BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046072
(791 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/553 (42%), Positives = 346/553 (62%), Gaps = 47/553 (8%)
Query: 182 YDPASITAYWGKRPRAVATRIVQLLSVAGGFLSRIAWDIVTKKIKENEVARAIELRDIVT 241
Y P I ++ KRP V R++ +L F+ I W+ + K A+AI+LR+++T
Sbjct: 53 YHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLRGKDPTVSRAKAIQLRELLT 112
Query: 242 SLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQPWQEIYS 301
+LGP YIK+GQALS RPD++ PV + EL L D++PSFP++VA I+EELG P +EIY+
Sbjct: 113 NLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYA 172
Query: 302 ELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIRNLGL-ALRKFPQ 360
ELS PIAAASLGQVYKG+LK G+ VAVKVQRP ++ +T+D++I+R+L L A R +
Sbjct: 173 ELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRSVKR 231
Query: 361 VSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLTT 420
+ D+V + DE A+R FEE++Y E NG FA++ + LP++ +P Y +YT R+VLT
Sbjct: 232 LRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGS-LPEIYVPSIYWQYTGRRVLTM 290
Query: 421 GWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLA 475
W+EG KL+ Q+ D LV VGV C L+QLL+ GFFHADPHPGNL+ DG+LA
Sbjct: 291 EWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLA 350
Query: 476 ILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKVF 535
LDFG+++ + Q+YG+IEA+ HL++RD++++ KD+VKLDF+ +L+PI+P L +VF
Sbjct: 351 YLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVF 410
Query: 536 DQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAIV 595
AL G NF+ + ++ + +++PFR+P Y+ALIIR++ LEGIA+ + +F ++
Sbjct: 411 GNAL-GASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVL 469
Query: 596 DEAYPYIAQRLLTDESPRLRNALRYTIYGKSGVFDAERFIDIMQAFENFITAAKSGGGEG 655
+AYPYIA+RLLTD+S LR +L+ ++ K G F R EN + AK+ G
Sbjct: 470 SKAYPYIAKRLLTDQSEELRTSLKELLF-KEGSFRWNR-------LENLLRNAKNSPGFD 521
Query: 656 LNGHMAELGILQSQTGYIIPVLSSSGSQPTQQIQTRAALAFLLSDKGSLFREFLLDEIVK 715
+ + E A FLLSD+G R+ L+ E+V
Sbjct: 522 FDYVLNE------------------------------ATEFLLSDRGQFIRDRLVAELVN 551
Query: 716 GIDAVTREQLVQI 728
ID + R Q+
Sbjct: 552 SIDQLGRNTWQQV 564
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/465 (43%), Positives = 299/465 (64%), Gaps = 9/465 (1%)
Query: 181 VYDPASITAYWGKRPRAVATRIVQLLSVAGGFLSRIAWDIVTKKIKENEVARAIELRDIV 240
+Y P I G +P R +++L GGF ++ D +++N RAIELR I
Sbjct: 95 IYSPELIARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRRIF 154
Query: 241 TSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQPWQEIY 300
T LGP ++KLGQ LS RPD+ P + EL +L D +P+FPD A A I+ EL + I+
Sbjct: 155 TRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIF 214
Query: 301 SELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIRNLGLALRKFPQ 360
S +S PIAAASLGQVYK +L+ +G +VAVKVQRP + E + +D ++IR +G + K+
Sbjct: 215 SSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVD 274
Query: 361 -VSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLT 419
++ DV+ L+DE+A R ++EL+YV E +N F ++ D V++P + YTSRKVLT
Sbjct: 275 FITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLY-ADKADVLVPDIFWDYTSRKVLT 333
Query: 420 TGWIEGEKLSQ--STESD---VGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKL 474
W+EG KL++ + ES V +LVN G+ C L+QLL+ GFFHADPHPGNL+ TPDGKL
Sbjct: 334 MEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKL 393
Query: 475 AILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKV 534
A LDFG++++ ++ ++ +I + HL++RDYEA+ +D+ L F+ V++ PI+P L
Sbjct: 394 AFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDF 453
Query: 535 FDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAI 594
FD AL NF+ L L + + YPF +PPY+ALI+R++ VLEG+AL + +F +
Sbjct: 454 FDDAL-NYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKV 512
Query: 595 VDEAYPYIAQRLLTDESPRLRNALRYTIYGKSGVFDAERFIDIMQ 639
+ +YPY A+RLLTD +P LR+AL ++ K G F R +++Q
Sbjct: 513 LAASYPYFAKRLLTDPNPYLRDALIELLF-KDGKFRWNRLENLLQ 556
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/550 (37%), Positives = 324/550 (58%), Gaps = 39/550 (7%)
Query: 170 EVDESSEFLPLVYDPASITAYWGKRPRAVATRIVQLLSVAGGFLSRIAWDIVTKKIKENE 229
E D SE Y+ I + K+P + R+ Q+ + + D ++ +
Sbjct: 62 EADSLSE-----YNFPRIDGMYKKKPLILLRRLAQIGTTFSYWFGLRLADEALERSDQMF 116
Query: 230 VARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIK 289
RA ELR ++ LGPAY+K+ QA+S RPD++ P+ + EL L D++ F +VA +I+
Sbjct: 117 KVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIE 176
Query: 290 EELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIR 349
+ELG P E++SE+S P+AAASLGQVY+ RL+ +G +VAVKVQRP V + +D I+R
Sbjct: 177 DELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILR 236
Query: 350 NLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIPKTY 409
+ ++K + + D+ +VDEWA F+E+DY+NE +NG F ++ + V++PK Y
Sbjct: 237 YIAGLIKKAGRFNSDLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLYG-GIKDVLVPKMY 295
Query: 410 EKYTSRKVLTTGWIEGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRT 469
+Y++ KVL W+EG+KL++ + LV VGV C QLL+ GF+HADPHPGN +RT
Sbjct: 296 TEYSTSKVLVMEWVEGQKLNEVNDL---YLVEVGVYCSFNQLLEYGFYHADPHPGNFLRT 352
Query: 470 PDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILP 529
DG+LA LDFG++ + + G +EA HL++RD++A+ KDFV L +P +
Sbjct: 353 YDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTK 412
Query: 530 VLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGN 589
L VF A+ G +N +F +L DL + + + FRIPPYF+L+IR++ VLEGIA+ +
Sbjct: 413 ALTDVFQDAI-SRGVRNISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGIS 471
Query: 590 SDFAIVDEAYPYIAQRLLTDESPRLRNALRYTIYGKSGVFDAERFIDIMQAFENFITAAK 649
++ ++ YP+IA+++LTD SP+L+++L+ +Y + GVF +R ++
Sbjct: 472 PNYKVLGSTYPWIARKILTDSSPQLKSSLQNLLY-EEGVFRIDRLESLL----------- 519
Query: 650 SGGGEGLNGHMAELGILQSQTGYIIPVLSSSGSQPTQQIQTRAALAFLLSDKGSLFREFL 709
E L E ++Q PV+ + + +Q+ LAF +++GS RE L
Sbjct: 520 ---SESLR---TETALVQK------PVVGTESNIAMKQM-----LAFTFTEQGSFVREIL 562
Query: 710 LDEIVKGIDA 719
L E KG+DA
Sbjct: 563 LREFAKGLDA 572
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 362 bits (928), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 306/476 (64%), Gaps = 18/476 (3%)
Query: 182 YDPASITAYWGKRPRAVATRIVQLLSVAGGFLSRIAWDIVTKKIKENEVARAIELRDIVT 241
Y+ +I Y+ +RP V R ++++ G FL+ + WD T +++ + RA +LR+++T
Sbjct: 19 YNAQAIANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLRELLT 78
Query: 242 SLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQPWQEIYS 301
LGP +IK+GQALS RPD++ + EL KL D++P F +D+A L++E+LG E Y
Sbjct: 79 KLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYR 138
Query: 302 ELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIRNLGLALRKFPQV 361
E+S+ P+AAASLGQVY+ L +G+ VAVKVQRP + +++DL+++R +F +
Sbjct: 139 EISAHPVAAASLGQVYRAMLF-SGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPL 197
Query: 362 SI--DVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLT 419
++ D+ +VDE+ + FEE+DY+NEG N FAE D +V +P Y +Y+++KVLT
Sbjct: 198 NLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGD-AEVKVPCIYWQYSNQKVLT 256
Query: 420 TGWIEGEKLSQSTE-----SDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKL 474
WI+G KL+ + + D +++ +GV L+QLL+ GFFHADPHPGNL T DG++
Sbjct: 257 LEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRM 316
Query: 475 AILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKV 534
A +DFG++ +L K + +I LI++DY A+ +DF+ L F+ ++ PI+P L V
Sbjct: 317 AYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENV 376
Query: 535 FDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAI 594
F A+ G ++FNF+ + D +++ +DYPFR+P FALIIR++ EG+AL + +F I
Sbjct: 377 FGSAI-GQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKI 435
Query: 595 VDEAYPYIAQRLLTDESPRLRNALRYTIYGKSGVFDAERFIDIMQAFENFITAAKS 650
V+ AYPY+A+RLLT ESP+LR L ++ K+G F +R EN ++ A+S
Sbjct: 436 VEVAYPYVARRLLTGESPQLRRQLIDVLF-KNGKFQWQR-------LENMLSIARS 483
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 320 bits (821), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/462 (38%), Positives = 268/462 (58%), Gaps = 17/462 (3%)
Query: 197 AVATRIVQLLSVAGGFLSRIAWDIVTKKIKENEVARAIELRDIVTSLGPAYIKLGQALSI 256
++ +R V+++ G + S + +D + + +E RA +LR+++ +LGP++IK GQ L+
Sbjct: 131 SLVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPSFIKAGQVLAN 190
Query: 257 RPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQPWQEIYSELSSSPIAAASLGQV 316
RPDI+ M EL L D VP FP++VA +I+EELGQP + I+S++SS IAAASLGQV
Sbjct: 191 RPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQV 250
Query: 317 YKGRLKENGDLVAVKVQRPFVLETVTVDLFIIRNLGLALRKFP--QVSIDVVGLVDEWAA 374
Y+ L+ G+ VA+KVQRP + + DLF+ R L L F ++ + +VDE+
Sbjct: 251 YRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAELIVDEFGE 310
Query: 375 RFFEELDYVNEGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLS----- 429
+ EELDY E N F E K D P V IP Y+ +VL WI+G + +
Sbjct: 311 KLLEELDYTLEARNIEDFLENFKDD-PTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAI 369
Query: 430 QSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQ 489
+ D+ + VGV L+QLL+ G FH DPHPGN+ DG++A +DFG V L+
Sbjct: 370 KDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQN 429
Query: 490 KYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKVFDQALEGGGAKNFNF 549
K +I+A+ H ++ DY + DF +L F+ + ++ PI+P L ++ Q G G +FNF
Sbjct: 430 KQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIW-QNSAGKGLADFNF 488
Query: 550 QELAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTD 609
+ + ++ +D+P RIP F+L+IR++ EGI DF ++ AYPY+A+RLLTD
Sbjct: 489 RSVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTD 548
Query: 610 ESPRLRNALRYTIYGKSGVFDAERFIDIMQAFENFITAAKSG 651
+P LR L ++ K GVF +R EN ++ AK
Sbjct: 549 PNPALRERLIQVLF-KDGVFQWKR-------LENLLSLAKEN 582
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/409 (33%), Positives = 222/409 (54%), Gaps = 25/409 (6%)
Query: 207 SVAGGFLSRIAWDIVTKKIKENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAM 266
S AGG+ +K+++ +A +R+ + SLGP +IK+GQ S R D+ +
Sbjct: 67 SYAGGY--------TEEKLQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYV 118
Query: 267 VELQKLCDKVPSFPDDVAMALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGD 326
EL KL D+VP+F + A +I+EELG+P ++Y P+AAASLGQV+K +L G+
Sbjct: 119 EELSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQL-HTGE 177
Query: 327 LVAVKVQRPFVLETVTVDLFIIRNLGLALRKFPQV--SIDVVGLVDEWAARFFEELDYVN 384
V VKVQRP + + T+DL I++ + + P+ D G+ +E ++E DY+
Sbjct: 178 DVVVKVQRPGLKKLFTIDLAILKKIAQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLR 237
Query: 385 EGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQSTESDVG-----EL 439
EG + F + + V +P+ Y +YTS ++LT ++ G K+S + EL
Sbjct: 238 EGRSADTFRRNFRGE-DWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKEL 296
Query: 440 VNVGVICYLKQLLDTGFFHADPHPGNLIRTPD-GKLAILDFGLVTKLTDDQKYGMIEAIA 498
+G YL QLL+ GFFHADPHPGNL +P+ G+L DFG++ ++T D K +++ +
Sbjct: 297 AQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLF 356
Query: 499 HLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKVFDQALEGGGAKNFNFQ---ELAAD 555
+ ++ E IV V L + E ++ PI + + D ++ K F Q +++ D
Sbjct: 357 GVAEKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMD----KPFEEQSITKISDD 412
Query: 556 LAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQ 604
L +I +D PFR P F ++RA LEG+ + DF + A P+ Q
Sbjct: 413 LYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQ 461
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/432 (28%), Positives = 221/432 (51%), Gaps = 31/432 (7%)
Query: 191 WGKRPRAVATRIVQLLSVAGGFLSRIAWDIVTK-KIKENEVARAIELRDIVTSLGPAYIK 249
W R R + + V F+ ++WD +T + + RA L + LGP +IK
Sbjct: 15 WSGLSRRPWRRQLAVTRVFLLFVFFLSWDRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIK 74
Query: 250 LGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQPWQEIYSELSSSPIA 309
+GQ+LS R DI+ + +L D+VP F A+A+I++EL EI+ + +P+A
Sbjct: 75 IGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLA 134
Query: 310 AASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFII-RNLGLALRKFPQV-----SI 363
+ASLGQV++ L G+ V VKVQRP + + +D ++ + L LA R P
Sbjct: 135 SASLGQVHRAVLP-TGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKY 193
Query: 364 DVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLTTGWI 423
++ + E+ + F E+DY++EG+N F + D P+V +P+ Y +YT+R VLT ++
Sbjct: 194 EIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNF-ADYPRVRVPEIYWQYTTRMVLTLEYL 252
Query: 424 EGEKLS--QSTES---DVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILD 478
G K+ Q+ E+ ++ ++ G+ YLKQLL GFF +DPHPGN+ G L D
Sbjct: 253 PGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYD 312
Query: 479 FGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKVFDQA 538
FG + ++ K M++ ++ +D +++ + + + +L PI ++ + D
Sbjct: 313 FGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLD-- 370
Query: 539 LEGGGAKNFN--------FQELAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNS 590
NF F ++ ++ + PFR+PP I++++ L+GIA +
Sbjct: 371 -------NFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDP 423
Query: 591 DFAIVDEAYPYI 602
+ ++ + P+I
Sbjct: 424 RYNLIAASQPFI 435
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 203/394 (51%), Gaps = 22/394 (5%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP +IK GQ LS RPD++ VEL KL DKVP F ++ I++ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIR-NL 351
GQ +++Y+E + PIA+AS+ QV+K RL +G+ VAVKV RP +L + DL ++R
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 352 GLALRKFPQ-VSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIPKTY 409
G R F + +V E+ +ELD + E N + L +D+ +++PK +
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDM--LIVPKVF 227
Query: 410 EKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFFHADPHPG 464
Y + VLT W++G +S ++ D+ +L + GV + Q+ GFFHAD HPG
Sbjct: 228 YDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPG 287
Query: 465 NLIRTPDGKLAILDFGLVTKLTD-DQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGVN 523
N++ D + LDFG+V LTD D++Y I +A +RDY + ++ ++P
Sbjct: 288 NILVAADNRYIALDFGIVGTLTDYDKRYLAINFLA-FFNRDYRRVATAHIESGWVPADTR 346
Query: 524 LE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAVG 579
E + V VF++ + +F + L +++ + I P L+ + +
Sbjct: 347 AEELEAAVRAVCEPVFNKPIS-----QISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLL 401
Query: 580 VLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+EG+ + D + A P++ + + P+
Sbjct: 402 NIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPK 435
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 205/395 (51%), Gaps = 24/395 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP +IK GQ LS RPD++ VEL KL DKVP F ++ I++ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIRNLG 352
GQ +++Y+E + PIA+AS+ QV+K RL +G+ VAVKV RP +L + DL ++R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMR-FG 168
Query: 353 LAL--RKFPQ-VSIDVVGLVDEWAARFFEELDYVNEGEN-GTLFAEMMKTDLPQVVIPKT 408
A R F + + +V E+ +ELD + E N G L +++ +++PK
Sbjct: 169 AAWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNM--LIVPKV 226
Query: 409 YEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFFHADPHP 463
+ Y + VLT W++G ++ ++ D+ +L + GV + Q+ GFFHAD HP
Sbjct: 227 FYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHP 286
Query: 464 GNLIRTPDGKLAILDFGLVTKLTD-DQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGV 522
GN++ D + LDFG+V LTD D++Y I +A +RDY + ++ ++P
Sbjct: 287 GNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLA-FFNRDYRRVATAHIESGWVPADT 345
Query: 523 NLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAV 578
E + V VF++ + +F + L +++ + I P L+ + +
Sbjct: 346 RAEELEAAVRAVCEPVFNKPIS-----QISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTL 400
Query: 579 GVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+EG+ + D + A P++ + + P+
Sbjct: 401 LNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPK 435
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 197/392 (50%), Gaps = 32/392 (8%)
Query: 217 AWD-----IVTKKIKENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQK 271
WD + K+ E ++ L I+ LGP YIKLGQ LS RPD+L P + L
Sbjct: 22 GWDYMNGLLTLGKVGEPQIPTPEVLTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTA 81
Query: 272 LCDKVPSFPDDVAMALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVK 331
L VP P L++ E QP E + E+ S PIAA S+GQ+++ L ++G+ VA+K
Sbjct: 82 LQSNVPPLPWSAIEDLLQREFPQPLGETFQEIESEPIAAGSIGQIHRAVL-QSGETVAIK 140
Query: 332 VQRPFVLETVTVDLFIIRNLG--LALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGE-N 388
V+RP + V D +I+++ LAL +F Q + D+V L DE+ EL++ E
Sbjct: 141 VKRPGIDVIVEQDSLLIKDVAELLALTEFGQ-NYDIVKLADEFTQTVKAELNFDTEAAYT 199
Query: 389 GTLFAEMMKT---DLPQVVIPKTYEKYTSRKVLTTGWIEG-----EKLSQ-STESDVG-- 437
L + KT D Q+VIPK Y + T++K L W++G L+Q ++ D+
Sbjct: 200 NNLRTNLAKTTWFDPNQLVIPKVYWELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEK 259
Query: 438 --ELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIE 495
E+ + + +QL GFFHADPHPGN+ DG+LA++D G+V +L + + E
Sbjct: 260 KKEITTLLFRAFFQQLYVDGFFHADPHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTE 319
Query: 496 AIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPI----LPVLAKVFDQALEGGGAKNFNFQE 551
+ ++ D + + V+L VN + + +L K +D +L FNF E
Sbjct: 320 MLLAIVDLDAKRCAQLTVELSESVGRVNFQRLEVDYERMLRKYYDLSL-----SEFNFSE 374
Query: 552 LAADLAQITFDYPFRIPPYFALIIRAVGVLEG 583
+ + +I ++P L + + LEG
Sbjct: 375 VVYEFLRIARVNKLKVPACLGLYAKCLANLEG 406
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 193/382 (50%), Gaps = 17/382 (4%)
Query: 236 LRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQP 295
+R + SLGP ++K GQ LS R D+L P EL L D+VP F D+A +++ LG+
Sbjct: 52 VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRK 111
Query: 296 WQEIYSELSSSPIAAASLGQVYKGRLKE----NGDLVAVKVQRPFVLETVTVDLFIIRNL 351
+E++ + P+A+AS+ QV+K L++ G VAVKV RP +L + DL ++R L
Sbjct: 112 VEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTL 171
Query: 352 GLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMK-TDLPQVVIPKT 408
+ K + +V E+ +ELD ++E N + K +D+ +++P+
Sbjct: 172 AGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDM--LIVPEV 229
Query: 409 YEKYTSRKVLTTGWIEG------EKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPH 462
+ Y+SR+VLT W+ G E+L ++ D+ +L GV + Q+ GFFHAD H
Sbjct: 230 FYDYSSREVLTLEWMHGIPVGQIERLREAG-VDLQKLSRFGVEIFFTQVFRHGFFHADMH 288
Query: 463 PGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPEGV 522
PGN+ DG+ LDFG+V LTD K+ + +RDY + ++ ++P
Sbjct: 289 PGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDT 348
Query: 523 NLEPILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRAVGVLE 582
E + + V + E ++ +F + L + + + I P L+ + + +E
Sbjct: 349 RAEELEAAVRTVCEPIFEKPLSE-ISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIE 407
Query: 583 GIALVGNSDFAIVDEAYPYIAQ 604
G+ + + + D A P++ +
Sbjct: 408 GLGRQLDPELDLWDTAKPFLTK 429
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 23/413 (5%)
Query: 202 IVQLLSVAG-GFLSRIAWDIVTKKIKENEVARAIELRDIVTSLGPAYIKLGQALSIRPDI 260
IV++L+ G GF IV K+ N+ + LR LGP +IK+GQ LS RPD+
Sbjct: 9 IVKVLAYYGFGF-------IVDSKLNGNKKSPE-NLRKAFEELGPTFIKIGQILSTRPDL 60
Query: 261 LSPVAMVELQKLCDKVP--SFPDDVAMALIKEELGQPWQEIYSELSSSPIAAASLGQVYK 318
L + EL KL + VP +F D L EEL + +PI +AS+ QV+
Sbjct: 61 LPLPYIKELSKLQNNVPPENFID--IENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHD 118
Query: 319 GRLKENGDLVAVKVQRPFVLETVTVDLFIIRN-LGLALRKFPQVSIDVVGLVDEWAARFF 377
LK+ G V VK+QRP + E + DL II+ L + KF ID +DE
Sbjct: 119 AILKD-GRFVIVKIQRPGIAEMMKTDLSIIKKLLNITKTKFTDALIDPKEAIDELFISTT 177
Query: 378 EELDYVNEGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQSTE---- 433
+ELD++NE N F + + D+ V P T +K + K++ I G K+ +
Sbjct: 178 QELDFINEINNIKKFKK-LNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNE 236
Query: 434 -SDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYG 492
D+ EL + Y KQ+ GFFH DPHPGNL+ + + +DFG++ ++ K
Sbjct: 237 GYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLL-IRENHICYIDFGIMGTISKSLKIS 295
Query: 493 MIEAIAHLIHRDYEAIVKDFVKLDFIPEGVNLEPILPVLAKVFDQALEGGGAKNFNFQEL 552
+ +AI + + D ++ + + VN + + +FD + KN +
Sbjct: 296 LNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYI-SVSLKNIKISVM 354
Query: 553 AADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQR 605
++ QI+ + ++P +++++ ++EG+ + + +IVD PY+ +
Sbjct: 355 LQEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVKSQ 407
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/396 (28%), Positives = 190/396 (47%), Gaps = 25/396 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
+ LR + SLGP ++K GQ LS R D+L P EL KL D+VP F VA+A+I++ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLK---ENGDLVAVKVQRPFVLETVTVDLFIIR 349
G P I+ + P+A+AS+ QV+ LK G VAVKV RP +L + DL ++R
Sbjct: 109 GAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIPK 407
++ + + + +V E+ +ELD + E NG+ L +++P+
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNF-AGLDLLLVPE 227
Query: 408 TYEKYTSRKVLTTGWIEGEKLSQSTE-----SDVGELVNVGVICYLKQLLDTGFFHADPH 462
Y +Y + VL + G +SQ D+ +L GV + Q+ GFFHAD H
Sbjct: 228 MYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMH 287
Query: 463 PGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFI 518
PGN+ + D G+ LDFG++ L+D K + + RDY + ++ ++
Sbjct: 288 PGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWV 347
Query: 519 PEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALI 574
P +E I V FD+AL K+ + ++ L + + I P L+
Sbjct: 348 PATTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLL 402
Query: 575 IRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + +EG+ + + + A PY+ +R + ++
Sbjct: 403 QKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMNEQ 437
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 197/421 (46%), Gaps = 30/421 (7%)
Query: 212 FLSRIAWDIVTKKIKENEVA--RAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVEL 269
+L ++W + + + +A R LR + LGP +IK GQ LS R D+L P EL
Sbjct: 33 WLRALSWLLPWRWLPRRPLALSRGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADEL 92
Query: 270 QKLCDKVPSFPDDVAMALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVA 329
+L D+VP FP+D A+ALI+ +LG P ++++ S P+A+AS+ QV+ +LK +G+ V
Sbjct: 93 ARLQDQVPPFPEDQAIALIERQLGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVV 151
Query: 330 VKVQRPFVLETVTVDLFIIRNLGLALRKFPQVSIDV-----VGLVDEWAARFFEELDYVN 384
VKV RP + + DL L L R + S D V +V ++ F+ELD +
Sbjct: 152 VKVVRPGLKPVIRQDLAW---LFLLARIAERASADARRLRPVEVVSDYEKTIFDELDLLR 208
Query: 385 EGENGTLFAEMMKTDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGEL 439
E N + + P + +P+ Y +VL I G ++ +D+ L
Sbjct: 209 EAANASQLRRNFEGS-PLLYVPQVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLL 267
Query: 440 VNVGVICYLKQLLDTGFFHADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIE 495
GV + Q+ FFHAD HPGN+ RTP I +D G++ LTD+ + +
Sbjct: 268 AERGVEIFFTQVFRDSFFHADMHPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLAR 327
Query: 496 AIAHLIHRDYEAIVKDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQE 551
+ RDY + + + ++P + I V +F++ L K+ +F +
Sbjct: 328 NLIAFFKRDYRKVAQLHIDSGWVPADTKVNEFEAAIRTVCEPIFEKPL-----KDISFGQ 382
Query: 552 LAADLAQITFDYPFRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDES 611
L L Q + + P L+ + + +EG+ D + A P++ + + S
Sbjct: 383 LLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFLERWMRERVS 442
Query: 612 P 612
P
Sbjct: 443 P 443
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 195/412 (47%), Gaps = 22/412 (5%)
Query: 224 KIKENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDV 283
K K+ +++R +R +LGP +IK GQ LS R D+L P EL L D+VP F
Sbjct: 45 KKKQPDLSRGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQA 104
Query: 284 AMALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTV 343
A I+E LG P + ++ + +P+A+AS+ QV+ GRLKENG + +KV RP + +
Sbjct: 105 ARLKIEESLGCPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEA 164
Query: 344 DLFIIRNLGLALRKF-PQVS-IDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLP 401
DL +++ L + +F PQ + + + +V+E+ +EL+ + E N T
Sbjct: 165 DLRLMQTLARLVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNF-TGSD 223
Query: 402 QVVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGF 456
+ +P+ + ++ VL I G +S ++ +++ L GV + Q+ F
Sbjct: 224 ALYVPEVFTEHCREHVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSF 283
Query: 457 FHADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDF 512
FHAD HPGN+ PD L I +D G+V L + K + E +RDY + +
Sbjct: 284 FHADMHPGNIFVSYEHPDNPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELH 343
Query: 513 VKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIP 568
V+ ++P ++ I VL +F++ L +F + +L + +
Sbjct: 344 VESGWVPPDTKVDEFEFAIRTVLEPIFEKPL-----SEISFGHVLLNLFNTARRFNMAVQ 398
Query: 569 PYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR-LRNALR 619
P L+ + + +EG+ + A PY+ + P+ + NA++
Sbjct: 399 PQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYLENWMHEQVGPKAVWNAIK 450
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
A+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+A++++ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVTVDLFIIR 349
G ++ E P+A+AS+ QV+ +LK+ G VAVKV RP +L + DL ++R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ + Y++ VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG+V L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDE 610
+ + + +EG+ + + + A PY+ +R +T++
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYL-ERWMTEQ 437
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 198/419 (47%), Gaps = 42/419 (10%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
+ + R + LR + LGP ++K GQ LS R D++ EL KL D+VP FP DV+
Sbjct: 43 RTHHEPRGVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSR 102
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
A + + LG+P +E+++ + P+A+AS+ QV+ G L +G VAVKV RP VL + DL
Sbjct: 103 AAVVQSLGRPIEEVFASFDADPVASASIAQVHFGVL-HDGREVAVKVLRPNVLNIIEADL 161
Query: 346 FIIRNLGLALRKFPQVSIDVVGL-----VDEWAARFFEELDYVNEGENGT-LFAEMMKTD 399
++R +A ++S D L V E+ +ELD E N L M D
Sbjct: 162 ALLR---VAAAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLD 218
Query: 400 LPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDT 454
L +++P+ +S +VL + G +SQ + D+ +L GV + Q+
Sbjct: 219 L--IMLPEMIWDLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRD 276
Query: 455 GFFHADPHPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVK 510
GFFHAD HPGN++ + G+ LDFG+V L K + + RDY + +
Sbjct: 277 GFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAE 336
Query: 511 DFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFR 566
++ ++P ++ + V FD+ L K+ + ++ L Q + +
Sbjct: 337 LHIESGWVPASTRVDELEGAVRAVCEPHFDRPL-----KDISLGQVLLRLFQTSRRFNVE 391
Query: 567 IPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRL------------LTDESPR 613
I P L+ + + +EG+ + + + A P++ + + + DE+PR
Sbjct: 392 IQPQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPFLERWMNEQVGWRALLGSIKDEAPR 450
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 196/416 (47%), Gaps = 31/416 (7%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ + R LR+ + SLGP ++K GQ LS R D++ P EL L D+VP F DVA+
Sbjct: 43 RKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAI 102
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVT 342
A I+ +P E++ P+A+AS+ QV+ +++ + VAVKV RP +L +
Sbjct: 103 ATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVID 162
Query: 343 VDLFIIRNLGLALRKFPQVSIDVVGL-----VDEWAARFFEELDYVNEGENGTLFAEMMK 397
DL ++R + + +S D L V E+ +ELD V E N M+
Sbjct: 163 KDLALMRMMAGWVES---LSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQ 219
Query: 398 TDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLL 452
L V+IP+ + + +VL ++G ++Q S D+ +L GV + Q+
Sbjct: 220 G-LDLVLIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVF 278
Query: 453 DTGFFHADPHPGNLIRT--PD--GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAI 508
GFFHAD HPGN+ + P+ G+ LDFG+V LT+ K + + RDY+ +
Sbjct: 279 RDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRV 338
Query: 509 VKDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYP 564
+ ++ ++P + I V FD+ L K + + L Q + +
Sbjct: 339 AELHIESGWVPAHTRVNELEAAIRTVCEPYFDRPL-----KEISLGMVLLRLFQTSRRFQ 393
Query: 565 FRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESP-RLRNALR 619
I P L+ + + +EG+ + D + A P++ + +L P RL LR
Sbjct: 394 VEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGPQRLWRELR 449
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 177/396 (44%), Gaps = 14/396 (3%)
Query: 229 EVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALI 288
E +R LR LGP +IK GQ LS R D+L P EL L D+VPSF +A I
Sbjct: 50 EQSRGARLRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQI 109
Query: 289 KEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFII 348
++ LGQP + ++++ P+A+AS+ QV+ RLKEN + +KV RP + + D+ ++
Sbjct: 110 EQALGQPIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLM 169
Query: 349 RNLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQVVIP 406
R L + F P + V +++E+ +EL+ ++E N + + +P
Sbjct: 170 R-LCAKIVAFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENS-SHLYVP 227
Query: 407 KTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFFHADP 461
Y Y VL I G +S ++ +D+ L GV + Q+ FFHAD
Sbjct: 228 LVYSDYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADM 287
Query: 462 HPGNLI----RTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ D + +D G+V L K + E +RDY + + V+ +
Sbjct: 288 HPGNVFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGW 347
Query: 518 IPEGVNLEPILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFALIIRA 577
+P +E L V + A+ +F ++ +L + + P L+ +
Sbjct: 348 VPPDTKVEEFESALRTVLEPIFAKPLAE-ISFGQVLLNLFNTARRFNMHVQPQLVLLQKT 406
Query: 578 VGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+ +EG+ + A P++ + P+
Sbjct: 407 LLYIEGLGRHLYPQLDLWQTAKPFLEHWMRQQIGPK 442
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 196/416 (47%), Gaps = 31/416 (7%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ + R LR+ + SLGP ++K GQ LS R D++ P EL L D+VP F DVA+
Sbjct: 43 RKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAI 102
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKE---NGDLVAVKVQRPFVLETVT 342
A I+ +P E++ P+A+AS+ QV+ +++ + VAVKV RP +L +
Sbjct: 103 ATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVID 162
Query: 343 VDLFIIRNLGLALRKFPQVSIDVVGL-----VDEWAARFFEELDYVNEGENGTLFAEMMK 397
DL ++R + + +S D L V E+ +ELD V E N M+
Sbjct: 163 KDLALMRMMAGWVES---LSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQ 219
Query: 398 TDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLL 452
L V+IP+ + + +VL ++G ++Q S D+ +L GV + Q+
Sbjct: 220 G-LDLVLIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVF 278
Query: 453 DTGFFHADPHPGNLIRT--PD--GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAI 508
GFFHAD HPGN+ + P+ G+ LDFG+V LT+ K + + RDY+ +
Sbjct: 279 RDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRV 338
Query: 509 VKDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYP 564
+ ++ ++P + I V FD+ L K + + L Q + +
Sbjct: 339 AELHIESGWVPAHTRVNELEAAIRTVCEPYFDRPL-----KEISLGMVLLRLFQTSRRFQ 393
Query: 565 FRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESP-RLRNALR 619
I P L+ + + +EG+ + D + A P++ + +L P RL LR
Sbjct: 394 VEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGPQRLWRELR 449
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 187/391 (47%), Gaps = 26/391 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+ L+++ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLK---ENGDLVAVKVQRPFVLETVTVDLFIIR 349
G P ++ + P+A+AS+ QV+ +K G VAVKV RP +L + DL ++R
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ Y ++ + VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG++ L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPTTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQ 604
+ + + +EG+ + + + A PY+ +
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYLER 432
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 142 bits (359), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 185/390 (47%), Gaps = 26/390 (6%)
Query: 232 RAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEE 291
R LR + LGP ++K GQ LS R D+L P EL KL D+VP F +A A+++
Sbjct: 49 RGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERS 108
Query: 292 LGQPWQEIYSELSSSPIAAASLGQVYKGRLK---ENGDLVAVKVQRPFVLETVTVDLFII 348
LG+P ++ P+A+AS+ QV+ L+ ++G VAVKV RP +L + DL ++
Sbjct: 109 LGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALM 168
Query: 349 RNLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVI 405
R++ + K + +V E+ +ELD + E N + L K++L +++
Sbjct: 169 RDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSEL--LLV 226
Query: 406 PKTYEKYTSRKVLTTGWIEGEKLSQSTE-----SDVGELVNVGVICYLKQLLDTGFFHAD 460
P+ + + + +V + G ++S + E D +L GV + Q+ GFFHAD
Sbjct: 227 PEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHAD 286
Query: 461 PHPGNLIRT--PD--GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLD 516
HPGN++ + P+ G+ LDFG+V L++ K + + RDY + V+
Sbjct: 287 MHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESG 346
Query: 517 FIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFA 572
+ PE +E I FD+ L + + L Q + + + P
Sbjct: 347 WAPEETRVEELEGAIRACCEPYFDRPL-----GEISLGLVLMRLFQTSRRFNVEVQPQLV 401
Query: 573 LIIRAVGVLEGIALVGNSDFAIVDEAYPYI 602
L+ + + +EG+ + D + A P++
Sbjct: 402 LLQKTLLNVEGLGRQLDPDLDLWKTAKPFL 431
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 196/406 (48%), Gaps = 36/406 (8%)
Query: 232 RAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEE 291
R LR+ + LGP ++K GQ LS R D+L P EL L D+VP FP VA+A I+
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERA 108
Query: 292 LGQPWQEIYSELSSSPIAAASLGQVYKGRLK-ENGDL--VAVKVQRPFVLETVTVDLFII 348
+P +++ + +PIA+AS+ QV+ ++ + G++ VAVKV RP + + DL ++
Sbjct: 109 FRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALM 168
Query: 349 RNLGLALRKF--------PQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDL 400
+ + K P+ +VVG D++ +ELD V E N M + L
Sbjct: 169 AMMAGWVEKLSPDGKRLKPR---EVVGEFDKY---LHDELDLVREAANAAQLRRNMAS-L 221
Query: 401 PQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTG 455
V+IP+ + + +V+ + G ++Q + D+ +L GV + Q+ G
Sbjct: 222 ELVLIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDG 281
Query: 456 FFHADPHPGNLIRT--PD--GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKD 511
FFHAD HPGN+ + P+ G+ LDFG++ LT+ K + + RDY+ + +
Sbjct: 282 FFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAEL 341
Query: 512 FVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRI 567
++ ++PEG ++ I V FD+ L K + + L Q + + I
Sbjct: 342 HLESGWVPEGTRIDELEGAIRTVCEPYFDRPL-----KEISLGMVLMRLFQTSRRFHVEI 396
Query: 568 PPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
P L+ + + +EG+ + + + A P++ + ++ P+
Sbjct: 397 QPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIGPK 442
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 186/391 (47%), Gaps = 26/391 (6%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
+ LR + SLGP ++K GQ LS R D+L EL KL D+VP F VA+ L++ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENAL 108
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLK---ENGDLVAVKVQRPFVLETVTVDLFIIR 349
G P ++ + P+A+AS+ QV+ +K G VAVKV RP +L + DL ++R
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 350 NLGLALRKF--PQVSIDVVGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTDLPQVVIP 406
++ + + + +V E+ +ELD + E NG+ L DL +++P
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL--LLVP 226
Query: 407 KTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFHADP 461
+ Y ++ + VL + G +SQ + D+ +L GV + Q+ GFFHAD
Sbjct: 227 EMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 462 HPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDF 517
HPGN+ + D G+ LDFG++ L+D K + + RDY + ++ +
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346
Query: 518 IPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFAL 573
+P +E I V FD+AL K+ + ++ L + + I P L
Sbjct: 347 VPPTTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVL 401
Query: 574 IIRAVGVLEGIALVGNSDFAIVDEAYPYIAQ 604
+ + + +EG+ + + + A PY+ +
Sbjct: 402 LQKTMLNVEGLGRSLDPELDLWKTAKPYLER 432
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 189/404 (46%), Gaps = 24/404 (5%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
K+ E++R LR + LGP +IK GQ LS R D+L EL L D+VP F +M
Sbjct: 49 KQLELSRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSM 108
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
LI+E+LG+ E++S P+A+AS+ QV+ +LK G+ V VKV RP + + DL
Sbjct: 109 KLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIGQDL 167
Query: 346 FIIRNLGLALRKFPQVS--IDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQV 403
+ L A +F + + V +V ++ ++ELD + E N + + P +
Sbjct: 168 AWLFILARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGS-PLL 226
Query: 404 VIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFH 458
+P+ Y + KVL I G +++ +D+ L GV + Q+ FFH
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFH 286
Query: 459 ADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIVKDFV 513
AD HPGN+ + + +D G+V LT +DQ Y + + RDY + + +
Sbjct: 287 ADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDY-LARNLFAFFKRDYRRVAQLHI 345
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P L I V +F++ L K+ +F ++ L Q + + P
Sbjct: 346 DSGWVPAETKLNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRFNMEVQP 400
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
L+ + + +EG+ D + + A P++ + + SP+
Sbjct: 401 QLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFLERWMRERMSPK 444
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 113/407 (27%), Positives = 190/407 (46%), Gaps = 30/407 (7%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
K E++R LR + LGP +IK GQ LS R D+L EL +L D+VP F +++
Sbjct: 49 KPLELSRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSV 108
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
LI+E+LG+ E++S P+A+AS+ QV+ +LK G+ V VKV RP + + DL
Sbjct: 109 KLIEEQLGKKISEVFSRFDVEPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIAQDL 167
Query: 346 FIIRNLGLALRKFPQVSIDV-----VGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDL 400
+ L A K VS D V +V ++ ++ELD + E N + +
Sbjct: 168 AWLFILARAAEK---VSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGS- 223
Query: 401 PQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTG 455
P + +P+ Y + KVL I G +++ +D+ L GV + Q+
Sbjct: 224 PLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDS 283
Query: 456 FFHADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIVK 510
FFHAD HPGN+ + + +D G+V LT +DQ Y + + RDY + +
Sbjct: 284 FFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDY-LARNLFAFFKRDYRRVAQ 342
Query: 511 DFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFR 566
+ ++P L I V +F++ L K+ +F ++ L Q +
Sbjct: 343 LHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRFNME 397
Query: 567 IPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+ P L+ + + +EG+ D + + A P++ + + SP+
Sbjct: 398 VQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFLERWMRERVSPK 444
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 26/409 (6%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ E+ R LR + LGP +IK GQ LS R D+L EL L DKVP FP ++A+
Sbjct: 50 RKLELTRGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAV 109
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVD- 344
I+E+LG +++++ P+A+AS+ QV+ RLK +G+ V VKV RP + + D
Sbjct: 110 KRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDI 168
Query: 345 --LFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQ 402
LFI+ L + + + V +V ++ +ELD + E N + + P
Sbjct: 169 AWLFILARLAERVSSEAR-RLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGS-PL 226
Query: 403 VVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFF 457
+ +P+ Y + KVL I G ++ + +D L GV + Q+ FF
Sbjct: 227 LYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFF 286
Query: 458 HADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFV 513
HAD HPGN+ R P I +D G+V LTD+ + + + RDY + + +
Sbjct: 287 HADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHI 346
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P + I V +F++ L K+ +F ++ L Q + I P
Sbjct: 347 DSGWVPAETKVNDFEAAIRTVCEPIFEKPL-----KDISFGQVLLRLFQTARRFNMEIQP 401
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR--LRN 616
L+ + + +EG+ + + A P++ + + SP+ LRN
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLLRN 450
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 26/409 (6%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ E+ R LR + LGP +IK GQ LS R D+L EL L DKVP FP ++A+
Sbjct: 50 RKLELTRGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAV 109
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVD- 344
I+E+LG +++++ P+A+AS+ QV+ RLK +G+ V VKV RP + + D
Sbjct: 110 KRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDI 168
Query: 345 --LFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQ 402
LFI+ L + + + V +V ++ +ELD + E N + + P
Sbjct: 169 AWLFILARLAERVSSEAR-RLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGS-PL 226
Query: 403 VVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFF 457
+ +P+ Y + KVL I G ++ + +D L GV + Q+ FF
Sbjct: 227 LYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFF 286
Query: 458 HADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFV 513
HAD HPGN+ R P I +D G+V LTD+ + + + RDY + + +
Sbjct: 287 HADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHI 346
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P + I V +F++ L K+ +F ++ L Q + I P
Sbjct: 347 DSGWVPAETKVNDFEAAIRTVCEPIFEKPL-----KDISFGQVLLRLFQTARRFNMEIQP 401
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR--LRN 616
L+ + + +EG+ + + A P++ + + SP+ LRN
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLLRN 450
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 26/409 (6%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ E+ R LR + LGP +IK GQ LS R D+L EL L DKVP FP ++A+
Sbjct: 50 RKLELTRGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAV 109
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVD- 344
I+E+LG +++++ P+A+AS+ QV+ RLK +G+ V VKV RP + + D
Sbjct: 110 KRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDI 168
Query: 345 --LFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQ 402
LFI+ L + + + V +V ++ +ELD + E N + + P
Sbjct: 169 AWLFILARLAERVSSEAR-RLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGS-PL 226
Query: 403 VVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFF 457
+ +P+ Y + KVL I G ++ + +D L GV + Q+ FF
Sbjct: 227 LYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFF 286
Query: 458 HADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFV 513
HAD HPGN+ R P I +D G+V LTD+ + + + RDY + + +
Sbjct: 287 HADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHI 346
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P + I V +F++ L K+ +F ++ L Q + I P
Sbjct: 347 DSGWVPAETKVNDFEAAIRTVCEPIFEKPL-----KDISFGQVLLRLFQTARRFNMEIQP 401
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR--LRN 616
L+ + + +EG+ + + A P++ + + SP+ LRN
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLLRN 450
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 26/409 (6%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ E+ R LR + LGP +IK GQ LS R D+L EL L DKVP FP ++A+
Sbjct: 50 RKLELTRGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAV 109
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVD- 344
I+E+LG +++++ P+A+AS+ QV+ RLK +G+ V VKV RP + + D
Sbjct: 110 KRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDI 168
Query: 345 --LFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQ 402
LFI+ L + + + V +V ++ +ELD + E N + + P
Sbjct: 169 AWLFILARLAERVSSEAR-RLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGS-PL 226
Query: 403 VVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFF 457
+ +P+ Y + KVL I G ++ + +D L GV + Q+ FF
Sbjct: 227 LYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFF 286
Query: 458 HADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFV 513
HAD HPGN+ R P I +D G+V LTD+ + + + RDY + + +
Sbjct: 287 HADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHI 346
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P + I V +F++ L K+ +F ++ L Q + I P
Sbjct: 347 DSGWVPAETKVNDFEAAIRTVCEPIFEKPL-----KDISFGQVLLRLFQTARRFNMEIQP 401
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR--LRN 616
L+ + + +EG+ + + A P++ + + SP+ LRN
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLLRN 450
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 189/410 (46%), Gaps = 36/410 (8%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
K E++R LR + LGP +IK GQ LS R D+L P EL L D+VP F A+
Sbjct: 50 KPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAV 109
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVD- 344
ALI+E+LG E++S P+A+AS+ QV+ RLK G+ V VKV RP + + D
Sbjct: 110 ALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPVIAQDL 168
Query: 345 --LFII-----RNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMK 397
LF+I R A R P +++VG ++ ++ELD + E N + +
Sbjct: 169 AWLFLIAKAAERASADARRLHP---VEIVG---DYEKTIYDELDLLREAANASQLRRNFE 222
Query: 398 TDLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLL 452
D + +P+ Y KVL I G ++ +D+ L GV + Q+
Sbjct: 223 -DSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVF 281
Query: 453 DTGFFHADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEA 507
FFHAD HPGN+ ++ + +D G+V LT +DQ Y + + RDY
Sbjct: 282 RDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDY-LARNLFAFFKRDYRR 340
Query: 508 IVKDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDY 563
+ + + ++P + I V +F++ L K+ +F ++ L Q +
Sbjct: 341 VAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRF 395
Query: 564 PFRIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+ P L+ + + +EG+ D + A PY+ + + SP+
Sbjct: 396 NMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLERWMRDRYSPK 445
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 185/405 (45%), Gaps = 21/405 (5%)
Query: 224 KIKENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDV 283
K K + R +R +LGP +IK GQ LS R D+L P EL L D+VP F
Sbjct: 45 KNKRQGLNRGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQA 104
Query: 284 AMALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTV 343
A I+ LG + ++ + +P+A+AS+ QV+ RLKENG + +KV RP + +
Sbjct: 105 ARRQIEASLGCTIETLFDDFDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEA 164
Query: 344 DLFIIRNLGLALRKF-PQVS-IDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLP 401
DL +++ L + +F PQ + + +V+E+ +EL+ + E N T
Sbjct: 165 DLRLMQALARLVARFVPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNF-TGSE 223
Query: 402 QVVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGF 456
+ +P+ + ++ +VL I G +S ++ +++ L GV + Q+ F
Sbjct: 224 ALYVPEVFTEHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSF 283
Query: 457 FHADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDF 512
FHAD HPGN+ P+ L I +D G+V L + K + E +RDY + +
Sbjct: 284 FHADMHPGNIFVSYEHPENPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELH 343
Query: 513 VKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIP 568
V+ ++P ++ I VL +F++ L +F + +L + ++
Sbjct: 344 VESGWVPPDTKVDEFEFAIRTVLEPIFEKPL-----SEISFGHVLLNLFNTARRFNMQVQ 398
Query: 569 PYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
P L+ + + +EG+ + A PY+ + P+
Sbjct: 399 PQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYLENWMYQQVGPK 443
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 183/392 (46%), Gaps = 24/392 (6%)
Query: 227 ENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVE-LQKLCDKVPSFPDDVAM 285
+ +++R LR + LGP ++K GQ LS R D+L P M E L++L D+VP FP + A
Sbjct: 46 QPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLL-PDDMAESLKQLQDRVPPFPSEQAR 104
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
+I++ LG P E+++E S P+A+AS+ QV+ L NG V VKV RP + + + DL
Sbjct: 105 GIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLP-NGQKVVVKVLRPGIEKVIRQDL 163
Query: 346 FIIRNLGLALRKFPQ--VSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQV 403
++ + L K+ + V +V ++ + +ELD E N + + P +
Sbjct: 164 GLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENS-PLI 222
Query: 404 VIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGFFH 458
IP YT + VL I G ++ + ++ L GV + Q+ FFH
Sbjct: 223 YIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFH 282
Query: 459 ADPHPGNL---IRTP-DGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVK 514
AD HPGN+ + P D K +DFG+V L D + + + RDY + + ++
Sbjct: 283 ADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQ 342
Query: 515 LDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPY 570
++P + I V +F++ L K+ +F L Q + + P
Sbjct: 343 SGWVPPETRVNEFEAAIRTVCEPIFERPL-----KDISFGHFLLRLFQTARRFNMEVQPQ 397
Query: 571 FALIIRAVGVLEGIALVGNSDFAIVDEAYPYI 602
L+ + + +EG+ D + A P++
Sbjct: 398 LVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFL 429
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 191/408 (46%), Gaps = 32/408 (7%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
+++E++R + R + LGP +IK GQ LS R D+L EL L D+VP F VA+
Sbjct: 49 RKSELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAI 108
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
LI+E+LG +++S +P+A+AS+ QV+ LK G+ V VKV RP + + DL
Sbjct: 109 NLIEEQLGARICDVFSRFDETPLASASVAQVHAACLK-TGEEVVVKVVRPGLKPVIGQDL 167
Query: 346 FIIRNLGLALRKFPQVSIDV-----VGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTD 399
+ L R +VS D V +V ++ ++ELD + E N + L +D
Sbjct: 168 AWLFILA---RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSD 224
Query: 400 LPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDT 454
L + +P+ Y + KVL I G +++ +D+ L GV + Q+
Sbjct: 225 L--LYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRD 282
Query: 455 GFFHADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIV 509
FFHAD HPGN+ + K +D G+V LT +DQ Y + + RDY +
Sbjct: 283 SFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDY-LARNLFAFFKRDYRRVA 341
Query: 510 KDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPF 565
+ + ++P L I V +F++ L K+ +F ++ L Q +
Sbjct: 342 QLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRFNM 396
Query: 566 RIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+ P L+ + + +EG+ D + A PY+ + + SP+
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYLERWMRERVSPK 444
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 136 bits (342), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 187/406 (46%), Gaps = 24/406 (5%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
++ + R LR+ + LGP ++K GQ LS R D+L P EL L D+VP F DVA+
Sbjct: 43 RKLDAPRGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAV 102
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDL---VAVKVQRPFVLETVT 342
A I+ +P E++ P+A+AS+ QV+ +++ + VAVKV RP +L +
Sbjct: 103 ATIERAFRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVID 162
Query: 343 VDLFIIRNLGLALRKFPQ--VSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDL 400
DL ++R + + + +V E+ +ELD + E N M+ L
Sbjct: 163 NDLGLMRAMAGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMER-L 221
Query: 401 PQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTG 455
V IP+ + +VL ++G +SQ + D+ +L GV + Q+ G
Sbjct: 222 GLVRIPEILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDG 281
Query: 456 FFHADPHPGNLIRTPD----GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKD 511
FFHAD HPGN+ + + G+ LDFG+V LT+ K + + RDY+ + +
Sbjct: 282 FFHADMHPGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAEL 341
Query: 512 FVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRI 567
V+ ++P + I V FD+ L K + + L Q + + I
Sbjct: 342 HVESGWVPADTRINELESAIRAVCEPYFDRPL-----KEISLGMVLMRLFQTSRRFHVEI 396
Query: 568 PPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
P L+ + + +EG+ + + + A P++ + +L P+
Sbjct: 397 QPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPFLEKWMLDQMGPQ 442
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 189/404 (46%), Gaps = 24/404 (5%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
+ +E RA+ LR + LGP +IK GQ LS R D+L EL L D+VP F ++
Sbjct: 50 RRSEQPRAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSV 109
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
ALI+E+LG E ++ S P+A+AS+ QV+ +LK G+ V VKV RP + + DL
Sbjct: 110 ALIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDL 168
Query: 346 -FIIRNLGLALRKFPQV-SIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQV 403
++ LA R + + +V +V ++ ++ELD + E N + + P +
Sbjct: 169 AWLYLFARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGS-PLL 227
Query: 404 VIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFH 458
+P+ Y + KVL I G ++ +D+ L GV + Q+ FFH
Sbjct: 228 YVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFH 287
Query: 459 ADPHPGNLI---RTP-DGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIVKDFV 513
AD HPGN+ R P D + +D G+V LT DQ Y + + RDY + + +
Sbjct: 288 ADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDY-LARNLLAFFKRDYRKVAQLHI 346
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P + I V +F++ L K+ +F +L L Q + + P
Sbjct: 347 DSGWVPADTQVNEFEAAIRTVCEPIFEKPL-----KDISFGQLLLRLFQTARRFNMEVQP 401
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
L+ + + +EG+ + + A P++ + + SP+
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFLERWMRKRMSPK 445
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 26/401 (6%)
Query: 230 VARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIK 289
++R LR LGP ++K GQ LS RPD++ ++EL L D V F +++
Sbjct: 46 LSRGERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVE 105
Query: 290 EELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFIIR 349
LG E+++ + P+A+AS+ QV+ LK +G V +KV RP +D I +
Sbjct: 106 SSLGASVAEVFASFNIEPLASASVAQVHTAVLK-DGREVVIKVIRP------GIDKVIAQ 158
Query: 350 NLGLALRKFPQVS--------IDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLP 401
++ L LR V + V +V+++ F+ELD E NG+ + P
Sbjct: 159 DIALLLRVARWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNF-LNSP 217
Query: 402 QVVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLDTGF 456
+ +P+ Y +YT VL I G ++ + ++D+ +L GV + Q+ + F
Sbjct: 218 LLYVPEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNF 277
Query: 457 FHADPHPGNLIRTPDGKLA----ILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDF 512
FHAD HPGN+ + A +D +V LT +Y + + + RDY + +
Sbjct: 278 FHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELH 337
Query: 513 VKLDFIPEGVNLEPILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPYFA 572
V+ ++P V +E + + V + E K +F ++ +L + + + P
Sbjct: 338 VESGWVPSHVRVEELEAAVRTVCEPIFE-KPLKEISFAQVLLNLFRTARRFEMEVQPQLV 396
Query: 573 LIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
L+ + + +EG+ D + A+P++ + L P+
Sbjct: 397 LLQKTLLNIEGLGRQLYPDLDLWATAHPFLERWLKNRFHPK 437
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 191/408 (46%), Gaps = 32/408 (7%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
+++E++R + R + LGP +IK GQ LS R D+L EL L D+VP F VA+
Sbjct: 49 RKSELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAI 108
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
LI+E+LG +++S +P+A+AS+ QV+ LK G+ V VKV RP + + DL
Sbjct: 109 KLIEEQLGARICDVFSRFDETPLASASVAQVHAACLK-TGEEVVVKVVRPGLKPIIGQDL 167
Query: 346 FIIRNLGLALRKFPQVSIDV-----VGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTD 399
+ L R +VS D V +V ++ ++ELD + E N + L +D
Sbjct: 168 AWLFILA---RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSD 224
Query: 400 LPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDT 454
L + +P+ Y + KVL I G +++ +D+ L GV + Q+
Sbjct: 225 L--LYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKMLAERGVEIFFTQIFRD 282
Query: 455 GFFHADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIV 509
FFHAD HPGN+ + K +D G+V LT +DQ Y + + RDY +
Sbjct: 283 SFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDY-LARNLFAFFKRDYRRVA 341
Query: 510 KDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPF 565
+ + ++P L I V +F++ L K+ +F ++ L Q +
Sbjct: 342 QLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRFNM 396
Query: 566 RIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+ P L+ + + +EG+ + + A PY+ + + SP+
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYLERWMRERVSPK 444
>sp|Q0I208|UBIB_HAES1 Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus somnus
(strain 129Pt) GN=ubiB PE=3 SV=1
Length = 544
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 180/400 (45%), Gaps = 22/400 (5%)
Query: 224 KIKENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDV 283
K K A + LR + LGP +IKLGQ LS R D+ EL L D V +F +
Sbjct: 45 KNKHKNKAFGLCLRLALQELGPVWIKLGQMLSTRRDLFPAEIADELALLQDNVEAFSGKI 104
Query: 284 AMALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLK---ENGDLVAVKVQRPFVLET 340
A I++ LG + +++ + +A+AS+ QV+ +LK E V +KV RP +
Sbjct: 105 ARQQIEQALGSSLENWFTDFDENALASASIAQVHTAKLKLGEEQEKEVVIKVLRPNIQPQ 164
Query: 341 VTVDLFIIRNL-GLALRKFPQ-VSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKT 398
+ DL + L GL + F + + V ++ E+ +ELD E N E
Sbjct: 165 IEADLSWMYKLAGLLPKLFREGYRLRAVEVIQEYEKTLRDELDLRVEMANAIKLRENF-L 223
Query: 399 DLPQVVIPKTYEKYTSRKVLTTGWIEGEKLS-----QSTESDVGELVNVGVICYLKQLLD 453
D P + IPK YE + + V+ I G +S Q +D+ L GV + Q+
Sbjct: 224 DSPMLYIPKMYEAFCHKNVIVMERIYGIPVSDVETLQRNGTDMKLLAERGVQVFFTQVFR 283
Query: 454 TGFFHADPHPGNLIRTP----DGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIV 509
FFHAD HPGN+ P + + +D G+V KL + K + E+ +RDY +
Sbjct: 284 DSFFHADMHPGNIFVNPHYPENPQYIGIDCGIVGKLNESDKRYLAESFVAFFNRDYRRVA 343
Query: 510 KDFVKLDFIPEGVNLEPILPVLAKVFDQALEGGGAK---NFNFQELAADLAQITFDYPFR 566
+ V + P+ N++ + F + E AK +F ++ +L + ++ +
Sbjct: 344 QMHVDAGWTPQDTNIDD----FEQAFREVCEPIFAKPLSEISFAQVLLNLFNVAREFNMQ 399
Query: 567 IPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRL 606
+ P L+ + + +EG+ + D A P++ L
Sbjct: 400 VQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPFLQNWL 439
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 181/400 (45%), Gaps = 34/400 (8%)
Query: 233 AIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEEL 292
+ LR + LGP +IKLGQ LS R D+ P EL L D+V F +A A I++ L
Sbjct: 54 GLRLRLALQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVDPFDGKIARAQIEKAL 113
Query: 293 GQPWQEIYSELSSSPIAAASLGQVYKGRLKEN---------GDLVAVKVQRPFVLETVTV 343
G P + + E + + +A+AS+ QV+ + K+N G V +KV RP + + +
Sbjct: 114 GAPLETWFDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMINA 173
Query: 344 DLFIIRNLGLALRKFPQVS-----IDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKT 398
DL ++ + + P++ + V +V E+ +ELD E N +
Sbjct: 174 DLSLMYKVASWI---PRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFEN 230
Query: 399 DLPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQSTE-----SDVGELVNVGVICYLKQLLD 453
P + IP+ Y+++ + V+ I G +S E +++ L GV + Q+
Sbjct: 231 S-PMLYIPEMYKQFCHQTVIVMERIYGIPVSNIEELHANGTNMKLLAERGVQVFFTQVFR 289
Query: 454 TGFFHADPHPGNLI---RTPDGKLAI-LDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIV 509
FFHAD HPGN+ PD I +D G+V +L D K + E+ +RDY +
Sbjct: 290 DSFFHADMHPGNIFVNRAHPDDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYRRVA 349
Query: 510 KDFVKLDFIPEGVNLEPILPVLAKVFDQALEGGGAK---NFNFQELAADLAQITFDYPFR 566
+ V + P+ N++ + F + E AK +F + +L + +Y
Sbjct: 350 EMHVASGWTPKDTNIDD----FEQAFREVCEPIFAKPLSEISFGHVLLNLFNVAREYNME 405
Query: 567 IPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRL 606
+ P L+ + + +EG+ + D A P++ + L
Sbjct: 406 VQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPFLQKWL 445
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 188/404 (46%), Gaps = 24/404 (5%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
K +++R LR + LGP +IK GQ LS R D+L EL L D+VP F ++
Sbjct: 49 KPLDLSRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSV 108
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
ALI+ +LG+ +++S P+A+AS+ QV+ +LK G+ V VKV RP + + DL
Sbjct: 109 ALIEAQLGKKISDVFSRFDIEPLASASVAQVHAAKLK-TGEEVVVKVIRPGLKPIIAQDL 167
Query: 346 FIIRNLGLALRKFPQVS--IDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTDLPQV 403
+ L A K + + V +V ++ ++ELD + E N + + P +
Sbjct: 168 AWLFILARAAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGS-PLL 226
Query: 404 VIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDTGFFH 458
+P+ Y + KVL I G +++ +D+ L GV + Q+ FFH
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFH 286
Query: 459 ADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIVKDFV 513
AD HPGN+ ++ + +D G+V LT +DQ Y + + RDY + + +
Sbjct: 287 ADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDY-LARNLFAFFKRDYRRVAQLHI 345
Query: 514 KLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPP 569
++P L I V +F++ L K+ +F ++ L Q + + P
Sbjct: 346 DSGWVPAETKLNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRFNMEVQP 400
Query: 570 YFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
L+ + + +EG+ D + + A P++ + + SP+
Sbjct: 401 QLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFLERWMRERVSPK 444
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 173/378 (45%), Gaps = 43/378 (11%)
Query: 236 LRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAMALIKEELGQP 295
LR + +G YIKLGQ ++ P + P + E Q DK P P + +++EELG+P
Sbjct: 129 LRKLFERMGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEEIRKILQEELGRP 188
Query: 296 WQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFII----RNL 351
+ +Y + +PIA+AS+ QV+ RL+ + + V +KV +P + + + DL I R
Sbjct: 189 IESVYEYVDPTPIASASIAQVHGARLRGSQEDVVIKVLKPGIEDFLVADLNFIYVVSRIF 248
Query: 352 GLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMKTD--LPQVVIPKTY 409
+F + S+ VG+V + EE+D+ E +N F ++T Q P+ Y
Sbjct: 249 EFLSPEFSRTSL--VGIVKDIRESMLEEVDFNKEAQNIESFKRYLETMGLTGQATAPRVY 306
Query: 410 EKYTSRKVLTTGWIEG---------EKLSQSTESDVGELVNVGVICYLKQLLDTGFFHAD 460
+ +SR+VLT + G L S E+ + +NV + LL FHAD
Sbjct: 307 KYCSSRRVLTMERLYGVPLTDLDSIRSLVSSPENSLITALNV----WFGSLLACESFHAD 362
Query: 461 PHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYEAIVKDFVKLDFIPE 520
H GNL DG++ LDFG+V +++ M +A + +YE++ +++
Sbjct: 363 VHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNR 422
Query: 521 GVNLEPILPVLAKVF------DQALEGGGAKNFN----------------FQELAADLAQ 558
V+ + L K+F D + A+ N L DL +
Sbjct: 423 DVDGKAFAKDLEKMFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNALFLDLVR 482
Query: 559 ITFDYPFRIPPYFALIIR 576
++ Y + P FAL+++
Sbjct: 483 VSESYGLKFPREFALLLK 500
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 32/408 (7%)
Query: 226 KENEVARAIELRDIVTSLGPAYIKLGQALSIRPDILSPVAMVELQKLCDKVPSFPDDVAM 285
+++E++R + R + LGP +IK GQ LS R D+L EL L D+VP F +A+
Sbjct: 49 RKSELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAI 108
Query: 286 ALIKEELGQPWQEIYSELSSSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDL 345
LI+E+LG +++S P+A+AS+ QV+ LK G+ V VKV RP + + DL
Sbjct: 109 KLIEEQLGARICDVFSRFDEKPLASASVAQVHAACLK-TGEEVVVKVVRPGLKPIIGQDL 167
Query: 346 FIIRNLGLALRKFPQVSIDV-----VGLVDEWAARFFEELDYVNEGENGT-LFAEMMKTD 399
+ L R +VS D V +V ++ ++ELD + E N + L +D
Sbjct: 168 AWLFILA---RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANASQLRRNFEGSD 224
Query: 400 LPQVVIPKTYEKYTSRKVLTTGWIEGEKLSQ-----STESDVGELVNVGVICYLKQLLDT 454
L + +P+ Y + KVL I G +++ +D+ L GV + Q+
Sbjct: 225 L--LYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRD 282
Query: 455 GFFHADPHPGNL----IRTPDGKLAILDFGLVTKLT-DDQKYGMIEAIAHLIHRDYEAIV 509
FFHAD HPGN+ + K +D G+V LT +DQ Y + + RDY +
Sbjct: 283 SFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDY-LARNLFAFFKRDYRRVA 341
Query: 510 KDFVKLDFIPEGVNLE----PILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPF 565
+ + ++P L I V +F++ L K+ +F ++ L Q +
Sbjct: 342 QLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPL-----KDISFGQVLMRLFQTARRFNM 396
Query: 566 RIPPYFALIIRAVGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPR 613
+ P L+ + + +EG+ + + A PY+ + + SP+
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYLERWMRERVSPK 444
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,163,213
Number of Sequences: 539616
Number of extensions: 12250460
Number of successful extensions: 41002
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 40133
Number of HSP's gapped (non-prelim): 440
length of query: 791
length of database: 191,569,459
effective HSP length: 126
effective length of query: 665
effective length of database: 123,577,843
effective search space: 82179265595
effective search space used: 82179265595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)