Query 046070
Match_columns 309
No_of_seqs 158 out of 543
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11617 endonuclease V; Provi 100.0 8.5E-71 1.8E-75 504.1 22.2 213 52-299 4-217 (224)
2 cd06559 Endonuclease_V Endonuc 100.0 7.2E-68 1.6E-72 480.7 21.1 206 53-294 2-208 (208)
3 PF04493 Endonuclease_5: Endon 100.0 2.6E-65 5.7E-70 463.4 22.4 204 58-292 1-206 (206)
4 KOG4417 Predicted endonuclease 100.0 5.3E-65 1.1E-69 458.6 17.4 242 47-299 5-253 (261)
5 COG1515 Nfi Deoxyinosine 3'end 100.0 3.4E-64 7.4E-69 455.1 19.2 205 51-294 5-210 (212)
6 PRK00766 hypothetical protein; 99.8 1.6E-20 3.6E-25 169.4 11.7 181 94-300 8-191 (194)
7 PF01949 DUF99: Protein of unk 99.8 3.8E-18 8.3E-23 153.3 10.1 180 95-299 4-185 (187)
8 COG1628 Endonuclease V homolog 99.6 1.5E-14 3.3E-19 129.5 11.6 176 94-296 8-184 (185)
9 PF08459 UvrC_HhH_N: UvrC Heli 97.1 0.00069 1.5E-08 59.7 4.9 104 94-208 11-117 (155)
10 PRK14672 uvrC excinuclease ABC 96.4 0.008 1.7E-07 63.9 7.6 102 94-206 454-558 (691)
11 PRK12306 uvrC excinuclease ABC 96.4 0.0087 1.9E-07 61.9 7.1 101 94-205 366-469 (519)
12 TIGR00194 uvrC excinuclease AB 96.3 0.0084 1.8E-07 62.7 6.6 102 95-206 382-488 (574)
13 PRK14667 uvrC excinuclease ABC 96.3 0.0084 1.8E-07 62.6 6.4 101 94-205 361-464 (567)
14 PRK14670 uvrC excinuclease ABC 96.2 0.0095 2.1E-07 62.3 6.7 102 94-205 358-465 (574)
15 PRK14671 uvrC excinuclease ABC 96.1 0.017 3.8E-07 60.9 8.2 101 94-205 415-518 (621)
16 PRK14668 uvrC excinuclease ABC 96.1 0.017 3.6E-07 60.6 7.7 101 94-205 375-478 (577)
17 PRK14669 uvrC excinuclease ABC 96.0 0.028 6E-07 59.5 8.9 100 94-205 396-500 (624)
18 PRK00558 uvrC excinuclease ABC 96.0 0.011 2.4E-07 62.1 5.6 103 93-206 382-487 (598)
19 COG0322 UvrC Nuclease subunit 95.1 0.021 4.6E-07 59.8 4.2 99 94-206 379-480 (581)
20 PF09376 NurA: NurA domain; I 94.7 0.67 1.4E-05 40.9 12.0 54 239-293 188-246 (247)
21 PRK14666 uvrC excinuclease ABC 93.1 0.34 7.3E-06 52.0 8.1 97 94-206 472-573 (694)
22 PF02171 Piwi: Piwi domain; I 87.8 23 0.0005 33.2 14.6 47 251-297 242-299 (302)
23 cd04657 Piwi_ago-like Piwi_ago 76.6 41 0.00089 33.8 12.1 34 263-296 382-423 (426)
24 COG3367 Uncharacterized conser 70.6 18 0.00039 35.9 7.6 122 150-297 208-336 (339)
25 PRK00090 bioD dithiobiotin syn 64.4 18 0.00038 32.3 5.9 52 151-207 91-144 (222)
26 TIGR00347 bioD dethiobiotin sy 62.7 26 0.00055 29.7 6.3 51 152-207 88-140 (166)
27 cd04659 Piwi_piwi-like_ProArk 50.2 2.7E+02 0.0058 27.6 14.7 185 94-296 189-401 (404)
28 PHA02533 17 large terminase pr 47.3 62 0.0013 33.9 7.2 72 92-182 312-385 (534)
29 PRK12374 putative dithiobiotin 45.8 60 0.0013 29.5 6.2 53 151-208 93-147 (231)
30 CHL00067 rps2 ribosomal protei 43.2 53 0.0011 30.7 5.5 33 168-205 161-193 (230)
31 PF07755 DUF1611: Protein of u 41.0 33 0.00073 33.5 3.9 121 141-287 166-295 (301)
32 PTZ00340 O-sialoglycoprotein e 40.9 84 0.0018 31.3 6.7 89 96-202 2-107 (345)
33 COG1515 Nfi Deoxyinosine 3'end 40.2 5.9 0.00013 36.9 -1.3 45 250-294 145-194 (212)
34 PF13500 AAA_26: AAA domain; P 38.9 49 0.0011 29.0 4.4 67 136-207 69-140 (199)
35 KOG3801 Uncharacterized conser 37.6 48 0.001 27.3 3.6 61 9-69 10-73 (94)
36 PRK10481 hypothetical protein; 35.9 60 0.0013 30.4 4.6 53 135-201 159-211 (224)
37 COG0533 QRI7 Metal-dependent p 35.1 1E+02 0.0023 30.8 6.3 13 193-207 99-111 (342)
38 PF13528 Glyco_trans_1_3: Glyc 34.3 63 0.0014 29.8 4.5 30 168-205 94-123 (318)
39 PRK06278 cobyrinic acid a,c-di 32.5 56 0.0012 33.9 4.1 148 35-208 193-362 (476)
40 TIGR01012 Sa_S2_E_A ribosomal 32.0 52 0.0011 30.2 3.5 33 168-205 108-140 (196)
41 PF08203 RNA_polI_A14: Yeast R 30.5 80 0.0017 25.0 3.8 24 42-65 48-71 (76)
42 PRK00784 cobyric acid synthase 28.4 1.4E+02 0.0029 30.8 6.1 52 151-207 113-168 (488)
43 PRK05299 rpsB 30S ribosomal pr 28.4 1.2E+02 0.0025 28.9 5.3 55 146-205 130-189 (258)
44 TIGR01090 apt adenine phosphor 27.7 1.4E+02 0.003 25.9 5.3 33 168-205 46-78 (169)
45 PF08660 Alg14: Oligosaccharid 26.1 93 0.002 27.5 4.0 57 135-202 65-127 (170)
46 PF02601 Exonuc_VII_L: Exonucl 26.0 20 0.00043 34.3 -0.4 61 229-296 86-146 (319)
47 PF00731 AIRC: AIR carboxylase 25.1 83 0.0018 27.8 3.4 48 147-203 38-85 (150)
48 TIGR01011 rpsB_bact ribosomal 24.5 1.7E+02 0.0037 27.2 5.6 54 147-205 129-187 (225)
49 PF14639 YqgF: Holliday-juncti 24.1 4.5E+02 0.0098 22.9 7.8 16 280-295 124-139 (150)
50 TIGR00143 hypF [NiFe] hydrogen 24.1 1.6E+02 0.0034 32.2 5.9 61 136-203 384-444 (711)
51 TIGR00661 MJ1255 conserved hyp 24.0 1.2E+02 0.0026 28.7 4.5 29 168-204 93-121 (321)
52 COG1070 XylB Sugar (pentulose 23.6 2.4E+02 0.0053 28.9 6.9 90 94-191 3-115 (502)
53 PF00072 Response_reg: Respons 23.5 1.3E+02 0.0027 22.8 3.8 46 155-205 34-80 (112)
54 cd00529 RuvC_resolvase Hollida 22.2 4.3E+02 0.0094 22.6 7.3 71 96-180 1-71 (154)
55 KOG0780 Signal recognition par 22.0 85 0.0018 32.5 3.2 42 135-183 154-198 (483)
56 PHA03392 egt ecdysteroid UDP-g 21.8 57 0.0012 33.7 2.0 31 168-204 136-166 (507)
57 TIGR02195 heptsyl_trn_II lipop 21.1 1.1E+02 0.0023 29.0 3.6 41 141-202 236-276 (334)
58 PRK12311 rpsB 30S ribosomal pr 20.1 1.9E+02 0.0042 28.6 5.1 34 168-206 152-185 (326)
No 1
>PRK11617 endonuclease V; Provisional
Probab=100.00 E-value=8.5e-71 Score=504.12 Aligned_cols=213 Identities=35% Similarity=0.590 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEE
Q 046070 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDY 131 (309)
Q Consensus 52 ~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~ 131 (309)
.++|+++|++|+++++++|.++ ..++++|||+|+||.++ +..++|++||++|++++++++.+
T Consensus 4 ~~~~~~~Q~~l~~~v~~~~~~~-----------------~~~~~~VaGvDvsy~~~-~~~~~aa~Vvl~~~~~~~v~~~~ 65 (224)
T PRK11617 4 LAELRAQQIELASSVIREDRLD-----------------KDPPRLIAGADVGFEQG-GEVTRAAIVVLKYPSLELVEYQV 65 (224)
T ss_pred HHHHHHHHHHHHhhccccccCC-----------------CCCccEEEEEEEEEcCC-CceEEEEEEEEECCCCcEEEEEE
Confidence 4789999999999999887531 13689999999999764 45688999999999999999999
Q ss_pred EEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCC
Q 046070 132 SLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDG 211 (309)
Q Consensus 132 ~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG 211 (309)
...+++||||||||||||+|+|++++++|+.+ ||+|||||||++|||+||||||+|+.+|+||||||||+|+++
T Consensus 66 ~~~~~~~PYIPG~LaFRE~P~~l~al~~l~~~-----PdlllvDG~G~~HPR~~GlA~HlGv~~~~PtIGVAK~~L~g~- 139 (224)
T PRK11617 66 ARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLVFVDGHGIAHPRRLGVASHFGLLVDVPTIGVAKKRLCGK- 139 (224)
T ss_pred EEeccCCCcCcchHHHhhHHHHHHHHHhcCcC-----CCEEEEcCceeECCCCcceeeEEEeecCCCEEEEEcccccCC-
Confidence 99999999999999999999999999999864 999999999999999999999999999999999999999943
Q ss_pred ccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHH
Q 046070 212 LTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADI 290 (309)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~ 290 (309)
+.++++++|++.+|+ .+|+++|+++||+. ++||||||+||+|||++|+++|++|+ +||+|||||+||+
T Consensus 140 ---------~~~~~~~~G~~~~l~-~~g~vvG~~lrt~~-~~kPiyVS~Gh~i~l~~A~~~v~~~~~~yRlPePlR~Ad~ 208 (224)
T PRK11617 140 ---------FEPLSEEPGSLQPLM-DKGEQLGWVWRSKA-RCNPLFISTGHRVSLDSALAWVQRCMKGYRLPEPTRWADA 208 (224)
T ss_pred ---------CcCccccCCceeeEe-ECCEEEEEEEEcCC-CCCCEEEcCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence 234577889999998 46999999999975 68999999999999999999999998 8999999999999
Q ss_pred HHHHHHHhh
Q 046070 291 RSRDYLQKH 299 (309)
Q Consensus 291 ~sr~~~r~~ 299 (309)
+|++..+..
T Consensus 209 ls~~~~~~~ 217 (224)
T PRK11617 209 LASRRPAFV 217 (224)
T ss_pred HHhhhhhhh
Confidence 999887755
No 2
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=100.00 E-value=7.2e-68 Score=480.65 Aligned_cols=206 Identities=43% Similarity=0.743 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEE
Q 046070 53 NQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYS 132 (309)
Q Consensus 53 ~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~ 132 (309)
++|+++|++|+++++.++.+. .++++|+|+|+||.+ +++.++|++||++|+++++++..+.
T Consensus 2 ~~~~~~Q~~l~~~v~~~~~~~------------------~~~~~I~gvDiS~~~-~~~~~vaa~Vv~~~~~~~~~~~~~~ 62 (208)
T cd06559 2 EEARKLQEELAKKVVLEDLGP------------------GEVRLVAGVDVSYKK-DGDLAVAAAVVLDYPDLEVVETAVA 62 (208)
T ss_pred HHHHHHHHHHHhhcccCCCCC------------------CCccEEEEEEeeecc-CCCeEEEEEEEEECCCCcEEEEEEE
Confidence 689999999999999987521 468999999999987 3457999999999999999999999
Q ss_pred EEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCc
Q 046070 133 LLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212 (309)
Q Consensus 133 ~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~ 212 (309)
..++++|||||||||||+|++++++++|+. .||+|||||||++|||+||||||+|+.+|+||||||||+|++++.
T Consensus 63 ~~~~~~PYIPG~LafRE~p~l~~~~~~l~~-----~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~~l~g~~~ 137 (208)
T cd06559 63 VGEVTFPYIPGLLAFREGPPLLEALEKLKT-----KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSLLVGDGE 137 (208)
T ss_pred EEecCCCCcchhHHHhhHHHHHHHHHhCCC-----CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEccccccCCc
Confidence 999999999999999999999999999985 399999999999999999999999999999999999999996553
Q ss_pred cccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHH
Q 046070 213 THSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIR 291 (309)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~ 291 (309)
++...+|++.++. .+|+++|+++||++ ++|||||||||+||+++|+++|++|+ +||+|||||+||++
T Consensus 138 ----------~~~~~~g~~~~~~-~~~~~vG~~~r~~~-~~~PiyVS~Gh~i~l~~A~~~v~~~~~~~r~Pep~R~Ad~~ 205 (208)
T cd06559 138 ----------EPGEERGSFTPLY-DDGEVVGAALRTRD-GVKPVYVSPGHRIDLETAVELVLKCCKGYRLPEPTRLADLL 205 (208)
T ss_pred ----------CcccccCceeeec-cCCEEEEEEEecCC-CCCCEEEcCCCCcCHHHHHHHHHHHccCCCCCcHHHHHHHH
Confidence 2334457777765 67999999999875 58999999999999999999999999 59999999999999
Q ss_pred HHH
Q 046070 292 SRD 294 (309)
Q Consensus 292 sr~ 294 (309)
||+
T Consensus 206 sr~ 208 (208)
T cd06559 206 SRE 208 (208)
T ss_pred hcC
Confidence 973
No 3
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=100.00 E-value=2.6e-65 Score=463.35 Aligned_cols=204 Identities=44% Similarity=0.755 Sum_probs=158.9
Q ss_pred HHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeec
Q 046070 58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQ 137 (309)
Q Consensus 58 ~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~ 137 (309)
.|++|+++++.++.++ ...++++|||+||||.+ +++.++||+|++++++++++++.+...+++
T Consensus 1 ~q~elq~~l~~~~~~~----------------~~~~~~~V~gvDvsy~~-~~~~~~a~~Vv~~~~~~~~v~~~~~~~~~~ 63 (206)
T PF04493_consen 1 QQIELQEKLALKDRFS----------------PLSDVRLVAGVDVSYSD-RGDRAVAAAVVLDYPSLKVVEESYVIVPVS 63 (206)
T ss_dssp -HHHHGGG---S---S----------------GCTC-SEEEEEEEEEEC-CCCEEEEEEEEEETTTTEEEEEEEEEEE--
T ss_pred CHHHHHHHHhhccCcC----------------CCCccCEEEEEEEEEEc-CCCeEEEEEEEEECCCCCeEEEEEEEeccC
Confidence 4889999998887642 11368999999999973 356899999999999999999999999999
Q ss_pred cCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCcccccc
Q 046070 138 VPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGV 217 (309)
Q Consensus 138 ~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~ 217 (309)
||||||||||||+|+|+++|++|+.+ ||+|||||||++|||+||||||+|+.+|+||||||||+|++++.
T Consensus 64 ~PYiPG~LafRE~P~~l~~l~~l~~~-----~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~~l~g~~~----- 133 (206)
T PF04493_consen 64 FPYIPGFLAFRELPCILEALEKLKNK-----PDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKSLLYGDGE----- 133 (206)
T ss_dssp S-SSTT-GGGGTHHHHHHHHHTSSS-------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS-TTSTT------
T ss_pred cCccCCceehhhHHHHHHHHHHhccc-----CCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCcccccCCc-----
Confidence 99999999999999999999999875 89999999999999999999999999999999999999996543
Q ss_pred ccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-C-CCCChHHHHHHHHH
Q 046070 218 RQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-K-YRVPEPIRQADIRS 292 (309)
Q Consensus 218 ~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~-~RlPEPlR~Ad~~s 292 (309)
.+..+..++|+..+|. .+|+++|+++||+ ++.+|+|||+||+||+++|++++++|+ + ||+|||||+||++|
T Consensus 134 --~~~~~~~~~g~~~~l~-~~~~~~g~~lrt~-~~~~pi~vS~Gh~i~l~ta~~iv~~~~~~~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 134 --EFEEPGRKRGSSSPLY-ISGEVVGAALRTR-ESAKPIYVSPGHRISLETALEIVLKLCKGGYRLPEPTRLADLLT 206 (206)
T ss_dssp --EE----SSTTEEEEEE-ETTEEEEEEEESS-TTS--EEEEEEESS-HHHHHHHHHHTSSTTSSS-HHHHHHHHHH
T ss_pred --ccchhccccCccceEe-eCCEEEEEEEecC-CCCccEEEeCCCCcCHHHHHHHHHHHcCCCCcCCCcchhhhhcC
Confidence 2344555668888886 4699999999975 579999999999999999999999998 5 79999999999986
No 4
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=100.00 E-value=5.3e-65 Score=458.64 Aligned_cols=242 Identities=41% Similarity=0.651 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceE
Q 046070 47 AAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQI 126 (309)
Q Consensus 47 ~~~~~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~v 126 (309)
+...++..|+++|.+|+++++..++|. +. ...++.++++|||+|+||.+.+++.|++++|++++|++++
T Consensus 5 ~l~d~l~~W~~~q~elk~~Li~~~~fs--~q---------s~~~L~eikyV~GiD~Sf~K~~S~~a~~~lv~~~lp~l~~ 73 (261)
T KOG4417|consen 5 NLHDKLTIWAKAQCELKERLIRDSTFS--VQ---------SVEDLDEIKYVAGIDTSFAKLNSDMAYISLVFWTLPDLKH 73 (261)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhccccc--cc---------cccchhheeeeeeeccchhhcCCCceEEEEEEEeccccee
Confidence 445789999999999999999988763 21 1112357999999999999988889999999999999999
Q ss_pred EEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCc
Q 046070 127 VYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNL 206 (309)
Q Consensus 127 v~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~ 206 (309)
|+..+....+..|||||||||||+|.|+..++++..+++++.||||||||||++|||+||+|||+||+.++||||||||+
T Consensus 74 v~~d~~~~~Le~pYvPgfLafREa~v~l~~L~~v~~erh~fr~dvilvDGnG~lHprGfGlACHlGvL~~lp~iGVaKNl 153 (261)
T KOG4417|consen 74 VATDSDTRMLELPYVPGFLAFREAEVMLDFLKSVITERHEFRPDVILVDGNGELHPRGFGLACHLGVLSGLPSIGVAKNL 153 (261)
T ss_pred eeehhhhhhhccCcCccceeeehhHHHHHHHHhcccccCCccccEEEEcCCceEcccccchhhhhhHhcCCCccchhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccc------ccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHc-CCC
Q 046070 207 HHVDGLTHS------GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMT-CKY 279 (309)
Q Consensus 207 L~~dG~~~~------~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~-~~~ 279 (309)
++++|+..+ .+++++.+.-++..-.+-+++.++..+|+.+++..++.||||||+||+|+||.|+++|.+. +++
T Consensus 154 hH~~gl~~s~~~~~es~k~h~~~~~~~h~~~i~~i~~s~v~~gv~i~~~~sS~~pvyVS~G~~i~Le~s~eiv~~~~~~~ 233 (261)
T KOG4417|consen 154 HHTYGLIGSENKKVESFKEHCREVYKNHKTSIGFIPFSIVEPGVLILRMGSSMNPVYVSAGYGIDLELSTEIVSQLLLNN 233 (261)
T ss_pred hhhhhcccchhhhHHHHHHHHHHHhccCCccceecCCcccceeeEEEeccCCCCcEEEEecccccHHHHHHHHHHHhhcC
Confidence 999998754 2444443333333334445678899999999999999999999999999999999999975 599
Q ss_pred CCChHHHHHHHHHHHHHHhh
Q 046070 280 RVPEPIRQADIRSRDYLQKH 299 (309)
Q Consensus 280 RlPEPlR~Ad~~sr~~~r~~ 299 (309)
|+|||+|+||+.||.++|.+
T Consensus 234 rvpEPIRqADi~sr~~l~~q 253 (261)
T KOG4417|consen 234 RVPEPIRQADIESRRLLREQ 253 (261)
T ss_pred CCCCchhhhhHHHHHHHHHh
Confidence 99999999999999999843
No 5
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-64 Score=455.13 Aligned_cols=205 Identities=39% Similarity=0.657 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEE
Q 046070 51 QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYED 130 (309)
Q Consensus 51 ~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~ 130 (309)
.+++++++|++|++++++++.+ ++++|||+|+||.+ +..++||+|+++++++++++..
T Consensus 5 ~~e~~~~iQ~~l~~~i~l~~~~--------------------~v~~vagvDvsy~~--~~~~~aa~Vv~~~~~~~vie~~ 62 (212)
T COG1515 5 TLEEAQEIQEELARSVVLEPDF--------------------EVRTVAGVDVSYED--GERGRAAAVVLDYPDLEVIETA 62 (212)
T ss_pred CHHHHHHHHHHHhhheeccCCC--------------------CcceEEEEEEEecC--CCeEEEEEEEEEcCCCceEEEE
Confidence 4788999999999999999863 58999999999983 4579999999999999999999
Q ss_pred EEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccC
Q 046070 131 YSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVD 210 (309)
Q Consensus 131 ~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~d 210 (309)
+...+++||||||||||||+|++++++++|..+ ||+||||||||+|||++|||||+||.+++|||||||++|+++
T Consensus 63 v~~~~~~~PYIPGfLaFRE~p~~l~a~~~l~~~-----~d~ilVDG~GiaHPR~~GlAsH~Gv~l~~PtIGVAK~~L~gt 137 (212)
T COG1515 63 VVRGPVSFPYIPGFLAFRELPLLLKALEKLSVK-----PDLLLVDGHGIAHPRRLGLASHIGVLLDVPTIGVAKSRLCGT 137 (212)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHHhcCCC-----CCEEEEcCcceecCcccChhheeeeeeCCCceeEehhhhcCc
Confidence 999999999999999999999999999999885 999999999999999999999999999999999999999954
Q ss_pred CccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHH
Q 046070 211 GLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQAD 289 (309)
Q Consensus 211 G~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad 289 (309)
+. ++....|.+.++. .+||++|++++|+ .+.+|+|||+||+|++++|++++++|+ .||+|||||+||
T Consensus 138 ~~----------~~~~~~g~~~~l~-~~gev~g~~l~t~-~~~~pi~vS~g~~i~l~sal~l~~~l~~~~rlpeptr~ad 205 (212)
T COG1515 138 PV----------EPESRRGAGKPLY-DKGEVLGGVLRTK-ERAKPIFVSPGHRISLPSALKLAQRLSKGYRLPEPTRLAD 205 (212)
T ss_pred cc----------CcccccCcceeEe-cCCeEEEEEEEec-ccCCCeEEccCCccCHHHHHHHHHHHcccccCCCcccHHH
Confidence 42 3556778899886 4599999999987 468999999999999999999999998 689999999999
Q ss_pred HHHHH
Q 046070 290 IRSRD 294 (309)
Q Consensus 290 ~~sr~ 294 (309)
.+|++
T Consensus 206 ~~a~~ 210 (212)
T COG1515 206 ILAKK 210 (212)
T ss_pred Hhhhh
Confidence 99975
No 6
>PRK00766 hypothetical protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=169.39 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=136.0
Q ss_pred ccEEEEEeeeeec--CCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcE
Q 046070 94 LKYIGGVDMSFSK--EDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171 (309)
Q Consensus 94 ~~~VaGvDvSf~~--~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdv 171 (309)
.-.|.|+|-||.. .+....+++ |||+.+ .+++ .+.+..++. -|..| +..+++++++.+.. | +.++
T Consensus 8 ~irvlGidds~f~~~~~~~~~lvG-vv~r~~--~~id-Gv~~~~itv---dG~Da---T~~i~~mv~~~~~r-~--~i~~ 74 (194)
T PRK00766 8 EIRVLGIDDGTFLFKSSEKVILVG-VVMRGG--DWVD-GVLSRWITV---DGLDA---TEAIIEMVNSSRHK-G--QLRV 74 (194)
T ss_pred cceEEEEecCccccCCCCCEEEEE-EEEECC--eEEe-eEEEEEEEE---CCccH---HHHHHHHHHhcccc-c--ceEE
Confidence 3478999999754 234566666 778765 5676 778888888 89999 99999999874321 1 2469
Q ss_pred EEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCC
Q 046070 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPD 251 (309)
Q Consensus 172 ilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~ 251 (309)
||+||..++..+-..+..-. ..+++|+|.|..++-..++++ +.++++|+..+.+.. ++-.-|+..- +.+
T Consensus 75 V~L~Git~agFNvvD~~~l~-~~tg~PVI~V~r~~p~~~~ie-~AL~k~f~~~~~R~~----~~~~~g~~~~--~~~--- 143 (194)
T PRK00766 75 IMLDGITYGGFNVVDIEELY-RETGLPVIVVMRKKPDFEAIE-SALKKHFSDWEERIK----LIKKAGKIVE--LIT--- 143 (194)
T ss_pred EEECCEeeeeeEEecHHHHH-HHHCCCEEEEEecCCCHHHHH-HHHHHHCCCHHHHHH----HHHhCCCceE--ecc---
Confidence 99999999988888876654 899999999998887777764 567777866543211 2111122211 111
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHhhc
Q 046070 252 TLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYLQKHQ 300 (309)
Q Consensus 252 ~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~r~~~ 300 (309)
.+|+|||+ |+||+++|.+++++|+ +||+|||||+||++|+.+.+...
T Consensus 144 -~~~vyvs~-~gi~l~~A~~lv~~~~~~~riPEPlR~Ahlia~~~~~ges 191 (194)
T PRK00766 144 -RGPLYIQA-AGIDPETAAEIVRLTSTRSLIPEPLRLAHLIASGVMLGES 191 (194)
T ss_pred -CCCEEEEE-cCCCHHHHHHHHHHhccCCCCchhhHHHHHHHHHhhcccc
Confidence 18999999 9999999999999998 89999999999999999887553
No 7
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=99.75 E-value=3.8e-18 Score=153.30 Aligned_cols=180 Identities=19% Similarity=0.237 Sum_probs=117.9
Q ss_pred cEEEEEeeeeecC-CCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070 95 KYIGGVDMSFSKE-DPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM 173 (309)
Q Consensus 95 ~~VaGvDvSf~~~-~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil 173 (309)
-+|.|+|-||... ++...+++ |||+.. .+++ .+....++. -|..| +..++++++.+... +.++||
T Consensus 4 iRvlGidDs~f~~~~~~s~lvG-vv~r~~--~~id-Gv~~~~itv---dG~Da---T~~i~~m~~~~~r~----~i~~v~ 69 (187)
T PF01949_consen 4 IRVLGIDDSPFPRSDGKSVLVG-VVMRGD--RRID-GVAFGRITV---DGMDA---TEAIIEMVKRLFRP----DIRVVM 69 (187)
T ss_dssp SEEEEEEEEE-SS----EEEEE-EEEETT---EEE-EEEEEEE-T---T-S-H---HHHHHHHHCCTTTT----TEEEEE
T ss_pred cEEEEEecCCCccCCCceEEEE-EEEeCC--eEEE-EEEEEEEEE---CCchH---HHHHHHHHHhcccC----cceEEE
Confidence 3689999999865 33455544 788765 5676 678889998 89999 99999999874433 368999
Q ss_pred EecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCC
Q 046070 174 VDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTL 253 (309)
Q Consensus 174 VDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~ 253 (309)
+||..++..+-..+-.-. ..+++|+|.|..+....++++ +.++++|+..+.+.. ++..-|+..-..+++ .
T Consensus 70 LdGit~agFNiiD~~~l~-~~tg~PVI~V~~~~p~~~~i~-~AL~~hF~d~~~R~~----~i~~~g~~~~v~~~~----~ 139 (187)
T PF01949_consen 70 LDGITFAGFNIIDIERLY-EETGLPVIVVMRKEPNLEGIE-SALRKHFPDWEERLE----IIEKLGPREPVSTPT----G 139 (187)
T ss_dssp ESSSEETTTEE--HHHHH-HHH---EEEEESS---HHHHH-HCCTT-STTHHHHHH----HHHHC---EEE---------
T ss_pred ECCEeEEeeEEecHHHHH-HHHCCCEEEEEEeCCCHHHHH-HHHHHhCCCHHHHHH----HHHhCCCcEEeeecc----c
Confidence 999999988877776544 899999999998877666664 577888876543211 111114444333331 4
Q ss_pred ccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHhh
Q 046070 254 KPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYLQKH 299 (309)
Q Consensus 254 kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~r~~ 299 (309)
.+|||.. .+|++++|.+++++++ .+++|||+|+||++|+.+.+..
T Consensus 140 ~~vyv~~-~Gi~~~~A~~li~~~t~~g~iPEPLRvAhliA~~~~~ge 185 (187)
T PF01949_consen 140 GPVYVQS-WGIDLEEARELIRRTTLHGKIPEPLRVAHLIASAISRGE 185 (187)
T ss_dssp TTEEEEE-ESS-HHHHHHHHHHC-SSSSS-HHHHHHHHHHHHHHT--
T ss_pred ccEEEEE-ecCCHHHHHHHHHHHhccCCCcccHHHHHHHHHHhhcCC
Confidence 7999999 9999999999999998 7999999999999999998754
No 8
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=99.58 E-value=1.5e-14 Score=129.48 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=130.7
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM 173 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil 173 (309)
--++.|+|-|+....+..++.+.+++..+ .+++ .+....++. -|..+ +..+.+++++++.. +.++||
T Consensus 8 ~irvlG~DD~~f~~~~~~~~~vG~v~r~~--~~v~-gv~~~~i~v---DG~D~---T~~i~~~v~~~~~~----~~rvVl 74 (185)
T COG1628 8 EIRVLGIDDGPFSRGDDKVTLVGVVMRGD--RVVD-GVAFSLITV---DGLDV---TDAISDMVNRSKRR----DLRVVL 74 (185)
T ss_pred ceEEEEEecCccCCCCceEEEEEEEEECC--eEEE-eeEEEEEEe---cCchH---HHHHHHHHHHhhcc----cccEEE
Confidence 35789999998765433455566788766 5665 666777877 79999 99999999999875 379999
Q ss_pred EecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCC
Q 046070 174 VDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTL 253 (309)
Q Consensus 174 VDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~ 253 (309)
.||.-.+..+-+.+-.-. ..+++|+|-|..+.-.++.+. +.++++|...+.+. .++-.=|+. .. -.+
T Consensus 75 LdGIt~aGFNivDi~~l~-~~tg~PVi~V~~k~P~~e~i~-~Al~k~f~d~e~R~----rii~~~g~~----~~---~~~ 141 (185)
T COG1628 75 LDGITFAGFNIVDIEALY-KETGLPVIVVYRKKPDIERIE-SALRKHFDDAEERI----RIIESAGEI----EK---VIT 141 (185)
T ss_pred ECCeeeccceEecHHHHH-HhhCCcEEEEEecCCCHHHHH-HHHHHhCCCHHHHH----HHHHhCCCc----ee---ecC
Confidence 999999988888776655 789999999998876654432 45666665543221 111010222 12 123
Q ss_pred ccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHH
Q 046070 254 KPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYL 296 (309)
Q Consensus 254 kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~ 296 (309)
+|+|+-. .+|++++|.++++.++ .+++|||+|+||++|+.+.
T Consensus 142 ~~iy~q~-~Gi~~~~A~~ii~~~t~~gkiPEpLRvAhlIAs~~~ 184 (185)
T COG1628 142 GPIYIQA-AGIEPSEAERIIRKTTIRGKIPEPLRVAHLIASAVG 184 (185)
T ss_pred CCEEEEE-ecCCHHHHHHHHHHhcccCCCCchhHHHHHHHHhhc
Confidence 4999999 9999999999999998 8999999999999998753
No 9
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=97.11 E-value=0.00069 Score=59.75 Aligned_cols=104 Identities=21% Similarity=0.341 Sum_probs=52.2
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
+++|-++|+|...+. .++|++||+.-.. .+--|..|.+....- .--|-+++|+ +.+-++++.... +..||+|
T Consensus 11 P~rIE~fDiSh~~G~--~~Vgs~Vvf~~G~~~k~~YR~f~i~~~~~--~dDy~~M~Ev--l~RR~~~~~~~~-~~lPDLi 83 (155)
T PF08459_consen 11 PRRIECFDISHIQGS--DTVGSMVVFENGKPDKSEYRRFNIKTVDG--GDDYAAMREV--LTRRFKRLKEEK-EPLPDLI 83 (155)
T ss_dssp -SEEEEEEEEECTTT--CEEEEEEEEETTEE-GGG-EEEEEE--ST--T-HHHHHHHH--HHHHHCCCHHHT-----SEE
T ss_pred CCEEEEEECcccCCc--ccEEEEEEEECCccChhhCceEecCCCCC--CcHHHHHHHH--HHHHHhcccccC-CCCCCEE
Confidence 589999999998653 5788999996531 122234444443322 2455565553 334444443321 1259999
Q ss_pred EEecccccCCCCCCchhhH--hhhcCCeeEEEeCCccc
Q 046070 173 MVDGNGLLHPRGFGLASHI--GVLANLTTIGVGKNLHH 208 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHl--Gv~l~iPtIGVAKs~L~ 208 (309)
||||= ..| ...|--. -.-+++|+||+||+.-.
T Consensus 84 lIDGG-~gQ---l~aa~~~l~~lgl~i~viglaK~~~~ 117 (155)
T PF08459_consen 84 LIDGG-KGQ---LNAAKEVLKELGLNIPVIGLAKNDEH 117 (155)
T ss_dssp EESSS-HHH---HHHHHHHHHCTT----EEEEESSSSE
T ss_pred EEcCC-HHH---HHHHHHHHHHcCCCeEEEEEEecccc
Confidence 99982 221 1111111 11235899999999654
No 10
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=96.44 E-value=0.008 Score=63.91 Aligned_cols=102 Identities=20% Similarity=0.320 Sum_probs=59.2
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCc-eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTL-QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l-~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
.++|-++|+|-..+. ..||++||+.-... +--|..|.+..+.. -+--|-++||+ +.+-+.++... .-.||+|
T Consensus 454 p~rIE~fDiSh~~G~--~~VasmVvf~~G~p~k~~YR~f~ik~~~~-~~DD~asM~Ev--l~RR~~r~~~~--~~~PDLi 526 (691)
T PRK14672 454 PTLIEGFDISHLGGK--YTVASLICFKNGAPDTKNYRLFNLRAHDT-RIDDFASMREA--IARRYTHTPEG--YTLPDLI 526 (691)
T ss_pred CCeEEEEECCccCCc--CceEEEEEEECCccChhhCCeeeccCCCC-CCchHHHHHHH--HHHHhhccccc--CCCCCEE
Confidence 578999999998653 47889999964311 22233333332221 13467777774 33444443211 0249999
Q ss_pred EEecccccCCCCCCchhhHhhhc--CCeeEEEeCCc
Q 046070 173 MVDGNGLLHPRGFGLASHIGVLA--NLTTIGVGKNL 206 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHlGv~l--~iPtIGVAKs~ 206 (309)
|||| |..| +..|.++=..+ ++|.||+||..
T Consensus 527 lIDG-GkgQ---l~aa~~vl~elgl~i~vigLaKr~ 558 (691)
T PRK14672 527 LVDG-GIGH---VSAAQHVLDALGLSIPLVGLAKRA 558 (691)
T ss_pred EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEecc
Confidence 9999 3332 23344432223 68999999953
No 11
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=96.35 E-value=0.0087 Score=61.91 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=56.9
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
.++|=|+|+|...+. .+||++||+.-.. .+--|..|.+..+.- .--|-+++|+ +.+-+.++..+.+ ..||+|
T Consensus 366 p~rIE~fDiSh~~G~--~~V~smVvf~~G~p~k~~YR~f~Ik~~~~--~dDy~~m~Ev--l~RR~~r~~~~~~-~~PDLi 438 (519)
T PRK12306 366 PNVIECFDISHLSGT--STVGSMVQFRNGKPDKKNYRRFKIKTVEG--IDDFASIAEV--VRRRYSRLLEENS-ELPDLI 438 (519)
T ss_pred CCeEEEEECCccCCC--CceEEEEEEeCCccChhhcCeeecCCCCC--CCHHHHHHHH--HHHHHhhcccccC-CCCCEE
Confidence 578999999997653 5788999996431 122333343332221 2456777664 3344444432100 259999
Q ss_pred EEecccccCCCCCCchhhHhhh--cCCeeEEEeCC
Q 046070 173 MVDGNGLLHPRGFGLASHIGVL--ANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHlGv~--l~iPtIGVAKs 205 (309)
|||| |..| ++.|.-.=.. +++|+||+||.
T Consensus 439 lIDG-GkgQ---l~aa~~~l~elg~~i~viglaK~ 469 (519)
T PRK12306 439 VIDG-GKGQ---LSSAFKELRKLGLKIPLISIAKR 469 (519)
T ss_pred EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEcC
Confidence 9998 2221 1112111011 26899999994
No 12
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=96.29 E-value=0.0084 Score=62.70 Aligned_cols=102 Identities=25% Similarity=0.398 Sum_probs=58.1
Q ss_pred cEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070 95 KYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM 173 (309)
Q Consensus 95 ~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil 173 (309)
++|-++|+|-..+. .+||++||+.-.. .+--|..|.+..+.- .--|-++||+ +.+-+.++..+.+.-.||+||
T Consensus 382 ~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~i~~~~~--~dDya~m~Ev--l~RR~~r~~~~~~~~~PDLil 455 (574)
T TIGR00194 382 KRIEIFDISHIDGS--QTVGSMVVFEDGKPLKASYRRYNINSITG--GDDYAAMREV--LRRRYSSIQKKNNLPLPDLIL 455 (574)
T ss_pred CEEEEEECCccCCC--cceEEEEEEeCCccChhhCCeeecCCCCC--CCHHHHHHHH--HHHHHhhhccccCCCCCCEEE
Confidence 89999999998653 5889999996532 122333343333222 1356677764 334444443211102599999
Q ss_pred EecccccCCCCCCchh----hHhhhcCCeeEEEeCCc
Q 046070 174 VDGNGLLHPRGFGLAS----HIGVLANLTTIGVGKNL 206 (309)
Q Consensus 174 VDG~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs~ 206 (309)
||| |..| .+.|. -+|+..++|.||+||..
T Consensus 456 iDG-GkgQ---l~aa~~~l~~lg~~~~i~viglaK~~ 488 (574)
T TIGR00194 456 IDG-GKGQ---LNAALEVLKSLGVVNKPIVIGLAKAK 488 (574)
T ss_pred EeC-CHHH---HHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 998 2221 11221 12221257999999964
No 13
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=96.26 E-value=0.0084 Score=62.61 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=57.9
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
.++|-++|+|...+. .+||++||+.-.. .+--|..|.+..+. -.--|-++||+ +.+-+.++..+.+ ..||+|
T Consensus 361 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~i~~~~--~~dD~~~m~Ev--l~RR~~r~~~~~~-~~PDLi 433 (567)
T PRK14667 361 PERIEGFDISHFYGE--FTVGSCVVWEDGSMNKKEYRRYKIKTVD--GIDDYASLREV--LTRRARRYKEGEN-PMPDLW 433 (567)
T ss_pred CCeEEEEECcccCCC--cceEEEEEEECCccChhhCCeeecCCCC--CCCHHHHHHHH--HHHHhhhccccCC-CCCCEE
Confidence 578999999997653 5788999996431 12223333333221 12457777774 3344544432111 249999
Q ss_pred EEecccccCCCCCCchhhHhhh--cCCeeEEEeCC
Q 046070 173 MVDGNGLLHPRGFGLASHIGVL--ANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHlGv~--l~iPtIGVAKs 205 (309)
|||| |..| .+.|.-.=.. +++|.||.||+
T Consensus 434 liDG-GkgQ---l~aa~~~l~~lg~~i~v~glaK~ 464 (567)
T PRK14667 434 LIDG-GKGQ---LSVGIEVRDRLGLNIKVFSLAKK 464 (567)
T ss_pred EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEec
Confidence 9999 3221 1222211111 36899999995
No 14
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=96.23 E-value=0.0095 Score=62.33 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=57.6
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCC-CCccccccchHHHHHHHHHHHhhcCCCCCcE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPY-VPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PY-IPG~LAFRE~P~il~al~kL~~~~p~~~Pdv 171 (309)
.++|-++|+|...+. .+||++||+.-.. -+--|..|.+..+. +. +--|-++||+ +.+-+.++..+. .-.||+
T Consensus 358 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YRkf~ik~~~-~~~~DD~a~M~Ev--l~RR~~r~~~~~-~~~PDL 431 (574)
T PRK14670 358 PKTIEGFDIAHLNGQ--KTVASLVTFKMGKPFKDGYRVYKINSLL-KGEIDDFKAIKEV--ISRRYSKLINEQ-LELPNL 431 (574)
T ss_pred CCeEEEEECCccCCC--CceEEEEEEECCccChhhCCeeeccCCC-CCCCCHHHHHHHH--HHHHHhhccccc-CCCCCE
Confidence 479999999998653 4788999996431 12223333333221 21 2357777774 334454443210 025999
Q ss_pred EEEecccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070 172 LMVDGNGLLHPRGFGLAS----HIGVLANLTTIGVGKN 205 (309)
Q Consensus 172 ilVDG~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs 205 (309)
||||| |..| ++.|. -+|+.-++|.||+||+
T Consensus 432 ilIDG-GkgQ---l~aa~~vl~~lg~~~~i~v~gLaK~ 465 (574)
T PRK14670 432 ILIDG-GKGQ---LNAAYSILKGLKIENKVKVCALAKK 465 (574)
T ss_pred EEEeC-CHHH---HHHHHHHHHHcCCCCCceEEEEecC
Confidence 99998 3221 11111 2222112899999995
No 15
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=96.15 E-value=0.017 Score=60.87 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=57.8
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCc-eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTL-QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l-~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
.++|-|+|+|-..+. .+||++||+.-... +--|..|.+..+.- .--|-++||+ +.+-+.++..+. .-.||+|
T Consensus 415 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~ik~~~~--~dDy~~m~Ev--l~RR~~r~~~~~-~~~PDLi 487 (621)
T PRK14671 415 PRRIECFDNSHFQGT--DYVSSMVCFVDGKPKKSDYRKFKLRSFEG--SDDYAAMREV--VTRRYSGSLAEE-LPLPDLI 487 (621)
T ss_pred CCEEEEEECCccCCC--CceEEEEEEECCccChhhCCeeecCCCCC--CCHHHHHHHH--HHHHhhcccccc-CCCCCEE
Confidence 579999999998653 57899999965321 22233333332211 2457777774 334444443110 0259999
Q ss_pred EEecccccCCCCCCchhhHhhh--cCCeeEEEeCC
Q 046070 173 MVDGNGLLHPRGFGLASHIGVL--ANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHlGv~--l~iPtIGVAKs 205 (309)
|||| |..| ++.|.-+=.. +++|+||.||+
T Consensus 488 lIDG-GkgQ---l~aa~~vl~~lg~~i~viglaK~ 518 (621)
T PRK14671 488 VIDG-GKGQ---VNSAWKVLQELGLSVPVIGLAKR 518 (621)
T ss_pred EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEec
Confidence 9998 3221 2222222112 26899999994
No 16
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=96.10 E-value=0.017 Score=60.56 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=57.7
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcC-CCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRAN-HFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p-~~~Pdvi 172 (309)
.++|-++|+|-..+. .+||++||+.-. +.--..+..-++.-. .--|-++||+ +.+-+.++..+.+ ...||+|
T Consensus 375 p~rIE~fDiSh~~G~--~~V~s~Vvf~~G--~~~k~~YR~f~i~~~-~dD~~~m~Ev--l~RR~~r~~~~~~~~~~PDLi 447 (577)
T PRK14668 375 PERIEGFDVSHAQGR--AVVGSNVCFVDG--SAETADYRRKKLTER-NDDYANMREL--VRWRAERAVEGRDDRPDPDLL 447 (577)
T ss_pred CCEEEEEECCccCCC--CceEEEEEEECC--ccCHHHcCeecCCCC-CChHHHHHHH--HHHHHHhhhccccCCCCCCEE
Confidence 578999999997653 578899999653 222222333333321 2456677764 3445555432200 0259999
Q ss_pred EEecccccCCCCCCchhhH--hhhcCCeeEEEeCC
Q 046070 173 MVDGNGLLHPRGFGLASHI--GVLANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHl--Gv~l~iPtIGVAKs 205 (309)
|||| |..| .+.|.-+ ..-+++|+||.||.
T Consensus 448 liDG-G~gQ---l~aa~~~l~elg~~i~v~glaK~ 478 (577)
T PRK14668 448 LIDG-GDGQ---LGAARDALAETGWDVPAIALAKA 478 (577)
T ss_pred EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEcC
Confidence 9998 3321 1222211 11127899999995
No 17
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=96.02 E-value=0.028 Score=59.47 Aligned_cols=100 Identities=19% Similarity=0.302 Sum_probs=56.9
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
.++|-++|+|...+. .+||++||+.-.. .+--|..|.+..+. -.--|-++||+ +.+-+.++..+. .-.||+|
T Consensus 396 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YRkf~Ik~~~--~~DDya~M~Ev--l~RR~~r~~~~~-~~~PDLi 468 (624)
T PRK14669 396 PSRIECFDISHIQGA--ETVASMVVWEDGKMKKSDYRKFIIKTVV--GVDDFASMREV--VTRRYSRLQEEK-QPMPGLV 468 (624)
T ss_pred CCeEEEEECCccCCC--CceEEEEEEECCccChhhCCeeecCCCC--CCCHHHHHHHH--HHHHhhcccccc-CCCCCEE
Confidence 479999999997653 5788999996431 12223333333221 12457777774 334454443221 1259999
Q ss_pred EEecccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070 173 MVDGNGLLHPRGFGLAS----HIGVLANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs 205 (309)
|||| |..| .+.|- -+|+. ++|+||+||.
T Consensus 469 lIDG-GkgQ---l~aa~~vl~elgl~-~i~vigLaK~ 500 (624)
T PRK14669 469 LIDG-GLGQ---LHAAAEALEAIGIT-DQPLASIAKR 500 (624)
T ss_pred EEeC-CHHH---HHHHHHHHHHcCCC-CCcEEEEecC
Confidence 9998 2221 11111 12211 4899999994
No 18
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=95.96 E-value=0.011 Score=62.07 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=58.3
Q ss_pred cccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcE
Q 046070 93 LLKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171 (309)
Q Consensus 93 ~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdv 171 (309)
.+++|-++|+|-..+. .+||++||+.-.. .+--|..|.+..+.- .--|-++||+ +.+-+.++..+. +..||+
T Consensus 382 ~p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~i~~~~~--~dDya~m~Ev--l~RR~~~~~~~~-~~~PDL 454 (598)
T PRK00558 382 PPYRIECFDISHIQGT--ATVASMVVFEDGGPDKSEYRRYNIKGVTG--GDDYAAMREV--LTRRYSRLLKEF-GPLPDL 454 (598)
T ss_pred CCCEEEEEECCccCCC--cceEEEEEEECCccChhhCCeeecCCCCC--CCHHHHHHHH--HHHHhhcccccc-CCCCCE
Confidence 3589999999987653 5789999996531 122233333332211 2456666664 334455543211 125999
Q ss_pred EEEecccccCCCCCCchhhH--hhhcCCeeEEEeCCc
Q 046070 172 LMVDGNGLLHPRGFGLASHI--GVLANLTTIGVGKNL 206 (309)
Q Consensus 172 ilVDG~Gi~HPR~~GlAsHl--Gv~l~iPtIGVAKs~ 206 (309)
||||| |..| ++.|.-+ ..-+++|+||+||..
T Consensus 455 iliDG-GkgQ---l~~a~~~l~~lg~~i~v~glaK~~ 487 (598)
T PRK00558 455 ILIDG-GKGQ---LNAAKEVLEELGLDIPVVGLAKGD 487 (598)
T ss_pred EEEeC-CHHH---HHHHHHHHHHCCCCCcEEEEEecC
Confidence 99998 2221 1122111 011369999999965
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.021 Score=59.83 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=59.0
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeec-cCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQ-VPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~-~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
+..|=+.|+|...+. .++|++||+.-. ...-..+-.-.+. .| .--|-++||+ +-+-+.++... -.||||
T Consensus 379 p~rIE~~D~Sh~~g~--~~V~smvvf~~g--~~~k~~YRry~i~~~~-~dDya~m~ev--l~RR~~~~~~~---~~Pdli 448 (581)
T COG0322 379 PYRIECFDISHIQGE--DTVGSMVVFEDG--GPSKKDYRRYNIKITG-GDDYASMREV--LTRRYSRLLKE---ELPDLI 448 (581)
T ss_pred ceeEEEeecCccccc--cceeEEEEEcCC--CCChhhcccccccCCC-CchHHHHHHH--HHHHhhhcccc---CCCCEE
Confidence 568999999998763 578899998543 1111222233333 11 1238888885 33444444332 259999
Q ss_pred EEecccccCCCCCCchhhHhh--hcCCeeEEEeCCc
Q 046070 173 MVDGNGLLHPRGFGLASHIGV--LANLTTIGVGKNL 206 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHlGv--~l~iPtIGVAKs~ 206 (309)
+||| |.. -+..|-.+=. -+++|.||+||..
T Consensus 449 ~iDG-Gkg---Ql~~a~~vl~~l~~~~~viglaK~~ 480 (581)
T COG0322 449 LIDG-GKG---QLNAAKEVLKELGLDIPVIGLAKGE 480 (581)
T ss_pred EEeC-CHH---HHHHHHHHHHHcCCCccEEEEEecC
Confidence 9998 322 1233333322 3488999999985
No 20
>PF09376 NurA: NurA domain; InterPro: IPR018977 This domain is found in several uncharacterised proteins and in NurA, a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius []. ; PDB: 1ZUP_B 2YGK_A 3TAZ_B 3TAL_A 3TAI_B.
Probab=94.69 E-value=0.67 Score=40.94 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=34.6
Q ss_pred CcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHc----C-CCCCChHHHHHHHHHH
Q 046070 239 GSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMT----C-KYRVPEPIRQADIRSR 293 (309)
Q Consensus 239 ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~----~-~~RlPEPlR~Ad~~sr 293 (309)
.++.-+.+|.. .+..+++|-.=..++.+...+++..+ . ...+|.||.+||..||
T Consensus 188 ~~~~~~yv~~~-~~~~~~rvE~p~~~~~~~~~~~l~~l~~~~~~~~GyP~~L~~Ad~~ak 246 (247)
T PF09376_consen 188 YEIYFFYVRLS-PGGPVLRVEIPRFVSSDEIDEILSRLASNDLSGRGYPYPLDLADELAK 246 (247)
T ss_dssp HEEEEEEEESS-TTSTEEEEECCCHHCHHHHHHHHHHHH--TTEETTCEHHHHHHHHHHS
T ss_pred ccEEEEEEEEC-CCCceEEEEecccccchhHHHHHHHHhhcccCCCCCchHHHHhccCCC
Confidence 34666777763 35678888742233345555554332 2 4789999999999875
No 21
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=93.08 E-value=0.34 Score=51.99 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=51.5
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCc-eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTL-QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l-~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
.++|-++|+|...+. .++|++||+.-... +--|..|.+..+ -+ --|-++||+ + .+++++. |. .||+|
T Consensus 472 p~rIE~~DiSh~~G~--~~v~~mVvf~~G~p~k~~YR~f~i~~~-~~--dD~~~m~ev--~---~RR~~~~-~~-~PDLi 539 (694)
T PRK14666 472 PHRIEAVDVSHTGGR--NTRVGMVVFEDGKPARDAYRTYAFEDG-EG--DDYGTLAAW--A---GRRVESG-PP-WPDLL 539 (694)
T ss_pred CCEEEEEECcccCCc--CceEEEEEEECCccChhhCCeeeCCCC-CC--ChHHHHHHH--H---HHHhcCC-CC-CCCEE
Confidence 578999999997653 46788999865321 222333333222 11 334444443 2 2223221 22 49999
Q ss_pred EEecccccCCCCCCchhhHhhh--cC--CeeEEEeCCc
Q 046070 173 MVDGNGLLHPRGFGLASHIGVL--AN--LTTIGVGKNL 206 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAsHlGv~--l~--iPtIGVAKs~ 206 (309)
||||= ..| .+.|-..=.. ++ +|+||+||..
T Consensus 540 liDGG-~gQ---l~aa~~~l~e~g~~~~~~v~~laK~~ 573 (694)
T PRK14666 540 LVDGG-RGQ---LAAVVRALEEAGMGGLFAVASIAKAR 573 (694)
T ss_pred EEcCC-HHH---HHHHHHHHHHcCCCCCccEEEEecCC
Confidence 99982 221 1111111011 24 8999999953
No 22
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=87.83 E-value=23 Score=33.19 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCCccEEEe---cCCCCCHHHHHHHHHHcCC--------CCCChHHHHHHHHHHHHHH
Q 046070 251 DTLKPIFIS---VGHCISLDTAVMIVKMTCK--------YRVPEPIRQADIRSRDYLQ 297 (309)
Q Consensus 251 ~~~kPIyVS---~Gh~isLetA~~iv~~~~~--------~RlPEPlR~Ad~~sr~~~r 297 (309)
+..+|+-++ .-.+++.++-.+++-.+|. -|+|.|+..||.+|+...+
T Consensus 242 Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~ 299 (302)
T PF02171_consen 242 GTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRN 299 (302)
T ss_dssp SSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHh
Confidence 455666544 2236789999999876551 5799999999999997664
No 23
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=76.57 E-value=41 Score=33.83 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHcC-C-------CCCChHHHHHHHHHHHHH
Q 046070 263 CISLDTAVMIVKMTC-K-------YRVPEPIRQADIRSRDYL 296 (309)
Q Consensus 263 ~isLetA~~iv~~~~-~-------~RlPEPlR~Ad~~sr~~~ 296 (309)
.++.++--+++-.+| - -++|.|++.||++|.+.+
T Consensus 382 ~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r 423 (426)
T cd04657 382 GFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARAR 423 (426)
T ss_pred CCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHh
Confidence 677788888876654 2 479999999999997654
No 24
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=70.59 E-value=18 Score=35.95 Aligned_cols=122 Identities=20% Similarity=0.333 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCcEEEEeccc-ccCCC-CCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCC
Q 046070 150 APVLLSLLDNMKKRANHFYPQVLMVDGNG-LLHPR-GFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENN 227 (309)
Q Consensus 150 ~P~il~al~kL~~~~p~~~PdvilVDG~G-i~HPR-~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~ 227 (309)
.-++-.+.-++..+ .||+|+|-||| +.||+ ..+++--.|-.-+.=+.+=.=+.-+.+| |+.+-+-
T Consensus 208 AGave~~v~~~~e~----~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g---------~P~~ip~ 274 (339)
T COG3367 208 AGAVESAVYEAEEK----NPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDG---------FPEPIPP 274 (339)
T ss_pred HHHHHHHHHHhhhc----CCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccC---------CCCcCCC
Confidence 34444555555543 49999999998 78998 4444433333323333332222222222 1111111
Q ss_pred CCCeeecc--CCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCC--hHHHHHHHHHHHHHH
Q 046070 228 NEDIIPLM--GGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVP--EPIRQADIRSRDYLQ 297 (309)
Q Consensus 228 ~g~~~~l~--~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlP--EPlR~Ad~~sr~~~r 297 (309)
..+.+.|+ -.+-+++|.++.| -.+|-+.|.+++.++. ++-+| .|+|.-.-..+++.+
T Consensus 275 leevi~l~e~l~~a~Vvgi~lNt-------------r~~dE~~are~~a~l~~efglP~~Dp~~~~~d~~~ev~~ 336 (339)
T COG3367 275 LEEVIALYELLSNAKVVGIALNT-------------RNLDEEEARELCAKLEAEFGLPVTDPLRFGEDVLLEVIR 336 (339)
T ss_pred HHHHHHHHHHccCCcEEEEEecc-------------cccChHHHHHHHHHHhhccCCccccccccchHHHHHHHH
Confidence 11112111 0224566666654 3466778999988876 67677 788855444555554
No 25
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=64.40 E-value=18 Score=32.31 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEecccc-cCCCCCC-chhhHhhhcCCeeEEEeCCcc
Q 046070 151 PVLLSLLDNMKKRANHFYPQVLMVDGNGL-LHPRGFG-LASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 151 P~il~al~kL~~~~p~~~PdvilVDG~Gi-~HPR~~G-lAsHlGv~l~iPtIGVAKs~L 207 (309)
..+.+.++++..+ .|+++|||-|- .+|=..+ .++.+-..++.|+|=|++..+
T Consensus 91 ~~i~~~~~~l~~~-----~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~ 144 (222)
T PRK00090 91 EKISAALRRLAQQ-----YDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKL 144 (222)
T ss_pred HHHHHHHHHHHhh-----CCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCC
Confidence 4566777777654 79999999975 4564445 667777788999999987644
No 26
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.69 E-value=26 Score=29.73 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEecccccC-CCCCC-chhhHhhhcCCeeEEEeCCcc
Q 046070 152 VLLSLLDNMKKRANHFYPQVLMVDGNGLLH-PRGFG-LASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 152 ~il~al~kL~~~~p~~~PdvilVDG~Gi~H-PR~~G-lAsHlGv~l~iPtIGVAKs~L 207 (309)
.+.+.++++..+ .|+++|||-|-++ |-..+ +.+.+--.++.|+|=|+...+
T Consensus 88 ~i~~~~~~l~~~-----~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~ 140 (166)
T TIGR00347 88 ELSKHLRTLEQK-----YDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKL 140 (166)
T ss_pred HHHHHHHHHHhc-----CCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCC
Confidence 467788887754 7999999997544 43343 456666678999999987754
No 27
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=50.21 E-value=2.7e+02 Score=27.61 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=87.8
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccc--hHHHHHHHHHHHhhcCCCCCcE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFRE--APVLLSLLDNMKKRANHFYPQV 171 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE--~P~il~al~kL~~~~p~~~Pdv 171 (309)
-.++.|+|++-...+...+++++.|++......+-... ....+. .+. -++ ...+.++++..+..+....|.=
T Consensus 189 ~~~iIGidv~~~~~~~~~~~~~a~vf~~~g~g~~~~~~---~~~~~~-~~~--~~~~~~~~l~~~l~~y~~~~~~~~P~r 262 (404)
T cd04659 189 ADLYIGIGFARSRDGEVRVTGCAQVFDSDGLGLILRGA---PIEEPT-EDR--SPADLKDLLKRVLEGYRESHRGRDPKR 262 (404)
T ss_pred CeEEEEEEEEEcCCCCEEEEEEEEEEcCCCCEEEEecC---ccCCcc-ccc--CHHHHHHHHHHHHHHHHHHcCCCCCeE
Confidence 46899999999865433444555666655312221111 111111 111 011 2566667777766543325877
Q ss_pred EEEecccccCCC-CCCchhhHhhh-cCCeeEEEeCCc---cccCCccccccccccccccCCCCCeeeccCCCCcEEEEEE
Q 046070 172 LMVDGNGLLHPR-GFGLASHIGVL-ANLTTIGVGKNL---HHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAM 246 (309)
Q Consensus 172 ilVDG~Gi~HPR-~~GlAsHlGv~-l~iPtIGVAKs~---L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~al 246 (309)
|+|=-.|....- --|+-.-+.-. ..+=.|-|.|+- +...+.... + -...+|-++.+-. .+ ..|
T Consensus 263 Iiihrdg~~~~~E~~~i~~a~~~~~~~i~~I~V~k~~~~R~f~~~~~~~---~----~np~~GT~v~~~~--~~---~~L 330 (404)
T cd04659 263 LVLHKDGRFTDEEIEGLKEALEELGIKVDLVEVIKSGPHRLFRFGTYPN---G----FPPRRGTYVKLSD--DE---GLL 330 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCceEEEEEEEecCCcceEEecCCCC---C----CCCCCceEEEeCC--Ce---EEE
Confidence 777555553211 11221111111 122224466662 221110000 0 0022344444311 01 011
Q ss_pred eec-----------CCCCccEEEecCC-CCCHHHHHHHHHHcC---------CCCCChHHHHHHHHHHHHH
Q 046070 247 RST-----------PDTLKPIFISVGH-CISLDTAVMIVKMTC---------KYRVPEPIRQADIRSRDYL 296 (309)
Q Consensus 247 rt~-----------~~~~kPIyVS~Gh-~isLetA~~iv~~~~---------~~RlPEPlR~Ad~~sr~~~ 296 (309)
.|+ .+..+|+-|-.-. ..++++-.+.+..+| .-|+|-|++.||++|+-+.
T Consensus 331 ~s~g~~~~~~~~~~~gtp~Pl~v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 331 WTHGSVPKYNTYPGMGTPRPLLLRRHSGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred EecCCccccccCCCCCCCCcEEEEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 111 2346787776522 257777777776643 2578999999999998654
No 28
>PHA02533 17 large terminase protein; Provisional
Probab=47.25 E-value=62 Score=33.93 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=39.5
Q ss_pred ccccEEEEEeeeeecCCCCeEEEEEEEEeCCC--ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCC
Q 046070 92 VLLKYIGGVDMSFSKEDPSIACGCIVVLDLQT--LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYP 169 (309)
Q Consensus 92 ~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~--l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~P 169 (309)
.+-++++|+|.|-..+ .+ .+++||++-+. .++|+... ... . .|-+.+ +.+++|...+ -.
T Consensus 312 ~~~~y~ig~D~a~G~~-~D--~s~~~V~~~~~~~~r~v~~~~-~~~--~-------~~~~~a---~~I~~l~~~Y---n~ 372 (534)
T PHA02533 312 EGHKYIATLDVSEGRG-QD--YSALHIIDITEYPYKQVAVYH-NNT--I-------SPLILP---DIIVDYLMEY---NE 372 (534)
T ss_pred CCceEEEEEECCCCCC-Cc--eeEEEEEccCCCCcEEEEEEe-cCC--C-------CHHHHH---HHHHHHHHHh---Cc
Confidence 3568999999886322 23 35678888543 45554211 111 1 122233 3444444442 13
Q ss_pred cEEEEecccccCC
Q 046070 170 QVLMVDGNGLLHP 182 (309)
Q Consensus 170 dvilVDG~Gi~HP 182 (309)
-.|.||.+|+-|+
T Consensus 373 a~i~id~tg~G~~ 385 (534)
T PHA02533 373 APVYIELNSTGVS 385 (534)
T ss_pred eEEEEecCCCcHH
Confidence 5699999987553
No 29
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=45.83 E-value=60 Score=29.54 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeccc-ccCCC-CCCchhhHhhhcCCeeEEEeCCccc
Q 046070 151 PVLLSLLDNMKKRANHFYPQVLMVDGNG-LLHPR-GFGLASHIGVLANLTTIGVGKNLHH 208 (309)
Q Consensus 151 P~il~al~kL~~~~p~~~PdvilVDG~G-i~HPR-~~GlAsHlGv~l~iPtIGVAKs~L~ 208 (309)
..+.+.+++|..+ .|+++|+|-| +.=|. .....+-+-..++.|+|=|++..+-
T Consensus 93 ~~i~~~~~~l~~~-----~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg 147 (231)
T PRK12374 93 TLMSNGLANLSEK-----VDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEG 147 (231)
T ss_pred HHHHHHHHHHHhh-----CCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcC
Confidence 4467888887754 7999999997 33332 1222334446789999999988763
No 30
>CHL00067 rps2 ribosomal protein S2
Probab=43.22 E-value=53 Score=30.65 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=24.5
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.||+|+|-. |..=-.|-+=.-.+||||||+.=+
T Consensus 161 ~P~~iiv~d-----~~~~~~ai~Ea~~l~IPvIaivDT 193 (230)
T CHL00067 161 LPDIVIIID-----QQEEYTALRECRKLGIPTISILDT 193 (230)
T ss_pred CCCEEEEeC-----CcccHHHHHHHHHcCCCEEEEEeC
Confidence 599988755 434347777777899999999544
No 31
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=41.02 E-value=33 Score=33.53 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=58.0
Q ss_pred CCccccccchHHHHHHHHHHHhhcCCCCCcEEEEeccc-ccCCCCCC--chhhHhhhcCCeeEEEeCCccccCCcccc--
Q 046070 141 VPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNG-LLHPRGFG--LASHIGVLANLTTIGVGKNLHHVDGLTHS-- 215 (309)
Q Consensus 141 IPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~G-i~HPR~~G--lAsHlGv~l~iPtIGVAKs~L~~dG~~~~-- 215 (309)
||.-|. ...+-.++.+...+ . |+|+|-|+| +.||-..| ++--.|-.=+-=++.-+=++-+.+|.+.-
T Consensus 166 v~~DFv---aGavE~~v~~~~~~----~-d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~i 237 (301)
T PF07755_consen 166 VPSDFV---AGAVEALVPEAAEE----H-DWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPI 237 (301)
T ss_dssp SBGGGH---HHHHHHHHHHHCCC------SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC-
T ss_pred hhhhhH---HHHHHHHHHhhCcC----C-CEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCC
Confidence 455555 45555666555432 3 999999999 88997655 33334444444455655555554453210
Q ss_pred -ccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCC--hHHHH
Q 046070 216 -GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVP--EPIRQ 287 (309)
Q Consensus 216 -~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlP--EPlR~ 287 (309)
.+......-+. ..... ..-+++|.+|.| .+++-++|.+.+.+.. ++.+| .|+|.
T Consensus 238 p~l~~~I~l~e~----la~~~-~~~~VvgIslNt-------------~~l~~~e~~~~~~~~~~e~glPv~Dp~r~ 295 (301)
T PF07755_consen 238 PPLEEEIELIEA----LAGTK-PPAKVVGISLNT-------------SGLSEEEAKAAIERIEEELGLPVTDPLRF 295 (301)
T ss_dssp --HHHHHHHHHH----CCCGC----EEEEEECC--------------TTS-HHHHHHHHHHHHHHH-S-EE-HHHH
T ss_pred CCHHHHHHHHHH----hhccC-CCccEEEEEEEC-------------CCCCHHHHHHHHHHHHHHHCCCeeecccC
Confidence 00000000000 00000 113477887764 3456788888888876 67777 77775
No 32
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=40.86 E-value=84 Score=31.30 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=44.6
Q ss_pred EEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCC----CCccccccchHHHHHHHHHHHhhcCCC---C
Q 046070 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPY----VPGFLAFREAPVLLSLLDNMKKRANHF---Y 168 (309)
Q Consensus 96 ~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PY----IPG~LAFRE~P~il~al~kL~~~~p~~---~ 168 (309)
+|.|+|-|.... + +.+++.+ .+++........ .+| +|-.-++.=...|..+++++..+. .+ +
T Consensus 2 ~iLgIETScd~t----s---vAl~~~~-~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a-~~~~~d 70 (345)
T PTZ00340 2 LALGIEGSANKL----G---VGIVTSD-GEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEEA-KITPSD 70 (345)
T ss_pred eEEEEEccchhh----E---EEEEECC-CcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHHc-CCCHHH
Confidence 578999997532 2 2344532 245543222222 444 233334333455555555554320 01 1
Q ss_pred CcEEEEecccccCCCCCCc----------hhhHhhhcCCeeEEE
Q 046070 169 PQVLMVDGNGLLHPRGFGL----------ASHIGVLANLTTIGV 202 (309)
Q Consensus 169 PdvilVDG~Gi~HPR~~Gl----------AsHlGv~l~iPtIGV 202 (309)
.|.|-| -++.|+ |-=|...+|+|.|||
T Consensus 71 id~Iav-------t~GPGl~~~LrVG~~~Ak~LA~a~~~PligV 107 (345)
T PTZ00340 71 ISLICY-------TKGPGMGAPLSVGAVVARTLSLLWGKPLVGV 107 (345)
T ss_pred CCEEEE-------ecCCCcHhhHHHHHHHHHHHHHHcCCCEeec
Confidence 343333 344554 555566889999999
No 33
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=40.15 E-value=5.9 Score=36.93 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=39.3
Q ss_pred CCCCccEE----EecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHH
Q 046070 250 PDTLKPIF----ISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRD 294 (309)
Q Consensus 250 ~~~~kPIy----VS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~ 294 (309)
.++.+|++ |+.+...|.+.+..++.++. +.++|+++++|+++++.
T Consensus 145 ~g~~~~l~~~gev~g~~l~t~~~~~pi~vS~g~~i~l~sal~l~~~l~~~ 194 (212)
T COG1515 145 RGAGKPLYDKGEVLGGVLRTKERAKPIFVSPGHRISLPSALKLAQRLSKG 194 (212)
T ss_pred cCcceeEecCCeEEEEEEEecccCCCeEEccCCccCHHHHHHHHHHHccc
Confidence 45677887 88999999999999999987 46999999999999987
No 34
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=38.90 E-value=49 Score=28.96 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=41.4
Q ss_pred eccCCCCccccccchHHH-HHH--HHHHHhhcCCCCCcEEEEecccccC-CCC-CCchhhHhhhcCCeeEEEeCCcc
Q 046070 136 LQVPYVPGFLAFREAPVL-LSL--LDNMKKRANHFYPQVLMVDGNGLLH-PRG-FGLASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 136 ~~~PYIPG~LAFRE~P~i-l~a--l~kL~~~~p~~~PdvilVDG~Gi~H-PR~-~GlAsHlGv~l~iPtIGVAKs~L 207 (309)
...|..|.+.+-+|...+ ++. ++++..+ -|+++|+|-|-.. |-- -.+-..+.-.+|.|+|=|+...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-----~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~ 140 (199)
T PF13500_consen 69 FDEPASPHLAAELEGVDIDLERIIYKELAEE-----YDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRL 140 (199)
T ss_dssp ESSSS-HHHHHHHHT----HHHHHHHHCHTT-----TCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESST
T ss_pred cCcccCHHHHhhccCCcccHHHHHHHHHhhc-----CCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCC
Confidence 344556677766653222 222 3566554 7999999998654 422 24556666788999999998876
No 35
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=37.59 E-value=48 Score=27.27 Aligned_cols=61 Identities=25% Similarity=0.259 Sum_probs=38.4
Q ss_pred cchhhhccCcchhhh-hhhhhhhh-hhhHHHHHhcCCCChhHHHHHHHHHHHHHHH-Hhhcccc
Q 046070 9 PHLRREFHSIPEQMS-SCYRSYME-NYCEEEREALASPDPAAQAQLNQWTEIQDEL-KKRLITE 69 (309)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~L-~~~vi~~ 69 (309)
-||-|++-.+-+|.. |.||+|-- -.-|.+|+++..-||+.-..+-.=.+-|.++ ++++++.
T Consensus 10 lsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~ 73 (94)
T KOG3801|consen 10 LSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIG 73 (94)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666766 99999964 5667899999999997555442223333333 3444443
No 36
>PRK10481 hypothetical protein; Provisional
Probab=35.92 E-value=60 Score=30.43 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=38.6
Q ss_pred eeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEE
Q 046070 135 RLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIG 201 (309)
Q Consensus 135 ~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIG 201 (309)
...-||+. ....+.++-++|... .+|+|+.|+-|+.- -++..+-..+|+|+|-
T Consensus 159 ~~aspy~~------~~~~l~~aa~~L~~~----gaD~Ivl~C~G~~~----~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 159 ALASPYHG------SEEELIDAGKELLDQ----GADVIVLDCLGYHQ----RHRDLLQKALDVPVLL 211 (224)
T ss_pred eecCCCCC------CHHHHHHHHHHhhcC----CCCEEEEeCCCcCH----HHHHHHHHHHCcCEEc
Confidence 33458862 123677788888754 48999999999873 3477787889999984
No 37
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=1e+02 Score=30.77 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=10.3
Q ss_pred hhcCCeeEEEeCCcc
Q 046070 193 VLANLTTIGVGKNLH 207 (309)
Q Consensus 193 v~l~iPtIGVAKs~L 207 (309)
+.+++|-||| +-+
T Consensus 99 ~a~~kPli~V--nH~ 111 (342)
T COG0533 99 LALNKPLIPV--NHL 111 (342)
T ss_pred HHhCCCEeec--chH
Confidence 4679999999 644
No 38
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=34.26 E-value=63 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.||+|+.|..-. ++-.....++|+|++.--
T Consensus 94 ~pDlVIsD~~~~--------~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 94 RPDLVISDFYPL--------AALAARRAGIPVIVISNQ 123 (318)
T ss_pred CCCEEEEcChHH--------HHHHHHhcCCCEEEEEeh
Confidence 599999996544 444556789999999644
No 39
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=32.54 E-value=56 Score=33.87 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=77.1
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEE
Q 046070 35 EEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACG 114 (309)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~A 114 (309)
+...+.+..+.++.++..++-+++|..|++++-..-.. ......+ ..-=+|+|.|-.--|+ .++
T Consensus 193 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~i~Iagt~Tg~GKT----~vt 256 (476)
T PRK06278 193 ENFLKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNN----------KKEERNK--PKGIILLATGSESGKT----FLT 256 (476)
T ss_pred HHHHHHcCCChHHHHHHHHHhHHHHHHHHHHhcccccc----------cchhhcC--CCeEEEEeCCCCCCHH----HHH
Confidence 33444666777777778888889999998876443221 1111111 1223677776533221 222
Q ss_pred EEEEEeCCCceEEEEEEEEEeeccCCC---Cccccccc-----------hHH---HHHHHHHHHhhcCCCCCcEEEEecc
Q 046070 115 CIVVLDLQTLQIVYEDYSLLRLQVPYV---PGFLAFRE-----------APV---LLSLLDNMKKRANHFYPQVLMVDGN 177 (309)
Q Consensus 115 a~VVl~~~~l~vv~~~~~~~~~~~PYI---PG~LAFRE-----------~P~---il~al~kL~~~~p~~~PdvilVDG~ 177 (309)
+..+--+.. ++ ...++--.|| |.++.|++ ... .-+.++.+... ..|+++|.|.
T Consensus 257 ~~L~~al~~-~v-----~~fK~GpD~id~~p~~~~~~~~~sp~~a~n~~~d~~~~~~~~~~~~~~~----~~DivIIEGa 326 (476)
T PRK06278 257 TSIAGKLRG-KV-----FVAKIGPDVRDIVPSLYLLREKMTKYNSIKIGDRGWSDVEEFLEFVKNS----DYDYYIIEGV 326 (476)
T ss_pred HHHHHHHHh-Ce-----EEEcCCCChhhcCCcceecccccCChHHHhhcCCcccCHHHHHHHHHhc----CCCEEEEECC
Confidence 111101111 11 1111222333 45544332 211 11233333221 3699999998
Q ss_pred -cccCCCCC----CchhhHhhhcCCeeEEEeCCccc
Q 046070 178 -GLLHPRGF----GLASHIGVLANLTTIGVGKNLHH 208 (309)
Q Consensus 178 -Gi~HPR~~----GlAsHlGv~l~iPtIGVAKs~L~ 208 (309)
|+.-|... +...++...++.|+|=|+...+-
T Consensus 327 gGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g 362 (476)
T PRK06278 327 MGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKS 362 (476)
T ss_pred CCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCC
Confidence 67777433 35568888999999999877553
No 40
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.03 E-value=52 Score=30.25 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=26.9
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.||+|+|- .|+.=-.|-+=.-.+||||||+.-+
T Consensus 108 ~Pdlliv~-----dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 108 EPEVVVVT-----DPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCEEEEE-----CCccccHHHHHHHHcCCCEEEEeeC
Confidence 49999984 5777778888888999999999544
No 41
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=30.47 E-value=80 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhh
Q 046070 42 ASPDPAAQAQLNQWTEIQDELKKR 65 (309)
Q Consensus 42 ~~~~~~~~~~~~~~~~~Q~~L~~~ 65 (309)
...+.+....+.+++++|+.||+.
T Consensus 48 ~s~~t~~ss~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 48 LSSDTGLSSVLSQLKRIQRDLRGL 71 (76)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCccHHHHHHHHHHHHhhCCC
Confidence 445556778999999999999974
No 42
>PRK00784 cobyric acid synthase; Provisional
Probab=28.42 E-value=1.4e+02 Score=30.75 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEecccccC-CCCC---CchhhHhhhcCCeeEEEeCCcc
Q 046070 151 PVLLSLLDNMKKRANHFYPQVLMVDGNGLLH-PRGF---GLASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 151 P~il~al~kL~~~~p~~~PdvilVDG~Gi~H-PR~~---GlAsHlGv~l~iPtIGVAKs~L 207 (309)
..+.+.++++... .|+++|+|-|=+. +.-+ ....++-..+|.|+|=|+...+
T Consensus 113 ~~I~~~~~~l~~~-----~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~PVILV~~~~~ 168 (488)
T PRK00784 113 EAVLESLDRLAAE-----YDVVVVEGAGSPAEINLRDRDIANMGFAEAADAPVILVADIDR 168 (488)
T ss_pred HHHHHHHHHHHhc-----CCEEEEECCCCccccCcccCCchhHHHHHHcCCCEEEEEeCCc
Confidence 5577788777654 7999999996443 2111 2355666788999999987644
No 43
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=28.42 E-value=1.2e+02 Score=28.95 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHHhhc-----CCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 146 AFREAPVLLSLLDNMKKRA-----NHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 146 AFRE~P~il~al~kL~~~~-----p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
...|.-.+.+-.++|.... ..-.||+|+|-. |..=-.|-+=.-.+||||||+.=+
T Consensus 130 ~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~iii~d-----~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 130 TKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVD-----PNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred CHHHHHHHHHHHHHHHHhccCccccccCCCEEEEeC-----CCccHHHHHHHHHhCCCEEEEeeC
Confidence 3455555555555554321 112499988754 545456666667889999999543
No 44
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=27.66 E-value=1.4e+02 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.+|+|+ |+ -.|++-+|.++...+|+|.+-+-|.
T Consensus 46 ~~d~iv----gi-~~~G~~~A~~la~~L~~~~~~i~k~ 78 (169)
T TIGR01090 46 NIDYIV----GP-EARGFIFGAALAYKLGVGFVPVRKP 78 (169)
T ss_pred CCCEEE----ee-hhccHHHHHHHHHHHCCCEEEEEeC
Confidence 467666 33 3578899999999999997655544
No 45
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=26.13 E-value=93 Score=27.53 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=34.6
Q ss_pred eeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhc------CCeeEEE
Q 046070 135 RLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLA------NLTTIGV 202 (309)
Q Consensus 135 ~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l------~iPtIGV 202 (309)
.+..+|....+. =+-.++.++.-+.+. +||||+..|-|+.=| .|-+|.++ +.++|=|
T Consensus 65 ~v~q~~~~~~~~--~l~~~~~~~~il~r~----rPdvii~nGpg~~vp-----~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 65 EVGQSYLTSIFT--TLRAFLQSLRILRRE----RPDVIISNGPGTCVP-----VCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred EechhhHhhHHH--HHHHHHHHHHHHHHh----CCCEEEEcCCceeeH-----HHHHHHHHHHhhccCCcEEEE
Confidence 344444433222 245666777777665 599999999998865 33344444 6666544
No 46
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.95 E-value=20 Score=34.29 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=42.7
Q ss_pred CCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Q 046070 229 EDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYL 296 (309)
Q Consensus 229 g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~~~RlPEPlR~Ad~~sr~~~ 296 (309)
|+...|+.-+.+.+..++-. +.-||+..+||-+|. |-.++| ...|.|.|+-.|..++....
T Consensus 86 Gs~eDL~~FN~e~varai~~---~~~PvisaIGHe~D~-ti~D~v---Ad~ra~TPtaaAe~~~~~~~ 146 (319)
T PF02601_consen 86 GSIEDLWAFNDEEVARAIAA---SPIPVISAIGHETDF-TIADFV---ADLRAPTPTAAAELIVPDRR 146 (319)
T ss_pred CChHHhcccChHHHHHHHHh---CCCCEEEecCCCCCc-hHHHHH---HHhhCCCHHHHHHHHhhhHH
Confidence 44555655566777666763 468999999999997 333333 35689999999998766543
No 47
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.08 E-value=83 Score=27.76 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=26.7
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 147 FREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 147 FRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
-|=...+++.++.+..+ .++|+++ +-|.+ .+|+.-+.-.+..|+|||=
T Consensus 38 HR~p~~l~~~~~~~~~~----~~~viIa-~AG~~----a~Lpgvva~~t~~PVIgvP 85 (150)
T PF00731_consen 38 HRTPERLLEFVKEYEAR----GADVIIA-VAGMS----AALPGVVASLTTLPVIGVP 85 (150)
T ss_dssp TTSHHHHHHHHHHTTTT----TESEEEE-EEESS------HHHHHHHHSSS-EEEEE
T ss_pred cCCHHHHHHHHHHhccC----CCEEEEE-ECCCc----ccchhhheeccCCCEEEee
Confidence 45455666777776543 2566554 22321 3344444457899999993
No 48
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=24.53 E-value=1.7e+02 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHhhc-----CCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 147 FREAPVLLSLLDNMKKRA-----NHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 147 FRE~P~il~al~kL~~~~-----p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
..|.-.+.+-.++|+... ..-.||+|+|-. |+.--.|-+=.-.+||||||+.=+
T Consensus 129 kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vii~d-----~~~~~~ai~Ea~~l~IP~I~ivDT 187 (225)
T TIGR01011 129 KKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVID-----PVKEKIAVAEARKLGIPVVAIVDT 187 (225)
T ss_pred HHHHHHHHHHHHHHHHhccCccccccCCCEEEEeC-----CCccHHHHHHHHHcCCCEEEEeeC
Confidence 345544555555554321 112499988754 555555666666889999999533
No 49
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.13 E-value=4.5e+02 Score=22.87 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHHHHH
Q 046070 280 RVPEPIRQADIRSRDY 295 (309)
Q Consensus 280 RlPEPlR~Ad~~sr~~ 295 (309)
.+|.-+|.|=-++|.+
T Consensus 124 ~~p~~~R~AIslAR~l 139 (150)
T PF14639_consen 124 DYPPLLRYAISLARYL 139 (150)
T ss_dssp T--HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3789999998888864
No 50
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=24.06 E-value=1.6e+02 Score=32.19 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=38.0
Q ss_pred eccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 136 LQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 136 ~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
..-|||.-+-...=...+.+.++.+.+-+ +++|++|.+| +||.- ..+++....++|.|.|-
T Consensus 384 ~~S~~iGDl~~~~~~~~~~~~~~~~~~l~-~~~p~~i~~D----~HP~y--~st~~a~~~~~~~~~vQ 444 (711)
T TIGR00143 384 YLSQHIGDLSVYETYKFFKEALNFFLRIY-DFEPQDIVCD----LHPQY--NTTQYAEELSLPVLRVQ 444 (711)
T ss_pred EEcCcccCcCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEe----CCCCc--hhHHHHHHcCCCeeeee
Confidence 45688887766555566666666665432 4569999999 56654 23344444456665553
No 51
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=24.00 E-value=1.2e+02 Score=28.67 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=20.6
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGK 204 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAK 204 (309)
+||+|+.||-=.+ ......++||+|.+.-
T Consensus 93 ~pDlVi~d~~~~~--------~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 93 NPDLIISDFEYST--------VVAAKLLKIPVICISN 121 (321)
T ss_pred CCCEEEECCchHH--------HHHHHhcCCCEEEEec
Confidence 5999999943323 3344568999998874
No 52
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=23.56 E-value=2.4e+02 Score=28.85 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=47.3
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccch---HHHHHHHHHHHhhcC-----
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREA---PVLLSLLDNMKKRAN----- 165 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~---P~il~al~kL~~~~p----- 165 (309)
-+++.|||+.-.. +. +|++|....+++... .......++.||+--+--- -.+.++++++..+.+
T Consensus 3 ~~~~lgIDiGTt~-----~K--avl~d~~~~~~~~~~-~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~ 74 (502)
T COG1070 3 MKYVLGIDIGTTS-----VK--AVLFDEDGGEVVATA-RFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDA 74 (502)
T ss_pred ccEEEEEEcCCCc-----EE--EEEEeCCCCeEEEEe-eccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhh
Confidence 3689999996432 22 256777656666532 2233334467777433222 334455555554311
Q ss_pred -------CCCCcEEEEeccccc--------CCCCCCchhhH
Q 046070 166 -------HFYPQVLMVDGNGLL--------HPRGFGLASHI 191 (309)
Q Consensus 166 -------~~~PdvilVDG~Gi~--------HPR~~GlAsHl 191 (309)
....+++++|.+|.. ..|..+.+..+
T Consensus 75 I~aI~is~~~~g~vllD~~g~~L~~~i~w~D~R~~~~~~~l 115 (502)
T COG1070 75 IAAIGISGQGHGLVLLDANGEPLRPAILWNDTRAAEEVEEL 115 (502)
T ss_pred ceEEEEeccccceEEECCCCCCccccceecchhhHHHHHHH
Confidence 112445667776644 44555555555
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.48 E-value=1.3e+02 Score=22.76 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhc-CCeeEEEeCC
Q 046070 155 SLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLA-NLTTIGVGKN 205 (309)
Q Consensus 155 ~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l-~iPtIGVAKs 205 (309)
++++.++.. .||++++|.. ...-.+..++..+-..- ++|+|.++.+
T Consensus 34 ~~~~~~~~~----~~d~iiid~~-~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 34 EALELLKKH----PPDLIIIDLE-LPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHS----TESEEEEESS-SSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHhccc----CceEEEEEee-eccccccccccccccccccccEEEecCC
Confidence 444555544 4999999943 22234555666664433 8999999744
No 54
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=22.22 E-value=4.3e+02 Score=22.65 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=38.6
Q ss_pred EEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEe
Q 046070 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175 (309)
Q Consensus 96 ~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVD 175 (309)
+|.|||-+... +++|. +-.+-+..++++..+...+...| +.-| +-.|.+.++++-..+ .||.+.+-
T Consensus 1 rILGIDPGl~~----~G~av-~~~~~~~~~~~~~g~i~t~~~~~-----~~~r-l~~I~~~l~~~i~~~---~Pd~vaiE 66 (154)
T cd00529 1 RILGIDPGSRN----TGYGV-IEQEGRKLIYLASGVIRTSSDAP-----LPSR-LKTIYDGLNEVIDQF---QPDVVAIE 66 (154)
T ss_pred CEEEEccCcCc----eEEEE-EEeeCCeEEEEEeeEEECCCCCC-----HHHH-HHHHHHHHHHHHHHh---CCCEEEEE
Confidence 47899998753 45543 22233445555544433332222 1222 444556666665543 59999999
Q ss_pred ccccc
Q 046070 176 GNGLL 180 (309)
Q Consensus 176 G~Gi~ 180 (309)
..-..
T Consensus 67 ~~~~~ 71 (154)
T cd00529 67 RVFFA 71 (154)
T ss_pred Ehhcc
Confidence 86544
No 55
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.02 E-value=85 Score=32.45 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=28.9
Q ss_pred eeccCCCCccccccchHHH---HHHHHHHHhhcCCCCCcEEEEecccccCCC
Q 046070 135 RLQVPYVPGFLAFREAPVL---LSLLDNMKKRANHFYPQVLMVDGNGLLHPR 183 (309)
Q Consensus 135 ~~~~PYIPG~LAFRE~P~i---l~al~kL~~~~p~~~PdvilVDG~Gi~HPR 183 (309)
+..+||.. ++=|..+. .+.+++.+++ ..|||+||-.|+.|..
T Consensus 154 k~~iP~yg---syte~dpv~ia~egv~~fKke----~fdvIIvDTSGRh~qe 198 (483)
T KOG0780|consen 154 KARVPFYG---SYTEADPVKIASEGVDRFKKE----NFDVIIVDTSGRHKQE 198 (483)
T ss_pred hhCCeeEe---cccccchHHHHHHHHHHHHhc----CCcEEEEeCCCchhhh
Confidence 45565554 55566443 4556666666 4899999999999874
No 56
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=21.77 E-value=57 Score=33.73 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=19.5
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGK 204 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAK 204 (309)
+.|++++|-. .+=.+|+|-|+| ++|+|+++=
T Consensus 136 kFDlvi~e~~---~~c~~~la~~~~---~~p~i~~ss 166 (507)
T PHA03392 136 KFDLLVTEAF---LDYPLVFSHLFG---DAPVIQISS 166 (507)
T ss_pred ceeEEEeccc---chhHHHHHHHhC---CCCEEEEcC
Confidence 5899999942 232333333332 899999954
No 57
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.14 E-value=1.1e+02 Score=28.98 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=31.7
Q ss_pred CCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEE
Q 046070 141 VPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGV 202 (309)
Q Consensus 141 IPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGV 202 (309)
+.|-++++|+..+++. .|+++-.=-|.. |++..+|+||||+
T Consensus 236 l~g~~sL~el~ali~~------------a~l~I~~DSGp~---------HlAaA~~~P~i~l 276 (334)
T TIGR02195 236 LAGETSLDEAVDLIAL------------AKAVVTNDSGLM---------HVAAALNRPLVAL 276 (334)
T ss_pred CCCCCCHHHHHHHHHh------------CCEEEeeCCHHH---------HHHHHcCCCEEEE
Confidence 3788898887776653 477776666665 7889999999999
No 58
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=20.08 E-value=1.9e+02 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=24.8
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCc
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNL 206 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~ 206 (309)
.||+|+|-. |+.=-+|-+=...+||||||+.=|-
T Consensus 152 ~Pd~viv~d-----~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVID-----TNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeC-----CccchHHHHHHHHcCCCEEEEeeCC
Confidence 499988754 5555566666678999999996553
Done!