Query 046070
Match_columns 309
No_of_seqs 158 out of 543
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ga2_A Endonuclease V; alpha-b 100.0 6.1E-74 2.1E-78 529.1 25.4 224 52-306 14-240 (246)
2 3goc_A Endonuclease V; alpha-b 100.0 6.9E-73 2.4E-77 519.6 26.3 214 51-299 13-227 (237)
3 2w36_A Endonuclease V; hypoxan 100.0 7.3E-72 2.5E-76 510.4 16.4 218 53-298 4-223 (225)
4 2qh9_A UPF0215 protein AF_1433 100.0 1.1E-34 3.9E-39 257.8 8.3 167 96-299 8-179 (184)
5 3c65_A Uvrabc system protein C 97.2 0.00023 7.8E-09 65.0 4.7 99 94-205 14-118 (226)
6 2nrr_A Uvrabc system protein C 97.2 0.00031 1.1E-08 61.0 4.4 93 94-205 17-114 (159)
7 2nrt_A Uvrabc system protein C 97.1 0.00077 2.6E-08 61.3 6.2 92 94-205 22-119 (220)
8 1u04_A Argonaute, hypothetical 78.0 65 0.0022 33.9 16.3 49 250-298 689-755 (771)
9 1yvu_A Hypothetical protein AQ 65.0 48 0.0017 34.4 11.7 48 251-298 636-692 (706)
10 2ygk_A NURA; hydrolase, DNA re 61.1 19 0.00064 34.1 7.2 47 245-293 260-310 (339)
11 3qxc_A Dethiobiotin synthetase 56.2 26 0.00089 31.2 6.9 53 150-207 118-172 (242)
12 3of5_A Dethiobiotin synthetase 43.9 29 0.00099 30.3 5.1 52 151-207 97-151 (228)
13 3en9_A Glycoprotease, O-sialog 42.4 1E+02 0.0034 30.2 9.3 94 95-202 6-109 (540)
14 3bbn_B Ribosomal protein S2; s 40.2 30 0.001 31.2 4.7 52 149-205 133-189 (231)
15 2p6p_A Glycosyl transferase; X 40.0 39 0.0013 30.4 5.5 29 168-203 107-135 (384)
16 2vqe_B 30S ribosomal protein S 38.8 23 0.00079 32.5 3.7 33 168-205 158-190 (256)
17 2jqq_A Conserved oligomeric go 36.5 14 0.00046 33.0 1.7 49 15-64 17-65 (204)
18 2yjn_A ERYCIII, glycosyltransf 34.9 47 0.0016 30.8 5.3 41 152-203 132-172 (441)
19 3ho1_A Argonaute; argonaute, p 31.6 62 0.0021 33.7 5.9 56 251-308 612-677 (685)
20 3fgn_A Dethiobiotin synthetase 31.2 47 0.0016 29.7 4.4 53 150-207 113-168 (251)
21 3oti_A CALG3; calicheamicin, T 30.7 46 0.0016 30.2 4.4 29 168-203 130-158 (398)
22 2ivn_A O-sialoglycoprotein end 27.7 1.3E+02 0.0045 27.5 7.0 93 96-202 2-105 (330)
23 3rsc_A CALG2; TDP, enediyne, s 27.4 74 0.0025 28.8 5.2 30 167-203 117-147 (415)
24 4fzr_A SSFS6; structural genom 27.1 78 0.0027 28.6 5.3 30 168-204 123-152 (398)
25 3tsa_A SPNG, NDP-rhamnosyltran 26.2 79 0.0027 28.3 5.1 31 168-205 114-144 (391)
26 3qvl_A Putative hydantoin race 26.0 75 0.0026 28.2 4.8 45 149-203 54-98 (245)
27 2etj_A Ribonuclease HII, RNAse 25.6 50 0.0017 30.2 3.6 22 153-179 102-123 (250)
28 3otg_A CALG1; calicheamicin, T 24.6 85 0.0029 28.2 5.0 31 168-205 130-160 (412)
29 3ia7_A CALG4; glycosysltransfe 24.4 90 0.0031 27.8 5.1 30 167-203 101-131 (402)
30 3twe_A Alpha4H; unknown functi 24.4 72 0.0025 19.3 2.9 18 47-64 2-19 (27)
31 2iyf_A OLED, oleandomycin glyc 24.2 99 0.0034 28.1 5.4 31 168-205 104-134 (430)
32 2eq5_A 228AA long hypothetical 23.8 1.8E+02 0.0061 24.6 6.7 57 136-202 42-103 (228)
33 2rf4_B DNA-directed RNA polyme 23.7 98 0.0034 24.1 4.3 29 37-65 46-74 (87)
34 3c6a_A Terminase large subunit 23.6 2.8E+02 0.0095 24.6 8.1 81 93-196 58-140 (232)
35 2iya_A OLEI, oleandomycin glyc 22.8 1.3E+02 0.0045 27.4 6.0 29 168-203 109-137 (424)
36 1rrv_A Glycosyltransferase GTF 22.5 57 0.002 29.9 3.4 34 168-206 94-128 (416)
37 4b4k_A N5-carboxyaminoimidazol 21.3 76 0.0026 27.8 3.7 54 137-203 49-107 (181)
38 1io2_A Ribonuclease HII; endon 20.9 44 0.0015 29.5 2.2 24 151-179 86-109 (213)
No 1
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=100.00 E-value=6.1e-74 Score=529.06 Aligned_cols=224 Identities=29% Similarity=0.507 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCC-CCeEEEEEEEEeCCCceEEEEE
Q 046070 52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKED-PSIACGCIVVLDLQTLQIVYED 130 (309)
Q Consensus 52 ~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~-~~~a~Aa~VVl~~~~l~vv~~~ 130 (309)
.++|+++|++|+++|+++|.+++ .++++|||||+||.+++ ...++||+||++|+++++|++.
T Consensus 14 ~~~~~~~Q~~L~~~v~~~~~~~~-----------------~~~~~VaGvDvsy~~~~~~~~~~aa~Vvl~~~~l~vv~~~ 76 (246)
T 3ga2_A 14 EQDFLQVQFNLKNRINLSPTIHP-----------------DSINTTAGVDLAYWEQDGEPYGVCCIIVIDADTKEVIEKV 76 (246)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCG-----------------GGCSEEEEEEEEEEEETTEEEEEEEEEEEETTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhheecCCCCC-----------------CCceEEEEEEeeeecCCCCeEEEEEEEEEECCCCcEEEEE
Confidence 68999999999999999886421 36899999999998643 3568899999999999999999
Q ss_pred EEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccC
Q 046070 131 YSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVD 210 (309)
Q Consensus 131 ~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~d 210 (309)
++.++++||||||||||||+|+|++||++|+.+ ||+||||||||+|||+||||||+|+++|+||||||||+|+++
T Consensus 77 ~~~~~~~~PYIPG~LaFRE~P~ll~al~~L~~~-----PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L~~~ 151 (246)
T 3ga2_A 77 HSMGRISVPYVSGFLAFRELPLIIEAAKKLETE-----PDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKTYLKIK 151 (246)
T ss_dssp EEEEECCCCSSSSCGGGGTHHHHHHHHHHCSSC-----CSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESSCCCCT
T ss_pred EEEcccCCCCCCCchhhhhHHHHHHHHHhcCCC-----CCEEEEcCcEEecCCCcchhheeeeecCCCEEeeeccccccC
Confidence 999999999999999999999999999999864 999999999999999999999999999999999999999987
Q ss_pred CccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC--CCCCChHHHHH
Q 046070 211 GLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQA 288 (309)
Q Consensus 211 G~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~--~~RlPEPlR~A 288 (309)
|. .+.+++.++|++.+|++ +|+++|+++||++ ++||||||+||+|||++|+++|++|+ +||+|||||+|
T Consensus 152 g~-------~~~~~~~~~g~~~~l~~-~ge~vG~vlRt~~-~~kPlyVS~Gh~i~l~~A~~~v~~~~~~~yRlPEP~R~A 222 (246)
T 3ga2_A 152 GC-------DFVTPEIEVGAYTDIII-DGEVYGRALRTRR-DVKPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVRLA 222 (246)
T ss_dssp TC-------CCCCCCSSTTCEEEEEE-TTEEEEEEECSST-TSCCEEEEEEESSCHHHHHHHHHHTCCTTCSSCHHHHHH
T ss_pred Cc-------cccCccccCCceeeecc-CCEEEEEEEEeCC-CCCCEEEeccCCCCHHHHHHHHHHHccCCCCCChHHHHH
Confidence 64 34567778899999874 6999999999875 78999999999999999999999998 49999999999
Q ss_pred HHHHHHHHHhhcchhhhh
Q 046070 289 DIRSRDYLQKHQSTCLLQ 306 (309)
Q Consensus 289 d~~sr~~~r~~~~~~~~~ 306 (309)
|++|+++++.....+.|.
T Consensus 223 D~~a~~~r~~l~~~~~~~ 240 (246)
T 3ga2_A 223 DLETHVLRTFYQKNHVLE 240 (246)
T ss_dssp HHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHhhHh
Confidence 999999988877776654
No 2
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=100.00 E-value=6.9e-73 Score=519.61 Aligned_cols=214 Identities=37% Similarity=0.602 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEE
Q 046070 51 QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYED 130 (309)
Q Consensus 51 ~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~ 130 (309)
..++|+++|++|+++|+++|... ..++++|||||+||.++ ++.++||+||++|++++++++.
T Consensus 13 ~~~~a~~~Q~~L~~~v~~~~~~~-----------------~~~~~~VaGvDvsy~~~-~~~~~Aa~Vvl~~~~l~~v~~~ 74 (237)
T 3goc_A 13 TEEEARAVQDELRGRVILDEPGP-----------------PPGTGRVTGVDVAYDDE-RDVVVAAAVVLDAATLDVVAEA 74 (237)
T ss_dssp SHHHHHHHHHHHGGGCCCSCCCC-----------------CTTSSEEEEEEEEECSS-SSEEEEEEEEEETTTCCEEEEE
T ss_pred CHHHHHHHHHHHHhheeccCCCC-----------------CCCceEEEEEEEEeecC-CceEEEEEEEEECCCCcEEEEE
Confidence 36899999999999999987521 03589999999999765 4578999999999999999999
Q ss_pred EEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccC
Q 046070 131 YSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVD 210 (309)
Q Consensus 131 ~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~d 210 (309)
++.++++||||||||||||+|++++||++|+.+ ||+||||||||+|||+||||||+|+++|+||||||||+|++
T Consensus 75 ~~~~~~~~PYIPG~LaFRE~P~ll~al~~L~~~-----PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L~g- 148 (237)
T 3goc_A 75 TAVGEVSFPYVPGLLAFREIPTVLAALDALPCP-----PGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNPFTF- 148 (237)
T ss_dssp EEEEECCSCCCTTCGGGGTHHHHHHHHHTSSSC-----CSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESSCTTC-
T ss_pred EEeccccCCCCcchhhhhhHHHHHHHHHhcCCC-----CCEEEEeCceeecCCCcchhheeeeecCCCEEeeecccccc-
Confidence 999999999999999999999999999999864 99999999999999999999999999999999999999993
Q ss_pred CccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHH
Q 046070 211 GLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQAD 289 (309)
Q Consensus 211 G~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad 289 (309)
.+.++++++|++.+|+ .+|+++|+++||++ ++||||||+||+|||++|+++|++|+ +||+|||||+||
T Consensus 149 ---------~~~~~~~~~G~~~~l~-~~ge~vG~~lRt~~-~~kPlyVS~Ghrisl~~A~~~v~~~~~~yRlPEP~R~AD 217 (237)
T 3goc_A 149 ---------SYEDPGAPRGSAAPLL-AGADEVGRALRTQS-GVKPVFVSVGHRVDLDHACAHTLALTPKYRIPETTRRAD 217 (237)
T ss_dssp ---------EECCCCSSTTCEEEEE-ETTEEEEEEECCST-TSCCEEEEEEESCCHHHHHHHHHHTCSSCSSCHHHHHHH
T ss_pred ---------ccccccccCCceeEEc-cCCEEEEEEEEccC-CccCEEEecCCCcCHHHHHHHHHHHccCCCCCHHHHHHH
Confidence 3456678899999998 46999999999874 68999999999999999999999998 899999999999
Q ss_pred HHHHHHHHhh
Q 046070 290 IRSRDYLQKH 299 (309)
Q Consensus 290 ~~sr~~~r~~ 299 (309)
++||+.++..
T Consensus 218 ~lsr~~l~~~ 227 (237)
T 3goc_A 218 SLCRRALKEA 227 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 3
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=100.00 E-value=7.3e-72 Score=510.43 Aligned_cols=218 Identities=28% Similarity=0.488 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEE
Q 046070 53 NQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYS 132 (309)
Q Consensus 53 ~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~ 132 (309)
++|+++|++|+++++++|+++|.+.... ...++++|||||+||.+ ++.++||+||++|++++++++.++
T Consensus 4 ~~~~~~Q~~L~~~v~~~~~~~~~~~~~~---------~~~~~~~VaGvDvsy~~--~~~a~aa~Vvl~~~~~~~v~~~~~ 72 (225)
T 2w36_A 4 RQLHRWDLPPEEAIKVQNELRKKIKLTP---------YEGEPEYVAGVALSFPG--KEEGLAVIVVLEYPSFKILEVVSE 72 (225)
T ss_dssp CCCSCSCCCHHHHHHHHHHHGGGCCCCC---------CCSCCSEEEEEEEEEEE--TTEEEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhheeecccccccccccc---------ccCCccEEEEEEeeeeC--CCcEEEEEEEEECCCCcEEEEEEE
Confidence 4688999999999999987755432110 01468999999999986 358999999999999999999999
Q ss_pred EEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCc
Q 046070 133 LLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212 (309)
Q Consensus 133 ~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~ 212 (309)
.++++||||||||||||+|+++++|++|+.+ ||+|||||||++|||+||||||+|+++|+||||||||+|+ |
T Consensus 73 ~~~~~~PYIPG~LaFRE~P~~l~al~~L~~~-----PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK~~l~--G- 144 (225)
T 2w36_A 73 RGEITFPYIPGLLAFREGPLFLKAWEKLRTK-----PDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLY--G- 144 (225)
T ss_dssp EEECCSCCCTTCTHHHHHHHHHHHHTTCCSC-----CSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESSCSS--C-
T ss_pred EecccCCcccchHHHhhhHHHHHHHHhcCCC-----CCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEecccC--C-
Confidence 9999999999999999999999999999874 9999999999999999999999999999999999999998 4
Q ss_pred cccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC--CCCCChHHHHHHH
Q 046070 213 THSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQADI 290 (309)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~--~~RlPEPlR~Ad~ 290 (309)
.+.+++.++|++.+++ .+|+++|+++||+. ++||||||+||+||+++|+++|++|+ +||+|||||+||+
T Consensus 145 -------~~~~~~~~~g~~~~l~-~~ge~iG~~lRt~~-~~kPlyVS~Gh~i~l~~A~~~v~~~~~~~yRlPEP~R~Ad~ 215 (225)
T 2w36_A 145 -------TFKMPEDKRCSWSYLY-DGEEIIGCVIRTKE-GSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAHI 215 (225)
T ss_dssp -------BCCCCCSSSSCEEEEE-ETTEEEEEEECCST-TSCCEEEEECSSCCHHHHHHHHHHHCCTTCSSCHHHHHHHH
T ss_pred -------CcccccccCCceeEec-cCCEEEEEEEEcCC-CccCEEEeCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 2345667889999998 46999999999874 57999999999999999999999998 7999999999999
Q ss_pred HHHHHHHh
Q 046070 291 RSRDYLQK 298 (309)
Q Consensus 291 ~sr~~~r~ 298 (309)
+||++.++
T Consensus 216 ~s~~~~~~ 223 (225)
T 2w36_A 216 YTQRLKKG 223 (225)
T ss_dssp HHHHHTTC
T ss_pred HHHHhhhh
Confidence 99987554
No 4
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.1e-34 Score=257.76 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=127.2
Q ss_pred EEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEe
Q 046070 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175 (309)
Q Consensus 96 ~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVD 175 (309)
+|+|+|.||.+ +..++|+ |||+ ++.+++..+. .++ |||++||| .+++++++|+.+ | .||+||+|
T Consensus 8 rv~GiDds~~~--~~~~l~g-vv~~--~~~v~g~~~~--~~~---vdG~dat~---~i~~~~~~l~~~-p--~~~vvllD 71 (184)
T 2qh9_A 8 RFLGIDDSFDD--RKCCVVG-CVTC--GGYVEGFLYT--EID---IDGLDATD---KLISMVRRSKFR-E--QIKCIFLP 71 (184)
T ss_dssp EEEEEEEEECS--SCEEEEE-EEEE--TTEEEEEEEE--EEC---TTCSCHHH---HHHHHHTTCTTT-T--TEEEEEES
T ss_pred EEEEEEcccCC--CceEEEE-EEEE--CCEEEEEEEE--EEE---ECChhHHH---HHHHHHHhcCCC-C--CCcEEEEC
Confidence 79999999973 4567766 4888 6677655444 444 79999975 899999999864 1 14999999
Q ss_pred cccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEe---ecCCC
Q 046070 176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMR---STPDT 252 (309)
Q Consensus 176 G~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alr---t~~~~ 252 (309)
|+|++|||.+|+ +|+|+.+|+|||||||+....++++ +.++ +|.. ++..+.+++ ++ ..
T Consensus 72 G~g~agfn~~di-~~l~~~~~~P~I~V~~~~p~~~~~~-~al~-~~~~---------------~e~~~~~l~~~~~~-~~ 132 (184)
T 2qh9_A 72 GITLGGFNLVDI-QRVYRETKIPVVVVMRRKPDMEEFD-SAMR-NLEN---------------YELRRKIVEVAGEI-HR 132 (184)
T ss_dssp SSEETTTEECCH-HHHHHHHCCCEEEEESSCCCHHHHH-HHHT-TSTT---------------HHHHHHHHHHTCCC-EE
T ss_pred CEeeccCCEeCH-HHHHHhhCCCEEEEEEeCCCchhhh-hhhh-ccCC---------------CeEEEEEEEeCCCc-cC
Confidence 999999999999 7899999999999999987543332 2222 2221 222233344 22 34
Q ss_pred CccEEE-ecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHhh
Q 046070 253 LKPIFI-SVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYLQKH 299 (309)
Q Consensus 253 ~kPIyV-S~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~r~~ 299 (309)
.+|||| |+| ||+++|.+++++|+ +||+|||||+||++|+.+.+..
T Consensus 133 v~pvyV~s~G--i~l~~A~~iv~~~~~~~riPEPlR~Ahlia~~~~~~~ 179 (184)
T 2qh9_A 133 IGDIYIQTAG--LTPSEAEKLVKASLIKGNMPEPVRISHLVASAIIHGE 179 (184)
T ss_dssp ETTEEEEEES--SCHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHCC-
T ss_pred ceeEEEEECC--CCHHHHHHHHHHhcccCCCchhHHHHHHHHHhhhccc
Confidence 789999 655 99999999999998 7999999999999999976643
No 5
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=97.24 E-value=0.00023 Score=64.96 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=54.2
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
+.+|=++|+|-..+. .+||++||+.-.. .+--|..|.+..++-| --|-++||+ +.+-+.++..+.. ..||+|
T Consensus 14 p~rIE~fDiSh~~G~--~~V~smVvf~~g~p~k~~YR~f~i~~~~g~--DDya~m~Ev--l~RR~~r~~~e~~-~~PDLi 86 (226)
T 3c65_A 14 PRRIEAFDNSNIYGA--DPVSALVVFLDGKPAKKEYRKYKVKTVAGP--NDYETMREV--VRRRYTRVLKEGL-PLPDLI 86 (226)
T ss_dssp CSEEEEEEEEESSSS--SCEEEEEEEETTEECGGGCEEEECCCCCTT--CHHHHHHHH--HHHHHHHHHHHTC-CCCSEE
T ss_pred CCEEEEEECCccCCc--CceEEEEEEeCCccChhhCceeecCCCCCC--cHHHHHHHH--HHHHHhhhhcccC-CCCCEE
Confidence 578999999997653 4788999996531 1112333333322211 246677764 3445555443311 159999
Q ss_pred EEecccccCCCCCCchh-----hHhhhcCCeeEEEeCC
Q 046070 173 MVDGNGLLHPRGFGLAS-----HIGVLANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG~Gi~HPR~~GlAs-----HlGv~l~iPtIGVAKs 205 (309)
|||| |.. .+..|. -+| +++|+||+||.
T Consensus 87 liDG-Gkg---Ql~~a~~vl~~~lg--~~i~v~glaK~ 118 (226)
T 3c65_A 87 IIDG-GKG---HLSAVRDVLENELG--LDVPLAGLAKD 118 (226)
T ss_dssp EESS-CHH---HHHHHHHHHHHTSC--CCCCEEEC---
T ss_pred EEeC-CHH---HHHHHHHHHHHhcC--CCceEEEEEcC
Confidence 9998 221 112221 223 26999999995
No 6
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=97.16 E-value=0.00031 Score=61.04 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=47.4
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM 173 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil 173 (309)
+++|=++|+|-..+. .++|++||+.-. ++....|-.-++.-.-.--|-++||+ +.+-+.++ + .||+||
T Consensus 17 P~RIE~fDiSh~~G~--~~VasmVVf~~g--~p~K~~YRrf~I~~~g~DDya~M~Ev--l~RR~~r~--~----~PDLil 84 (159)
T 2nrr_A 17 PYRIEGIDISHLQGK--YTVASLVVFEDG--FPKKGDYRRYKIEQDHPDDYESIRTV--VKRRYSKH--P----LPNLLF 84 (159)
T ss_dssp CCEEEEEEEECC-----CCEEEEEEEETT--EECGGGCEEEEC-----CHHHHHHHH--HHHHHTTS--C----CCSEEE
T ss_pred CCEEEEEECCccCCc--cceEEEEEEeCC--ccChhhCceeecCCCCCCHHHHHHHH--HHHHhccC--C----CCCEEE
Confidence 578999999987653 478899999653 22222222223322001234444442 22222222 1 599999
Q ss_pred Eec-ccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070 174 VDG-NGLLHPRGFGLAS----HIGVLANLTTIGVGKN 205 (309)
Q Consensus 174 VDG-~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs 205 (309)
||| -|-+ +.|. -+| +++|.||+||.
T Consensus 85 IDGGkgQl-----~aA~~vl~elg--~~i~v~glAK~ 114 (159)
T 2nrr_A 85 VDGGIGQV-----NAAIEALKEIG--KDCPVVGLAKK 114 (159)
T ss_dssp ESSCHHHH-----HHHHHHHHHTT--CCCCEEEEC--
T ss_pred EeCCHHHH-----HHHHHHHHHcC--CCccEEEEEcC
Confidence 998 2222 2221 223 26999999996
No 7
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=97.06 E-value=0.00077 Score=61.28 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=52.5
Q ss_pred ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070 94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172 (309)
Q Consensus 94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi 172 (309)
+.+|=++|+|-..+ ..+||++||++-.. .+--|..|.+.. +- .--|-++||+ +.+-+.++ + .||+|
T Consensus 22 p~rIE~fDiSh~~G--~~~V~smVvf~~g~p~k~~YRrf~i~~-~g--~DDya~m~Ev--l~RR~~r~--~----~PDLi 88 (220)
T 2nrt_A 22 PYRIEGIDISHLQG--KYTVASLVVFEDGFPKKGDYRRYKIEQ-DH--PDDYESIRTV--VKRRYSKH--P----LPNLL 88 (220)
T ss_dssp CCEEEEEEEEEETT--TEEEEEEEEEETTEECGGGCEEEEEEC-SS--CCHHHHHHHH--HHHHHTTS--C----CCSEE
T ss_pred CCEEEEEECCccCC--ccceEEEEEEeCCccChhhCceeeCCC-CC--CCHHHHHHHH--HHHHhccC--C----CCCEE
Confidence 57899999999865 46889999996531 111233333322 11 1235555543 22222222 1 59999
Q ss_pred EEec-ccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070 173 MVDG-NGLLHPRGFGLAS----HIGVLANLTTIGVGKN 205 (309)
Q Consensus 173 lVDG-~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs 205 (309)
|||| -|-+ ..|. -+| +++|+||+||.
T Consensus 89 liDGGkgQl-----~~a~~vl~~lg--~~i~v~glaK~ 119 (220)
T 2nrt_A 89 FVDGGIGQV-----NAAIEALKEIG--KDCPVVGLAKK 119 (220)
T ss_dssp EESSSHHHH-----HHHHHHHHHTT--CCCCEEEECTT
T ss_pred EEeCCHHHH-----HHHHHHHHHcC--CCCeEEEEECC
Confidence 9998 2222 2222 223 36999999995
No 8
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=78.02 E-value=65 Score=33.95 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCCccEEEec-----CCCCC----HHHHHHHHHHcC-------C--CCCChHHHHHHHHHHHHHHh
Q 046070 250 PDTLKPIFISV-----GHCIS----LDTAVMIVKMTC-------K--YRVPEPIRQADIRSRDYLQK 298 (309)
Q Consensus 250 ~~~~kPIyVS~-----Gh~is----LetA~~iv~~~~-------~--~RlPEPlR~Ad~~sr~~~r~ 298 (309)
.+..+|+.+.. -...+ +++-..++.++| + -|+|-|++.||++|..+.+.
T Consensus 689 qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~ 755 (771)
T 1u04_A 689 KGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNE 755 (771)
T ss_dssp CSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhh
Confidence 35568887721 12333 666666665532 2 57999999999999977664
No 9
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=64.99 E-value=48 Score=34.41 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCCccEEEe-cCCCCCHHHHHHHHHHcCC--------CCCChHHHHHHHHHHHHHHh
Q 046070 251 DTLKPIFIS-VGHCISLDTAVMIVKMTCK--------YRVPEPIRQADIRSRDYLQK 298 (309)
Q Consensus 251 ~~~kPIyVS-~Gh~isLetA~~iv~~~~~--------~RlPEPlR~Ad~~sr~~~r~ 298 (309)
+..+|+-+. .=+--++++-.+++..+|+ -++|-|++.||++|....+.
T Consensus 636 GT~rPthY~vv~~D~~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~ 692 (706)
T 1yvu_A 636 GTHQPIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRG 692 (706)
T ss_dssp TCCCCEEEEEEECSSCHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTC
T ss_pred CCCCCEEEEEEeCCCCHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhc
Confidence 467887766 2122277777777766541 57999999999999977653
No 10
>2ygk_A NURA; hydrolase, DNA repair, replication; HET: MSE; 2.50A {Sulfolobus solfataricus}
Probab=61.14 E-value=19 Score=34.09 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=26.8
Q ss_pred EEeecCCCCccEEEe-cCCCCCHHHHHHHHHHc---CCCCCChHHHHHHHHHH
Q 046070 245 AMRSTPDTLKPIFIS-VGHCISLDTAVMIVKMT---CKYRVPEPIRQADIRSR 293 (309)
Q Consensus 245 alrt~~~~~kPIyVS-~Gh~isLetA~~iv~~~---~~~RlPEPlR~Ad~~sr 293 (309)
.+|..+ +..++=|. +|+ ++.+...+++..+ +..-.|-|+..||..+|
T Consensus 260 y~Rl~~-~~~vlriev~~~-~~~~~i~~il~~L~~~s~~GYPypL~~ad~~Vk 310 (339)
T 2ygk_A 260 YTRLDN-GKRVIRVDIVGR-VDEKIVKEIMDRLSGVSIKGYPFPLLKAHMDVR 310 (339)
T ss_dssp EEESST-TSCCEEEEEESC-CCHHHHHHHHHHHHTTEETTEEHHHHHHHHHHC
T ss_pred EEEECC-CCCeEEEEecCc-CCHHHHHHHHHHHHHhCCCCcChhHHHhhhccE
Confidence 345432 33444444 333 5666654454433 33569999999998665
No 11
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=56.23 E-value=26 Score=31.25 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCcEEEEecccccC-C-CCCCchhhHhhhcCCeeEEEeCCcc
Q 046070 150 APVLLSLLDNMKKRANHFYPQVLMVDGNGLLH-P-RGFGLASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 150 ~P~il~al~kL~~~~p~~~PdvilVDG~Gi~H-P-R~~GlAsHlGv~l~iPtIGVAKs~L 207 (309)
...+.++++++... .|+++|||-|-+. | ........+-..++.|+|=|+...+
T Consensus 118 ~~~I~~~~~~l~~~-----~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~l 172 (242)
T 3qxc_A 118 TDNLTQRLHNFTKT-----YDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNL 172 (242)
T ss_dssp HHHHHHHHHHGGGT-----CSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCST
T ss_pred HHHHHHHHHHHHhc-----CCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCC
Confidence 35688888888765 7999999997443 4 2334566777788999999988765
No 12
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=43.91 E-value=29 Score=30.32 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=38.4
Q ss_pred HHHHHHHHH-HHhhcCCCCCcEEEEecccccC-CCC-CCchhhHhhhcCCeeEEEeCCcc
Q 046070 151 PVLLSLLDN-MKKRANHFYPQVLMVDGNGLLH-PRG-FGLASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 151 P~il~al~k-L~~~~p~~~PdvilVDG~Gi~H-PR~-~GlAsHlGv~l~iPtIGVAKs~L 207 (309)
..+.+++++ +... .|+++|||-|-+. |-. -....++-..++.|+|=|+...+
T Consensus 97 ~~i~~~~~~~l~~~-----~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~ 151 (228)
T 3of5_A 97 ENLKQFIEDKYNQD-----LDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKV 151 (228)
T ss_dssp HHHHHHHHGGGGSS-----CSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECST
T ss_pred HHHHHHHHHHHHcc-----CCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCc
Confidence 567777877 6654 7999999997543 422 34567777788999999987765
No 13
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=42.41 E-value=1e+02 Score=30.20 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=46.2
Q ss_pred cEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCC---CCccccccch----HHHHHHHHHHHhhcCCC
Q 046070 95 KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPY---VPGFLAFREA----PVLLSLLDNMKKRANHF 167 (309)
Q Consensus 95 ~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PY---IPG~LAFRE~----P~il~al~kL~~~~p~~ 167 (309)
.+|.|||.|..+ .+ + .+++-. .+++... ......+| +|-.-++.=. |.+-++++++.-.
T Consensus 6 m~iL~i~ts~~~----~~--~-al~~~~-~~~~~~~--~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~~~~~---- 71 (540)
T 3en9_A 6 MICLGLEGTAEK----TG--V-GIVTSD-GEVLFNK--TIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKN---- 71 (540)
T ss_dssp CEEEEEECSSSE----EE--E-EEEETT-SCEEEEE--EEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGG----
T ss_pred ceEEEEEcCccc----eE--E-EEEECC-CeEEEEE--EEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCHh----
Confidence 579999998753 22 2 334422 2455432 23445455 2333223222 4444455543222
Q ss_pred CCcEEEEec-ccccCCCCCCc--hhhHhhhcCCeeEEE
Q 046070 168 YPQVLMVDG-NGLLHPRGFGL--ASHIGVLANLTTIGV 202 (309)
Q Consensus 168 ~PdvilVDG-~Gi~HPR~~Gl--AsHlGv~l~iPtIGV 202 (309)
++|.|-|+- -|..-.-+.|+ |.-|...+++|.|||
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~v 109 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGV 109 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeEe
Confidence 378887752 22211112222 233555779999999
No 14
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=40.20 E-value=30 Score=31.19 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhhcCCC-----CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 149 EAPVLLSLLDNMKKRANHF-----YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 149 E~P~il~al~kL~~~~p~~-----~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
|.-.+.+-+++|......+ .||+|+|= .|+.=-+|-+=...+||||||+.=+
T Consensus 133 e~~~~~r~~~kl~k~lgGik~m~~~Pdll~v~-----Dp~~e~~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 133 DAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIV-----DQQEEYTALRECITLGIPTICLIDT 189 (231)
T ss_dssp HHHHHHHHHHHHTTSTTSTTSCCSCCSEEEES-----CTTTTHHHHHHHHTTTCCEEECCCS
T ss_pred HHHHHHHHHHHHHHhhhcccccccCCCEEEEe-----CCccccHHHHHHHHhCCCEEEEecC
Confidence 3334444555554322111 49998864 4766667777667889999999543
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=40.03 E-value=39 Score=30.36 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=21.4
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
+||+|++|+.. ..+..+...+|+|+|.+.
T Consensus 107 ~pD~Vi~~~~~-------~~~~~~a~~~giP~v~~~ 135 (384)
T 2p6p_A 107 RPDLIVGGTMS-------YVAPLLALHLGVPHARQT 135 (384)
T ss_dssp CCSEEEEETTC-------THHHHHHHHHTCCEEEEC
T ss_pred CCcEEEECcch-------hhHHHHHHhcCCCEEEec
Confidence 59999999752 234455667899999885
No 16
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=38.80 E-value=23 Score=32.50 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.||+|+| ..|+.=-+|-+=...+||||||+.=+
T Consensus 158 ~Pdll~V-----~Dp~~e~~Ai~EA~~l~IPvIaivDT 190 (256)
T 2vqe_B 158 LPDAIFV-----VDPTKEAIAVREARKLFIPVIALADT 190 (256)
T ss_dssp CCSEEEE-----SCTTTTHHHHHHHHHTTCCCEECCCT
T ss_pred CCCEEEE-----eCCccchHHHHHHHHcCCCEEEEecC
Confidence 5999886 44666556666666889999999544
No 17
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=36.55 E-value=14 Score=33.01 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=6.8
Q ss_pred ccCcchhhhhhhhhhhhhhhHHHHHhcCCCChhHHHHHHHHHHHHHHHHh
Q 046070 15 FHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKK 64 (309)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~L~~ 64 (309)
-+.++|+.+.+|++|| ++|+.+-.-+.+..+........+.+.=.+|++
T Consensus 17 ~~~LLe~i~~~YddY~-~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~q 65 (204)
T 2jqq_A 17 VQTLLEQIRSNYDDYL-TFSNTYTDEENETLINLEKTQSDLQKFMTQLDH 65 (204)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHH-HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999 589888775555555444444444444444444
No 18
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=34.88 E-value=47 Score=30.79 Aligned_cols=41 Identities=7% Similarity=0.049 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 152 VLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 152 ~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
.+.++++.++.. +||+|+.|+.. ..+..+...+|+|+|.+.
T Consensus 132 ~~~~l~~~~~~~----~pDlVv~d~~~-------~~~~~aA~~lgiP~v~~~ 172 (441)
T 2yjn_A 132 LIEGMVSFCRKW----RPDLVIWEPLT-------FAAPIAAAVTGTPHARLL 172 (441)
T ss_dssp HHHHHHHHHHHH----CCSEEEECTTC-------THHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHhc----CCCEEEecCcc-------hhHHHHHHHcCCCEEEEe
Confidence 344444444433 59999999832 356677778999999985
No 19
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=31.58 E-value=62 Score=33.67 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCCccEEEecC-CCCCHHHHHHHHHHcCC---------CCCChHHHHHHHHHHHHHHhhcchhhhhhc
Q 046070 251 DTLKPIFISVG-HCISLDTAVMIVKMTCK---------YRVPEPIRQADIRSRDYLQKHQSTCLLQRW 308 (309)
Q Consensus 251 ~~~kPIyVS~G-h~isLetA~~iv~~~~~---------~RlPEPlR~Ad~~sr~~~r~~~~~~~~~~~ 308 (309)
+..+|+.+.-- +..++++-..++.++|+ -|+|-|++.||++|++..|--+. .+|++
T Consensus 612 GT~rPthy~~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~~~r~g~~--~~~~~ 677 (685)
T 3ho1_A 612 GTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIR--HLKEV 677 (685)
T ss_dssp SCCCCEEEEEEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHHHHHTTCS--CCCSS
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChHHHHHHHHHHHHHHhccc--ccccc
Confidence 46788876531 35689998888877541 46999999999999988875443 44443
No 20
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=31.23 E-value=47 Score=29.70 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCcEEEEecccccC-C-CCC-CchhhHhhhcCCeeEEEeCCcc
Q 046070 150 APVLLSLLDNMKKRANHFYPQVLMVDGNGLLH-P-RGF-GLASHIGVLANLTTIGVGKNLH 207 (309)
Q Consensus 150 ~P~il~al~kL~~~~p~~~PdvilVDG~Gi~H-P-R~~-GlAsHlGv~l~iPtIGVAKs~L 207 (309)
...+.++++++... .|+++|||-|-+. | ..- .....+-..++.|+|=|+...+
T Consensus 113 ~~~i~~~~~~l~~~-----~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~ 168 (251)
T 3fgn_A 113 RDQIVRLIADLDRP-----GRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADL 168 (251)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSST
T ss_pred HHHHHHHHHHHHhc-----CCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCC
Confidence 35677788877654 7999999997443 3 122 3556677788999999987765
No 21
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=30.71 E-value=46 Score=30.22 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=21.6
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
.||+|++|....+ |..+...+++|+|.+.
T Consensus 130 ~pDlVv~d~~~~~-------~~~aA~~~giP~v~~~ 158 (398)
T 3oti_A 130 RPDLVVYEQGATV-------GLLAADRAGVPAVQRN 158 (398)
T ss_dssp CCSEEEEETTCHH-------HHHHHHHHTCCEEEEC
T ss_pred CCCEEEECchhhH-------HHHHHHHcCCCEEEEe
Confidence 4999999854443 4566678999999875
No 22
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=27.74 E-value=1.3e+02 Score=27.50 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=44.8
Q ss_pred EEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccc----cccch----HHHHHHHHHHHhhcCCC
Q 046070 96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFL----AFREA----PVLLSLLDNMKKRANHF 167 (309)
Q Consensus 96 ~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~L----AFRE~----P~il~al~kL~~~~p~~ 167 (309)
+|.|||.|... . ++++++-. +++.. .....+-+|= |.. +++=. |.+-+++++..... -
T Consensus 2 ~iLgIdts~~~----~---~val~~~g--~i~~~--~~~~~~~~~g-g~~p~~~~~~h~~~l~~~i~~~L~~agi~~--~ 67 (330)
T 2ivn_A 2 LALGIEGTAHT----L---GIGIVSED--KVLAN--VFDTLTTEKG-GIHPKEAAEHHARLMKPLLRKALSEAGVSL--D 67 (330)
T ss_dssp CEEEEECSSSE----E---EEEEECSS--CEEEE--EEEECCCTTC-CCCHHHHHHHHHHHHHHHHHHHHHHHTCCT--T
T ss_pred EEEEEEccCCC----e---EEEEEECC--EEEEE--EEEEeecccC-CcCchhhHHHHHHHHHHHHHHHHHHcCCCH--H
Confidence 47899998742 1 23445433 56643 2223334552 322 11111 44555555543221 1
Q ss_pred CCcEEEEe-cccccCCCCCC--chhhHhhhcCCeeEEE
Q 046070 168 YPQVLMVD-GNGLLHPRGFG--LASHIGVLANLTTIGV 202 (309)
Q Consensus 168 ~PdvilVD-G~Gi~HPR~~G--lAsHlGv~l~iPtIGV 202 (309)
++|.|.|. |-|..--=+.| .|.-+...+++|.++|
T Consensus 68 did~Ia~~~GPG~~~~lrvg~~~ak~la~~~~~pl~~v 105 (330)
T 2ivn_A 68 DIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGV 105 (330)
T ss_dssp TCCEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HCcEEEEECCCCchHHHHHHHHHHHHHHHHcCCCEEee
Confidence 36788773 54421000112 2444556779999999
No 23
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=27.43 E-value=74 Score=28.77 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=21.7
Q ss_pred CCCcEEEEec-ccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 167 FYPQVLMVDG-NGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 167 ~~PdvilVDG-~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
.+||+|++|+ .+.. +..+...+|+|+|.+.
T Consensus 117 ~~PDlVi~d~~~~~~-------~~~aA~~~giP~v~~~ 147 (415)
T 3rsc_A 117 DVPDLVLYDDFPFIA-------GQLLAARWRRPAVRLS 147 (415)
T ss_dssp SCCSEEEEESTTHHH-------HHHHHHHTTCCEEEEE
T ss_pred cCCCEEEECchhhhH-------HHHHHHHhCCCEEEEE
Confidence 4699999995 2222 4455667899999986
No 24
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=27.12 E-value=78 Score=28.56 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGK 204 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAK 204 (309)
.||+|+.|..+.+ +..+...+++|+|.+.=
T Consensus 123 ~pDlVv~d~~~~~-------~~~~a~~~giP~v~~~~ 152 (398)
T 4fzr_A 123 KPDLVLTETYSLT-------GPLVAATLGIPWIEQSI 152 (398)
T ss_dssp CCSEEEEETTCTH-------HHHHHHHHTCCEEEECC
T ss_pred CCCEEEECccccH-------HHHHHHhhCCCEEEecc
Confidence 5999998863333 45555678999998753
No 25
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=26.21 E-value=79 Score=28.33 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=21.1
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.||+|++|..+.+ +......+|+|+|.+.-.
T Consensus 114 ~PD~Vv~~~~~~~-------~~~aa~~~giP~v~~~~~ 144 (391)
T 3tsa_A 114 RPSVLLVDVCALI-------GRVLGGLLDLPVVLHRWG 144 (391)
T ss_dssp CCSEEEEETTCHH-------HHHHHHHTTCCEEEECCS
T ss_pred CCCEEEeCcchhH-------HHHHHHHhCCCEEEEecC
Confidence 5999999943222 334556789999998533
No 26
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=25.99 E-value=75 Score=28.21 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 149 EAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 149 E~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
-.|.++++++++... ..|.|+|--|+ +| ++ -.+-..+++|+||+.
T Consensus 54 a~~~l~~~~~~l~~~----g~d~iviaCnt-~~----~l-~~lr~~~~iPvigi~ 98 (245)
T 3qvl_A 54 AAVGVLEQIRAGREQ----GVDGHVIASFG-DP----GL-LAARELAQGPVIGIA 98 (245)
T ss_dssp HHHHHHHHHHHHHHH----TCSEEEEC-CC-CT----TH-HHHHHHCSSCEEEHH
T ss_pred HHHHHHHHHHHHHHC----CCCEEEEeCCC-hh----HH-HHHHHHcCCCEECcc
Confidence 367888888888654 38999999887 45 34 455557799999984
No 27
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Probab=25.56 E-value=50 Score=30.20 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEecccc
Q 046070 153 LLSLLDNMKKRANHFYPQVLMVDGNGL 179 (309)
Q Consensus 153 il~al~kL~~~~p~~~PdvilVDG~Gi 179 (309)
|.++++.|.. .|+.++|||++.
T Consensus 102 m~rAi~~L~~-----~p~~vlVDg~~~ 123 (250)
T 2etj_A 102 MNRALENLSV-----KPSFVLVDGKGI 123 (250)
T ss_dssp HHHHHHHSSS-----CCSEEEEESSSC
T ss_pred HHHHHHhcCC-----CCCEEEECCCCC
Confidence 4456666653 489999999976
No 28
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=24.63 E-value=85 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
+||+|+.|+.... +..+...+++|+|-+.-+
T Consensus 130 ~pDvVv~~~~~~~-------~~~aa~~~giP~v~~~~~ 160 (412)
T 3otg_A 130 RPDLVVQEISNYG-------AGLAALKAGIPTICHGVG 160 (412)
T ss_dssp CCSEEEEETTCHH-------HHHHHHHHTCCEEEECCS
T ss_pred CCCEEEECchhhH-------HHHHHHHcCCCEEEeccc
Confidence 5999999964432 334556789999987544
No 29
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=24.44 E-value=90 Score=27.77 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=21.6
Q ss_pred CCCcEEEEec-ccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 167 FYPQVLMVDG-NGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 167 ~~PdvilVDG-~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
.+||+|++|+ ... .+..+...+|+|+|.+.
T Consensus 101 ~~pD~Vi~d~~~~~-------~~~~aA~~~giP~v~~~ 131 (402)
T 3ia7_A 101 NPPDLVVYDVFPFI-------AGRLLAARWDRPAVRLT 131 (402)
T ss_dssp CCCSEEEEESTTHH-------HHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEECchHHH-------HHHHHHHhhCCCEEEEe
Confidence 3699999995 222 24555667899999986
No 30
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.39 E-value=72 Score=19.26 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 046070 47 AAQAQLNQWTEIQDELKK 64 (309)
Q Consensus 47 ~~~~~~~~~~~~Q~~L~~ 64 (309)
++++..+++..+|.+|++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 345677888888887765
No 31
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=24.23 E-value=99 Score=28.13 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCC
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKN 205 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs 205 (309)
.||+|++|..+. .+..+...+|+|+|.+.-+
T Consensus 104 ~pD~Vi~d~~~~-------~~~~~A~~~giP~v~~~~~ 134 (430)
T 2iyf_A 104 IPDLVLHDITSY-------PARVLARRWGVPAVSLSPN 134 (430)
T ss_dssp CCSEEEEETTCH-------HHHHHHHHHTCCEEEEESS
T ss_pred CCCEEEECCccH-------HHHHHHHHcCCCEEEEecc
Confidence 699999996532 3445556789999998633
No 32
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=23.75 E-value=1.8e+02 Score=24.59 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=38.6
Q ss_pred eccCCCCccccc---c--chHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEE
Q 046070 136 LQVPYVPGFLAF---R--EAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGV 202 (309)
Q Consensus 136 ~~~PYIPG~LAF---R--E~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGV 202 (309)
..+||-+-...- + ..|.++++++.|... .+|+|++-.|+- .|+. .+-..+++|.||+
T Consensus 42 ~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~----g~d~iviaCnta-----~~~~-~l~~~~~iPvi~i 103 (228)
T 2eq5_A 42 RCIEDQPKGIYNEETEREAEPKIIRLAKEFERE----GVDAIIISCAAD-----PAVE-KVRKLLSIPVIGA 103 (228)
T ss_dssp EECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHT----TCSEEEECSTTC-----TTHH-HHHHHCSSCEEEH
T ss_pred EeCCCCchhccccccHHHhHHHHHHHHHHHHHC----CCCEEEEeCCch-----HHHH-HHHHhCCCCEeCc
Confidence 678887665422 1 235777878777654 489999999876 3432 3445679999996
No 33
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.66 E-value=98 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHHhh
Q 046070 37 EREALASPDPAAQAQLNQWTEIQDELKKR 65 (309)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~Q~~L~~~ 65 (309)
+++..+.-+-.....+.+++++|+.||+.
T Consensus 46 ~~E~~~~~~t~lSs~LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 46 EKENIIDIDTNLSSSISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHSSSCCCTTHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccccccchHHHHHHHHHHHHhhcCC
Confidence 34456655666667999999999999984
No 34
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=23.63 E-value=2.8e+02 Score=24.64 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=42.7
Q ss_pred cccEEEEEeeeeecCCCCeEEEEEEEEeCCCc--eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCc
Q 046070 93 LLKYIGGVDMSFSKEDPSIACGCIVVLDLQTL--QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170 (309)
Q Consensus 93 ~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l--~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pd 170 (309)
.-++|.|+|++=..++ + ..+++|++..+. ++|.. +. .-..+|. +.|-++. .|.... .+.
T Consensus 58 ~~~YvigvD~A~g~~~-D--ySv~~V~d~t~~p~~~Va~-~r--~n~i~~~-------~la~~V~---~l~~~y---n~a 118 (232)
T 3c6a_A 58 GRKYVATLDCSEGRGQ-D--YHALQIIDITEFPYKQVAV-YH--SNTTSHF-------ILPDIVF---KYLMMY---NEC 118 (232)
T ss_dssp TCCEEEEEECCCSSSS-C--CEEEEEEECSSSSEEEEEE-EE--ESCCCTT-------THHHHHH---HHHHHT---TSC
T ss_pred CCeEEEEEEcCCCCCC-C--CcEEEEEEecCCcceEEEE-ee--cCccCHH-------HHHHHHH---HHHHHh---CCC
Confidence 5689999999964433 2 235677777542 44431 11 1113322 2333333 333322 378
Q ss_pred EEEEecccccCCCCCCchhhHhhhcC
Q 046070 171 VLMVDGNGLLHPRGFGLASHIGVLAN 196 (309)
Q Consensus 171 vilVDG~Gi~HPR~~GlAsHlGv~l~ 196 (309)
.|+||-+|.-+ .++.-|--.++
T Consensus 119 ~v~VE~ns~G~----~vi~~L~~~~~ 140 (232)
T 3c6a_A 119 PVYIELNSTGV----SIAKSLAMDLE 140 (232)
T ss_dssp CEEEBCSHHHH----HHHHHHHHTSC
T ss_pred EEEEeeCCChH----HHHHHHHHhcC
Confidence 99999777533 45555533333
No 35
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=22.75 E-value=1.3e+02 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEe
Q 046070 168 YPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVG 203 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVA 203 (309)
.||+|+.|..- ..+..+...+|+|+|.+.
T Consensus 109 ~pD~VI~d~~~-------~~~~~~A~~lgIP~v~~~ 137 (424)
T 2iya_A 109 RPDLIVYDIAS-------WPAPVLGRKWDIPFVQLS 137 (424)
T ss_dssp CCSEEEEETTC-------THHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEcCcc-------cHHHHHHHhcCCCEEEEe
Confidence 59999999752 345666677899999986
No 36
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=22.53 E-value=57 Score=29.90 Aligned_cols=34 Identities=6% Similarity=-0.148 Sum_probs=23.1
Q ss_pred CCcEEEEecccccCCCCCCc-hhhHhhhcCCeeEEEeCCc
Q 046070 168 YPQVLMVDGNGLLHPRGFGL-ASHIGVLANLTTIGVGKNL 206 (309)
Q Consensus 168 ~PdvilVDG~Gi~HPR~~Gl-AsHlGv~l~iPtIGVAKs~ 206 (309)
.||+|++|+.. . +++ +..+...+|+|+|.+.=+.
T Consensus 94 ~pD~vi~d~~~-~----~~~~~~~~A~~~giP~v~~~~~~ 128 (416)
T 1rrv_A 94 GCAAVVAVGDL-A----AATGVRSVAEKLGLPFFYSVPSP 128 (416)
T ss_dssp TCSEEEEEECH-H----HHHHHHHHHHHHTCCEEEEESSG
T ss_pred CCCEEEEcCch-H----HHHHHHHHHHHcCCCEEEEeCCC
Confidence 59999999831 1 121 4556667899999886553
No 37
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=21.27 E-value=76 Score=27.78 Aligned_cols=54 Identities=26% Similarity=0.480 Sum_probs=30.4
Q ss_pred ccCCCCccccccchHH-HHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHh----hhcCCeeEEEe
Q 046070 137 QVPYVPGFLAFREAPV-LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIG----VLANLTTIGVG 203 (309)
Q Consensus 137 ~~PYIPG~LAFRE~P~-il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlG----v~l~iPtIGVA 203 (309)
.+||.=+..+--=+|- +.+..+....+ ..+||+. ..|.|.||. -.+.+|+|||=
T Consensus 49 gI~~e~~V~SAHRtp~~l~~~~~~a~~~----g~~ViIa---------~AG~aahLpGvvAa~T~~PVIGVP 107 (181)
T 4b4k_A 49 NIPYEKKVVSAHRTPDYMFEYAETARER----GLKVIIA---------GAGGAAHLPGMVAAKTNLPVIGVP 107 (181)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTT----TCCEEEE---------EECSSCCHHHHHHTTCCSCEEEEE
T ss_pred CCCeeEEEEccccChHHHHHHHHHHHhc----CceEEEE---------eccccccchhhHHhcCCCCEEEEe
Confidence 3444444444333444 44444444433 3677765 445566654 47899999993
No 38
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=20.90 E-value=44 Score=29.46 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEecccc
Q 046070 151 PVLLSLLDNMKKRANHFYPQVLMVDGNGL 179 (309)
Q Consensus 151 P~il~al~kL~~~~p~~~PdvilVDG~Gi 179 (309)
-++.++++.|.. .|+.++|||++.
T Consensus 86 ~a~~~ai~~l~~-----~p~~vlvD~~~~ 109 (213)
T 1io2_A 86 ENFAKALNSLKV-----KPDVIYADAADV 109 (213)
T ss_dssp HHHHHHHHHCSS-----CCSEEEEECCSS
T ss_pred HHHHHHHHhccc-----cCCEEEECCCCC
Confidence 456667777765 389999999974
Done!