BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046073
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
++E RL P P+L+ KA+ D I F V KG V+ A +E W FMP R
Sbjct: 339 IREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPER 398
Query: 57 FLG-SDVDFIGRNFESIPFGVGRRIC 81
FL + I + +PFG G R C
Sbjct: 399 FLNPAGTQLISPSVSYLPFGAGPRSC 424
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLATSR----DESTWDHAHSFMPIR 56
+ E RL P +PL L + + I G+ +P+G V+ + DE+ W+ H F P R
Sbjct: 348 IAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDR 407
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL G N ++ FG G R+C
Sbjct: 408 FLEP-----GANPSALAFGCGARVC 427
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLAT----SRDESTWDHAHSFMPIR 56
+KET RL PPI +++ R A + G+ +P G +V + R + +W F P R
Sbjct: 319 IKETLRLRPPI-MIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDR 377
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+L D G F +PFG GR C
Sbjct: 378 YL-QDNPASGEKFAYVPFGAGRHRC 401
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R +PL ++ S D E+ GF +PKG ++ + +DE+ W+ F P
Sbjct: 338 IHEVQRFGDIVPLGMTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEH 397
Query: 57 FLGSDVDFIGRNFESIPFGVGRRICPDLPLDITMLY 92
FL + F+ + +PF GRR C PL L+
Sbjct: 398 FLDAQGHFV-KPEAFLPFSAGRRACLGEPLARMELF 432
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R +PL ++ S D E+ GF +PKG ++ + +DE+ W+ F P
Sbjct: 338 IHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEH 397
Query: 57 FLGSDVDFIGRNFESIPFGVGRRICPDLPLDITMLY 92
FL + F+ + +PF GRR C PL L+
Sbjct: 398 FLDAQGHFV-KPEAFLPFSAGRRACLGEPLARMELF 432
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R +PL + SED + G+ +PKG V+ + DE W F P R
Sbjct: 339 LHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPER 398
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL S + + +PF +GRR C
Sbjct: 399 FLDSS-GYFAKKEALVPFSLGRRHC 422
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R +PL + SED + G+ +PKG V+ + DE W F P R
Sbjct: 339 LHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPER 398
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL S + + +PF +GRR C
Sbjct: 399 FLDSS-GYFAKKEALVPFSLGRRHC 422
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARV----LATSRDESTWDHAHSFMPIR 56
+KET RL+P + L L R S D + + +P G V + R+ + + + P R
Sbjct: 343 LKETLRLYP-VGLFLERVVSSDLVLQNYHIPAGTLVQVFLYSLGRNAALFPRPERYNPQR 401
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+L D+ GRNF +PFG G R C
Sbjct: 402 WL--DIRGSGRNFHHVPFGFGMRQC 424
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E RL P + +L+R+A + E+ G+ +P GA ++ A RD ++D F P R
Sbjct: 328 IVEAMRLRPAV-WVLTRRAVAESELGGYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDR 386
Query: 57 FLGSDVDFIGRNFESIPFGVGRRICP 82
+L + + + PF G+R CP
Sbjct: 387 WLPERAANVPK-YAMKPFSAGKRKCP 411
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 3 ETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLAT----SRDESTWDHAHSFMPIRFL 58
ETFR +P + + D + GF +PKG V + D+ W + F+P RFL
Sbjct: 347 ETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFL 406
Query: 59 GSD--VDFIGRNFESIPFGVGRRIC 81
D +D + + I FG+G+R C
Sbjct: 407 TPDGAIDKVLSE-KVIIFGMGKRKC 430
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARV----LATSRDESTWDHAHSFMPIR 56
+KET RLHP I + L R D + +++P V A RD + + F P R
Sbjct: 342 IKETLRLHP-ISVTLQRYPESDLVLQDYLIPAKTLVQVAIYAMGRDPAFFSSPDKFDPTR 400
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+L D D I +F ++ FG G R C
Sbjct: 401 WLSKDKDLI--HFRNLGFGWGVRQC 423
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIG-FIVPKGA------RVLATSRDESTWDHAHSFM 53
+KE+ RL P +P + + + ++G + +PKG +VL +S D ++ +H F
Sbjct: 349 LKESMRLTPSVPF--TTRTLDKPTVLGEYALPKGTVLTLNTQVLGSSED--NFEDSHKFR 404
Query: 54 PIRFLGSDVDFIGRNFESIPFGVGRRIC 81
P R+L + F +PFG+G+R+C
Sbjct: 405 PERWLQKEKKI--NPFAHLPFGIGKRMC 430
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLA----TSRDESTWDHAHSFMPIR 56
+KET RLHPP+ ++L R A + E+ G + +G V A ++R + H F+P R
Sbjct: 311 LKETLRLHPPL-IILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPAR 369
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+ + + + IPFG GR C
Sbjct: 370 YEQPRQEDLLNRWTWIPFGAGRHRC 394
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLA----TSRDESTWDHAHSFMPIR 56
+KET RLHPP+ ++L R A + E+ G + +G V A ++R + H F+P R
Sbjct: 311 LKETLRLHPPL-IILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPAR 369
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+ + + + IPFG GR C
Sbjct: 370 YEQPRQEDLLNRWTWIPFGAGRHRC 394
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLA----TSRDESTWDHAHSFMPIR 56
+KET RLHPP+ ++L R A + E+ G + +G V A ++R + H F+P R
Sbjct: 311 LKETLRLHPPL-IILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPAR 369
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+ + + + IPFG GR C
Sbjct: 370 YEQPRQEDLLNRWTWIPFGAGRHRC 394
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLA----TSRDESTWDHAHSFMPIR 56
+KET RLHPP+ ++L R A + E+ G + +G V A ++R + H F+P R
Sbjct: 311 LKETLRLHPPL-IILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPAR 369
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+ + + + IPFG GR C
Sbjct: 370 YEQPRQEDLLNRWTWIPFGAGRHRC 394
>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
Length = 343
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+ET R + PI L R A+ED I + KG +V+ + +RDE+ +D F
Sbjct: 222 VEETLRYYSPIQFLPHRFAAEDSYINNKKIKKGDQVIVYLGSANRDETFFDEPDLFK--- 278
Query: 57 FLGSDVDFIGRNFESIPFGVGRRICPDLPL 86
IGR + FG+G +C PL
Sbjct: 279 --------IGRREMHLAFGIGIHMCLGAPL 300
>pdb|3VNO|A Chain A, Cytochrome P450sp Alpha (cyp152b1) Mutant R241e
Length = 407
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+E R +P P +++R AS+D E G P+G +V+ ++ D +TW F P R
Sbjct: 270 VQEVRRFYPFFPAVVAR-ASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPER 328
Query: 57 FLGSDVDFIGRNFESIPFGVG 77
F D D +F IP G G
Sbjct: 329 FRAWDED----SFNFIPQGGG 345
>pdb|3VM4|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) In Complex With
(R)-Ibuprophen
Length = 407
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+E R +P P +++R AS+D E G P+G +V+ ++ D +TW F P R
Sbjct: 270 VQEVRRFYPFFPAVVAR-ASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPER 328
Query: 57 FLGSDVDFIGRNFESIPFGVG 77
F D D +F IP G G
Sbjct: 329 FRAWDED----SFNFIPQGGG 345
>pdb|3VOO|A Chain A, Cytochrome P450sp Alpha (cyp152b1) Mutant A245e
Length = 407
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+E R +P P +++R AS+D E G P+G +V+ ++ D +TW F P R
Sbjct: 270 VQEVRRFYPFFPAVVAR-ASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPER 328
Query: 57 FLGSDVDFIGRNFESIPFGVG 77
F D D +F IP G G
Sbjct: 329 FRAWDED----SFNFIPQGGG 345
>pdb|3AWQ|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant L78f
Length = 415
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+E R +P P +++R AS+D E G P+G +V+ ++ D +TW F P R
Sbjct: 278 VQEVRRFYPFFPAVVAR-ASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPER 336
Query: 57 FLGSDVDFIGRNFESIPFGVG 77
F D D +F IP G G
Sbjct: 337 FRAWDED----SFNFIPQGGG 353
>pdb|3AWM|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Wild-Type With Palmitic
Acid
Length = 415
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+E R +P P +++R AS+D E G P+G +V+ ++ D +TW F P R
Sbjct: 278 VQEVRRFYPFFPAVVAR-ASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPER 336
Query: 57 FLGSDVDFIGRNFESIPFGVG 77
F D D +F IP G G
Sbjct: 337 FRAWDED----SFNFIPQGGG 353
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R IP+ L+R+ +D + F +PKG V + RD S + + F P
Sbjct: 334 IHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL F ++ +PF +G+R C
Sbjct: 394 FLNEKGQF-KKSDAFVPFSIGKRNC 417
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R IP+ L+R+ +D + F +PKG V + RD S + + F P
Sbjct: 334 IHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL F ++ +PF +G+R C
Sbjct: 394 FLNEKGQF-KKSDAFVPFSIGKRNC 417
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R IP+ L+R+ +D + F +PKG V + RD S + + F P
Sbjct: 334 IHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL F ++ +PF +G+R C
Sbjct: 394 FLNEKGQF-KKSDAFVPFSIGKRNC 417
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R IP+ L+R+ +D + F +PKG V + RD S + + F P
Sbjct: 334 IHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL F ++ +PF +G+R C
Sbjct: 394 FLNEKGQF-KKSDAFVPFSIGKRNC 417
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 3 ETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLAT----SRDESTWDHAHSFMPIRFL 58
ETFR +P + + D + GF +PK V + D W+ F P RFL
Sbjct: 350 ETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFL 409
Query: 59 GSDVDFIGR--NFESIPFGVGRRIC 81
+D I + + + + FG+G+R C
Sbjct: 410 TADGTAINKPLSEKMMLFGMGKRRC 434
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R IP+ L+R+ +D + F +PKG V + RD S + + F P
Sbjct: 334 IHEIQRFGDVIPMGLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL F ++ +PF +G+R C
Sbjct: 394 FLNEKGQF-KKSDAFVPFSIGKRNC 417
>pdb|3AWP|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant F288g
Length = 415
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+E R +P P +++R AS+D E G P+G +V+ ++ D +TW F P R
Sbjct: 278 VQEVRRFYPFGPAVVAR-ASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPER 336
Query: 57 FLGSDVDFIGRNFESIPFGVG 77
F D D +F IP G G
Sbjct: 337 FRAWDED----SFNFIPQGGG 353
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E RL IP + ++D + G+++PK V + D ++ ++F P
Sbjct: 334 IHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRICPDLPLDITMLY 92
FL ++ + RN +PF +G+RIC + T L+
Sbjct: 394 FLDAN-GALKRNEGFMPFSLGKRICAGEGIARTELF 428
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E RL IP + ++D + G+++PK V + D ++ ++F P
Sbjct: 334 IHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL ++ + RN +PF +G+RIC
Sbjct: 394 FLDAN-GALKRNEGFMPFSLGKRIC 417
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E RL IP + ++D + G+++PK V + D ++ ++F P
Sbjct: 334 IHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL ++ + RN +PF +G+RIC
Sbjct: 394 FLDAN-GALKRNEGFMPFSLGKRIC 417
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E RL IP + ++D + G+++PK V + D ++ ++F P
Sbjct: 334 IHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL ++ + RN +PF +G+RIC
Sbjct: 394 FLDAN-GALKRNEGFMPFSLGKRIC 417
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E RL IP + ++D + G+++PK V + D ++ ++F P
Sbjct: 334 IHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL ++ + RN +PF +G+RIC
Sbjct: 394 FLDAN-GALKRNEGFMPFSLGKRIC 417
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 3 ETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFL 58
E R +P+ + + + ++G+ +PK V + + D W + +F P RFL
Sbjct: 347 EAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFL 406
Query: 59 GSDVDFIGRNFES--IPFGVGRRIC 81
D I ++ S + F VG+R C
Sbjct: 407 DKD-GLINKDLTSRVMIFSVGKRRC 430
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
+ E R +P+ L+ + ++D + F +PKG V + RD + + F P
Sbjct: 334 IHEIQRFGDMLPMGLAHRVNKDTKFRDFFLPKGTEVFPMLGSVLRDPRFFSNPRDFNPQH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL F ++ +PF +G+R C
Sbjct: 394 FLDKKGQF-KKSDAFVPFSIGKRYC 417
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLAT----SRDESTWDHAHSFMPIR 56
V E R +P L +A+ D G+++PKG V+ T D + F P
Sbjct: 333 VHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEH 392
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL + F ++ PF G+R+C
Sbjct: 393 FLNENGKFKYSDYFK-PFSTGKRVC 416
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLA--TS--RDESTWDHAHSFMPIR 56
V E R +P + + D + +++PKG ++A TS D+ + + + F P
Sbjct: 334 VHEIQRYSDLVPTGVPHAVTTDTKFRNYLIPKGTTIMALLTSVLHDDKEFPNPNIFDPGH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL + +F ++ +PF G+RIC
Sbjct: 394 FLDKNGNFKKSDY-FMPFSAGKRIC 417
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLAT----SRDESTWDHAHSFMPIR 56
V E R IP L + D + +++PKG +L + D + + F P
Sbjct: 335 VHEVQRYIDLIPTSLPHAVTCDVKFRNYLIPKGTTILTSLTSVLHDNKEFPNPEMFDPRH 394
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL +F N+ +PF G+RIC
Sbjct: 395 FLDEGGNFKKSNY-FMPFSAGKRIC 418
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARV----LATSRDESTWDHAHSFMPIR 56
+KET RLH PI + L R D + +++P V A R+ + + +F P R
Sbjct: 341 IKETLRLH-PISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTR 399
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+L D + F ++ FG G R C
Sbjct: 400 WLSKDKNIT--YFRNLGFGWGVRQC 422
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARV----LATSRDESTWDHAHSFMPIR 56
+KET RLH PI + L R D + +++P V A R+ + + +F P R
Sbjct: 338 IKETLRLH-PISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTR 396
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
+L D + F ++ FG G R C
Sbjct: 397 WLSKDKNIT--YFRNLGFGWGVRQC 419
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLATS----RDESTWDHAHSFMPIR 56
V+E R P +P+ +R A+ED E+ G +P G V + RD + A F
Sbjct: 280 VEEVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRDPRVFADADRF---- 335
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
D+ + R SI FG G C
Sbjct: 336 ----DIT-VKREAPSIAFGGGPHFC 355
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLATS----RDESTWDHAHSFMPIR 56
V+E R P +P+ +R A+ED E+ G +P G V + RD + A F
Sbjct: 290 VEEVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRDPRVFADADRF---- 345
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
D+ + R SI FG G C
Sbjct: 346 ----DIT-VKREAPSIAFGGGPHFC 365
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 2 KETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLATS--RDESTWDHAHSFMPIRFLG 59
+E RL+PP +L+R+ + +P+G ++ + + +F P RFL
Sbjct: 259 QEALRLYPPA-WILTRRLERPLLLGEDRLPQGTTLVLSPYVTQRLYFPEGEAFQPERFLA 317
Query: 60 SDVDFIGRNFESIPFGVGRRIC 81
GR F PFG+G+R+C
Sbjct: 318 ERGTPSGRYF---PFGLGQRLC 336
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V E R +P L + D + +++PKG +L + D + + F P
Sbjct: 335 VHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHH 394
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL +F + +PF G+RIC
Sbjct: 395 FLDEGGNFKKSKY-FMPFSAGKRIC 418
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V E R +P L + D + +++PKG +L + D + + F P
Sbjct: 333 VHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHH 392
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL +F + +PF G+RIC
Sbjct: 393 FLDEGGNFKKSKY-FMPFSAGKRIC 416
>pdb|1GWI|A Chain A, The 1.92 A Structure Of Streptomyces Coelicolor A3(2)
Cyp154c1: A New Monooxygenase That Functionalizes
Macrolide Ring Systems
pdb|1GWI|B Chain B, The 1.92 A Structure Of Streptomyces Coelicolor A3(2)
Cyp154c1: A New Monooxygenase That Functionalizes
Macrolide Ring Systems
Length = 411
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIR 56
V+ET R P +L R A+ED + ++P G ++ A RDE AH R
Sbjct: 279 VEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDE----RAHGPTADR 334
Query: 57 FLGSDVDFIGRNFESIPFGVGRRICPDLPL 86
F D+ N I FG G +CP L
Sbjct: 335 F---DLTRTSGN-RHISFGHGPHVCPGAAL 360
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARV---LATS-RDESTWDHAHSFMPIR 56
+ E R +P+ + ++ G+I+PK V L+T+ D ++ +F P
Sbjct: 334 IYEIQRFSDLLPMGVPHIVTQHTSFRGYIIPKDTEVFLILSTALHDPHYFEKPDAFNPDH 393
Query: 57 FLGSDVDFIGRNFESIPFGVGRRIC 81
FL ++ + + IPF +G+RIC
Sbjct: 394 FLDAN-GALKKTEAFIPFSLGKRIC 417
>pdb|2Z3T|A Chain A, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|B Chain B, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|C Chain C, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|D Chain D, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3U|A Chain A, Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome
P450 Stap (Cyp245a1)
pdb|3A1L|A Chain A, Crystal Structure Of 11,11'-Dichlorochromopyrrolic Acid
Bound Cytochrome P450 Stap (Cyp245a1)
Length = 425
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 17/86 (19%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLA----TSRDESTWDHAHSFMPIR 56
V+E R PP+ + +R A ED + +P+G+RV+A +RD P R
Sbjct: 291 VEELMRYDPPVQAV-TRWAYEDIRLGDHDIPRGSRVVALLGSANRD-----------PAR 338
Query: 57 FLGSDVDFIGRNFE-SIPFGVGRRIC 81
F DV + R E + FG+G C
Sbjct: 339 FPDPDVLDVHRAAERQVGFGLGIHYC 364
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIG-FIVPKGARVLAT----SRDESTW-DHAHSFMP 54
+ E RL P P S A ED + G + + KG ++ RD++ W D F P
Sbjct: 319 LNEALRLWPTAPAF-SLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRP 377
Query: 55 IRFLGSDVDFIGRNFESIPFGVGRRICP 82
RF F+ PFG G+R CP
Sbjct: 378 ERFENPSA-IPQHAFK--PFGNGQRACP 402
>pdb|3BJN|A Chain A, Crystal Structure Of C-terminal Domain Of Putative
Transcriptional Regulator From Vibrio Cholerae,
Targeted Domain 79-240
Length = 165
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 11 IPLLLSRKASEDGEIIGFIVPKGARVLATSRDESTWDHAHSFM 53
+ +LSR + GE + VP G R L S+ ES SF+
Sbjct: 15 VEAVLSRLQKQTGEXAAYXVPVGYRALCVSQRESXQALRCSFV 57
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 32 KGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGVG 77
KG VL T+ D WDH F P RF + + F+ IP G G
Sbjct: 310 KGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREENL----FDMIPQGGG 355
>pdb|3DAM|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DAN|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DBM|A Chain A, Crystal Structure Of Allene Oxide Synthase
Length = 473
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 1 VKETFRLHPPIPLLLSRKASE---DGEIIGFIVPKGARVLA----TSRDESTWDHAHSFM 53
V E+ R+ PP+P + S + F V KG + ++D +D ++
Sbjct: 334 VYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYV 393
Query: 54 PIRFLG 59
P RF+G
Sbjct: 394 PDRFVG 399
>pdb|3EQM|A Chain A, Crystal Structure Of Human Placental Aromatase Cytochrome
P450 In Complex With Androstenedione
pdb|3S79|A Chain A, Human Placental Aromatase Cytochrome P450 (Cyp19a1)
Refined At 2.75 Angstrom
pdb|3S7S|A Chain A, Crystal Structure Of Human Placental Aromatase Complexed
With Breast Cancer Drug Exemestane
pdb|4GL5|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg029 (Compound 4)
pdb|4GL7|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg046 (Compound 5)
Length = 503
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVLATSRDESTWDHAHSFMP------ 54
+ E+ R P + L++ RKA ED I G+ V KG ++ H F P
Sbjct: 360 IYESMRYQPVVDLVM-RKALEDDVIDGYPVKKGTNIILNIGRM----HRLEFFPKPNEFT 414
Query: 55 IRFLGSDVDFIGRNFESIPFGVGRRICPDLPLDITML 91
+ +V + R F+ PFG G R C + + M+
Sbjct: 415 LENFAKNVPY--RYFQ--PFGFGPRGCAGKYIAMVMM 447
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 1 VKETFRLHPPIPLLLSRKASE---DGEIIGFIVPKGARVLA----TSRDESTWDHAHSFM 53
V E R PP+ R + + F V G + +RD +D A F+
Sbjct: 351 VYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFV 410
Query: 54 PIRFLGSDVDFIGRN 68
P RF+G + + + R+
Sbjct: 411 PERFVGEEGEKLLRH 425
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 1 VKETFRLHPPIPLLLSRKASE---DGEIIGFIVPKGARVLA----TSRDESTWDHAHSFM 53
V E R PP+ R + + F V G + +RD +D A F+
Sbjct: 351 VYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFV 410
Query: 54 PIRFLGSDVDFIGRN 68
P RF+G + + + R+
Sbjct: 411 PERFVGEEGEKLLRH 425
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 4 TFRLHPPIPLLL-----SRKASEDGEIIGFIVPKGARVLATSRDESTWDHAHSFMPIRFL 58
TF L+P L S K++ + P G +VL +DH + + +
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 59 GSDVDFIGRNF-ESIPFGVGR 78
G + GR+F E+I +G+ R
Sbjct: 99 GQEPLLFGRSFRENIAYGLTR 119
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 4 TFRLHPPIPLLL-----SRKASEDGEIIGFIVPKGARVLATSRDESTWDHAHSFMPIRFL 58
TF L+P L S K++ + P G +VL +DH + + +
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 59 GSDVDFIGRNF-ESIPFGVGR 78
G + GR+F E+I +G+ R
Sbjct: 99 GQEPLLFGRSFRENIAYGLTR 119
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 49 AHSFMPIRFLGSDVDFIGRNFESIPFGVGRRIC 81
+F P RFL GR F PFG+G+R+C
Sbjct: 307 GEAFRPERFLEERGTPSGRYF---PFGLGQRLC 336
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 4 TFRLHPPIPLLL-----SRKASEDGEIIGFIVPKGARVLATSRDESTWDHAHSFMPIRFL 58
TF L+P L S K++ + P G +VL +DH + + +
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 59 GSDVDFIGRNF-ESIPFGVGR 78
G + GR+F E+I +G+ R
Sbjct: 99 GQEPLLFGRSFRENIAYGLTR 119
>pdb|2P5Z|X Chain X, The E. Coli C3393 Protein Is A Component Of The Type Vi
Secretion System And Exhibits Structural Similarity To
T4 Bacteriophage Tail Proteins Gp27 And Gp5
Length = 491
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 46 WDHAHSFMPIRFLGSDVD---FIGRNFESIPF 74
+DHAH + IR L S VD F GR S PF
Sbjct: 12 FDHAHHKLKIRGLQSPVDVLTFEGREQLSTPF 43
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 11 IPLLLSRKASEDGEIIGFIVPKGARVLATSRDESTWDH 48
PL L+ K EI+ ++ KGA V A S+D +T +H
Sbjct: 44 TPLHLAAKNGH-AEIVKLLLAKGADVNARSKDGNTPEH 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.146 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,812,978
Number of Sequences: 62578
Number of extensions: 103722
Number of successful extensions: 361
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 64
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)