.-.|+|+|.|.|. +.+.|+.+ + -++||||.+.
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~ 74 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSP 74 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCH
Confidence 3456666665445579999999994 45666654 2 4799999753
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=66.54 E-value=23 Score=36.15 Aligned_cols=113 Identities=31% Similarity=0.370 Sum_probs=69.2
Q ss_pred HhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEE
Q 046067 250 AEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNA 329 (521)
Q Consensus 250 lEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~ 329 (521)
+.-+.-+.---|+|+|.|-|.+= +-|++|- |--.|||||.+.. .|.+-|+ ......|..
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~~-------------Mla~Aa~-rlp~~~f~~ 81 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSPA-------------MLAKAAQ-RLPDATFEE 81 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCHH-------------HHHHHHH-hCCCCceec
Confidence 33344555668999999999865 4455554 6678999998642 3333333 333444432
Q ss_pred ecccccccccccccc-CCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 046067 330 AAISGSEVQLENLEV-RPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTA 399 (521)
Q Consensus 330 V~~~~~ev~~~~L~~-~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEqEan~N~~ 399 (521)
-... ...- .+-..|.-|. .||-+|| |-+.|-+++-.|.|.-+.-|-.-.|+..+
T Consensus 82 aDl~-------~w~p~~~~dllfaNA--vlqWlpd-------H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 82 ADLR-------TWKPEQPTDLLFANA--VLQWLPD-------HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred ccHh-------hcCCCCccchhhhhh--hhhhccc-------cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 2211 1111 1223455666 5667776 45678899999999999888766665543
No 46
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=64.83 E-value=1.1e+02 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.6
Q ss_pred hhHHHHHHhCCCccccCC
Q 046067 461 GKWRSRFIMAGFTPYPLS 478 (521)
Q Consensus 461 ~~Wr~Rm~~AGF~~~plS 478 (521)
......|+.+||..+...
T Consensus 129 ~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 129 EELETLALEAGFSSACHY 146 (160)
T ss_pred HHHHHHHHHcCCCcceEE
Confidence 456778999999977543
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=64.31 E-value=54 Score=32.27 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=67.5
Q ss_pred hHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCce
Q 046067 246 NGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPF 325 (521)
Q Consensus 246 NqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpF 325 (521)
-..|++|++--+.--++|+|.|.|.== --||++ -..+|+||-+.. .-++|.+.|+.-++++
T Consensus 19 hs~v~~a~~~~~~g~~LDlgcG~GRNa----lyLA~~-----G~~VtAvD~s~~----------al~~l~~~a~~~~l~i 79 (192)
T PF03848_consen 19 HSEVLEAVPLLKPGKALDLGCGEGRNA----LYLASQ-----GFDVTAVDISPV----------ALEKLQRLAEEEGLDI 79 (192)
T ss_dssp -HHHHHHCTTS-SSEEEEES-TTSHHH----HHHHHT-----T-EEEEEESSHH----------HHHHHHHHHHHTT-TE
T ss_pred cHHHHHHHhhcCCCcEEEcCCCCcHHH----HHHHHC-----CCeEEEEECCHH----------HHHHHHHHHhhcCcee
Confidence 345888888777778999999999421 135555 468999997642 2256788999999997
Q ss_pred EEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEE
Q 046067 326 EFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTL 389 (521)
Q Consensus 326 eF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvtl 389 (521)
+......... .+ +++.=+|.+...++|+..+ .++.+++.+ +.++|.-+.+
T Consensus 80 ~~~~~Dl~~~-------~~-~~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 80 RTRVADLNDF-------DF-PEEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp EEEE-BGCCB-------S--TTTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEEE
T ss_pred EEEEecchhc-------cc-cCCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEEE
Confidence 7665443221 22 2333455666778888653 356777666 4679985433
No 48
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=63.46 E-value=85 Score=33.09 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.+|++.+...+.=.|+|+|.|.|. ++..++.+ |+ . +++|||.+.
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~-~v~GiDpS~ 154 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K-SLVGIDPTV 154 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C-EEEEEcCCH
Confidence 456665544444589999999996 33444443 33 2 789999764
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=63.19 E-value=85 Score=30.32 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=25.8
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
+.-.|+|+|.|.|.-...|.+.+ |..++||||.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-------p~~~v~gVD~s~ 74 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-------PDINFIGIEVHE 74 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-------CCccEEEEEech
Confidence 45679999999997666554432 456899999865
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=62.57 E-value=77 Score=30.34 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=50.5
Q ss_pred ceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEecccccc
Q 046067 258 KIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAAISGSE 336 (521)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~~~~~e 336 (521)
.-+|+|+|.|.|. .++.=+. +. |..++||||.+.. .++. +.+.++..|++ ++|.. .+..+
T Consensus 43 ~~~vLDiGcGtG~--~s~~la~--~~---~~~~V~~iD~s~~------~~~~----a~~~~~~~~~~~i~~i~--~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGF--PGIPLAI--AR---PELKLTLLESNHK------KVAF----LREVKAELGLNNVEIVN--GRAED 103 (181)
T ss_pred CCeEEEecCCCCc--cHHHHHH--HC---CCCeEEEEeCcHH------HHHH----HHHHHHHhCCCCeEEEe--cchhh
Confidence 3489999999983 2222122 21 4468999997642 1222 33344555664 44433 33333
Q ss_pred ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 046067 337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLVE 391 (521)
Q Consensus 337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~PkvvtlvE 391 (521)
+.. ..+=++|+.|+ +|++ +.++..+ +-|+|.-+++++
T Consensus 104 ~~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 211 11224555554 4433 2345543 558999777665
No 51
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=61.03 E-value=86 Score=33.33 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=65.8
Q ss_pred hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC
Q 046067 244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV 323 (521)
Q Consensus 244 tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv 323 (521)
.+...+++.+.....=+|+|||.|.|. +-..|+.+. |..++|+||.+.. .++.+.+++. ..++
T Consensus 183 ~gt~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~------Al~~A~~nl~----~n~l 245 (342)
T PRK09489 183 VGSQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAA------ALESSRATLA----ANGL 245 (342)
T ss_pred HHHHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHH----HcCC
Confidence 455677787764434479999999997 344555552 5678999997642 2555544443 3456
Q ss_pred ceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHH-HHhcCCcEEE
Q 046067 324 PFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRL-VKGLSPKVVT 388 (521)
Q Consensus 324 pFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~-vksL~Pkvvt 388 (521)
..+|..... .+ .+ -.+=+.|+.|-+| |...+... .....|++. .+.|+|.-..
T Consensus 246 ~~~~~~~D~--~~----~~-~~~fDlIvsNPPF--H~g~~~~~---~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 246 EGEVFASNV--FS----DI-KGRFDMIISNPPF--HDGIQTSL---DAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred CCEEEEccc--cc----cc-CCCccEEEECCCc--cCCccccH---HHHHHHHHHHHHhcCcCCEE
Confidence 655543211 11 11 1223678888765 44333211 123455544 5678998544
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=60.14 E-value=60 Score=31.24 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=49.9
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccc
Q 046067 260 HIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQL 339 (521)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~ 339 (521)
+|+|+|.+.|. +...|+.+- |..++|||+.+.. .++...+++ +..|+.-....+..+..+..
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~------~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~- 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPE------QAEVGRERI----RALGLQGRIRIFYRDSAKDP- 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHHH----HhcCCCcceEEEecccccCC-
Confidence 68999998886 234455543 3468999987432 233333332 33455432222222221111
Q ss_pred cccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEE
Q 046067 340 ENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVT 388 (521)
Q Consensus 340 ~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvt 388 (521)
+. ..=+.|+ +...+||+.+ ...+|+.+ +.|+|.-.+
T Consensus 64 --~~-~~fD~I~--~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l 100 (224)
T smart00828 64 --FP-DTYDLVF--GFEVIHHIKD--------KMDLFSNISRHLKDGGHL 100 (224)
T ss_pred --CC-CCCCEee--hHHHHHhCCC--------HHHHHHHHHHHcCCCCEE
Confidence 10 1112222 3456788854 24566665 668999544
No 53
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=59.78 E-value=62 Score=34.23 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=86.8
Q ss_pred hHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-
Q 046067 246 NGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP- 324 (521)
Q Consensus 246 NqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp- 324 (521)
-..|.+++. ....|||||-|.|..=..||++|..+ + ..++-.+||-+.+ .|++..++|. .-..|
T Consensus 67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~--~~~~Y~plDIS~~------~L~~a~~~L~----~~~~p~ 131 (319)
T TIGR03439 67 SSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-K--KSVDYYALDVSRS------ELQRTLAELP----LGNFSH 131 (319)
T ss_pred HHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-C--CCceEEEEECCHH------HHHHHHHhhh----hccCCC
Confidence 345666664 33479999999999999999999732 2 2467889997753 4777877776 11245
Q ss_pred eEEEEecccccc-cc-ccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHh--cCCcEEEEEecCCCC----
Q 046067 325 FEFNAAAISGSE-VQ-LENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKG--LSPKVVTLVEQEANT---- 396 (521)
Q Consensus 325 FeF~~V~~~~~e-v~-~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vks--L~PkvvtlvEqEan~---- 396 (521)
.++++|...-.+ +. +..-.....-.+++-.--.+.++..+ ....||+.++. |+|.=..|+=-|...
T Consensus 132 l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~ 205 (319)
T TIGR03439 132 VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDK 205 (319)
T ss_pred eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHH
Confidence 788887664322 11 11000111122333333345555332 23579999977 888744444323221
Q ss_pred -----CC-CchhHH-HHHHHHHHHHHHHh
Q 046067 397 -----NT-APFFHR-FLETMNHYGAIFDS 418 (521)
Q Consensus 397 -----N~-~~F~~R-F~EaL~yYsAlFDS 418 (521)
|. .....+ ..+.|++--..++.
T Consensus 206 l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 206 VLRAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 22 233333 35666666666654
No 54
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=57.65 E-value=61 Score=35.30 Aligned_cols=152 Identities=22% Similarity=0.333 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCceEEEEecccc-ccccccc----cccCCC-cEEEEEecCcccCCCCCcccccchHHHHHHHHHhcC
Q 046067 310 VGQRLSKLADLYKVPFEFNAAAISG-SEVQLEN----LEVRPG-EALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLS 383 (521)
Q Consensus 310 ~G~rL~~fA~~lgvpFeF~~V~~~~-~ev~~~~----L~~~~g-EaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~ 383 (521)
-|+|+.++|+.+|.+...-.+. | +-++++. |.-.++ ++|+|- |- +-|...-||.+.+=..+|.-
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~v------H~-ETSTGvlnpl~~I~~~~k~~- 160 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVV------HN-ETSTGVLNPLKEIAKAAKEH- 160 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEE------ec-cCcccccCcHHHHHHHHHHc-
Confidence 7899999999999887654443 3 2244432 332222 233321 21 33444568899999999988
Q ss_pred CcEEEEEecCCCC-----------------------CCC------chhHHHHHHHH------HHHHHHHhhhhc-----C
Q 046067 384 PKVVTLVEQEANT-----------------------NTA------PFFHRFLETMN------HYGAIFDSIDVA-----L 423 (521)
Q Consensus 384 PkvvtlvEqEan~-----------------------N~~------~F~~RF~EaL~------yYsAlFDSLDa~-----l 423 (521)
..+++|+--+.. ..| .+-+|..|++. ||.-+.+-++.. .
T Consensus 161 -g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~ 239 (383)
T COG0075 161 -GALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGST 239 (383)
T ss_pred -CCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCC
Confidence 555555543221 111 24577777776 776665544322 2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhH-HHHHHhCCCcccc
Q 046067 424 PRDSKDRINVEQHCLAREIVNLIACEG-AERVERHEPFGKW-RSRFIMAGFTPYP 476 (521)
Q Consensus 424 pr~~~eR~~vE~~~l~reI~NiVAcEG-~eRvERhE~~~~W-r~Rm~~AGF~~~p 476 (521)
|-..+ +.+ .+--++-.+.|.-|| ..|++||.....+ |+.|+..||+.++
T Consensus 240 p~Tpp--v~~--i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 240 PYTPP--VNL--IYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred CCCCC--HHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 22222 111 122245556677788 6789999887654 6677889999887
No 55
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=56.72 E-value=11 Score=40.17 Aligned_cols=90 Identities=24% Similarity=0.433 Sum_probs=52.9
Q ss_pred CCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCc-EEEEEecCCCCCCCchhHHHHHHHHHHHHHHHhhhhcC
Q 046067 346 PGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPK-VVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVAL 423 (521)
Q Consensus 346 ~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pk-vvtlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~l 423 (521)
+++++.+- +-|||+.|+.. -.||+.. ++|.|+ .++++|.-..... . ||-+|.
T Consensus 236 ~~daI~mk--WiLhdwtDedc------vkiLknC~~sL~~~GkIiv~E~V~p~e~-~---------------~dd~~s-- 289 (342)
T KOG3178|consen 236 KGDAIWMK--WILHDWTDEDC------VKILKNCKKSLPPGGKIIVVENVTPEED-K---------------FDDIDS-- 289 (342)
T ss_pred CcCeEEEE--eecccCChHHH------HHHHHHHHHhCCCCCEEEEEeccCCCCC-C---------------cccccc--
Confidence 45655554 48999999743 3567555 788998 4456665333211 1 111221
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc-cccccccCCChhhHHHHHHhCCCccccC
Q 046067 424 PRDSKDRINVEQHCLAREIVNLIACE-GAERVERHEPFGKWRSRFIMAGFTPYPL 477 (521)
Q Consensus 424 pr~~~eR~~vE~~~l~reI~NiVAcE-G~eRvERhE~~~~Wr~Rm~~AGF~~~pl 477 (521)
++ .+..++.=.+-|+ |.+|+ ..+|+.-+..+||..+.+
T Consensus 290 ------~v-----~~~~d~lm~~~~~~Gkert-----~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 290 ------SV-----TRDMDLLMLTQTSGGKERT-----LKEFQALLPEEGFPVCMV 328 (342)
T ss_pred ------ce-----eehhHHHHHHHhccceecc-----HHHHHhcchhhcCceeEE
Confidence 11 1222333345566 77775 568999999999986543
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=56.66 E-value=1.7e+02 Score=29.17 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=49.7
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEeccccccc
Q 046067 259 IHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAAISGSEV 337 (521)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~~~~~ev 337 (521)
=+|+|+|.|.|.-...+ +... .+.-+|||||.+.. .++.+.++ ++..|++ .+|.. .+.++
T Consensus 79 ~~VLDiG~G~G~~~~~~----a~~~--g~~~~v~gvD~s~~------~l~~A~~~----~~~~g~~~v~~~~--~d~~~- 139 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLA----ARRV--GPTGKVIGVDMTPE------MLAKARAN----ARKAGYTNVEFRL--GEIEA- 139 (272)
T ss_pred CEEEEeCCCCCHHHHHH----HHHh--CCCCEEEEECCCHH------HHHHHHHH----HHHcCCCCEEEEE--cchhh-
Confidence 38999999888432222 2221 14558999997542 23333332 3334542 33322 22222
Q ss_pred cccccccCCC--cEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEE
Q 046067 338 QLENLEVRPG--EALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVT 388 (521)
Q Consensus 338 ~~~~L~~~~g--EaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkvvt 388 (521)
+....+ +.|+.|+ .+||.++. ...|=...+-|+|.-.+
T Consensus 140 ----l~~~~~~fD~Vi~~~--v~~~~~d~-------~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 140 ----LPVADNSVDVIISNC--VINLSPDK-------ERVFKEAFRVLKPGGRF 179 (272)
T ss_pred ----CCCCCCceeEEEEcC--cccCCCCH-------HHHHHHHHHHcCCCcEE
Confidence 222222 3455565 55777652 23344556788998444
No 57
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=56.65 E-value=1.9e+02 Score=28.32 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=61.9
Q ss_pred HHhhhhc-cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eE
Q 046067 249 IAEAMKD-ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FE 326 (521)
Q Consensus 249 IlEA~~g-e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-Fe 326 (521)
++..+.. .+...|+|++-|.|. --|.+|+.. . -++|+|+..... ++.+.+. ++..|+. .+
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~~~a------~~~a~~N----l~~~~~~~v~ 105 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGA---LGLEALSRY---A--AGATLLEMDRAV------AQQLIKN----LATLKAGNAR 105 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccH---HHHHHHHcC---C--CEEEEEECCHHH------HHHHHHH----HHHhCCCcEE
Confidence 4554432 334578999998883 223455543 1 389999865421 3333333 3334542 33
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKG---LSPKVVTLVEQEANTN 397 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vks---L~PkvvtlvEqEan~N 397 (521)
|. ..+..+. +... ..+=+.|++|=+|. ......++..|.. |.|+-++++|.....+
T Consensus 106 ~~--~~D~~~~-l~~~-~~~fDlV~~DPPy~-----------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 106 VV--NTNALSF-LAQP-GTPHNVVFVDPPFR-----------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred EE--EchHHHH-Hhhc-CCCceEEEECCCCC-----------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 32 2222111 0001 11236788887653 1123467777766 6999999999766543
No 58
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=55.93 E-value=1.4e+02 Score=29.04 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=43.1
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEeccccc
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAAISGS 335 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~~~~~ 335 (521)
+..+|+|+|.|.|. +.-.|+.+. |..++|||+.+.. .++.+ .+.++..|++ ++|.. .+..
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~------~~~~a----~~~~~~~~~~~~~~~~--~d~~ 147 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPE------ALAVA----RKNAARLGLDNVTFLQ--SDWF 147 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHH------HHHHH----HHHHHHcCCCeEEEEE--Cchh
Confidence 34689999999983 333444432 4568999996532 13323 3334455665 44432 2221
Q ss_pred cccccccccCCCcEEEEEecCcc
Q 046067 336 EVQLENLEVRPGEALAVNFSMML 358 (521)
Q Consensus 336 ev~~~~L~~~~gEaLaVN~~~~L 358 (521)
+ .+.-..-+.|+.|.++..
T Consensus 148 ~----~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 148 E----PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred c----cCcCCceeEEEECCCCCc
Confidence 1 111123467888877653
No 59
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=55.86 E-value=67 Score=34.08 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=60.8
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHc---CCceEEEEeccc
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLY---KVPFEFNAAAIS 333 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~l---gvpFeF~~V~~~ 333 (521)
+..+|+|++.|.|.= |..-...+ -=++.|||.+. ..++++.+|..+.-+.. ...+.|.+....
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis~------~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDISE------ESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-H------HHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCCH------HHHHHHHHHHHHhccccccccccccchhheec
Confidence 678999999998842 11111111 22567888654 35889999886655332 234445443222
Q ss_pred cccc--cc-cccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEE
Q 046067 334 GSEV--QL-ENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVV 387 (521)
Q Consensus 334 ~~ev--~~-~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvv 387 (521)
.+.. .+ +.+.-..+..=+|+|+|.||++-.. +.....+|+.| +.|+|.-+
T Consensus 128 ~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes----e~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 128 ADCFSESLREKLPPRSRKFDVVSCQFALHYAFES----EEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS----HHHHHHHHHHHHHTEEEEEE
T ss_pred cccccchhhhhccccCCCcceeehHHHHHHhcCC----HHHHHHHHHHHHHhcCCCCE
Confidence 2211 11 1222223577899999999998542 22234455555 78899844
No 60
>PRK06922 hypothetical protein; Provisional
Probab=55.78 E-value=87 Score=36.58 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=57.5
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEecccccccc
Q 046067 259 IHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQ 338 (521)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~ 338 (521)
-.|+|+|.|.|. +...||.+. |..++||||.+.. -++.+.+++ ...|.+++|.. .+..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~------MLe~Ararl----~~~g~~ie~I~--gDa~dLp 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISEN------VIDTLKKKK----QNEGRSWNVIK--GDAINLS 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHh----hhcCCCeEEEE--cchHhCc
Confidence 479999999984 345566653 5689999998652 244443332 22345554422 2211110
Q ss_pred ccccccCCCcEEEEEecCcccCCCC----Cc--ccccchHHHHH-HHHHhcCCcE-EEEEec
Q 046067 339 LENLEVRPGEALAVNFSMMLHHMPD----ES--VSIQNHRDRLL-RLVKGLSPKV-VTLVEQ 392 (521)
Q Consensus 339 ~~~L~~~~gEaLaVN~~~~LHhl~d----es--vs~~n~rd~~L-~~vksL~Pkv-vtlvEq 392 (521)
.. ..++.+=+|-+.+.+|++.+ .. ....+ ...+| +..+.|+|.- ++++|.
T Consensus 481 -~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~ed-l~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 -SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEV-IKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHH-HHHHHHHHHHHcCCCcEEEEEeC
Confidence 00 23343334445557787642 11 01122 23445 5558999984 445553
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=55.13 E-value=2e+02 Score=27.77 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=52.5
Q ss_pred ceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEecccccc
Q 046067 258 KIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAAISGSE 336 (521)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~~~~~e 336 (521)
.-.|+|+|.|.|. .+++ +|.+. |..++||||.+.. .++ ...+.++..|++ ++|... +..+
T Consensus 46 g~~VLDiGcGtG~--~al~--la~~~---~~~~V~giD~s~~------~l~----~A~~~~~~~~l~~i~~~~~--d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGF--PGIP--LAIAR---PELKVTLVDSLGK------KIA----FLREVAAELGLKNVTVVHG--RAEE 106 (187)
T ss_pred CCeEEEEcCCCCH--HHHH--HHHHC---CCCeEEEEeCcHH------HHH----HHHHHHHHcCCCCEEEEec--cHhh
Confidence 3468999998883 2322 22221 3568999997642 122 233445556664 555433 3333
Q ss_pred ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHH-HHhcCCcEEEEEe
Q 046067 337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRL-VKGLSPKVVTLVE 391 (521)
Q Consensus 337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~-vksL~PkvvtlvE 391 (521)
+.. -.+-+.|+.|+. . ..+.+++. .+.|+|.-.+++.
T Consensus 107 ~~~----~~~fDlV~~~~~-------------~-~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 107 FGQ----EEKFDVVTSRAV-------------A-SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCC----CCCccEEEEccc-------------c-CHHHHHHHHHHhcCCCeEEEEE
Confidence 221 123456666531 1 13456665 5889999776554
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=53.43 E-value=2e+02 Score=28.47 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=28.0
Q ss_pred hhHHHHhhhh---ccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 245 TNGAIAEAMK---DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 245 ANqAIlEA~~---ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.|..+.+.+. ..+.-.|+|.|.|.|. -+..||.+ -..+||||.+.
T Consensus 22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~ 69 (218)
T PRK13255 22 VNPLLQKYWPALALPAGSRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSE 69 (218)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCH
Confidence 4555555443 1234578999998883 23345654 35799999765
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=53.07 E-value=1e+02 Score=33.20 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=56.6
Q ss_pred hHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCce
Q 046067 246 NGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPF 325 (521)
Q Consensus 246 NqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpF 325 (521)
-..|++.+.-.+.=+|+|+|.|.|. +...||.+.+ .++|||+.+.. .++.+.++. + ++.+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~------~l~~A~~~~----~--~l~v 215 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAE------QQKLAQERC----A--GLPV 215 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHH------HHHHHHHHh----c--cCeE
Confidence 3445555543444589999998775 4445555543 48999987642 244444333 1 3344
Q ss_pred EEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 046067 326 EFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLV 390 (521)
Q Consensus 326 eF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvtlv 390 (521)
+|... +..++ . ..=+.|+ +...++|+++. + .+.+++.+ +-|+|.-.+++
T Consensus 216 ~~~~~--D~~~l-----~-~~fD~Iv--s~~~~ehvg~~-----~-~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 216 EIRLQ--DYRDL-----N-GQFDRIV--SVGMFEHVGPK-----N-YRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EEEEC--chhhc-----C-CCCCEEE--EeCchhhCChH-----H-HHHHHHHHHHHcCCCcEEEE
Confidence 44321 11111 1 1113333 23457888542 2 23455544 67899865544
No 64
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=52.91 E-value=1.4e+02 Score=28.70 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=22.4
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
+.-.|+|+|.+.|.- ...|+.+ + .++||||.+.
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~ 95 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISP 95 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCH
Confidence 456899999999853 3344443 2 2499999764
No 65
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=51.15 E-value=2.3e+02 Score=27.08 Aligned_cols=111 Identities=19% Similarity=0.316 Sum_probs=54.5
Q ss_pred HHHHhhhhc----cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcC
Q 046067 247 GAIAEAMKD----ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYK 322 (521)
Q Consensus 247 qAIlEA~~g----e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lg 322 (521)
+-|.+.+.. .....|+|+|.+.|. +...|+.. + .++|+|+.+.. .+....+++. ..+
T Consensus 31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~------~~~~a~~~~~----~~~ 91 (224)
T TIGR01983 31 DYIRDTIRKNKKPLFGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEE------NIEVAKLHAK----KDP 91 (224)
T ss_pred HHHHHHHHhcccCCCCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHH------HHHHHHHHHH----HcC
Confidence 445555543 235689999999884 33344443 2 24899987532 2333333332 334
Q ss_pred C-ceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 046067 323 V-PFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLV 390 (521)
Q Consensus 323 v-pFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvvtlv 390 (521)
+ .+.|.... ..+..... ..+-+.|+.+ ..+||..+ + ..+|+.+ +.|+|.-++++
T Consensus 92 ~~~~~~~~~d--~~~~~~~~--~~~~D~i~~~--~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 92 LLKIEYRCTS--VEDLAEKG--AKSFDVVTCM--EVLEHVPD-------P-QAFIRACAQLLKPGGILFF 147 (224)
T ss_pred CCceEEEeCC--HHHhhcCC--CCCccEEEeh--hHHHhCCC-------H-HHHHHHHHHhcCCCcEEEE
Confidence 4 34443322 11111110 1123444443 45777754 2 3455444 67788855544
No 66
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=50.92 E-value=1.3e+02 Score=27.99 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+-+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCH
Confidence 46666653333489999999986 44455555 2 3799999764
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=50.89 E-value=2e+02 Score=26.38 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.-|++.+...+.-.|+|+|.+.|. +...|+.+ ..++||++.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s~ 55 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDINP 55 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCH----HHHHHHhh-----cceEEEEECCH
Confidence 445566654555679999999998 45556665 24799998653
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=50.06 E-value=84 Score=34.06 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=67.2
Q ss_pred hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC
Q 046067 244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV 323 (521)
Q Consensus 244 tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv 323 (521)
.....+++.+.....=.|+|+|.|.|. +--.|+.+. |..+||+||.+.. .++.+.+++......-.-
T Consensus 215 ~GtrllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~------Av~~A~~N~~~n~~~~~~ 281 (378)
T PRK15001 215 IGARFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPM------AVASSRLNVETNMPEALD 281 (378)
T ss_pred hHHHHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHHHcCcccCc
Confidence 566778888864333389999999997 334555553 6789999998643 244554444322110001
Q ss_pred ceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHH-HHHhcCCcEEEEEe
Q 046067 324 PFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLR-LVKGLSPKVVTLVE 391 (521)
Q Consensus 324 pFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~vksL~PkvvtlvE 391 (521)
.++|.. .+.. +.+.-..=+.|+.|-+|...|-... +-..++++ .-+-|+|.-...++
T Consensus 282 ~v~~~~--~D~l----~~~~~~~fDlIlsNPPfh~~~~~~~-----~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 282 RCEFMI--NNAL----SGVEPFRFNAVLCNPPFHQQHALTD-----NVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred eEEEEE--cccc----ccCCCCCEEEEEECcCcccCccCCH-----HHHHHHHHHHHHhcccCCEEEEE
Confidence 344432 2111 1111112267888888754332111 11234554 45688998665554
No 69
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.95 E-value=3.8e+02 Score=29.59 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCC----CCC-ChhhhHHHHHHHHHHHHHhcCCcchh-h------hhcc
Q 046067 175 LKELLCACAKAIENN--DMYAAESLMAESRQMVS----VSG-DPIQRLGAYMLEGLIARLASSGSSIY-K------ALRC 240 (521)
Q Consensus 175 L~~LLl~CA~AV~~g--d~~~A~~lL~~L~~~~S----~~G-dp~QRlAaYF~eAL~aRl~~sg~~~y-k------aL~~ 240 (521)
+.+.|-+--.|+-.. +...+..++..++..+. +.| +|.|.+.....+.|..-+......+. + .+.+
T Consensus 26 i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~v 105 (428)
T TIGR00959 26 IKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMV 105 (428)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEE
Confidence 444444444444444 46789999999987543 223 56788888888888776644321111 0 0112
Q ss_pred CCc-------hhhHHHHhhhhccCceEEEecccC
Q 046067 241 KET-------ATNGAIAEAMKDENKIHIIDFLIA 267 (521)
Q Consensus 241 ~~P-------tANqAIlEA~~ge~~VHIIDf~I~ 267 (521)
..| ++|-|..=+.+...+|.+||+|.-
T Consensus 106 G~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 106 GLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 222 344333311134578999999973
No 70
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=48.50 E-value=33 Score=33.75 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=35.5
Q ss_pred HhhhhccCceEEEecccCCc---cchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHH
Q 046067 250 AEAMKDENKIHIIDFLIAQG---SQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLA 318 (521)
Q Consensus 250 lEA~~ge~~VHIIDf~I~~G---~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA 318 (521)
+-+++=.+.=|++|+|-+.| .+|. ++ .|..|+++|+.... .++.+.+.+.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~------a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEE------ALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHH------HHHHHHHHHHHhC
Confidence 33444444449999999988 4665 21 37899999997542 4667777766664
No 71
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=44.93 E-value=40 Score=24.98 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=24.8
Q ss_pred cEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEec
Q 046067 348 EALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQ 392 (521)
Q Consensus 348 EaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEq 392 (521)
|.+-|||....-++.. ...++.++.+|+.++|+-+++|-.
T Consensus 1 e~i~v~a~v~~~~fSg-----Had~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSG-----HADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CEEE--SEEEESGCSS-----S-BHHHHHHHHHHHCSSEEEEESS
T ss_pred CEEEeEEEEEEEeecC-----CCCHHHHHHHHHhcCCCEEEEecC
Confidence 3456676333222322 234789999999999999998843
No 72
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=44.59 E-value=83 Score=31.99 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=28.9
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.|++.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.+.
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~ 74 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDR 74 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCH
Confidence 45555554455689999999984 55566666 22 899999764
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=43.93 E-value=2.1e+02 Score=27.26 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=24.2
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
+.--|+|+|.|.|.=.. .||.+. |...++||+...
T Consensus 16 ~~~~ilDiGcG~G~~~~----~la~~~---p~~~v~gvD~~~ 50 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLI----DMAKQN---PDKNFLGIEIHT 50 (194)
T ss_pred CCceEEEeCCCccHHHH----HHHHhC---CCCCEEEEEeeH
Confidence 34469999999986443 444442 567899999754
No 74
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=40.15 E-value=2.5e+02 Score=29.77 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcC------Ccchhhh--hccCCc---------hhhHHHHhhhhcc---CceEEEecccCCccchHHHH
Q 046067 217 AYMLEGLIARLASS------GSSIYKA--LRCKET---------ATNGAIAEAMKDE---NKIHIIDFLIAQGSQWIILI 276 (521)
Q Consensus 217 aYF~eAL~aRl~~s------g~~~yka--L~~~~P---------tANqAIlEA~~ge---~~VHIIDf~I~~G~QWpsLi 276 (521)
..|.++..+|+... |+.-|.. |.|..+ -=-.+++|++... +.-||.|.|.|.|.==.+|+
T Consensus 88 ~~i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll 167 (328)
T KOG2904|consen 88 ESIRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLL 167 (328)
T ss_pred HHHHHHHHHHHhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHH
Confidence 45666777776643 3333443 344432 2234556666543 34589999999998767777
Q ss_pred HHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC--ceEEEEeccccccccccccccCCCcEEEEEe
Q 046067 277 MALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV--PFEFNAAAISGSEVQLENLEVRPGEALAVNF 354 (521)
Q Consensus 277 qaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv--pFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~ 354 (521)
..| |..|+|+||.+.. .+..++++ |+++++ .|+.+-..+..+-..+..+.-.+-..|+-|=
T Consensus 168 ~~L-------~~~~v~AiD~S~~------Ai~La~eN----~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 168 HGL-------PQCTVTAIDVSKA------AIKLAKEN----AQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred hcC-------CCceEEEEeccHH------HHHHHHHH----HHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 666 5789999998653 24444443 455555 3554433333222222223333445666666
Q ss_pred cCccc
Q 046067 355 SMMLH 359 (521)
Q Consensus 355 ~~~LH 359 (521)
++--|
T Consensus 231 PYI~~ 235 (328)
T KOG2904|consen 231 PYIRK 235 (328)
T ss_pred Ccccc
Confidence 55443
No 75
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=40.06 E-value=2.9e+02 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=22.8
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCc
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTA 299 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s 299 (521)
+.=.|+|.|.|.|.- ...||.+ -..+||||-+..
T Consensus 34 ~~~rvLd~GCG~G~d----a~~LA~~-----G~~V~gvD~S~~ 67 (213)
T TIGR03840 34 AGARVFVPLCGKSLD----LAWLAEQ-----GHRVLGVELSEI 67 (213)
T ss_pred CCCeEEEeCCCchhH----HHHHHhC-----CCeEEEEeCCHH
Confidence 345899999998831 2335554 247999997653
No 76
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=37.73 E-value=1.3e+02 Score=26.37 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=24.4
Q ss_pred CCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEE
Q 046067 346 PGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVT 388 (521)
Q Consensus 346 ~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkvvt 388 (521)
.+..-+...++..| +...++...|+.|+|+-|+
T Consensus 71 ~~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCCceEEEEecccC----------CCHHHHHHHHHhcCCcEEE
Confidence 34556666677666 2357899999999999876
No 77
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=36.94 E-value=2.2e+02 Score=30.48 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=23.2
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
...+|+|+|.+.|.-...+ +.+.+ ..++|+||.+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~L----a~~~~---~~~VtgVD~S~ 147 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGI----VKHVD---AKNVTILDQSP 147 (340)
T ss_pred CCCEEEEEecCCcHHHHHH----HHHCC---CCEEEEEECCH
Confidence 3468999999999744433 33321 25799999753
No 78
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=34.89 E-value=1.6e+02 Score=30.34 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..|+|.+.=++-=||+|+|.| |-.+...+|++.| .++|||..+. +--+...+.++..|++-.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~----------~Q~~~a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSE----------EQAEYARERIREAGLEDR 113 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-H----------HHHHHHHHHHHCSTSSST
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCH----------HHHHHHHHHHHhcCCCCc
Confidence 345555544455589999765 7788888888863 5899998653 122334455666787633
Q ss_pred EEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 046067 327 FNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVVTLVE 391 (521)
Q Consensus 327 F~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~PkvvtlvE 391 (521)
...+..+..+++. +=++ |-++-.+-|+..+ ....|++.+ +-|+|.-..++.
T Consensus 114 v~v~~~D~~~~~~------~fD~--IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 114 VEVRLQDYRDLPG------KFDR--IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEEES-GGG---------S-SE--EEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEE
T ss_pred eEEEEeeccccCC------CCCE--EEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3333333333222 2223 2233457788542 246777777 677999776654
No 79
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=34.80 E-value=19 Score=38.88 Aligned_cols=15 Identities=67% Similarity=0.926 Sum_probs=12.1
Q ss_pred hccCceEEEecccCC
Q 046067 254 KDENKIHIIDFLIAQ 268 (521)
Q Consensus 254 ~ge~~VHIIDf~I~~ 268 (521)
+.+..|||||||++.
T Consensus 163 k~~n~IhiiDFGmAK 177 (449)
T KOG1165|consen 163 KDANVIHIIDFGMAK 177 (449)
T ss_pred CCCceEEEEeccchh
Confidence 456789999999863
No 80
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.75 E-value=28 Score=37.08 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=25.4
Q ss_pred cEEEEEecCcccCCCCCcccccchHHH-HHHHHHhcCCcEEEEE
Q 046067 348 EALAVNFSMMLHHMPDESVSIQNHRDR-LLRLVKGLSPKVVTLV 390 (521)
Q Consensus 348 EaLaVN~~~~LHhl~desvs~~n~rd~-~L~~vksL~Pkvvtlv 390 (521)
|--.||.++ .+...|++.. ...+. ++-.++..+|++|++.
T Consensus 206 ~g~~vNiPL-p~g~~d~~y~--~a~~~~v~~~~~~f~Pdlvivs 246 (340)
T COG0123 206 EGNNVNIPL-PPGTGDDSYL--EALEEIVLPLLEEFKPDLVIVS 246 (340)
T ss_pred ccceEeeec-CCCCCcHHHH--HHHHHHHHHHHHhcCCCEEEEe
Confidence 567888877 4555554331 12233 5678888999998865
No 81
>COG2209 NqrE Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]
Probab=33.36 E-value=29 Score=33.50 Aligned_cols=82 Identities=26% Similarity=0.266 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhccCCc--hhhHHHHhhh-----hccCceEEEecccCCccchHHHHHHHhcCC----
Q 046067 215 LGAYMLEGLIARLASSGSSIYKALRCKET--ATNGAIAEAM-----KDENKIHIIDFLIAQGSQWIILIMALASRP---- 283 (521)
Q Consensus 215 lAaYF~eAL~aRl~~sg~~~ykaL~~~~P--tANqAIlEA~-----~ge~~VHIIDf~I~~G~QWpsLiqaLA~Rp---- 283 (521)
+-+-|++-|.--+.+-.+.+|.+|---.| +-|-||+-++ ++-...--+=||.+.|..|.--|-+||.-.
T Consensus 86 ViAa~vQILEm~Ldk~~p~Ly~aLGifLPLitvnCAI~ggv~FmvqR~Y~f~es~vyg~GsG~gW~LAIvalAgirEKmk 165 (198)
T COG2209 86 VIAALVQILEMLLDKFSPSLYNALGIFLPLITVNCAIFGGVSFMVQRDYNFAESVVYGFGSGLGWMLAIVALAGIREKMK 165 (198)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHhcceeEEEeecCCCchhhheecCCchHHHHHHHHHHhHHHHhh
Confidence 44455555555556666678887765566 9999999876 344556667799999999999999998754
Q ss_pred --CCCCeEEEeeecC
Q 046067 284 --GGPPHIRITGIDD 296 (521)
Q Consensus 284 --gGPP~LRITgI~~ 296 (521)
+-|+.||=+||.-
T Consensus 166 YsdvP~gL~GlGItF 180 (198)
T COG2209 166 YSDVPKGLQGLGITF 180 (198)
T ss_pred cccCccccccCcchh
Confidence 3466777666654
No 82
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=33.26 E-value=47 Score=34.35 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=21.6
Q ss_pred hccCceEEEecccCCccchHHHHHHHhc
Q 046067 254 KDENKIHIIDFLIAQGSQWIILIMALAS 281 (521)
Q Consensus 254 ~ge~~VHIIDf~I~~G~QWpsLiqaLA~ 281 (521)
.|.+.+||||+|-+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 478999999999877777 556777766
No 83
>PLN03075 nicotianamine synthase; Provisional
Probab=32.90 E-value=4.1e+02 Score=27.97 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=57.3
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCC--ceEEEEeccccccc
Q 046067 260 HIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKV--PFEFNAAAISGSEV 337 (521)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgv--pFeF~~V~~~~~ev 337 (521)
.|+|.|.|.|-=|..++.+-. .|.-++||||.+.. ..+..+++.+- ..|+ ..+|+...... +
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d~~-------ai~~Ar~~~~~--~~gL~~rV~F~~~Da~~--~ 189 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDIDPS-------ANDVARRLVSS--DPDLSKRMFFHTADVMD--V 189 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCCHH-------HHHHHHHHhhh--ccCccCCcEEEECchhh--c
Confidence 489999998866665554332 24459999997643 33344444321 2333 35555532211 1
Q ss_pred cccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEec
Q 046067 338 QLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQ 392 (521)
Q Consensus 338 ~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEq 392 (521)
... ..+=+ +|+.. .||++..+ .+.+.|-+..+.|+|.-++++.-
T Consensus 190 ~~~---l~~FD-lVF~~--ALi~~dk~-----~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 TES---LKEYD-VVFLA--ALVGMDKE-----EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccc---cCCcC-EEEEe--cccccccc-----cHHHHHHHHHHhcCCCcEEEEec
Confidence 000 11112 33332 88988432 23444445557799998888864
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=32.88 E-value=4e+02 Score=29.23 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 249 IAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 249 IlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
+++.+.+.+.-.|+|+|.|.| .++-.||.+. |...++||+-..
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P~~~~iGIEI~~ 156 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---PNKLFIGIEIHT 156 (390)
T ss_pred HHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---CCCCEEEEECCH
Confidence 566667766778999999998 4455666664 667999999754
No 85
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=32.67 E-value=1.2e+02 Score=29.63 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=67.2
Q ss_pred CceEEEecccC---CccchHHHHHHHhcCCCCCCeEEE------eeecCCCccccCCchHHHHHHHHHHHHHHcCCceEE
Q 046067 257 NKIHIIDFLIA---QGSQWIILIMALASRPGGPPHIRI------TGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEF 327 (521)
Q Consensus 257 ~~VHIIDf~I~---~G~QWpsLiqaLA~RpgGPP~LRI------TgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF 327 (521)
.+|+||.|=-+ -+-.=.++|.+|+.+ .+.+ |||.... ....++.-+..|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd-------~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADD-------AIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECcc-------chhhHHHHHHHHHHHhcccCCc
Confidence 68999998543 346667899999655 3556 8887432 3567888999999999988877
Q ss_pred EEeccccccccccccccCC-CcE-EEEEecCcccCCCCCcccccchHHHHHHHHHhc
Q 046067 328 NAAAISGSEVQLENLEVRP-GEA-LAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGL 382 (521)
Q Consensus 328 ~~V~~~~~ev~~~~L~~~~-gEa-LaVN~~~~LHhl~desvs~~n~rd~~L~~vksL 382 (521)
.++..+..-......++.. .++ ++||-.=.+.+.-....+ ....+.++..|++|
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 6666554322222344433 255 577654433322111111 12234466666654
No 86
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=32.28 E-value=92 Score=26.33 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 249 IAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 249 IlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
+++.+.-.+.=+|+|+|.+.|..= ..|+.+. |..++|+||.+.
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~----~~l~~~~---~~~~v~~vD~s~ 53 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSIT----IEAARLV---PNGRVYAIERNP 53 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHH----HHHHHHC---CCceEEEEcCCH
Confidence 344443222238999999988642 3334432 347899999764
No 87
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=32.11 E-value=2.4e+02 Score=27.97 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=50.7
Q ss_pred hhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeee-cCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEe
Q 046067 252 AMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGI-DDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAA 330 (521)
Q Consensus 252 A~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI-~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V 330 (521)
.+.+.+.|=+||=.|..|.=-..+|++|-..-. -.++-+..| |+.. .+-..+..++++.+|+|.+|..+
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~---------~~~~~~~~~~~~~lgi~i~~vsL 186 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRS---------EEDRARFEALAEELGIPIDVVSL 186 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCC---------HHHHHHHHHHHHHcCCcEEEEEe
Confidence 344467999999999999999999999977642 223333333 4322 23456788999999999999876
Q ss_pred c
Q 046067 331 A 331 (521)
Q Consensus 331 ~ 331 (521)
.
T Consensus 187 ~ 187 (191)
T PF15609_consen 187 L 187 (191)
T ss_pred e
Confidence 4
No 88
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.20 E-value=1.9e+02 Score=30.03 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=27.2
Q ss_pred HHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 247 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 247 qAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
..|++++.-.+.=.|+|+|-|.|.--. .|+.+. -++++|+-+.
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~----~Ll~~~-----~~V~avEiD~ 68 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTE----KLLQLA-----KKVIAIEIDP 68 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHH----HHHHhC-----CcEEEEECCH
Confidence 355555554444479999999887443 444432 2689998654
No 89
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=30.70 E-value=3.5e+02 Score=24.06 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHcCCceE--EEEecccccccccccc-----ccCCCc--EEEEEecCcccCCCCCcccccchHHHHH
Q 046067 306 GLEIVGQRLSKLADLYKVPFE--FNAAAISGSEVQLENL-----EVRPGE--ALAVNFSMMLHHMPDESVSIQNHRDRLL 376 (521)
Q Consensus 306 ~L~~~G~rL~~fA~~lgvpFe--F~~V~~~~~ev~~~~L-----~~~~gE--aLaVN~~~~LHhl~desvs~~n~rd~~L 376 (521)
.++.--+.|.+||+..|.++. |.-...+....+...| .++.|+ +|+|--.- ++.... .....++
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~---Rl~R~~----~~~~~~~ 88 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLD---RLGRSL----RDLLALL 88 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccc---hhhCcH----HHHHHHH
Confidence 466667789999999998763 3333222222222111 256677 78876433 343211 1234678
Q ss_pred HHHHhcCCcEEEEEecCCCCCCCchhHHHHHHHHHHHHHHH
Q 046067 377 RLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFD 417 (521)
Q Consensus 377 ~~vksL~PkvvtlvEqEan~N~~~F~~RF~EaL~yYsAlFD 417 (521)
..++..+=+|+++-|+-.+.+ ....++...+....|-+|
T Consensus 89 ~~l~~~gi~l~~~~~~~~~~~--~~~~~~~~~i~~~~a~~e 127 (148)
T smart00857 89 ELLEKKGVRLVSVTEGIEDTS--TPAGRLMLDILAALAEFE 127 (148)
T ss_pred HHHHHCCCEEEECcCCCCCCC--CHHHHHHHHHHHHHHHHH
Confidence 888888877776655433333 334455544444444333
No 90
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=29.54 E-value=2.3e+02 Score=31.11 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=48.2
Q ss_pred cEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEecCCCCCCCchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 046067 348 EALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDS 427 (521)
Q Consensus 348 EaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~ 427 (521)
+.++||+.=+.+ .....+-...+|...+|.+|+.+|.+ |...++.+=.+...| ...-|+..++.-
T Consensus 173 ~~ilIdT~GWi~--------G~~g~elk~~li~~ikP~~Ii~l~~~---~~~~~l~~~~~~~~~----~~~~~~~~~~sR 237 (398)
T COG1341 173 DFILIDTDGWIK--------GWGGLELKRALIDAIKPDLIIALERA---NELSPLLEGVESIVY----LKVPDAVAPRSR 237 (398)
T ss_pred CEEEEcCCCcee--------CchHHHHHHHHHhhcCCCEEEEeccc---cccchhhhcccCceE----EeccccccccCh
Confidence 356788754433 22345667788899999999999876 444445444455544 344455556666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046067 428 KDRINVEQHCLAREIVN 444 (521)
Q Consensus 428 ~eR~~vE~~~l~reI~N 444 (521)
.||...=.+-++|.+.+
T Consensus 238 ~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 238 EERKELREEKYRRYFEG 254 (398)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 66654322234444443
No 91
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=29.20 E-value=4.8e+02 Score=27.39 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred hhhHHHHhhhh----ccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHH
Q 046067 244 ATNGAIAEAMK----DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLAD 319 (521)
Q Consensus 244 tANqAIlEA~~----ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~ 319 (521)
.|-.+.++.+. =++--||.||| +.|=.|+.-.|.+- -+++|||+-+.+ .+..+. +-++
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiG----CGWG~l~~~aA~~y----~v~V~GvTlS~~------Q~~~~~----~r~~ 116 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIG----CGWGGLAIYAAEEY----GVTVVGVTLSEE------QLAYAE----KRIA 116 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeC----CChhHHHHHHHHHc----CCEEEEeeCCHH------HHHHHH----HHHH
Confidence 44555555554 35677999986 56888999999886 368999987653 233333 3345
Q ss_pred HcCCceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHh-cCCcE
Q 046067 320 LYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKG-LSPKV 386 (521)
Q Consensus 320 ~lgvpFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vks-L~Pkv 386 (521)
..|++=..+.+..+..++... + |- |-++=+++|+..+. -+.|++.+++ |+|+-
T Consensus 117 ~~gl~~~v~v~l~d~rd~~e~-f----Dr---IvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G 170 (283)
T COG2230 117 ARGLEDNVEVRLQDYRDFEEP-F----DR---IVSVGMFEHVGKEN------YDDFFKKVYALLKPGG 170 (283)
T ss_pred HcCCCcccEEEeccccccccc-c----ce---eeehhhHHHhCccc------HHHHHHHHHhhcCCCc
Confidence 567663333333344333222 1 22 22334678886542 3578887754 57763
No 92
>PTZ00063 histone deacetylase; Provisional
Probab=29.13 E-value=40 Score=37.32 Aligned_cols=148 Identities=13% Similarity=0.120 Sum_probs=74.2
Q ss_pred HHHhhhhccCceEEEecccC--CccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCce
Q 046067 248 AIAEAMKDENKIHIIDFLIA--QGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPF 325 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~--~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpF 325 (521)
||+++.+..+||=|||||+- .|+|+.- ... |.+-.-.+......+...+...++|..--+ .-.+|||+
T Consensus 156 Ai~~L~~~~~RVliID~DvHHGdGtqe~F-----~~~----~~VltvS~H~~~~ffPgtG~~~e~G~g~G~-g~~vNvPL 225 (436)
T PTZ00063 156 GILELLKYHARVMYIDIDVHHGDGVEEAF-----YVT----HRVMTVSFHKFGDFFPGTGDVTDIGVAQGK-YYSVNVPL 225 (436)
T ss_pred HHHHHHHhCCeEEEEeCCCCCCcchHHHh-----ccC----CCeEEEEeccCCCcCCCCCCccccCCCCCC-ceEEEeeC
Confidence 46777777789999999995 5677643 332 333333333211111111234444421000 01255554
Q ss_pred EEEEecccccc----cc----ccccccCCCcEEEEEecCcccCC---CCCcccccchHHHHHHHHHhcCCcEEEEEecCC
Q 046067 326 EFNAAAISGSE----VQ----LENLEVRPGEALAVNFSMMLHHM---PDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEA 394 (521)
Q Consensus 326 eF~~V~~~~~e----v~----~~~L~~~~gEaLaVN~~~~LHhl---~desvs~~n~rd~~L~~vksL~PkvvtlvEqEa 394 (521)
.= .+ ..++ ++ +-.-..+| |+|+|.|-+--|.- ..-.++.... ..+++.+++++..++++.|..=
T Consensus 226 ~~-G~--~D~~Y~~~f~~ii~~~i~~f~P-d~IvvqaG~D~~~~DpLg~l~Lt~~g~-~~~~~~~~~~~~pil~l~gGGY 300 (436)
T PTZ00063 226 ND-GI--DDDSFVDLFKPVISKCVEVYRP-GAIVLQCGADSLTGDRLGRFNLTIKGH-AACVEFVRSLNIPLLVLGGGGY 300 (436)
T ss_pred CC-CC--CHHHHHHHHHHHHHHHHHHhCC-CEEEEECCccccCCCCCCCcccCHHHH-HHHHHHHHhcCCCEEEEeCccC
Confidence 31 00 0000 00 00112234 78999986655532 1112222233 4578889999988888887543
Q ss_pred CCCCCchhHHHHHHHHHHHHHH
Q 046067 395 NTNTAPFFHRFLETMNHYGAIF 416 (521)
Q Consensus 395 n~N~~~F~~RF~EaL~yYsAlF 416 (521)
+ +.....++.|.+++.
T Consensus 301 ~------~~~lar~w~~~t~~~ 316 (436)
T PTZ00063 301 T------IRNVARCWAYETGVI 316 (436)
T ss_pred C------chHHHHHHHHHHHHH
Confidence 2 234556666666665
No 93
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=29.03 E-value=4.5e+02 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=31.3
Q ss_pred hhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 245 TNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 245 ANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
....|++++...+.=.|+|+|-|.|. |...|+.+. + ++++|+.+.
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~ 61 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDP 61 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCH
Confidence 34567777665556689999999997 555666653 2 399998654
No 94
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=28.17 E-value=4.9e+02 Score=24.17 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=27.3
Q ss_pred HHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 248 AIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 248 AIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
.|++.+...+.=.|+|+|.|.|. +...++.+ ++ +++||+.+.
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~ 51 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGL----VAIRLKGK--GK---CILTTDINP 51 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhH----HHHHHHhc--CC---EEEEEECCH
Confidence 34555543333359999999994 44556654 33 899998754
No 95
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.09 E-value=6e+02 Score=25.99 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=31.7
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHhccCCCCCC-hhhhHHHHHHHHHHHHHhc
Q 046067 179 LCACAKAIENN--DMYAAESLMAESRQMVSVSGD-PIQRLGAYMLEGLIARLAS 229 (521)
Q Consensus 179 Ll~CA~AV~~g--d~~~A~~lL~~L~~~~S~~Gd-p~QRlAaYF~eAL~aRl~~ 229 (521)
|-..-+++-.. +.+.|+.++++++........ ..+.+-..+.+.|...+..
T Consensus 7 ~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 60 (272)
T TIGR00064 7 FEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKE 60 (272)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcc
Confidence 33333344444 457899999999876432221 2356778888888877654
No 96
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.01 E-value=5.5e+02 Score=24.70 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=29.0
Q ss_pred hHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046067 246 NGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDST 298 (521)
Q Consensus 246 NqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~ 298 (521)
-..++++++-.+.-+|+|+|-|.|..=..|.+.+ . +.-++++|+...
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~~~ 107 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEIVK 107 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeCCH
Confidence 3456666654445579999998876443333333 1 122799999764
No 97
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.55 E-value=2.8e+02 Score=30.16 Aligned_cols=88 Identities=26% Similarity=0.330 Sum_probs=61.2
Q ss_pred HHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccCCCcEEEEEec
Q 046067 276 IMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFS 355 (521)
Q Consensus 276 iqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~ 355 (521)
+..+++.|||| |+|.+-..+ ++---..+.+-|.++|..+|+.|+--
T Consensus 145 lrEk~r~pgg~-----TaVs~cGAN--PGmvswFVKqaLvdlAad~~ld~~ep--------------------------- 190 (481)
T COG5310 145 LREKRRNPGGP-----TAVSTCGAN--PGMVSWFVKQALVDLAADLGLDFEEP--------------------------- 190 (481)
T ss_pred HHHhccCCCCC-----eeeeecCCC--chHHHHHHHHHHHHHHHHhCcCccCC---------------------------
Confidence 57888899998 777654322 33445788999999999999887510
Q ss_pred CcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEecCCCCCC-CchhHHHHHHH
Q 046067 356 MMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNT-APFFHRFLETM 409 (521)
Q Consensus 356 ~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEqEan~N~-~~F~~RF~EaL 409 (521)
....|..+-+++|++.=|.+-+.|.+.-.+. |.-+.-|..++
T Consensus 191 ------------~~ddr~gwAkLmkK~GVkgiHiaeRdTqra~~Pkp~n~fwntW 233 (481)
T COG5310 191 ------------AQDDREGWAKLMKKAGVKGIHIAERDTQRAKKPKPFNGFWNTW 233 (481)
T ss_pred ------------cchhhHHHHHHHHHcCCceEEEEeeccccCCCCCCCcccccce
Confidence 0122567899999999999999999875433 33334444443
No 98
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=26.60 E-value=6.4e+02 Score=27.48 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=55.6
Q ss_pred cCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEecccc
Q 046067 256 ENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAAISG 334 (521)
Q Consensus 256 e~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~~~~ 334 (521)
.+.-+|+|++.|.|. +--.||.+. -+++||+.+.. .++.+.++ |+..|+. .+|..-. .
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~------al~~A~~n----~~~~~~~~v~~~~~d--~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEA------MVERAREN----ARRNGLDNVTFYHAN--L 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHH------HHHHHHHH----HHHcCCCceEEEEeC--h
Confidence 344689999999995 223455542 37999997643 24444333 3344553 4444332 2
Q ss_pred cc-ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 046067 335 SE-VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVE 391 (521)
Q Consensus 335 ~e-v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvE 391 (521)
.+ +....+.-..-++|++|=+.. ..+.++..+.+++|+-++.+.
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~-------------g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRA-------------GAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCc-------------ChHHHHHHHHhcCCCeEEEEE
Confidence 21 100001111225676664321 124567888889999988875
No 99
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.03 E-value=1.2e+02 Score=29.00 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCCCCCChhhhHHHHHHHHHHHHHhc
Q 046067 175 LKELLCACA-KAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLAS 229 (521)
Q Consensus 175 L~~LLl~CA-~AV~~gd~~~A~~lL~~L~~~~S~~Gdp~QRlAaYF~eAL~aRl~~ 229 (521)
+..+|+-|. ..+..++...|..++..|..+.-|..+-..|+..-|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 455666655 6677889999999999999998777778899999999998654433
No 100
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=25.65 E-value=2.2e+02 Score=29.14 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHhhhh-cCCCCCHHHHH-HHHHHHHHHHHHHHhccccccccc-CCChhhHHHHHHhCCCccccCCHHHHHHHHH
Q 046067 411 HYGAIFDSIDV-ALPRDSKDRIN-VEQHCLAREIVNLIACEGAERVER-HEPFGKWRSRFIMAGFTPYPLSPFVNATIKT 487 (521)
Q Consensus 411 yYsAlFDSLDa-~lpr~~~eR~~-vE~~~l~reI~NiVAcEG~eRvER-hE~~~~Wr~Rm~~AGF~~~plS~~~~~qak~ 487 (521)
.+.-.-+-|.. .++-..++|.. +|. --|+|.|+|+..+.+..-+ +-+-..=...|..|||..-|+.+ +..|+..
T Consensus 72 ~~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~e 148 (234)
T COG1500 72 PDEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQE 148 (234)
T ss_pred HHHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHH
Confidence 33333344432 23334455543 554 5899999999998776544 56666778889999999999865 5566666
Q ss_pred HHhc
Q 046067 488 LLEN 491 (521)
Q Consensus 488 LL~~ 491 (521)
.|+.
T Consensus 149 vlK~ 152 (234)
T COG1500 149 VLKA 152 (234)
T ss_pred HHHH
Confidence 6654
No 101
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.70 E-value=66 Score=33.11 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=18.4
Q ss_pred hccCceEEEecccCCccchHHHHHHHhcCC
Q 046067 254 KDENKIHIIDFLIAQGSQWIILIMALASRP 283 (521)
Q Consensus 254 ~ge~~VHIIDf~I~~G~QWpsLiqaLA~Rp 283 (521)
.|.+.|||||+ +.+ ++ .+|..+++-.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48899999999 455 66 5566665543
No 102
>PRK07004 replicative DNA helicase; Provisional
Probab=24.26 E-value=1.5e+02 Score=32.87 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=41.1
Q ss_pred CceEEEecccCCccchHHHHHHHhcCCCCCCeE---EEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceE
Q 046067 257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHI---RITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFE 326 (521)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~L---RITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFe 326 (521)
..++|.|..-..=.+..+-+..|..+.+++..+ .|+-|..+.....+...+.++-+.|..+|+.+++|+=
T Consensus 296 ~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 296 AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 468887776332234445555666654444322 2223322221122445688999999999999999964
No 103
>PRK10867 signal recognition particle protein; Provisional
Probab=24.11 E-value=1e+03 Score=26.41 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHhccCC----CCC-ChhhhHHHHHHHHHHHHHhcCCcchh-------hhhccCCc-------hhhHHHH
Q 046067 190 DMYAAESLMAESRQMVS----VSG-DPIQRLGAYMLEGLIARLASSGSSIY-------KALRCKET-------ATNGAIA 250 (521)
Q Consensus 190 d~~~A~~lL~~L~~~~S----~~G-dp~QRlAaYF~eAL~aRl~~sg~~~y-------kaL~~~~P-------tANqAIl 250 (521)
+...|..+++.+++.+. +.+ +|-|.+..+..+.|...+......+- -.+.+..| ++|-|..
T Consensus 44 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 44 NLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 56889999999987543 122 46788888899999888754221110 00112222 3343332
Q ss_pred hhhhccCceEEEecccCC
Q 046067 251 EAMKDENKIHIIDFLIAQ 268 (521)
Q Consensus 251 EA~~ge~~VHIIDf~I~~ 268 (521)
=+-+...+|.+||.|.-.
T Consensus 124 l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 124 LKKKKKKKVLLVAADVYR 141 (433)
T ss_pred HHHhcCCcEEEEEccccc
Confidence 111224789999999744
No 104
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=23.84 E-value=45 Score=27.54 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=16.6
Q ss_pred CChhhHHHHHHhCCCccccC
Q 046067 458 EPFGKWRSRFIMAGFTPYPL 477 (521)
Q Consensus 458 E~~~~Wr~Rm~~AGF~~~pl 477 (521)
|+..+-|.+|+++|++|+.+
T Consensus 3 ~RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHHcCCCccee
Confidence 34566799999999999987
No 105
>PRK03646 dadX alanine racemase; Reviewed
Probab=23.46 E-value=1.8e+02 Score=31.03 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=33.1
Q ss_pred ceEE-EecccC-Cccc---hHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHH
Q 046067 258 KIHI-IDFLIA-QGSQ---WIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLAD 319 (521)
Q Consensus 258 ~VHI-IDf~I~-~G~Q---WpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~ 319 (521)
+||| ||-|++ .|+. ++.+++.+.. .|.|+|+||-.--.. ......+.+.+.+|.+
T Consensus 118 ~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~---ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 118 DIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFAR---ADHPDGISEAMARIEQ 177 (355)
T ss_pred EEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCC---CCCCCHHHHHHHHHHH
Confidence 6898 899985 4764 5666666644 357999999643221 1111235555666644
No 106
>PTZ00346 histone deacetylase; Provisional
Probab=23.35 E-value=58 Score=36.00 Aligned_cols=148 Identities=11% Similarity=0.051 Sum_probs=76.3
Q ss_pred HHhhhhccCceEEEeccc--CCccchHHHHHHHhcCCCCCCeEEEeeecC-CCccccCCchHHHHHHHHHHHHHHcCCce
Q 046067 249 IAEAMKDENKIHIIDFLI--AQGSQWIILIMALASRPGGPPHIRITGIDD-STAAYARGGGLEIVGQRLSKLADLYKVPF 325 (521)
Q Consensus 249 IlEA~~ge~~VHIIDf~I--~~G~QWpsLiqaLA~RpgGPP~LRITgI~~-~~s~~~~~~~L~~~G~rL~~fA~~lgvpF 325 (521)
|+.+.+..+||=|||||+ |.|+|. ++... |.+-.-.|.. +...+.-.+...++|..-- ..-.+|||+
T Consensus 174 a~~ll~~~~RVliID~DVHHGnGTqe-----iF~~d----p~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G-~g~~vNVPL 243 (429)
T PTZ00346 174 ILELLKCHDRVLYVDIDMHHGDGVDE-----AFCTS----DRVFTLSLHKFGESFFPGTGHPRDVGYGRG-RYYSMNLAV 243 (429)
T ss_pred HHHHHHcCCeEEEEeCCCCCCchHHH-----HHcCC----CCeEEEEecCCCCCCCCCCCCccccCCCCC-ceeEEeeeC
Confidence 455666678999999999 556884 34433 4444444432 2112211233455553100 011245554
Q ss_pred EEEEecccccc----cc----ccccccCCCcEEEEEecCcccCC---CCCcccccchHHHHHHHHHhcCCcEEEEEecCC
Q 046067 326 EFNAAAISGSE----VQ----LENLEVRPGEALAVNFSMMLHHM---PDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEA 394 (521)
Q Consensus 326 eF~~V~~~~~e----v~----~~~L~~~~gEaLaVN~~~~LHhl---~desvs~~n~rd~~L~~vksL~PkvvtlvEqEa 394 (521)
.=.. ...+ ++ +-.-..+| ++|+|.|-+--|.- ..-.++... -..+.+.+++++.+++++.|..=
T Consensus 244 ~~G~---~D~~Yl~~f~~ii~p~l~~F~P-dlIvvsaG~Da~~~DpLg~l~LT~~g-~~~~~~~l~~~~~plv~vleGGY 318 (429)
T PTZ00346 244 WDGI---TDFYYLGLFEHALHSIVRRYSP-DAIVLQCGADSLAGDRLGLLNLSSFG-HGQCVQAVRDLGIPMLALGGGGY 318 (429)
T ss_pred CCCc---CHHHHHHHHHHHHHHHHHhcCC-CEEEEECCccCCCCCCCCCceeCHHH-HHHHHHHHHhcCCCEEEEeCCcC
Confidence 3110 0000 00 00112234 68889887766643 111222222 34578888999988888887543
Q ss_pred CCCCCchhHHHHHHHHHHHHHHH
Q 046067 395 NTNTAPFFHRFLETMNHYGAIFD 417 (521)
Q Consensus 395 n~N~~~F~~RF~EaL~yYsAlFD 417 (521)
+ +....+++.|.++++-
T Consensus 319 ~------~~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 319 T------IRNVAKLWAYETSILT 335 (429)
T ss_pred C------ccHHHHHHHHHHHHHc
Confidence 2 2446777788777753
No 107
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.82 E-value=2e+02 Score=24.72 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcEEEEEec
Q 046067 313 RLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQ 392 (521)
Q Consensus 313 rL~~fA~~lgvpFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~PkvvtlvEq 392 (521)
.|+.+.+..|..+++-......+++.......+| +.|++++.+.-+ ...-.++.+.+|..+|++.+++
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~p-d~V~iS~~~~~~---------~~~~~~l~~~~k~~~p~~~iv~-- 86 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAERP-DVVGISVSMTPN---------LPEAKRLARAIKERNPNIPIVV-- 86 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTC-SEEEEEESSSTH---------HHHHHHHHHHHHTTCTTSEEEE--
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCC-cEEEEEccCcCc---------HHHHHHHHHHHHhcCCCCEEEE--
Confidence 4555666668766665444433333222222233 468887743211 1223568888999999987776
Q ss_pred CCCCCCCchhHHHHHHHHHH
Q 046067 393 EANTNTAPFFHRFLETMNHY 412 (521)
Q Consensus 393 Ean~N~~~F~~RF~EaL~yY 412 (521)
.++.+.....+.|.+|
T Consensus 87 ----GG~~~t~~~~~~l~~~ 102 (121)
T PF02310_consen 87 ----GGPHATADPEEILREY 102 (121)
T ss_dssp ----EESSSGHHHHHHHHHH
T ss_pred ----ECCchhcChHHHhccC
Confidence 2333344444555554
No 108
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.63 E-value=1.1e+03 Score=26.20 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCC----CCC-ChhhhHHHHHHHHHHHHHhc
Q 046067 175 LKELLCACAKAIENN--DMYAAESLMAESRQMVS----VSG-DPIQRLGAYMLEGLIARLAS 229 (521)
Q Consensus 175 L~~LLl~CA~AV~~g--d~~~A~~lL~~L~~~~S----~~G-dp~QRlAaYF~eAL~aRl~~ 229 (521)
+.+.|-+--.|+-.. +...|..+++.++..+- +.| +|-|.+.....+.|...+.+
T Consensus 23 i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~ 84 (437)
T PRK00771 23 VKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGE 84 (437)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 444444444444444 46789999998876432 223 46677888888888776644
No 109
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=21.17 E-value=3.5e+02 Score=26.40 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=42.7
Q ss_pred ceEE-Eeccc---CCccc---hHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHc----CCceE
Q 046067 258 KIHI-IDFLI---AQGSQ---WIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLY----KVPFE 326 (521)
Q Consensus 258 ~VHI-IDf~I---~~G~Q---WpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~l----gvpFe 326 (521)
.||| ||=|. -.|+. ++.+++.+.. -|.|+|.||..-.+.........+.-+++.++++.+ |++++
T Consensus 118 ~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 193 (222)
T cd00635 118 DVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNLK 193 (222)
T ss_pred cEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6888 78774 36875 4555555543 356888888542111111123455566666666665 57777
Q ss_pred EEEecccc
Q 046067 327 FNAAAISG 334 (521)
Q Consensus 327 F~~V~~~~ 334 (521)
+-.+...+
T Consensus 194 ~is~G~t~ 201 (222)
T cd00635 194 ELSMGMSG 201 (222)
T ss_pred EEECcccH
Confidence 76665543
No 110
>PRK09864 putative peptidase; Provisional
Probab=20.91 E-value=1.9e+02 Score=31.07 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEecccccc---ccccccccCCCcEEEEEecCccc
Q 046067 283 PGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSE---VQLENLEVRPGEALAVNFSMMLH 359 (521)
Q Consensus 283 pgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~e---v~~~~L~~~~gEaLaVN~~~~LH 359 (521)
-|+-|.||+ +|...-. -..+-++|.+.|++.|||+++........+ +....-++ -+++|..+.+--
T Consensus 247 lG~Gp~i~~--~D~~~i~------~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gv---pt~~isiP~RY~ 315 (356)
T PRK09864 247 LGQGPGLML--FDKRYFP------NQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGR---PVVALCLPTRYL 315 (356)
T ss_pred cCCCCeEEE--ccCCccC------CHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCC---cEEEEeeccCcC
Confidence 466677763 2322111 135678999999999999998876533332 22221122 368888888888
Q ss_pred CCCCCcccc---cchHHHHHHHHHhcCC
Q 046067 360 HMPDESVSI---QNHRDRLLRLVKGLSP 384 (521)
Q Consensus 360 hl~desvs~---~n~rd~~L~~vksL~P 384 (521)
|-+-|.++. ++..+-+-..++.|++
T Consensus 316 Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~ 343 (356)
T PRK09864 316 HANSGMISKADYDALLTLIRDFLTTLTA 343 (356)
T ss_pred CCcceEeEHHHHHHHHHHHHHHHHhcch
Confidence 888776653 2333333344555543
No 111
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=20.09 E-value=2e+02 Score=28.88 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=40.4
Q ss_pred ceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCc-eEEEEec
Q 046067 258 KIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVP-FEFNAAA 331 (521)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvp-FeF~~V~ 331 (521)
..|+||.|-|-|+ |.+.=|++. |.+++|=|++..-. -.-|...++.+|++ .+++.-.
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk----------~~FL~~~~~eL~L~nv~i~~~R 125 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKK----------IAFLREVKKELGLENVEIVHGR 125 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchH----------HHHHHHHHHHhCCCCeEEehhh
Confidence 4699998876665 888777654 67889999864321 14577788888988 7766543
Done!