BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046070
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C9A2|ENDOV_MOUSE Endonuclease V OS=Mus musculus GN=Endov PE=1 SV=2
Length = 338
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 152/247 (61%), Gaps = 11/247 (4%)
Query: 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
L+ W Q LK R++ D W S + L+ +GGVD+SF K D
Sbjct: 14 LSLWKGEQARLKARVVDRDTEAWQRDPSFSG-----------LQKVGGVDVSFVKGDSVR 62
Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
AC +VVL L++VYED ++ L+ PYV GFLAFRE P L+ L+ ++++ PQV
Sbjct: 63 ACASLVVLSYPELKVVYEDSRMVGLKAPYVSGFLAFREVPFLVELVQRLQEKEPDLMPQV 122
Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
++VDGNG+LH RGFG+A H+GVL L IGV K L VDGL ++ + + D
Sbjct: 123 VLVDGNGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNALHKEKIVLLQAGGDT 182
Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIR 291
PL+G SG+ G+A+RS + KP+++SVGH ISL+ AV + C++R+PEPIRQADIR
Sbjct: 183 FPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIR 242
Query: 292 SRDYLQK 298
SR+Y+++
Sbjct: 243 SREYIRR 249
>sp|Q8N8Q3|ENDOV_HUMAN Endonuclease V OS=Homo sapiens GN=ENDOV PE=2 SV=1
Length = 282
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 40 ALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGG 99
AL + + L+ W Q LK ++ D W + + L+ +GG
Sbjct: 2 ALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSG-----------LQRVGG 50
Query: 100 VDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDN 159
VD+SF K D AC +VVL L++VYE+ ++ L PYV GFLAFRE P LL L+
Sbjct: 51 VDVSFVKGDSVRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQ 110
Query: 160 MKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQ 219
++++ PQVL+VDGNG+LH RGFG+A H+GVL +L +GV K L VDGL ++ + +
Sbjct: 111 LREKEPGLMPQVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHK 170
Query: 220 LLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKY 279
D PL+G SG+ G+A+RS + +P++ISVGH +SL+ AV + C++
Sbjct: 171 EKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRF 230
Query: 280 RVPEPIRQADIRSRDYLQK 298
R+PEP+RQADI SR++++K
Sbjct: 231 RIPEPVRQADICSREHIRK 249
>sp|Q10348|YDA6_SCHPO Putative endonuclease C1F12.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1F12.06c PE=3 SV=1
Length = 252
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 133/214 (62%), Gaps = 13/214 (6%)
Query: 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLL-RLQVPYVPGFLAFREAPV 152
++Y+ G+D+SF K P A +V+ DL+ I+Y+DY + +L+ YVPGFL+FRE
Sbjct: 36 IRYVVGLDISFDKSSPK-AVSALVIYDLEQRMIIYKDYLCIEKLEEDYVPGFLSFREIKW 94
Query: 153 LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212
L LL+++ + F +++VDGNG+LHP GFGLA H+GVL NL +GV KN H GL
Sbjct: 95 YLPLLNHI---PHQFRIDIILVDGNGVLHPVGFGLACHLGVLLNLPVVGVAKNYLHCVGL 151
Query: 213 THS------GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISL 266
T S +++ + K ++ +I + S G A+ ++ ++ +P+++S+G+ ++L
Sbjct: 152 TESLDAHRETLKKHVLKKTTDHPILIHSIDQSSEILGAAVWTSSNSKRPVYVSIGNQMNL 211
Query: 267 DTAVMIVKM--TCKYRVPEPIRQADIRSRDYLQK 298
+ ++ +V+ + RVPEPIRQADI ++ L +
Sbjct: 212 EQSIQLVQKCSSSHSRVPEPIRQADIYAKFVLSQ 245
>sp|B8DZX0|NFI_DICTD Endonuclease V OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724)
GN=nfi PE=3 SV=1
Length = 228
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 40/243 (16%)
Query: 56 TEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGC 115
++Q+EL K++I ED F KE L+YIGGVD S E G
Sbjct: 17 VKLQEELSKKIILEDKF--------------KE-----LRYIGGVDTSSLGEK---IVGI 54
Query: 116 IVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175
I +L +TL++V +L + PY+PGFL+FRE PV+L + +K + P +L+ D
Sbjct: 55 ITILVFKTLELVEISVALSEVNFPYIPGFLSFREGPVILRAWEKLKIK-----PDLLIFD 109
Query: 176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLM 235
G G+ HPR G+ASHIG + ++ +IG KN+ G + D ++ + E I
Sbjct: 110 GQGIAHPRRLGIASHIGYVLDVPSIGCAKNI-------LVGFYKEPDKRKGSFEYIY--- 159
Query: 236 GGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQADIRSRD 294
G G A+R T D +KP+F+S+GH ISL+T++ +I+K + KYR+PEP+R A + S+
Sbjct: 160 -HKGEIVGAAVR-TKDNVKPVFVSLGHKISLNTSIDIILKTSTKYRIPEPVRLAHLYSKR 217
Query: 295 YLQ 297
L
Sbjct: 218 MLN 220
>sp|B5YD80|NFI_DICT6 Endonuclease V OS=Dictyoglomus thermophilum (strain ATCC 35947 /
DSM 3960 / H-6-12) GN=nfi PE=3 SV=1
Length = 228
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 40/243 (16%)
Query: 56 TEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGC 115
+Q E+ +++I ED F L+Y+GGVD S S ED G
Sbjct: 17 VRLQKEISEKIIKEDAFKN-------------------LRYVGGVDTS-SIEDK--IAGV 54
Query: 116 IVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175
IVVL+ TL+++ + ++ PY+PGFL+FRE P++L +N+K + P +L+ D
Sbjct: 55 IVVLEFNTLEVLEVSIEISQVNFPYIPGFLSFREGPIILKAWENLKIK-----PDLLIFD 109
Query: 176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLM 235
G G+ HPR G+ASH+G + ++ +IG K + GV + D K + E I
Sbjct: 110 GQGIAHPRRLGIASHVGYVLDVPSIGCAKKI-------LVGVYKEPDKKRGSFEYIYI-- 160
Query: 236 GGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQADIRSRD 294
G +R T D +KP+F+S+GH ISL T++ +I+K + KYR+PEP+R A I S+
Sbjct: 161 --DNEIVGAVVR-TKDNVKPVFVSLGHKISLSTSIEIILKTSTKYRLPEPVRLAHIYSKK 217
Query: 295 YLQ 297
L
Sbjct: 218 ALN 220
>sp|O66824|NFI_AQUAE Endonuclease V OS=Aquifex aeolicus (strain VF5) GN=nfi PE=3 SV=3
Length = 222
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 122/240 (50%), Gaps = 40/240 (16%)
Query: 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSK--EDP 109
L + +IQ E K++I D F E+ E IGG+D++F K E+P
Sbjct: 6 LEKLKKIQLECAKKVIARDDF---------------EKVET----IGGMDLTFEKINENP 46
Query: 110 SIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYP 169
+ A +VV++L+TL+ VY+ + PY+P FLAFRE P+LL L + K + P
Sbjct: 47 TRAWASLVVVELKTLKPVYQHVVKDIVDFPYIPTFLAFREMPLLLKLYETAKVK-----P 101
Query: 170 QVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENN-N 228
V +DG G+ HPRG G+ASH GV T+GV K+ + AKE
Sbjct: 102 DVYFIDGQGIAHPRGCGIASHFGVETGEVTVGVAKS------------KLFGYAKEPAPQ 149
Query: 229 EDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQA 288
+ G G +R T D P+++SVGH ISL TA+ +V T KYRVPEP R A
Sbjct: 150 RGSYTYLKYKGKIIGAVVR-TKDNTAPVYVSVGHRISLKTAIDLVLKTSKYRVPEPTRLA 208
>sp|B7K379|NFI_CYAP8 Endonuclease V OS=Cyanothece sp. (strain PCC 8801) GN=nfi PE=3 SV=1
Length = 229
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 127/240 (52%), Gaps = 40/240 (16%)
Query: 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
L + IQ+ LKK++I ED F+ + Y+ GVD+ F +++ +
Sbjct: 13 LEEAKTIQENLKKKVILEDQFSE-------------------VNYVAGVDVGF-RDNYQL 52
Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
I VL L++V + L PY+PGFL+FRE P +L L+ +K P +
Sbjct: 53 TQAAIAVLSFPKLELVETQIACLPTTFPYIPGFLSFREIPAILKALEKLK-----IPPNI 107
Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
++ DG G+ HPR G+ASH+GVL +L TIGV K+L G + + ++ N + +
Sbjct: 108 ILCDGQGIAHPRRLGIASHLGVLIDLPTIGVAKSL-------LVGKHEEVPPEKGNWQPL 160
Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQAD 289
I G GV +RS + +KPI++S+GH ISL TA+ V M C KYR+PE R AD
Sbjct: 161 I----DKGEIIGVVLRSRTN-IKPIYVSIGHKISLPTAIDYV-MQCLTKYRLPETTRWAD 214
>sp|Q3MEZ3|NFI_ANAVT Endonuclease V OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=nfi PE=3 SV=1
Length = 221
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
IQ+EL+ ++IT+D FT + +Y+ GVDM F + D +I+ +
Sbjct: 19 IQEELRHQVITQDQFTQPV------------------QYVAGVDMGF-EADGTISRAAVA 59
Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
VL LQ+V + PY+PGFL+FRE P +L L+ ++ + P +++ DG
Sbjct: 60 VLSFPDLQVVETSLAYRPTSFPYIPGFLSFREIPAVLDALEKIQTK-----PDIILCDGQ 114
Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNL---HHVDGLTHSGVRQLLDAKENNNEDIIPL 234
G+ HPR G+ASH+GVL N+ TIGV K+L H +L D K + PL
Sbjct: 115 GIAHPRRLGIASHLGVLLNIPTIGVAKSLLIGRH---------EELADTKGSWQ----PL 161
Query: 235 MGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQAD 289
+ G G +R T +KP+++S GH ISL TA+ +++ T KYR+PE R AD
Sbjct: 162 I-HRGEIIGAVLR-TRVGVKPVYVSSGHKISLPTAIDYVLRCTPKYRLPETTRVAD 215
>sp|Q8YPV5|NFI_NOSS1 Endonuclease V OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nfi
PE=3 SV=1
Length = 221
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
IQ+EL+ ++ITED FT + +Y+ GVDM F + D +I+ +
Sbjct: 19 IQEELRHQVITEDQFTQPV------------------QYVAGVDMGF-EADGTISRAAVA 59
Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
VL LQ++ + + PY+PGFL+FRE P +L L ++ + P +++ DG
Sbjct: 60 VLSFPDLQVIETNLAYRPTSFPYIPGFLSFREIPAVLDALAKVQTK-----PDIILCDGQ 114
Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNL---HHVDGLTHSGVRQLLDAKENNNEDIIPL 234
G+ HPR G+ASH+GVL N+ TIGV K+L H +L D K + PL
Sbjct: 115 GIAHPRRLGIASHLGVLLNIPTIGVAKSLLIGKH---------EELADTKGSWQ----PL 161
Query: 235 MGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQAD 289
+ G G +R T +KP+++S GH ISL TA+ +++ T KYR+PE R AD
Sbjct: 162 I-HRGEIIGAVLR-TRVGVKPVYVSSGHKISLPTAIDYVLRCTPKYRLPETTRVAD 215
>sp|B2IWL4|NFI_NOSP7 Endonuclease V OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=nfi PE=3 SV=1
Length = 221
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 37/241 (15%)
Query: 50 AQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDP 109
+ L + IQ++L+ ++ITED + E ++Y+ GVDM F + D
Sbjct: 11 STLEEAIVIQEKLRDQVITED------------------QLEEPIQYVAGVDMGF-EADG 51
Query: 110 SIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYP 169
+I+ + VL LQ++ + PYVPGFL+FRE P +L L+ ++ P
Sbjct: 52 TISRAAVAVLSFPDLQVIETSLAHRPTTFPYVPGFLSFREIPAVLDALEKIQTT-----P 106
Query: 170 QVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNE 229
+++ DG G+ HPR G+ASH+G+L ++ TIGV K+ G + L + +++
Sbjct: 107 NIILCDGQGIAHPRRLGIASHLGLLIDMPTIGVAKS-------RLVGKYEELAETKGSSQ 159
Query: 230 DIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQA 288
+I +G T GV +RS +KP++IS GH ISL TA+ +++ T KYR+PE R A
Sbjct: 160 PLI----YNGETVGVVLRSR-TGVKPLYISSGHRISLPTAIDYVLRCTPKYRLPETTRIA 214
Query: 289 D 289
D
Sbjct: 215 D 215
>sp|C5CGG9|NFI_KOSOT Endonuclease V OS=Kosmotoga olearia (strain TBF 19.5.1) GN=nfi PE=3
SV=1
Length = 226
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 114/204 (55%), Gaps = 20/204 (9%)
Query: 97 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSL 156
+ GVD+SF +++ + C++V+ TL+++ Y + +PYV GFL+FRE P+ +
Sbjct: 39 VAGVDVSFPQKNLGL---CVIVVMDDTLKVIESVYHTQEVHIPYVSGFLSFREGPIFIET 95
Query: 157 LDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSG 216
+ +K P + DG G+ HPRG G+A+H+G+L ++GV K+ H+ G +
Sbjct: 96 VKKLK-----IVPDLFFFDGQGIAHPRGLGIAAHMGLLLEKPSLGVAKS--HLFGSYNEP 148
Query: 217 VRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKM 275
R N D + +G G +R+ +T KP+F+S GH + +DTA+ + +K
Sbjct: 149 GR--------NKGDFSYMYNKTGEIIGTVLRTKKNT-KPVFVSPGHMMDVDTAMSLTLKY 199
Query: 276 TCKYRVPEPIRQADIRSRDYLQKH 299
T KYR+PEP RQA I ++ + H
Sbjct: 200 TGKYRLPEPTRQAHILTQRLRKNH 223
>sp|Q6MDK2|NFI_PARUW Endonuclease V OS=Protochlamydia amoebophila (strain UWE25) GN=nfi
PE=3 SV=1
Length = 235
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 126/252 (50%), Gaps = 37/252 (14%)
Query: 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS- 110
+ + T IQ EL R+ ED F N P ++ GG+D+S + DP
Sbjct: 17 IEKATIIQKELANRICLEDEF--NTP-----------------EFFGGMDVSNNLFDPKQ 57
Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
I ++LD + L + + + R PY+PGFL FREAP L+ L+++ K P
Sbjct: 58 IIYATAILLDSKMLSVQFHNSVSQRQTFPYIPGFLGFREAPALIDALESLPK-----LPD 112
Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED 230
++ VDG G+ HPR G+ASHIGVL N+ TIGV KN+ + G + D
Sbjct: 113 MIFVDGQGISHPRRLGIASHIGVLVNIPTIGVAKNILFGEPKKDLG---------SCVGD 163
Query: 231 IIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCK-YRVPEPIRQAD 289
+ + G G +R T KP+ IS GH +SL TA+ V K YR+PEP RQA
Sbjct: 164 YV-FLYAYGKEIGALVR-TKLRCKPLIISTGHRVSLRTAIEYVLNCVKGYRLPEPTRQAH 221
Query: 290 IRSRDYLQKHQS 301
+ + + ++ Q+
Sbjct: 222 LAANAFRKQSQA 233
>sp|Q9X7N2|NFI_STRCO Endonuclease V OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=nfi PE=3 SV=1
Length = 233
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 123/241 (51%), Gaps = 36/241 (14%)
Query: 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
+QDEL+ R++ ++ P T T GVD+++ E + V
Sbjct: 22 VQDELRARVVLDE---PGPPPGTGRVT--------------GVDVAYDDER-DVVAAAAV 63
Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
VLD TL +V E ++ R+ PYVPG LAFRE P +L+ L+ + P +++ DG
Sbjct: 64 VLDAGTLAVVAEATAVGRISFPYVPGLLAFREIPTVLAALEALP-----CPPGLVVCDGY 118
Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGG 237
GL HPR FGLASH+GVL L TIGV KN TH D + PL+ G
Sbjct: 119 GLAHPRRFGLASHLGVLTGLPTIGVAKNPFT---FTH-------DDPDTPRGSTSPLLAG 168
Query: 238 SGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVM-IVKMTCKYRVPEPIRQADIRSRDYL 296
+ G A+R T D +KP+F+SVGH + L A + +T YR+PE R+AD R L
Sbjct: 169 A-EEVGRAVR-TRDGVKPVFVSVGHRVGLGNACAHTLALTPAYRLPETTRRADALCRAAL 226
Query: 297 Q 297
+
Sbjct: 227 R 227
>sp|A5UWX7|NFI_ROSS1 Endonuclease V OS=Roseiflexus sp. (strain RS-1) GN=nfi PE=3 SV=1
Length = 222
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 54/247 (21%)
Query: 51 QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS 110
L + IQ ++ R+IT D ++ + GVD +S +
Sbjct: 12 SLAEARAIQQHIRTRIITHD-------------------AHGPIRTVAGVDTGYSGDS-- 50
Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQV--PYVPGFLAFREAPVLLSLLDNMKKRANHFY 168
A +VVL +L+++ DY++ R Q+ PYVPG+L+FREAP +L L +++
Sbjct: 51 -ALAAVVVLAFPSLEVL--DYAVARRQIDFPYVPGYLSFREAPAVLDALASLR-----IA 102
Query: 169 PQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNN 228
P +L+ DG+GL HPR G+ASH+GVL +L +IG K+ LL
Sbjct: 103 PDLLICDGHGLAHPRRCGIASHLGVLTDLPSIGCAKS--------------LLVGTHEPP 148
Query: 229 EDI----IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVP 282
D+ PL G G A+R+ P ++P+++S+GH ++L+TA+ V M C +YR+P
Sbjct: 149 PDVRGAWTPLH-DQGEVVGAALRTRPG-VRPVYVSIGHRVALETAIRFV-MACVTRYRLP 205
Query: 283 EPIRQAD 289
E R AD
Sbjct: 206 ETTRAAD 212
>sp|A7NSC5|NFI_ROSCS Endonuclease V OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=nfi PE=3 SV=1
Length = 222
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 46/242 (19%)
Query: 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
L + IQ+ ++ ++IT D F ++ + GVD +S +
Sbjct: 13 LGEARVIQERIRAQVITCDAFG-------------------PIRTVAGVDAGYSGDS--- 50
Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQV--PYVPGFLAFREAPVLLSLLDNMKKRANHFYP 169
A +VVL +LQ + DY++ R Q+ PYVPG+L+FREAP +L L +++ P
Sbjct: 51 ALAAVVVLAFPSLQAL--DYAVARRQISFPYVPGYLSFREAPAVLDALASLR-----ITP 103
Query: 170 QVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNE 229
+LM DG+GL HPR G+A H+GVL +L +IG K++ VR +++E
Sbjct: 104 DLLMCDGHGLAHPRRCGIACHLGVLTDLPSIGCAKSVLVGAHDPLPDVRGAWTPLRHDDE 163
Query: 230 DIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQ 287
+ G A+R+ P ++P+++SVGH +SL+TA+ V M C +YR+PE R
Sbjct: 164 IV-----------GAALRTRPG-VRPVYVSVGHRVSLETAIQFV-MACVTRYRLPETTRA 210
Query: 288 AD 289
AD
Sbjct: 211 AD 212
>sp|Q5YQW3|NFI_NOCFA Endonuclease V OS=Nocardia farcinica (strain IFM 10152) GN=nfi PE=3
SV=1
Length = 226
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 119/241 (49%), Gaps = 38/241 (15%)
Query: 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
+QD+L+ R++ + + + GVD ++ +A +V
Sbjct: 18 VQDDLRARVVAAN------------------PRPPVFATVAGVDSAYDDAAGLVAT-AVV 58
Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
VLD TL+ + + ++ PYVPG LAFRE P LS L+ ++ P +L+ D
Sbjct: 59 VLDTATLEPIESAVAHGPVRFPYVPGLLAFRELPTTLSALEQLRT-----TPDLLVCDAQ 113
Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGG 237
GL HPR FGLA H+GV L TIGV KN T G R + + E ++
Sbjct: 114 GLAHPRRFGLACHVGVRTGLPTIGVAKNAW--GAWTEPGRR-----RGDAAELVL----- 161
Query: 238 SGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQADIRSRDYL 296
G G+A+R T D +KP+F+SVGH I L TA ++ +T +YR PE RQAD R L
Sbjct: 162 DGEVVGLALR-TRDDVKPVFVSVGHHIDLPTAREQVLALTPRYRQPETTRQADRLCRAAL 220
Query: 297 Q 297
+
Sbjct: 221 R 221
>sp|Q6HGE0|NFI_BACHK Endonuclease V OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=nfi PE=3 SV=1
Length = 235
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 132/254 (51%), Gaps = 42/254 (16%)
Query: 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS- 110
+ ++++IQ EL R+ E+ F + EE+ ++I GVD+++ + +
Sbjct: 13 IQEFSKIQSELSPRIKLENNF---------------QIEEI--QFIAGVDLAYWNVNKTK 55
Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
CIV++D T ++V + YS + +PY+PGFLAFRE P+++ + + K+ P
Sbjct: 56 YGTCCIVIIDYGTKEVVEKVYSYGEIPIPYIPGFLAFRELPLIIEAVKKLTKQ-----PD 110
Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN---LHHVDGLTHSGVRQLLDAKENN 227
+ DGNG LH R G+A+H L N TIGV K+ + VD + ++ N
Sbjct: 111 IYFFDGNGYLHYRHMGIATHASFLLNKPTIGVAKSYLKIRDVDFIMPENLKGSYTDIVIN 170
Query: 228 NEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC---KYRVPEP 284
NE +G +R+T + +KPIF+S G+ I LDT+ IV M C + R+P P
Sbjct: 171 NE-----------VYGRTLRTTKN-VKPIFVSCGNWIDLDTSTEIV-MNCINNESRLPIP 217
Query: 285 IRQADIRSRDYLQK 298
+R AD+ + +K
Sbjct: 218 VRLADLETHKMRKK 231
>sp|A8A9B8|NFI_IGNH4 Endonuclease V OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386
/ JCM 14125) GN=nfi PE=3 SV=1
Length = 211
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 27/204 (13%)
Query: 97 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSL 156
+GG+D+S+ + + + ++D +TL+ + Y + R+ +PYVPGFLAFREAP+ L+L
Sbjct: 33 VGGLDVSYKGD---VGVSALSLIDYKTLRPLKHYYVVARVPIPYVPGFLAFREAPLHLTL 89
Query: 157 LDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSG 216
+ +K +L+VDG+G HPRG G+ASH+GV + + T+GV K
Sbjct: 90 IKKVKGY------DLLLVDGHGRTHPRGLGIASHVGVTSGVPTVGVAK------------ 131
Query: 217 VRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMT 276
R+L+ +E E + G +R L ++SVGHC+SL+TA IVK
Sbjct: 132 -RRLVGEEERCGERE--CLVHEGKVVAYVIRRGKQKL---YVSVGHCVSLETAYQIVKRL 185
Query: 277 CKYRVPEPIRQADIRSRDYLQKHQ 300
R+PEPI AD SR + Q
Sbjct: 186 TVRRLPEPIAWADRISRSLARSLQ 209
>sp|Q60CT7|NFI_METCA Endonuclease V OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=nfi PE=3 SV=1
Length = 222
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 37/229 (16%)
Query: 74 WNLPNSTTTNTSTKEEEEVL--------LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQ 125
W+L N T+ VL ++ + GVD+ F ++ I + VLD +L+
Sbjct: 11 WDLSPREAANLQTRLRPLVLAEDALPDEIRTVAGVDVGF-EDHGRITRAAVAVLDFPSLR 69
Query: 126 IVYEDYSLLR--LQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPR 183
D +++R + PYVPG L+FRE P LL L+ + + P +++VDG+G HPR
Sbjct: 70 --PSDQAIVRRPTRFPYVPGLLSFRELPALLEALERL-----NLLPGLILVDGHGYAHPR 122
Query: 184 GFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED---IIPLMGGSGS 240
FG+A H+GVL + TIGVGK +L+ ED IPL+ G
Sbjct: 123 RFGIACHLGVLTGIPTIGVGKT-------------RLVGTHGELAEDRGSWIPLIDGD-E 168
Query: 241 TWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQA 288
T G +R T ++P+++SVGH +SL TAV +++ T +YR+PE RQA
Sbjct: 169 TVGAVVR-TRRGVQPVYVSVGHRLSLPTAVDWVLRCTPRYRLPETTRQA 216
>sp|A5GD74|NFI_GEOUR Endonuclease V OS=Geobacter uraniireducens (strain Rf4) GN=nfi PE=3
SV=1
Length = 234
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 29/198 (14%)
Query: 97 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSL 156
+ GVD +++ E+ V+ DL TL V + + R +PY+PGFL+FRE P L
Sbjct: 38 VAGVDAAYAGEE---IVAVAVLFDLATLTPVARSFVVARPALPYIPGFLSFREGPHLAEA 94
Query: 157 LDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNL---HHVDGLT 213
+ + KR P +L+VDG G+ H + FGLA H+GV + IG K+ +V+
Sbjct: 95 VRRLSKR-----PDLLIVDGQGIAHLKRFGLACHLGVELGIPAIGCAKSRLVGEYVEPAA 149
Query: 214 HSGVRQ-LLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-M 271
G R LLD KE G +R T ++P+F+S GH I++D AV M
Sbjct: 150 ERGSRTLLLDRKE---------------AVGAVLR-TRSNVRPVFVSPGHLITIDEAVAM 193
Query: 272 IVKMTCKYRVPEPIRQAD 289
+++ T +R+PEP R+AD
Sbjct: 194 VLRTTAGFRLPEPQREAD 211
>sp|C1DQ77|NFI_AZOVD Endonuclease V OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=nfi PE=3 SV=1
Length = 221
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 118/237 (49%), Gaps = 46/237 (19%)
Query: 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
+Q EL R++ D F P+ L I GVD+ F +E I V
Sbjct: 19 LQQELAGRVVLRDDF----PD---------------LGLIAGVDVGF-EEGGGITRAAAV 58
Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
+LD TL ++ E + +PY+PG L+FRE P +L L + + P ++ DG
Sbjct: 59 LLDANTLGVLAESLVRIPTSMPYIPGLLSFRELPAVLRALAELPR-----VPDLVFCDGQ 113
Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNL---HHVDGLTHSGVRQLLDAKENNNEDIIPL 234
G+ HPR G+A+H+GV++ L TIGV K + H + +H G D +PL
Sbjct: 114 GIAHPRRLGIAAHLGVVSGLPTIGVAKKILVGTHAELGSHRG-------------DQVPL 160
Query: 235 MGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQAD 289
M G G +RS D ++P+ +S GH +SL +A +V M C +YR+PEP R AD
Sbjct: 161 M-YRGEVLGAVLRSK-DRVRPLIVSPGHRVSLASAPRLV-MACVTRYRLPEPTRLAD 214
>sp|B6IUZ1|NFI_RHOCS Endonuclease V OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
GN=nfi PE=3 SV=1
Length = 240
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 18/197 (9%)
Query: 94 LKYIGGVDMSFSKEDPSIAC-GCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPV 152
++ + GVD+S DPS +V+LD T +++ ++ +PYVPGFL FRE P
Sbjct: 39 VRTVAGVDVSQFGRDPSGRVFAAVVLLDAATREVLEVGTAMRVAPIPYVPGFLGFREVPA 98
Query: 153 LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212
LL+ + +R P +++VDG+G HPRG G+A+H+GVL ++ IGV K++ L
Sbjct: 99 LLAAFGALSRR-----PDLVLVDGHGTSHPRGLGIAAHLGVLLDIPAIGVAKSI-----L 148
Query: 213 THSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-M 271
+ +L + + +PL+ G T +RS D + P+++S GH I + AV
Sbjct: 149 VGAPAGELGGTRGSR----VPLV-WQGRTIATVLRSK-DRVAPLYVSTGHRIDEEAAVDW 202
Query: 272 IVKMTCKYRVPEPIRQA 288
+++ +YR+PEP R+A
Sbjct: 203 TLRLGGRYRLPEPTRRA 219
>sp|Q7N959|NFI_PHOLL Endonuclease V OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=nfi PE=3 SV=1
Length = 222
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 95 KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLL 154
K I G D+ F ++ +I I VL L++V + + +PY+PG L+FRE P L+
Sbjct: 28 KLIAGADVGFERQG-AITRAAIAVLSYPALELVEYQIARIETTLPYIPGLLSFREYPALM 86
Query: 155 SLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTH 214
+ +K + P ++MVDG+G+ HPR G+ASH G+LAN+ TIGV K
Sbjct: 87 AAWQLLK-----YKPDLVMVDGHGIAHPRRLGVASHFGLLANVPTIGVAKR-------RL 134
Query: 215 SGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVK 274
G +LL + + + ++ G W R P++IS GH ISLD+A++ V+
Sbjct: 135 CGESELLGEQPGSCQPLLDKEEQIGWVWRSKKRCN-----PLYISTGHRISLDSALLWVE 189
Query: 275 MTCK-YRVPEPIRQAD 289
K YR+PE R AD
Sbjct: 190 RCMKGYRLPETTRWAD 205
>sp|Q82MH6|NFI_STRAW Endonuclease V OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=nfi PE=1 SV=1
Length = 229
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 124/245 (50%), Gaps = 36/245 (14%)
Query: 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
+QDEL+ R+I ++ P T T GVD+++ E + V
Sbjct: 20 VQDELRGRVILDE---PGPPPGTGRVT--------------GVDVAYDDER-DVVVAAAV 61
Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
VLD TL +V E ++ + PYVPG LAFRE P +L+ LD + P +++ DG
Sbjct: 62 VLDAATLDVVAEATAVGEVSFPYVPGLLAFREIPTVLAALDALP-----CPPGLIVCDGY 116
Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGG 237
G+ HPR FGLASH+GVL L TIGV KN T S + PL+ G
Sbjct: 117 GVAHPRRFGLASHLGVLTGLPTIGVAKNP-----FTFS-----YEDPGAPRGSAAPLLAG 166
Query: 238 SGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVM-IVKMTCKYRVPEPIRQADIRSRDYL 296
+ G A+R T +KP+F+SVGH + LD A + +T KYR+PE R+AD R L
Sbjct: 167 ADEV-GRALR-TQSGVKPVFVSVGHRVDLDHACAHTLALTPKYRIPETTRRADSLCRRAL 224
Query: 297 QKHQS 301
++ +
Sbjct: 225 KEATA 229
>sp|B9K7P3|NFI_THENN Endonuclease V OS=Thermotoga neapolitana (strain ATCC 49049 / DSM
4359 / NS-E) GN=nfi PE=3 SV=1
Length = 225
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 28/226 (12%)
Query: 74 WNLPNSTTTNTSTKEEEEVLLK-------YIGGVDMSFSKEDPSIACGCIVVLDLQTLQI 126
W+L E++L K Y+ GVD+SF K + +A IVV++ T +I
Sbjct: 9 WDLSPEEAMKIQNVLREKILFKPFEGEPKYVAGVDLSFPKREEGLAV--IVVMEYPTFKI 66
Query: 127 VYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFG 186
V ++ PY+PG LAFRE P+ L + +K + P V++ DG G+ HPR G
Sbjct: 67 VELVSERGKVDFPYIPGLLAFREGPLFLKAWEKLKTK-----PDVVVFDGQGIAHPRKLG 121
Query: 187 LASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAM 246
+ASH+G+ + TIGV K+ + R+ + +NE+II G M
Sbjct: 122 IASHMGLFIEIPTIGVAKSRLY-GTYREPENRRCSWSYLYDNEEII----------GCVM 170
Query: 247 RSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQADI 290
R T + PIF+S GH I +++++ +VK R+PEP R A I
Sbjct: 171 R-TREGSAPIFVSPGHLIDVESSIRLVKSFTLPGRRLPEPTRMAHI 215
>sp|A1RY04|NFI_THEPD Endonuclease V OS=Thermofilum pendens (strain Hrk 5) GN=nfi PE=3
SV=1
Length = 232
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 29/208 (13%)
Query: 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQV--PYVPGFLAFREAP 151
++ GVD++F + A VV++ + +V DYS+ R +V PYVP LAFRE
Sbjct: 36 VRRAAGVDVAFKGD---YAFAAAVVVEYPSFSVV--DYSVTRTEVRFPYVPTLLAFREVW 90
Query: 152 VLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDG 211
+ L +K P VL+VDGNG LHP G A H+GVL + TIGV K L
Sbjct: 91 PAYTALKRLKSE-----PDVLLVDGNGRLHPFKAGFACHLGVLVDKPTIGVAKKL----- 140
Query: 212 LTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVM 271
L+ + + P++ G G+A++ T + KP+F+S+GH ISL+TAV
Sbjct: 141 --------LVGEVGSWKSGVAPVL-YRGEVLGMAVK-TSERSKPVFVSIGHKISLNTAVW 190
Query: 272 IVKMTCK--YRVPEPIRQADIRSRDYLQ 297
IV+M K R+PEP+R A + + Y +
Sbjct: 191 IVRMFTKRGLRLPEPLRLAHLYATAYAR 218
>sp|A8G8F8|NFI_SERP5 Endonuclease V OS=Serratia proteamaculans (strain 568) GN=nfi PE=3
SV=1
Length = 228
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 25/211 (11%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+I G D+ F +E ++ I +L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 31 FIAGADVGFEQEG-AVTRAAIAILRYPSLELVEYQVARVATTMPYIPGFLSFREYPALLA 89
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + H P +++VDG+G+ HPR G+ASH G+L N+ TIGV K
Sbjct: 90 AWEQL-----HQKPDLVLVDGHGISHPRRLGVASHFGLLVNVPTIGVAKK-------RLC 137
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIV-K 274
G LD D + + G G RS P+FIS GH + D+A+ V +
Sbjct: 138 GKFAPLD----EATDALAPLEDKGEQLGWVWRSK-ARCNPLFISTGHRVGADSALAWVQR 192
Query: 275 MTCKYRVPEPIRQAD-IRSR-----DYLQKH 299
YR+PEP R AD I SR +LQ+H
Sbjct: 193 CMAGYRLPEPTRWADAIASRRPAFQRWLQQH 223
>sp|Q97M37|NFI_CLOAB Endonuclease V OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=nfi PE=3 SV=1
Length = 234
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 20/209 (9%)
Query: 87 KEEEEVLLKYIGGVDMSF-SKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFL 145
KEE+ +K GVD+++ +K + CI+V+D T +I+ + Y ++VPY+PGFL
Sbjct: 35 KEED---IKLCAGVDLAYWTKGEKQYGVCCIIVIDYNTGEIIEKAYDYGEIEVPYMPGFL 91
Query: 146 AFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205
AFRE P+++ + +K P + M DGNG LH G+A+H N TIGV K+
Sbjct: 92 AFRELPLVIKTVKKLKNE-----PDIFMFDGNGYLHYNHMGIATHASFFLNKPTIGVAKS 146
Query: 206 LHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCIS 265
V G+ ++ ++ E +DI+ + +G +R+ D +KPIF+S G+ I
Sbjct: 147 YLKVAGVDF----EMPESFEGAFKDIVI----NEEVYGRVLRTKKD-VKPIFVSCGNYID 197
Query: 266 LDTAVMIVK--MTCKYRVPEPIRQADIRS 292
L+T I + R+P +R AD+ +
Sbjct: 198 LETCTKICSKLINNDSRLPITVRLADLET 226
>sp|P68738|NFI_SALTY Endonuclease V OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=nfi PE=3 SV=1
Length = 223
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L A+ + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSAEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|P68737|NFI_SALTI Endonuclease V OS=Salmonella typhi GN=nfi PE=3 SV=1
Length = 223
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L A+ + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSAEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|C0Q2T0|NFI_SALPC Endonuclease V OS=Salmonella paratyphi C (strain RKS4594) GN=nfi
PE=3 SV=1
Length = 223
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L A+ + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSAEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B5FQL3|NFI_SALDC Endonuclease V OS=Salmonella dublin (strain CT_02021853) GN=nfi
PE=3 SV=1
Length = 223
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L A+ + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSAEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|Q57H57|NFI_SALCH Endonuclease V OS=Salmonella choleraesuis (strain SC-B67) GN=nfi
PE=3 SV=1
Length = 223
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L A+ + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSAEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B5F1I1|NFI_SALA4 Endonuclease V OS=Salmonella agona (strain SL483) GN=nfi PE=3 SV=1
Length = 223
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L A+ + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSAEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|C6DHT0|NFI_PECCP Endonuclease V OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=nfi PE=3 SV=1
Length = 229
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 27/199 (13%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+I G D+ F +E S+ I V+ +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 31 FIAGADVGFEQEG-SVTRAAIAVMRYPSLELVEYKIARISTTMPYIPGFLSFRECPGLLA 89
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN--LHHVDGLT 213
++++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K+ + LT
Sbjct: 90 AWALLEQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKSRLCGRFEPLT 144
Query: 214 HS-GVRQ-LLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVM 271
S G +Q LLD E G W R P+F++ GH +S D+A+
Sbjct: 145 ESVGSQQPLLDKGEQ-----------IGWVWRSKARCN-----PLFVATGHRVSQDSALH 188
Query: 272 IVKMTCK-YRVPEPIRQAD 289
V+ + YR+PEP R AD
Sbjct: 189 WVQSCMRGYRLPEPTRWAD 207
>sp|B4EYT7|NFI_PROMH Endonuclease V OS=Proteus mirabilis (strain HI4320) GN=nfi PE=3
SV=1
Length = 222
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
YI G D+ F ++ IVV+ + +IV + + +PY+PG L+FRE P LL
Sbjct: 29 YIAGADVGFENSG-AVTRAAIVVMHYPSFEIVEYQIARIATLLPYIPGLLSFRECPALLK 87
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+K++ PQ++ VDG G+ HPR G+ASH G+LA++ TIGV K+
Sbjct: 88 AWQGIKQK-----PQLVFVDGQGIAHPRRLGVASHFGLLADIPTIGVAKS-------RLC 135
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + LD + E ++ G RS KP++IS G+ +S+++A+ VK
Sbjct: 136 GDDKKLDDDVGSTEKLM----DKDEQLGWIYRSK-KRCKPLYISPGYKVSMESALAWVKR 190
Query: 276 TCK-YRVPEPIRQAD 289
YR+PEP R AD
Sbjct: 191 CINGYRLPEPTRWAD 205
>sp|A6TGQ5|NFI_KLEP7 Endonuclease V OS=Klebsiella pneumoniae subsp. pneumoniae (strain
ATCC 700721 / MGH 78578) GN=nfi PE=3 SV=1
Length = 223
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 33/201 (16%)
Query: 97 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSL 156
IGG D+ F +E I +V+L L++V + + +PY+PGFL+FRE P LL+
Sbjct: 31 IGGADVGFEQEG-EITRAAMVLLTWPELELVEYQVARVATSMPYIPGFLSFRETPALLAA 89
Query: 157 LDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSG 216
+ + ++ P +L VDG+G+ HPR G+ASH G++ ++ TIGV K
Sbjct: 90 WEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLMIDVPTIGVAK------------ 132
Query: 217 VRQLLDAKENNNED----IIPLMGGS---GSTWGVAMRSTPDTLKPIFISVGHCISLDTA 269
+ L K + D + PLM + W +R P+FIS GH + +D+A
Sbjct: 133 --KRLCGKIGDLGDEPGALAPLMDKNEQLAWVWRSKVRCN-----PLFISTGHRVGMDSA 185
Query: 270 VMIVKMTCK-YRVPEPIRQAD 289
+M V+ + YR+PEP R AD
Sbjct: 186 LMWVERCMRGYRLPEPTRWAD 206
>sp|B5XYE0|NFI_KLEP3 Endonuclease V OS=Klebsiella pneumoniae (strain 342) GN=nfi PE=3
SV=1
Length = 223
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 29/199 (14%)
Query: 97 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSL 156
IGG D+ F +E + +V+L L++V + + +PY+PGFL+FRE P LL+
Sbjct: 31 IGGADVGFEQEG-EVTRAAMVLLTWPELELVEYQVARVATTMPYIPGFLSFRETPALLAA 89
Query: 157 LDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSG 216
+ + ++ P +L VDG+G+ HPR G+ASH G++ ++ TIGV K
Sbjct: 90 WEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLMIDVPTIGVAKK----------- 133
Query: 217 VRQLLDAKENNNED--IIPLMGGS---GSTWGVAMRSTPDTLKPIFISVGHCISLDTAVM 271
R E +E + PLM + W +R P+FIS GH + +D+A+M
Sbjct: 134 -RLCGKIGELGDEPGALAPLMDKNEQLAWVWRSKVRCN-----PLFISTGHRVGMDSALM 187
Query: 272 IVKMTCK-YRVPEPIRQAD 289
V+ + YR+PEP R AD
Sbjct: 188 WVERCMRGYRLPEPTRWAD 206
>sp|A1JIJ2|NFI_YERE8 Endonuclease V OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=nfi PE=3 SV=1
Length = 234
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 36/221 (16%)
Query: 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVL 153
+++I G D+ F ++ + I VL +L++V + + +PY+PG L+FRE P L
Sbjct: 29 VRFIAGADVGFEQQG-EVTRAAIAVLRYPSLELVEYQVARVATSLPYIPGLLSFREYPAL 87
Query: 154 LSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGK-----NLHH 208
L+ +++R PQ++ VDG G+ HPR G+ASH G+L ++ TIGV K N
Sbjct: 88 LAAWAQIQQR-----PQLVFVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGNFEP 142
Query: 209 VDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDT 268
+ G + ++ L+DA E G W R P+FIS GH +S+ +
Sbjct: 143 L-GDDNGALQPLVDADEQ-----------LGWVWRSKSRCN-----PLFISPGHRVSVGS 185
Query: 269 AVMIVK-MTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRW 308
A+ V+ YR+PEP R AD + + Q QRW
Sbjct: 186 ALEWVQHCIAGYRLPEPTRWADAIASNRPQ-------FQRW 219
>sp|B5BJR7|NFI_SALPK Endonuclease V OS=Salmonella paratyphi A (strain AKU_12601) GN=nfi
PE=3 SV=1
Length = 223
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTWAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|Q5PKA2|NFI_SALPA Endonuclease V OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=nfi PE=3 SV=1
Length = 223
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTWAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|A9MHD1|NFI_SALAR Endonuclease V OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=nfi PE=3 SV=1
Length = 223
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K S
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLS 143
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
L A + E + W R P+FI+ GH +S D+A+ V+
Sbjct: 144 AEPGALSALMDKGEQL-------AWVWRSKARCN-----PLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|A9N0L0|NFI_SALPB Endonuclease V OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=nfi PE=3 SV=1
Length = 223
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B4T100|NFI_SALNS Endonuclease V OS=Salmonella newport (strain SL254) GN=nfi PE=3
SV=1
Length = 223
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B4TCT7|NFI_SALHS Endonuclease V OS=Salmonella heidelberg (strain SL476) GN=nfi PE=3
SV=1
Length = 223
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B5RFI6|NFI_SALG2 Endonuclease V OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=nfi PE=3 SV=1
Length = 223
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B5QYF3|NFI_SALEP Endonuclease V OS=Salmonella enteritidis PT4 (strain P125109)
GN=nfi PE=3 SV=1
Length = 223
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|B4TQK8|NFI_SALSV Endonuclease V OS=Salmonella schwarzengrund (strain CVM19633)
GN=nfi PE=3 SV=1
Length = 223
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
+IGG D+ F ++ + +V+L +L++V + + +PY+PGFL+FRE P LL+
Sbjct: 30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLA 88
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
+ + ++ P +L VDG+G+ HPR G+ASH G+L ++ TIGV K
Sbjct: 89 AWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKK-------RLC 136
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKM 275
G + L + + PLM G RS P+FI+ GH +S D+A+ V+
Sbjct: 137 GKFEPLSTEPGA---LSPLM-DKGEQLAWVWRSK-ARCNPLFIATGHRVSTDSALAWVQR 191
Query: 276 TCK-YRVPEPIRQAD 289
K YR+PEP R AD
Sbjct: 192 CMKGYRLPEPTRWAD 206
>sp|Q66FP0|NFI_YERPS Endonuclease V OS=Yersinia pseudotuberculosis serotype I (strain
IP32953) GN=nfi PE=3 SV=1
Length = 234
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 34/221 (15%)
Query: 93 LLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPV 152
+++I G D+ F + I I +L +L +V + + +PY+PG L+FRE P
Sbjct: 28 FVRFIAGADVGFEQHG-EITRAAIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPA 86
Query: 153 LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212
LL+ +++R P +++VDG G+ HPR G+ASH G+L ++ TIGV K+ D L
Sbjct: 87 LLAAWAQLQQR-----PDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFL 141
Query: 213 TH----SGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDT 268
V+ L D N+E + G W +R P+FIS GH +S+ +
Sbjct: 142 PLHQDVGAVQPLFD----NDEQL-------GWVWRSKIRCN-----PLFISPGHRVSVGS 185
Query: 269 AVMIV-KMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRW 308
A+ V + YR+PEP R AD + + Q QRW
Sbjct: 186 ALAWVQRCMAGYRLPEPTRWADAIASNRPQ-------FQRW 219
>sp|A7FNH1|NFI_YERP3 Endonuclease V OS=Yersinia pseudotuberculosis serotype O:1b (strain
IP 31758) GN=nfi PE=3 SV=1
Length = 234
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 34/221 (15%)
Query: 93 LLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPV 152
+++I G D+ F + I I +L +L +V + + +PY+PG L+FRE P
Sbjct: 28 FVRFIAGADVGFEQHG-EITRAAIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPA 86
Query: 153 LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212
LL+ +++R P +++VDG G+ HPR G+ASH G+L ++ TIGV K+ D L
Sbjct: 87 LLAAWAQLQQR-----PDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFL 141
Query: 213 TH----SGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDT 268
V+ L D N+E + G W +R P+FIS GH +S+ +
Sbjct: 142 PLHQDVGAVQPLFD----NDEQL-------GWVWRSKIRCN-----PLFISPGHRVSVGS 185
Query: 269 AVMIV-KMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRW 308
A+ V + YR+PEP R AD + + Q QRW
Sbjct: 186 ALAWVQRCMAGYRLPEPTRWADAIASNRPQ-------FQRW 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,945,712
Number of Sequences: 539616
Number of extensions: 5180295
Number of successful extensions: 13462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12988
Number of HSP's gapped (non-prelim): 154
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)